Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH...

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Microwave Chemistry and Solid Phase Microwave Chemistry and Solid Phase Synthesis Synthesis (a). Solid phase peptide synthesis (a). Solid phase peptide synthesis (b). Immobilized reagents (b). Immobilized reagents (c). Pd chemistry (c). Pd chemistry

Transcript of Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH...

Page 1: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Microwave Chemistry and Solid Phase Microwave Chemistry and Solid Phase SynthesisSynthesis

(a). Solid phase peptide synthesis(a). Solid phase peptide synthesis

(b). Immobilized reagents(b). Immobilized reagents

(c). Pd chemistry(c). Pd chemistry

Page 2: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Solid Phase Peptide Synthesis Solid Phase Peptide Synthesis -- The The FmocFmoc/Bu/Butt RouteRoute

OO

O

O

Fmoc-NH(i) 20% Piperidine

TFA Cleavage

(ii) Fmoc-Lys(Boc)-OH / Coupling reagent

OHO

HN

OH2N

NH2HO

PS

OO

O

O

NH

PSOFmoc-NH

Boc-NH

Base/Weak Acid Base/Weak Acid OrthogonalityOrthogonality3 Steps:3 Steps:

PiperidinePiperidine (to remove (to remove FmocFmoc groups and allow groups and allow chain extension) chain extension) TFA for cleavage from the resin and side TFA for cleavage from the resin and side chain chain deprotectiondeprotection!!Coupling of new amino acid to growing peptide Coupling of new amino acid to growing peptide chainchain

Page 3: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Solid Phase Peptide Synthesis Solid Phase Peptide Synthesis –– Which Steps Which Steps Might Benefit from Microwave Heating?Might Benefit from Microwave Heating?

OO

O

O

Fmoc-NH(i) 20% Piperidine

TFA Cleavage

(ii) Fmoc-Lys(Boc)-OH / Coupling reagent

OHO

HN

OH2N

NH2HO

PS

OO

O

O

NH

PSOFmoc-NH

Boc-NH

PiperidinePiperidine (to remove (to remove FmocFmoc groups)groups)

TFA for cleavage from the resin and side TFA for cleavage from the resin and side chain chain deprotectiondeprotection!!

Coupling of new amino acid to growing peptide Coupling of new amino acid to growing peptide chainchain

Page 4: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Solid Phase Peptide Synthesis Solid Phase Peptide Synthesis –– Which Steps Which Steps Might Benefit from Microwave Heating?Might Benefit from Microwave Heating?

OO

O

O

Fmoc-NH(i) 20% Piperidine

TFA Cleavage

(ii) Fmoc-Lys(Boc)-OH / Coupling reagent

OHO

HN

OH2N

NH2HO

PS

OO

O

O

NH

PSOFmoc-NH

Boc-NH

PiperidinePiperidine (to remove (to remove FmocFmoc groups) groups) –– No need!No need!

TFA for cleavage from the resin and side TFA for cleavage from the resin and side chain chain deprotectiondeprotection!!

Coupling of new amino acid to growing peptide Coupling of new amino acid to growing peptide chainchain

Page 5: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Solid Phase Peptide Synthesis Solid Phase Peptide Synthesis –– Which Steps Which Steps Might Benefit from Microwave Heating?Might Benefit from Microwave Heating?

OO

O

O

Fmoc-NH(i) 20% Piperidine

TFA Cleavage

(ii) Fmoc-Lys(Boc)-OH / Coupling reagent

OHO

HN

OH2N

NH2HO

PS

OO

O

O

NH

PSOFmoc-NH

Boc-NH

PiperidinePiperidine (to remove (to remove FmocFmoc groups) groups) –– No need!No need!

TFA for cleavage from the resin and side TFA for cleavage from the resin and side chain chain deprotectiondeprotection! ! –– Avoid Avoid –– Hazardous!! Hazardous!!

Coupling of new amino acid to growing peptide Coupling of new amino acid to growing peptide chainchain

Page 6: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Solid Phase Peptide Synthesis Solid Phase Peptide Synthesis –– Which Steps Which Steps Might Benefit from Microwave Heating?Might Benefit from Microwave Heating?

