Small Molecule-Induced, Selective STAT3 Degradation Leads ...€¦ · KYM-003 leads to significant...

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0.01 0.1 1 10 100 1000 10000100000 -25 0 25 50 75 100 125 KYM-003 [nM] Growth inhibition (%control) MOLM-16 SU-DHL-1 Small Molecule-Induced, Selective STAT3 Degradation Leads to Anti-Tumor Activity in STAT3-Dependent Heme Malignancies Fred Csibi , Bin Yang, Karen Yuan, Michele Mayo, Haojing Rong, Scott Rusin, Kirti Sharma, Henry Li, Sharon Townson, Hari Kamadurai, Mike Sintchak, Yogesh Chutake, Jesse Chen, Christine Loh, Jared Gollob, Duncan Walker, Nan Ji and Nello Mainolfi, Kymera Therapeutics, Inc. 300 Technology Square, Cambridge, MA 02139. Contact: [email protected] KYM-003 causes rapid, potent, and highly selective degradation of STAT3 in multiple cellular systems Introduction Conclusions Disclosures: Csibi, Yang, Mayo, Yuan, Rong, Rusin, Sharma, Li, Townson, Kamadurai, Sintchak, Chutake, Gollob, Walker, Ji and Mainolfi: Kymera Therapeutics: Employment, Equity Ownership. STAT3 integrates multiple upstream signaling events to regulate a wide variety of cellular functions 3803 Targeted protein degradation is a new therapeutic modality that expands the ability to target difficult-to-drug oncogenic proteins. STAT3 is a transcription factor downstream of several signaling events including the IL-6/JAK pathway. Activating mutations and aberrant activation of STAT3 drive a subset of tumors via induction of autocrine factors that promote tumor proliferation and survival, as well as induction of proteins that may contribute to a tumor permissive environment. STAT3 is therefore a highly attractive target for oncology. However, potent and selective agents specifically and directly targeting STAT3 have remained elusive. Degrading STAT3 will abrogate the JAK/STAT3 signaling axis to induce tumor cell death. Kymera Therapeutics is developing degraders of STAT3 with drug-like properties, represented here with KYM-003 and its analog compound A. These compounds potently and selectively degrade STAT3 protein and display strong anti-tumor activity in models of heme malignancies. Deep Tandem Mass Tag proteomics at 8h (>10,000 proteins detected) demonstrates selective STAT3 degradation KYM-003 represses the growth of multiple heme cell lines Overview of targeted protein degradation BROAD OPPORTUNITY ONLY BINDING SITE REQUIRED EFFICIENT CATALYTIC PROLONGED IMPACT TARGET PROTEIN DEGRADATION HITCHING A RIDE UPS INTACT & FUNCTIONAL Kymera has developed potent and highly selective STAT3 degraders with activity against mutant and wild type STAT3. Sustained STAT3 degradation of 90% or greater leads to apoptosis induction and cancer cell death within 48 hours in vitro and in vivo. STAT3 degraders are active in models of heme malignancies including ALCL and AML, supporting these as potential initial indications for clinical development. Kymera plans to develop STAT3 degraders in a variety of oncology and immunology indications. KYM-003 leads to significant regression in SU-DHL-1 tumor xenograft model at well tolerated doses A sustained and robust degradation of STAT3 with KYM-003 leads to profound anti-tumor activity in vitro and in vivo - Log 10 p-value Log 2 fold change (100 nM KYM-003 / DMSO) SU-DHL-1 -ΔS701 p=0.05 PIM1 is regulated by STAT3 Endogenous STAT3-HiBiT live cell assay (A549 cells) KYM-003 degrades both wild-type and mutant STAT3 