Indexing LBSC 708A/CMSC 838L Session 7, October 23, 2001 Philip Resnik.
Embase: An introduction to indexing 20 October 2014
-
Upload
ann-marie-roche -
Category
Health & Medicine
-
view
84 -
download
2
description
Transcript of Embase: An introduction to indexing 20 October 2014
Embase® is a registered trademark of Elsevier BV. Embase® is a registered trademark of Elsevier BV.
Embase: An introduction to
indexing
Presented by Ann-Marie Roche
22 October [email protected]
2Ann-Marie Roche 22 October 2014 An introduction to indexing 2
• Webinar control panel:
• ‘chat’ for questions or ‘ask aquestion’
• minimize option for full screen view
• Q&A at the end of the webinar
• The goal is to understand how indexing works in Embase and how it impacts your search results.
NEED TO KNOWS
3FEB 2014 | EMBASE SALES PRESENTATION 3
EMBASE IS AS COMPREHENSIVE AS POSSIBLE
Percentage of relevant articles retrieved
0 % 50 % 100 %
Effor
t / to
ols
requ
ired
EMBASE
PUBMED
SOURCE
SCOPUS
TEXT MINING
4Ann-Marie Roche 22 October 2014 An introduction to indexing 4
ANATOMY OF AN INDEX
Methods section
Tables
7Ann-Marie Roche 22 October 2014 An introduction to indexing 7
EMBASE INDEX
8Ann-Marie Roche 22 October 2014 An introduction to indexing 8
EMBASE INDEX (DRUG SUBHEADINGS)
9Ann-Marie Roche 22 October 2014 An introduction to indexing 9
EMBASE INDEX (DISEASE SUBHEADINGS)
10Ann-Marie Roche 22 October 2014 An introduction to indexing 10
Focus on drugs and devices, with dynamic updating
INDEXING NEEDS A THESAURUS
Structure
Drug-rich content• >30,000 drug terms• ALL generics, trade names
& chemical names
Faceted structure• natural-language• synonym-rich• polyhierarchical
Dynamic updating• candidate term source list• updates 3x each year• all terms backposted
Content Updates
Medical devices• .> 3,000 device terms
(pre-2012: <1000 terms)
For further information: http://www.embase.com/info/what-is-embase/emtree
11FEB 2014 | EMBASE SALES PRESENTATION 11
NOT MISSING ANY IMPORTANT INFORMATION
Embase Medline
Humira 16,200 4048
Enbrel 19,711 4197
Remicade 30,347 9,493
Advair 2425 264Lantus 6101 1741
Rituxin 40,829 13,076
Avastin 35,591 1,086
12Ann-Marie Roche 22 October 2014 An introduction to indexing 12
Searching for Adverse reactions
BROWSING EMTREE TO FIND DRUG NAMES
BROWSE EMTREE FACETS
13Ann-Marie Roche 22 October 2014 An introduction to indexing 13
Searching for Adverse reactions
DRUG SEARCH
FIND A SPECIFIC DRUG TERM
14Ann-Marie Roche 22 October 2014 An introduction to indexing 14
adverse reactions
FIND ADVERSE EVENTS FOR CISPLATIN
15Ann-Marie Roche 22 October 2014 An introduction to indexing 15
adverse reactions to cisplatin
FILTER FROM LIST OF INDEXED DISEASES
16Ann-Marie Roche 22 October 2014 An introduction to indexing 16
ADVERSE REACTIONS TO CISPLATIN
IN-DEPTH DRUG INDEXING
17Ann-Marie Roche 22 October 2014 An introduction to indexing 17
DEFINITIONS OF ADVERSE EVENTS
ON EMBASE AND MEDLINE
Embase
PubMed / MEDLINEfirst 4 of >100 terms
"chemicals and drugs category/adverse effects"[MeSH Terms] NOT ("chemicals and drugs category/toxicity"[MeSH Terms] OR "chemicals and drugs category/poisoning"[MeSH Terms])
Search using:
Search using: "chemicals and drugs”/exp/dd_ae
only in humans
18Ann-Marie Roche 22 October 2014 An introduction to indexing 18
Adverse reactions to cisplatin
EMBASE VS MEDLINE
Embase
19Ann-Marie Roche 22 October 2014 An introduction to indexing 19
FINDING NEW DRUGS
Ref: http://www.news-sentinel.com/apps/pbcs.dll/article?AID=/20121115/NEWS/121119726/-1/LIVING