OO

O

O

Fmoc-NH(i) 20% Piperidine

TFA Cleavage

(ii) Fmoc-Lys(Boc)-OH / Coupling reagent

OHO

HN

OH2N

NH2HO

PS

OO

O

O

NH

PSOFmoc-NH

Boc-NH

PiperidinePiperidine (to remove (to remove FmocFmoc groups) groups) –– No need!No need!

TFA for cleavage from the resin and side TFA for cleavage from the resin and side chain chain deprotectiondeprotection! ! –– Avoid Avoid –– Hazardous!! Hazardous!!

Coupling of new amino acid to growing peptide Coupling of new amino acid to growing peptide chain chain –– Yes Yes –– Main cause of peptide synthesis Main cause of peptide synthesis failurefailure

Page 7: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(a). Peptide Chemistry and Microwave (a). Peptide Chemistry and Microwave HeatingHeating

•• FmocFmoc group stability and DMF decompositiongroup stability and DMF decomposition

•• Many coupling agents have short halfMany coupling agents have short half--lives once added lives once added to a reaction mixture at 25to a reaction mixture at 25ooC (see C (see AlbericioAlbericio, JOC, , JOC, 1998 e.g. HATU and 1998 e.g. HATU and PyBOPPyBOP –– tt1/21/2 = 40 min at 25= 40 min at 25ooC C –– so so at 65at 65ooC, tC, t1/2 1/2 = 2.5 min).= 2.5 min).

•• Avoid the use of exotic (and expensive) coupling Avoid the use of exotic (and expensive) coupling regents regents –– side reactions, short lived side reactions, short lived

••Do not heat Do not heat FmocFmoc groups above 65groups above 65ooCC••DMF, DMA or NMP as solvent .DMF, DMA or NMP as solvent .

••Use DIC/Use DIC/HOBtHOBt for coupling.for coupling.

Page 8: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(a). Peptide Chemistry and Microwave (a). Peptide Chemistry and Microwave HeatingHeating

NOH

ONHBoc

Fmoc

O

N

NHBoc

H6

NH RINK

O

N

NH2

CargoNH2

7

TFA/TIS

PS

6

6H2N RINK PS

O

N

NHBoc

Fmoc6

n

NH RINK PS

Repeat Coupling

-Fmoc, + Cargo

+ Coupling Reagent-Fmoc Grou[p

NN--AlkylglycinesAlkylglycines for cell for cell deliverydelivery

Secondary amine makes Secondary amine makes coupling difficultcoupling difficult

Page 9: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(a). Peptide Chemistry and Microwave (a). Peptide Chemistry and Microwave HeatingHeating

N OH

ONHBoc

FmocO

N

NHBoc

Fmoc 6

7

NH RINK PS

6

m/z200 400 600 800 1000

0

20

40

60

80

100

*MSD1 SPC, time=0.523:1.447 of 0508\05080078.D API-ES, Pos, Scan, 70

Max: 712697 445

.5

334

.4

667

.6

min0 2 4 6 8

Norm.

0

2500

5000

7500

10000

12500

15000

17500

ADC1 A, ADC1 (0509\05090229.D)

3.19

7

PMP1, Solvent B

Microwave heating: 60 Microwave heating: 60 ooCC, 10 minute couplings, 10 minute couplingsDIC/DIC/HOBtHOBt (0.1M, 3equiv.)(0.1M, 3equiv.)

20% 20% PiperidinePiperidine –– 10 minutes 10 minutes

98% purity, ELS Detection98% purity, ELS DetectionSingle couplingsSingle couplings

Page 10: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Cellular Delivery Cellular Delivery -- Cell Permeable Cell Permeable PeptoidsPeptoids

Oligomer n = 3

% Incorporation 99

n = 5 n = 5 n = 7

93 (25oC)

97 (37oC) 99

Flow Flow cytometrycytometry analysis analysis with HEK293T cellswith HEK293T cells

PerettoPeretto, I.; Sanchez, I.; Sanchez--Martin, R. M.; Wang, X.Martin, R. M.; Wang, X.--h.; h.; EllardEllard, J.; , J.; MittooMittoo, S.; Bradley, M. , S.; Bradley, M. Chemical Communications Chemical Communications 20032003, 2312, 2312--23132313