in heme cell lines 0.1 1 10 100 1,000 10,000 -25 0 25 50 75 100 125 KYM-003 [nM] STAT3 protein (%control) MOLM-16 (AML): 4nM SU-DHL-1 (T cell lymphoma): 28nM 1 10 100 1,000 10,000 -25 0 25 50 75 100 125 Compound A [nM] STAT3 protein (%control) HDLM-2 (Hodgkin's lymphoma): 68nM STAT3 WT (DC 50 , MSD, 24 hr) STAT3 D661Y (DC 50 , WB, 24 hr) 0.1 1 10 100 1000 10000 100000 0 25 50 75 100 125 150 KYM-003 [nM] mRNA levels (%control) SOCS3 PD-L1 STAT3 Gene IC 50 (μM) / % Max inhibition, 24 hr SOCS3 0.185 / 87 STAT3 0.141 / 62 PD-L1 0.058 / 82 KYM-003 decreases STAT3-dependent gene expression RT-qPCR in SU-DHL-1 cells, 24 hr Molm-16 Log 2 fold change (30 nM KYM-003 / DMSO) -ΔS701 KYM-003 treatment leads to apoptosis induction and cell cycle defects in SU-DHL-1 lymphoma line 24 hours 48 hours 72 hours 96 hours 24 hours 48 hours 72 hours 96 hours 0 25 50 75 100 Frequency KYM-003, 500nM DMSO, 0.1% 24 hours 48 hours 72 hours 96 hours 0 25 50 75 100 Activated Caspase 3 (%Positive cells) 500nM KYM-003 DMSO 0.1% 24 hours 48 hours 72 hours 96 hours 0 25 50 75 100 Ki-67 Expression (%Positive cells) DMSO 0.1% 500nM KYM-003 KYM-003 treatment induces apoptosis at 48 hr that leads to cell death Time-dependent inhibition of proliferation with KYM-003 Increase in subG1 cells (PI/RNAse analysis, FACS) Cell line Tumor type CTG, GI 50 μM (%Max inh), Day 4 SU-DHL-1 (shown) ALCL (ALK+) 0.167 (>95) MOLM-16 (shown) AML 0.016 (80) A3/KAW DLBCL 1.9 (50-55) SUP-M2 ALCL (ALK+) 0.61 (>95) DEL ALCL (ALK+) 0.11 (>95) KARPAS-299 ALCL (ALK+) 0.14 (50-55) SR-786 ALCL (ALK+) 3.8 (75) 0 1 2 3 4 0 200 400 600 800 0 1×10 4 2×10 4 3×10 4 4×10 4 5×10 4 Time (days) % Cell Growth (normalized to T0) STAT3 levels (MSD signal) Cell Growth STAT3 levels 48 hr treatment wash-out 0 1 2 3 4 0 200 400 600 0 1×10 4 2×10 4 3×10 4 4×10 4 Time (days) % Cell Growth (normalized to T0) STAT3 levels (MSD signal) Cell Growth STAT3 levels 24 hr treatment wash-out Wash-out study demonstrates sustained degradation is required for SU-DHL-1 cells to commit to death A decrease of STAT3 by 90% is necessary to induce SU-DHL-1 apoptosis and inhibit cell growth Assay SU-DHL-1 STAT3 levels, MSD DC 90 (μM) at 24 hr 0.15 Apoptosis, Caspase3/7-Glo IC 50 (μM) at 48 hr 0.38 Growth inhibition, CTG IC 50 (μM) at 96 hr 0.167 0.1 1 10 100 1000 10000 100000 -25 0 25 50 75 100 125 150 KYM-003 [nM] HiBiT signal (%control) 1hr 6hr 4hr 2hr 48hr 24hr 8hr 0hr - Log 10 p-value p=0.05 Count Count STAT3-PE-A STAT3-PE-A DMSO KYM-003, 500nM Decrease of STAT3 at 24 hours JAK JAK GPCRs STAT3 STAT3 P STAT3 STAT3 P STAT3 GFRs STAT3 Degrader [KYM-003] IL-6Rs IL-6 Family Cytokines Nucleus Oncology: Survival and Proliferation Differentiation Angiogenesis and EMT Immunity: Th17 differentiation Inflammation M1/M2 polarization Treg function STAT3 MUT X X X SRC ALK P P P 0 5 10 15 20 0 1000 2000 3000 Days (post-randomization) Tumor Volume (mm 3 ) median 0 5 10 15 20 0 5 10 15 20 25 30 Days (post-randomization) Body Weight (g) Mean, ±SD Robust degradation of STAT3 for 48hr in tumor with single dose of 50mpk ip 0.01 0.1 1 10 100 1000 10000 100000 75 100 125 150 175 200 225 -25 0 25 50 75 100 125 KYM-003 [nM] Apoptosis (%DMSO) Growth inhibition / STAT3 (%DMSO) STAT3 levels (MSD, 24 hr) Apoptosis (Caspase3/7-Glo, 48 hr) Growth inhibition (CTG, 96 hr) 90% degradation

Transcript of Small Molecule-Induced, Selective STAT3 Degradation Leads ...€¦ · KYM-003 leads to significant...