20Ann-Marie Roche 22 October 2014 An introduction to indexing 20
FINDING NEW DRUGS
STEP 1: IDENTIFYING THE DRUG CATEGORY
21Ann-Marie Roche 22 October 2014 An introduction to indexing 21
FINDING NEW DRUGS
STEP 2: SEARCH USING THE DRUG CATEGORY
Change /exp to /de and add ‘unclassified drug’ (see notes)
22Ann-Marie Roche 22 October 2014 An introduction to indexing 22
FINDING NEW DRUGS
STEP 3: CANDIDATE TERMS NOT FOUND IN EMTREE
23Ann-Marie Roche 22 October 2014 An introduction to indexing 23
FINDING NEW DRUGS
IDENTIFYING TRADE NAMES AND MANUFACTURERS
From drug index for this article
24Ann-Marie Roche 22 October 2014 An introduction to indexing 24
FINDING NEW DRUGS
STEP 4: MORE INFORMATION ON TRADE NAMES AND LAB CODES
25Ann-Marie Roche 22 October 2014 An introduction to indexing 25
Emtree is now updated 3x each year
Terms added and changed are listed: http://
www.embase.com/info/what-is-embase/emtree
New terms backposted to past years:
a) if indexed earlier as candidate terms
b) if previous PTs are assigned as synonyms
BACK-POSTING?
26Ann-Marie Roche 22 October 2014 An introduction to indexing 26
BACK-POSTING?
27Ann-Marie Roche 22 October 2014 An introduction to indexing 27
SEARCHING FOR MEDICAL DEVICES
NEW TREE STRUCTURE IN 2013 AND UPDATED IN 2014
28Ann-Marie Roche 22 October 2014 An introduction to indexing 28
SEARCHING FOR MEDICAL DEVICES
USING FILTERS TO SEARCH FOR TRADE NAMES AND COMPLICATIONS
29Ann-Marie Roche 22 October 2014 An introduction to indexing 29
From Emtree facet “Types of article or study” Include many more terms than check tags Now include “Topic terms” (from 2011)
Topic terms: 10 terms ending with (topic)
Topic terms were introduced in 2011 to differentiate between study types, indexed when the article IS the primary report for an RCT (for example), and articles in which that term is only a topic that is discussed.
SEARCHING FOR EVIDENCE: STUDY TYPES AND TOPIC TERMS
30Ann-Marie Roche 22 October 2014 An introduction to indexing 30
Over 9m records in Embase are licensed from NLM
They currently come from over 2500 active journals … distributed over all years (1940 – present)
280,000 recs /yr
1974
MEDLINE RECORDS IN EMBASE
31Ann-Marie Roche 22 October 2014 An introduction to indexing 31
2. EXPANDTo expose and summarize the information in biomedical articles beyond title and abstract: discovering in-depth data about drugs, diseases and medical devices
1. TRANSLATETo bring the semantic richness of medical terminology within your grasp: mapping many synonyms to a single (natural language) preferred terminology
3. FOCUSTo identify the key concepts hidden within those articles – what they are really about – providing you with a toolkit to find answers beginning with comprehensive searches
INDEXING PRINCIPLES
THANK YOU ANY
QUESTIONS?
32Ann-Marie Roche 22 October 2014 An introduction to indexing
THANK YOU ANY
QUESTIONS?
32
33Ann-Marie Roche 22 October 2014 An introduction to indexing 33
AND FOR MORE INFORMATION …
PLEASE FILL IN THE SURVEY WHICH WILL POP UP AT THE END OF THE WEBINAR.
For more information and questions please use Help in Embase, where you may also find all training and support materials and our full webinar schedule.
Our next Embase webinar is on November 26 and will focus on drug safety and device post-surveillance searching. We hope to have a special external guest also.
The slides and recording will be shared within 24 hours.
THANK YOU and SEE YOU NEXT TIME!