NNH2

NH2

O6

ONH 5

n

Fluo

HEK293T (human embryonic HEK293T (human embryonic kidney) cells, general kidney) cells, general transmission image at low transmission image at low magnificationmagnification

1010µµM, 37ºC for 6h, M, 37ºC for 6h, fluorescent image at low fluorescent image at low magnificationmagnification

Page 11: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Cell Permeable Cell Permeable PeptoidsPeptoids –– UptakeUptakea)a) Comparative Comparative

uptake of uptake of K562 cells K562 cells with with oligomers oligomers (n=1,3,5,7,9)(n=1,3,5,7,9)

b)b) HeLa cells HeLa cells after after incubation incubation with 10 with 10 µµM M solution of solution of compound compound (n=9)(n=9)..

Page 12: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Cell Permeable Cell Permeable PeptoidsPeptoids

Cellular uptake of Cellular uptake of peptoid ( n = 7) by a peptoid ( n = 7) by a hippocampalhippocampal slice slice cultureculture

ThioninThionin stained stained hippocampalhippocampal slice slice

showing all the cell showing all the cell layerslayers

Page 13: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Directed Chemistry in CellsDirected Chemistry in Cells

Delivery within 30 Delivery within 30 minsmins

Nuclei labelling in live cellsNuclei labelling in live cells

SynthesisedSynthesised FluoresceinFluorescein--PPKKKRKVKKKRKV--PeptoidPeptoid (5 (5 mermer))

(DAPI stained nuclei)(DAPI stained nuclei)

Page 14: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

aa--MSH MSH : a: a--MelanocyteMelanocyte Stimulating Hormone Stimulating Hormone ( Ac( Ac--SYSMEHFRWGKPVSYSMEHFRWGKPV--NHNH22 ))

•• Cell impermeable.Cell impermeable.•• Binds the Binds the MelanocortinMelanocortin 1 receptor ( MC1R).1 receptor ( MC1R).•• Stimulates the pigmentation of Stimulates the pigmentation of melanocytesmelanocytes and melanoma and melanoma cells.cells.•• ImmunomodulatoryImmunomodulatory activity ( suppression of lymphocyte activity ( suppression of lymphocyte proliferation in vitro at 10proliferation in vitro at 10--13 13 M to 10M to 10--1111 M ).M ).

Can we deliver Can we deliver αα--MSH into Cells and Tissue?MSH into Cells and Tissue?

Page 15: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(a). Peptide Chemistry and Microwave Heating(a). Peptide Chemistry and Microwave Heating

ON

NH2

O

HN

6

7

5 NH2αMSHO

NH

FAM-NH 5

Addition of 17Addition of 17--mer peptide (mer peptide (ααMSHMSH) )

Microwave heating: 60 Microwave heating: 60 ooCC, 10 minute couplings, 10 minute couplingsDIC/DIC/HOBtHOBt (0.1M, 3equiv.)(0.1M, 3equiv.)

Coupling with Coupling with 5(6)5(6)--carboxyfluoresceincarboxyfluorescein (again 10 (again 10 minutes and quantitative)minutes and quantitative)

Isolated yield of peptide = 45% (>98% per step)Isolated yield of peptide = 45% (>98% per step)

Page 16: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

PigmentationPigmentation AssayAssay

S91 melanoma S91 melanoma cellscells in culture in culture

Page 17: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Human Skin Human Skin -- DeliveryDelivery

FluoFluo--αα--MSHMSH--PeptoidPeptoid (99) (3h, 10(99) (3h, 10--33 M)M) FluoFluo--αα--MSHMSH (3h, 10(3h, 10--33 M)M)

Page 18: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(a). Peptide Chemistry and Microwave (a). Peptide Chemistry and Microwave Heating Heating -- FRET PeptidesFRET Peptides

10 minute couplings: 6010 minute couplings: 60ooC, DMF, DIC/C, DMF, DIC/HOBtHOBtAll All FluorophoresFluorophores coupled easily (10 minutes).coupled easily (10 minutes).