Page 1: Small Molecule-Induced, Selective STAT3 Degradation Leads ...€¦ · KYM-003 leads to significant regression in SU-DHL-1 tumor xenograft model at well tolerated doses. A sustained

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Small Molecule-Induced, Selective STAT3 Degradation Leads to Anti-Tumor Activity in STAT3-Dependent Heme Malignancies

Fred Csibi, Bin Yang, Karen Yuan, Michele Mayo, Haojing Rong, Scott Rusin, Kirti Sharma, Henry Li, Sharon Townson, Hari Kamadurai, Mike Sintchak, Yogesh Chutake, Jesse Chen, Christine Loh, Jared Gollob, Duncan Walker, Nan Ji and Nello Mainolfi, Kymera Therapeutics, Inc. 300 Technology Square, Cambridge, MA 02139. Contact: [email protected]

KYM-003 causes rapid, potent, and highly selective degradation of STAT3 in multiple cellular systems

Introduction

Conclusions

Disclosures: Csibi, Yang, Mayo, Yuan, Rong, Rusin, Sharma, Li, Townson, Kamadurai, Sintchak, Chutake, Gollob, Walker, Ji and Mainolfi: Kymera Therapeutics: Employment, Equity Ownership.

STAT3 integrates multiple upstream signaling events to regulate a wide variety of cellular functions

3803

• Targeted protein degradation is a new therapeutic modality that expands the abilityto target difficult-to-drug oncogenic proteins.

• STAT3 is a transcription factor downstream of several signaling events including theIL-6/JAK pathway.

• Activating mutations and aberrant activation of STAT3 drive a subset of tumors viainduction of autocrine factors that promote tumor proliferation and survival, as wellas induction of proteins that may contribute to a tumor permissive environment.

• STAT3 is therefore a highly attractive target for oncology. However, potent andselective agents specifically and directly targeting STAT3 have remained elusive.

• Degrading STAT3 will abrogate the JAK/STAT3 signaling axis to induce tumor celldeath.

• Kymera Therapeutics is developing degraders of STAT3 with drug-like properties,represented here with KYM-003 and its analog compound A. These compoundspotently and selectively degrade STAT3 protein and display strong anti-tumoractivity in models of heme malignancies.

Deep Tandem Mass Tag proteomics at 8h (>10,000 proteins detected) demonstrates selective STAT3 degradation

KYM-003 represses the growth of multiple heme cell lines

Overview of targeted protein degradation

BROAD OPPORTUNITYONLY BINDING SITE REQUIRED

EFFICIENTCATALYTIC

PROLONGED IMPACTTARGET PROTEIN DEGRADATION

HITCHING A RIDEUPS INTACT & FUNCTIONAL

• Kymera has developed potent and highly selective STAT3 degraders with activity againstmutant and wild type STAT3.

• Sustained STAT3 degradation of 90% or greater leads to apoptosis induction and cancer celldeath within 48 hours in vitro and in vivo.

• STAT3 degraders are active in models of heme malignancies including ALCL and AML,supporting these as potential initial indications for clinical development.

• Kymera plans to develop STAT3 degraders in a variety of oncology and immunologyindications.

KYM-003 leads to significant regression in SU-DHL-1 tumor xenograft model at well tolerated doses

A sustained and robust degradation of STAT3 with KYM-003 leads to profound anti-tumor activity in vitro and in vivo

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KYM-003 degrades both wild-type and mutant STAT3 in heme cell lines

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Time-dependent inhibition of proliferation with KYM-003

Increase in subG1 cells (PI/RNAse analysis, FACS)

Cell line Tumor type CTG, GI50 μM (%Max inh), Day 4

SU-DHL-1 (shown) ALCL (ALK+) 0.167 (>95) MOLM-16 (shown) AML 0.016 (80)

A3/KAW DLBCL 1.9 (50-55)

SUP-M2 ALCL (ALK+) 0.61 (>95)

DEL ALCL (ALK+) 0.11 (>95)

KARPAS-299 ALCL (ALK+) 0.14 (50-55)

SR-786 ALCL (ALK+) 3.8 (75)

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A decrease of STAT3 by 90% is necessary to induce SU-DHL-1 apoptosis and inhibit cell growth

Assay SU-DHL-1STAT3 levels, MSD DC90 (μM) at 24 hr 0.15

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