Theory and practice of graphical population analysis
Endosymbiosis
Blast
The genome of prokaryotes and eukaryotes- nuclear and extranuclear genetic organization.
Escherichia coli, strain CFT073, uropathogenic Escherichia coli, strain EDL933, enterohemorrhagic Escherichia coli K12, strain MG1655, laboratory strain,
Please feel free to chat amongst yourselves until we begin at the top of the hour. 1.
Protein Targeting by Functional Linkage of Non-Homologous Proteins with examples from M. tuberculosis Genome-wide functional linkage map Structural Genomics.
1 (c) Mark Gerstein, 1999, Yale, bioinfo.mbb.yale.edu BIOINFORMATICS Databases Mark Gerstein, Yale University bioinfo.mbb.yale.edu/mbb452a.
Sequence and structure databanks can be divided into many different categories. One of the most important is Supervised databanks with gatekeeper. Examples:
Description of Group B Streptococcus Pan-genome Genome comparisons of 8 closely related GBS strains Tettelin, Fraser et al., PNAS 2005 Sep 27;102(39)
Analyses of ORFans in microbial and viral genomes Journal club presentation on Mar. 14 Albert Yu.
Scale of the ‘unknown’ gene problem Scale of the ‘unknown’ gene problem Principles of comparative genomics Shared plant-prokaryote genes Shared plant-prokaryote.