NH

NH-RinkO

O

O

Fmoc-HN

NH

HN

O

NH O

HN

O

OtBu

NH O

HN

O

NH O

O

X-HN

O

HN

O-tBu

X'

X = Dabcyl; X' = FAM X = Fmoc-3-(NO2)Tyr; X' = 2-Abz

TG

NH2

min2 4 6 8 10 12 14

mAu

5500

6000

6500

7000

7500

8000

8500

9000

9500

ADC1 A, ADC1 (0508\05080052.D)

7.7

22

DabcylDabcyl/FAM Peptide/FAM Peptide(>90% purity)(>90% purity)

Page 19: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(a). Peptide Chemistry and Microwave Heating(a). Peptide Chemistry and Microwave Heating

6060ooC is optimal (rapid couplings and no byC is optimal (rapid couplings and no by--products)products)

Single couplings needed in all cases tested to dateSingle couplings needed in all cases tested to date

DIC/DIC/HOBtHOBt performed excellently under these conditionsperformed excellently under these conditions

Avoids the use of exotic coupling reagents with their Avoids the use of exotic coupling reagents with their problems and sideproblems and side--reactionsreactions

Excellent method for coupling poorly reactive acids such Excellent method for coupling poorly reactive acids such as as fluorophoresfluorophores

Time needed reduced form 1 week to 1 day with PeptoidTime needed reduced form 1 week to 1 day with Peptoid--Peptide conjugatePeptide conjugate

ArrheniusArrhenius basedbased accelerationacceleration

Page 20: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Isoureas as Isoureas as AlkylatingAlkylating Agents (CCE)Agents (CCE)

IsoureasIsoureas have been used to prepare esters from have been used to prepare esters from carboxylic acids. They are tolerant of other carboxylic acids. They are tolerant of other functional groups in the molecule but the urea byfunctional groups in the molecule but the urea by--product can be difficult to removeproduct can be difficult to remove

Low toxicity, but also lower reactivity than other Low toxicity, but also lower reactivity than other alkylating agentsalkylating agents

Use of a solidUse of a solid--supported supported isoureaisourea??

NHN

OR'

O

OH +

R'

O

OCH3

R

RNH+

HN

OR'

O

O-R

R

+ RNH

NH

RO

Page 21: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Polymer(b). Polymer--Supported OSupported O--alkylalkyl--isoureasisoureas

•• Microwave heating with Microwave heating with carbodiimidecarbodiimide resinsresins

•• No other reagents apart from methanol are used No other reagents apart from methanol are used (no purification problems)(no purification problems)

•• Easily followed by IREasily followed by IR

70 min

N N•cHex

NNH

O

cHexMeOHµω, 135o Loading Loading

1.75 mmol/g1.75 mmol/g

BronoBrono LinclauLinclau and Stefano and Stefano CrosignaniCrosignani, , AlessanderAlessander ChighineChighine

Page 22: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Synthesis of Esters(b). Synthesis of Esters

COOMe

83% (purity >95%)

COOMe

OH

85% (>95%)

COOAll

82% (>95%)

NH

NHBoc

COOAll

93% (>95%)

COOAllOH

90% (>95%)

HO

NHBoc

COOBn

99% (>95%)

COOBn

NHBoc

O

H2N

98% (>95%)

Org. Org. LettLett. . 20032003, 5, 853, 5, 853--856856

NNH

O RR'

O

OH + R'

O

OR

cHex THF60ο

(2 eq)16 h

Page 23: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Microwave(b). Microwave--Assisted Synthesis of EstersAssisted Synthesis of Esters

•• The use of acetonitrile instead of THF The use of acetonitrile instead of THF allows faster heatingallows faster heating

•• Similar results obtained for methyl, Similar results obtained for methyl, benzyl and benzyl and allylallyl esters esters

NNH

O R

(2 eq)

R'

O

OH + R'

O

OR

cHex CH3CNµω

130ο

5 min

COOR

89% (purity >95%)

COOR

OH

98% (>95%)

COOROH

97% (>95%)

HO

NHBoc

COOR

88% (>95%)

R=

NO2

Page 24: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Synthesis of PS(b). Synthesis of PS--isoureas with Copper isoureas with Copper (II) catalysis(II) catalysis

•• The reaction of other alcohols with the carbodiimide The reaction of other alcohols with the carbodiimide can also be performed at RT using Cu(OTf)can also be performed at RT using Cu(OTf)2 2 as as catalyst (3catalyst (3--5% w/w)5% w/w)

•• The copper catalyst removed form the resin using The copper catalyst removed form the resin using TMEDA. TMEDA.

•• Washing solution is blue coloured when copper is Washing solution is blue coloured when copper is present, it is easy to detect when the salt is present, it is easy to detect when the salt is completely removedcompletely removed

ROHCu(OTf)2

THF16 h

N N•cHex

NNH

O R

cHex

Page 25: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Supported Reagents (b). Supported Reagents -- PSPS--isoureasisoureas and and the synthesis of the synthesis of haloalkaneshaloalkanes

Stefano Stefano CrosignaniCrosignani, , Chem. Chem. CommunCommun. 2003, 260. 2003, 260--261.261.

Cl N

O

O

Cl

N

O

O

Br

NO2

Br

O

OCl

Br

H

HBr

R100% 88%

98%92%

89% 82%80%

H

H

ROH+

NNH

ORX

µω,100ο

5 min

µω,120-150ο

5 min

CH3COXCu(OTf)2THF

cHex

R

X= Cl, BrN N•

cHex

Page 26: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). (b). OxazolineOxazoline Synthesis via PSSynthesis via PS--CarbodiimideCarbodiimide

•• Products isolated in good yields and excellent Products isolated in good yields and excellent purities (>95%)purities (>95%)

•• Filtration on short alumina plug used to Filtration on short alumina plug used to remove copper catalystremove copper catalyst

R NH

OHO R

R' N

OR

R

R'Cu(OTf)2 (cat.), THF

1-µω, 100o, 15 min2-µω, 150o, 5 min

N N•cHex

+

N

OPh

Ph

N

OPh

N

OPh

Ph

70% 76% 84%

Page 27: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Synthesis of Polymer(b). Synthesis of Polymer--Supported IIDQSupported IIDQThree steps from Merrifield resin :Three steps from Merrifield resin :

3.99 3.99 mmol/gmmol/g 2.74 2.74 mmol/gmmol/g

ClN

HO K2CO3, KI

DMA, reflux, 6h

98%

O

N

1) iBuOCOCl, DiPEA

2) iBuOH, rt, 12 h.

DCM, 0°C, 3 h.

O

N

O O

O

88%

(overnight)

1.60 1.60 mmol/gmmol/g

86% overall conversion86% overall conversionNo requirement of a preNo requirement of a pre--activation stepactivation stepThe order of addition of the amine, acid or The order of addition of the amine, acid or coupling agent makes no difference to the coupling agent makes no difference to the efficiency of the coupling reaction efficiency of the coupling reaction

••

Page 28: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Polymer(b). Polymer--Supported IIDQ: ComparisonsSupported IIDQ: ComparisonsCoupling reagents tested :Coupling reagents tested : PSPS--IIDQ, HATU, PSIIDQ, HATU, PS--EDC, PSEDC, PS--

DCCDCC

0

10

20

30

40

50

60

70

80

90

100

1 2 3 4 5 6 7 8 9

Yiel

d (%

) PS-IIDQHATUPS-EDCPS-DCC

tert

tert--B

utylan

iline

Butylan

iline

Benzy

lamine

Benzy

lamine

PhGPhG--O

MeOMe

tert

tert--B

utylan

iline

Butylan

iline

Benzy

lamine

Benzy

lamine

PhGPhG--O

MeOMe

tert

tert--B

utylan

iline

Butylan

iline

Benzy

lamine

Benzy

lamine

PhGPhG--O

MeOMe

BocBoc--AibAib PhPh--CHCH22COCO22HH PhPh--COCO22HH

Page 29: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Polymer(b). Polymer--Supported IIDQSupported IIDQ

Page 30: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Polymer(b). Polymer--Supported IIDQSupported IIDQ

Characteristics :Characteristics :PSPS--IIDQ obtained easily in three steps from Merrifield resinIIDQ obtained easily in three steps from Merrifield resinHigh loading resin (1.4High loading resin (1.4--1.6 1.6 mmol/gmmol/g))Stable under normal laboratory storage conditionsStable under normal laboratory storage conditions

Efficiency:Efficiency:Works well in most cases of general amide bond formationWorks well in most cases of general amide bond formationTests at Tests at EvotecEvotec OAI on substituted OAI on substituted coumarinscoumarins confirmed the confirmed the best results over other supported coupling reagentsbest results over other supported coupling reagents

Limitation :Limitation :Hindered amines (Hindered amines (ProlineProline type) give type) give carbamatecarbamate species when species when coupling to carboxylic acids containing Methyl groups in the a coupling to carboxylic acids containing Methyl groups in the a positionposition

Page 31: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Multi(b). Multi--Component ReactionsComponent Reactions••IsonitrilesIsonitriles are important constituents of many are important constituents of many MCR’sMCR’sdue to their unusual “split reaction personality”due to their unusual “split reaction personality”

••Limited number commercially availableLimited number commercially available

••Unpleasant properties!Unpleasant properties!

MeO2C NC +O

+NH2

+BocNH CO2H

NO

HN CO2Me

Ph

O

Boc-NH

A. Domling - Current Opinion in Chem Biol

CHO

OCSSH H2N CO2Et

CN

MeO2C NMe2 N

SPh

Ph

N

S

MeO2C

Page 32: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Supported Reagents (b). Supported Reagents -- IsonitrileIsonitrileSynthesisSynthesis

••IsonitrilesIsonitriles are important constituents of many are important constituents of many MCR’sMCR’s due due to their unusual “split reaction personality”to their unusual “split reaction personality”••Development of new methods for the synthesis of Development of new methods for the synthesis of isocyanides using polymerisocyanides using polymer--supported reagentssupported reagents

Formic acid, DIC, Formic acid, DIC, DCM, 15 hrsDCM, 15 hrs

RHN H

O

R NH2

NH2NH

O

NH

NN N

H

O

NN

N

OH

R N+ C-

S Cl

O

O

Pyridine, DCMµW

BenzotriazoleBenzotriazole 55--carboxylic carboxylic acid, acid, HOBtHOBt, DIC, , DIC,

DCM/DMFDCM/DMF

DelphineDelphine LaunayLaunay TLTL

Page 33: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). (b). IsonitrileIsonitrile SynthesisSynthesis

Entry Formamide

Sulfonyl

chloride

resin

Pyridine

in DCM

Isocyanide

(% purity)

A 1 3 eq. 50 eq. 100 %

B 1 1.5 eq. 25 eq. 76 %

C 1 2 eq. 50 eq. 90 %

D 2 3 eq. 50 eq. 81 %

E 3 3 eq. 50 eq. 96 %

F 4 3 eq. 50 eq. 100 %

G 5 3 eq. 50 eq. 95 %

H 6 3 eq. 50 eq. 18 %

ClNMe2

SO2NH

MeOMeO

HN H

O

NH

H

O NH

H

OHN H

O

NH

H

O

O

O

O

O

HN

O

H

Microwave: 100ºC Microwave: 100ºC for 10 minutesfor 10 minutes..

Page 34: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(c). Heterogeneous Pd Catalysts(c). Heterogeneous Pd Catalysts

••Recover and reuse without loss of activityRecover and reuse without loss of activity

••Increase stability under air and/or moistureIncrease stability under air and/or moisture

••Compatible with most of solvents especially waterCompatible with most of solvents especially water

••Increase of activity for aryl halideIncrease of activity for aryl halide

Cost & availability: I < Br < Cost & availability: I < Br < ClClReactivity: I > Br > Reactivity: I > Br > ClCl

••Easy to separate and handleEasy to separate and handle

Page 35: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Interaction between vacant orbital of Pd and functionality Interaction between vacant orbital of Pd and functionality of polymer backbone e.g. of polymer backbone e.g. ππ--orbital of phenyl ring or carbonyl orbital of phenyl ring or carbonyl

groupgroup

Linear PSLinear PS(Mw 280,000)(Mw 280,000)

1. 1. CyclohexaneCyclohexane, 40 , 40 °°CC2. Cooled to 0 2. Cooled to 0 °°C C

3. Hardened with Hexane, RT3. Hardened with Hexane, RT4. Filter, Wash, and Dry4. Filter, Wash, and Dry

+ Pd catalystPd catalyst ((AngewAngew. Chem. Int. Ed. . Chem. Int. Ed. 20022002, , 40, 3469)40, 3469)

NH

HN

O

OilOil--inin--Water emulsion Water emulsion polymerizationpolymerization

NCO

NCOPolymethylenePolymethylenepolyphenylenepolyphenyleneisocyanateisocyanate + +

Pd(OAc)Pd(OAc)22

HH22O, O, --COCO22

(Chem. Chem. CommunCommun. . 20022002, 1132), 1132)

(2) (2) MicroencapsulationMicroencapsulation

(c). Heterogeneous Pd Catalysts(c). Heterogeneous Pd Catalysts

Ligand Ligand Pd L' n-1Pd-Ln

(1) Conventional method(1) Conventional method(a) Pd on activated carbon (Pd/C)(a) Pd on activated carbon (Pd/C)(b) Pd adsorption on inorganic supports (silica, alumina, etc)(b) Pd adsorption on inorganic supports (silica, alumina, etc)(c) Coordination of Pd catalyst via resin(c) Coordination of Pd catalyst via resin--bound ligandsbound ligands

Page 36: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(c). Resin(c). Resin--Captured (RC) PdCaptured (RC) PdPd catalyst could be entangled in the form of Pd catalyst could be entangled in the form of nanonanoparticles on the PSparticles on the PS--PEG resin and fixed by cross linkingPEG resin and fixed by cross linking

Interaction between Interaction between ππ--electrons of the PS and/or electrons of the PS and/or unshared electrons of the PEG and vacant unshared electrons of the PEG and vacant orbitalsorbitals of Pdof Pd

Pd0

OO

OO

OPd2+

OO

OO

OPd2+

H2NNH2

OO

OO

OO

O

OO

OO

O

HNON

H

O

OO

Pd2+

Pd2+

Pd0

Pd0

Pd0

OO

OO

O

OO

OO

O

H2NNH2

OO

Pd0

OO

OO

O

OO

OO

O

H2NNH2

OO

Pd0

Pd0

Pd0

Pd(OAc)2Toluene

Reflux in Toluene

ClO

ClO

0.36 0.36 mmolmmol of Pd/g of Pd/g based on Pd analysis based on Pd analysis

by ICPby ICP--AESAES

JACS, 2006JACS, 2006

Page 37: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

CrossCross--linking %linking %

Page 38: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

BrHN

O

Br

OB(OH)2 Catalysts O

HN

O

+

Pd captured by resin 99% 17%

Pd captured by resinfollowed by cross-linking (40%) 98% 4%

Pd/Alumina

Pd coordinated by resin-bound phosphine ligand

Pd Catalyst

98% 95%

>99% 85%

Pd/C 98% 95%

Yield (solution) Yield (solid)

(c). 3 Phase Reaction Test(c). 3 Phase Reaction Test

J. Am. Chem. Soc. J. Am. Chem. Soc. 20012001, 123, 10139, 123, 10139--1014010140.

Page 39: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Br B(OH)2+

CatalystNa2CO3

DME / WaterMW Heating

(c). Different Immobilised Pd Catalysts(c). Different Immobilised Pd Catalysts

The Pd content in the filtrate from The Pd content in the filtrate from I I was was 0.09 0.09 ppmppm based on elemental analysis using based on elemental analysis using

ICPICP--OES. OES.

PdI:NH

OHN

O2

NH

OP Pd

Cl

III:

Pd

NHOHN

O

II:

Activity of Activity of FiltrateFiltrate

Page 40: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

X B(OH)2R R+

K2CO3, WaterMW, 120 C, 5 min

Reactant Product Yield (%)

87

85

93

91

93

99

11

I

I

O I

S I

O2N Br

BrO

Cl

O

S

O2N

O

Page 41: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(c). Suzuki Reaction with RC Pd and (c). Suzuki Reaction with RC Pd and CrosslinkingCrosslinking

SO

OO

HO

OH

R1

Br

Br

R1

R2

R2

BHO

HO O

OHS

O

OO

HO

OH

R1R1

R2

R2

OOH

Br

+

Microwave, 120 ºC, 10 min,

28 (25)Mei-BuBromothylmol blue57 (56)HMeBromocresol purple41 (33)HBrBromophenol blue

yield (%)R2R1

Isolated yield of monoIsolated yield of mono--substituted products and substituted products and compared with yields obtained using homogeneous compared with yields obtained using homogeneous catalyst (Pd(OAc)catalyst (Pd(OAc)22) )

Page 42: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

2 3 4 5 6 7 8 9pH

Methyl Red

pH Indicator TransitionspH Indicator Transitions

Bromothymol Blue

Bromocresol Purple

Bromothymol Blue Derivative

SO

HO Br

OH

O

OO

OH

SO Br

HO Br

OO

OH <

pKa

Page 43: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

N NNO

OH

HO

OS

OH

Br

OO

HO

O

NH2H2N

H2N

HO

O

S

OH

Br

OO

NH

O

N NNO

HN

HN

O

CappingCappingby by acetylationacetylation

(Bromocresol Purple der)

(Methyl Red)

TFFH/TEA used as TFFH/TEA used as coupling agentscoupling agents

pHpH--Indicating ResinIndicating Resin

2 3 4 5 6 7 8 9pH

Methyl Red

Bromothymol BlueBromocresol Purple

Bromothymol Blue Derivative

Page 44: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

pH 1 7 953

Colour Change of Indicator Resin According to pHColour Change of Indicator Resin According to pH

Page 45: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(c). Recycling of RC Pd for Suzuki Reactions(c). Recycling of RC Pd for Suzuki Reactions

CH3O2C Br B(OH)2 CH3OC+TG-RC Pd Catalyst

K2CO3, WaterMW, 120 C, 5 min

98%98%94% (294% (2ndnd))92% (392% (3rdrd))95% (495% (4thth))90% (590% (5thth))96% (696% (6thth))

(isolated yields)(isolated yields)

Pd Pd NanoparticlesNanoparticles(Left) Before and (Right) After 6 (Left) Before and (Right) After 6

ReusesReuses

Page 46: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(b). Heterogeneous Pd Catalysts(b). Heterogeneous Pd Catalysts

••Recover and reuse without loss of activityRecover and reuse without loss of activity

••Increased stability under air and/or moistureIncreased stability under air and/or moisture

••Compatible with most of solvents including waterCompatible with most of solvents including water

••Easy to separate and handleEasy to separate and handle

Page 47: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

Resin PlugsResin Plugs

Resin compositesResin compositesPolystyrene resin and Polystyrene resin and

inert porous fillerinert porous filler

Page 48: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

FlowFlow--Through SynthesisThrough Synthesis

55--10 cartridges in a single 10 cartridges in a single ColumnColumn

Catalysts, Reagents, Catalysts, Reagents, Scavengers etc…Scavengers etc…

Page 49: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

(c). Plugs (c). Plugs –– Modular Resin Captured PdModular Resin Captured Pd

I R R

Pd plug, NaOtBu

TBAB, DMF/H 2O µW, 120°C, 15'

+

822.7COMe

94 6.7H

96 2.7Me

79 6.7NO2

940.7CF3

93 6.7 OMe

Isolated yield (%)Catalyst quantity (mol %)R

Page 50: Microwave Chemistry and Solid Phase Synthesis · (a). Peptide Chemistry and Microwave Heating N OH O NHBoc Fmoc O N NHBoc Fmoc 6 7 NH RINK PS 6 200 400 600 800 1000m/z 0 20 40 60

AcknowledgementsAcknowledgements

• •

The Bradley Group Christophe Portal

Jin Cho, Romain NajmanAntonio Fara, Juan Diaz-Mochon

BiotageBruno Linclau