Microbiomes corsi final3_2012
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Transcript of Microbiomes corsi final3_2012
Richard L. Corsi1, Hal Levin2, Jonathan Eisen3, and Kerry A. Kinney1
1. The University of Texas at Austin
2. microBEnet and Building Ecology Research Group
3. microBEnet - University of California, Davis
Microbiomes of Built Environments: 2011 Symposium Highlights & Workgroup Recommendations
Healthy Buildings 2012 - Brisbane, Australia
Indoor Air 2011: Symposium on June 8th / 9th, 2011 (Austin, Texas)– 9,
Symposium Overview
DAY 1
• Keynote: J. Craig Venter
• 15 podium speakers
Day 2
• State of Knowledge: Aino Nevalainen
• New Tools and Opportunities: Jonathan Eisen
• Need to think big: Jesse Ausubel
• Workshop
Sponsored by the Alfred P. Sloan Foundation
Workgroup Recommendations
1. Microorganisms & Building Materials
• Far more attention needed - interaction with materials
• Material properties (composition, porosity, water capacity)
• Surface temperature and humidity
• Microbial communities on damp materials
• Fungi, bacteria (100% of materials)
• Amoebae (20% of materials)
• Aged wood, gyp board, mineral wool
• Synergistic effects?
• Yli-Pirilä et al. (2004 & 2008)
2. Longitudinal Studies in Buildings
• How do microbial communities change over time and why?
• Changes (or controlled perturbations) in:
• Outdoor environmental conditions
• Indoor environmental conditions
• Building materials/furnishings
• Operations (HVAC, etc.)
• Maintenance (cleaning, etc.)
• Occupant loads / activities
U of Chicago – Center for Health Statistics http://healthstats.org/
3. Reference Genomes of Cultured Isolates
• Sequencing of “reference genomes” from cultured isolates
• Different types of microorganisms removed from buildings
• Valuable community resource
• Predicting functions of importance
• Interpretation of PCR and metagenomic
sequence data
4. Functioning of Microorganisms
• Cataloging is good, but not sufficient in and of itself
• Need to know what the microorganisms are doing
“You can observe a lot just by watching.” – Yogi Berra
5. Shared Buildings
• Several around the world are needed (different climate zones)
• Many benefits:
• Controlled and systematic research efforts
• International & interdisciplinary collaborations
• Compare sampling methods between teams
• Deeper exploration: environmental, building, occupant factors
• Facilitate proposal development
6. Human Occupants
• Humans are important sources of bacteria (Täubel et al., 2009)
• Mattresses: 69-88% of bacteria of human origin
• Floor dust: 45-55% of bacteria of human origin
• Spatial activity patterns & resuspension (e.g., Hospodsky et al., 2012)
• Research needed on behavior & activity effects
• Cleaning practices (how and how frequently, etc.)
• Surface cleaning, vacuum cleaning, etc.
• Microbial community variations / redistribution
• Occupant profiles
• Age, gender, culture, socioeconomics
• Psychology/personality
7. Non-Human Occupants
• Pets can be important sources of bacteria
• Canine contributions (Johansson et al., 2011)
• 2+ dogs: Strong predictor of streptomycetes & endotoxins
• Variations: outdoor/indoor pets versus indoor pets?
• Diet effects?
• Age effects?
• Cleaning effects?
Chloe Corsi outdoor/indoor Australian cattle dog
8. Effects of Climate Change
• How do indoor microbiomes change as climate changes?
• Direct impacts of climate change
• Heat waves, dust storms
• more intense rainfall, etc.
• Mitigation and adaptation effects on buildings
• Weatherization / tight envelope design
• Rapid implementation of green building materials
• New insulations, etc.
Griffith, Australia 2002
9. Metadata Consensus
• Standardized checklist(s) for researchers
• Sampling methodologies
• Environmental conditions
(what, when, where)
• Building design and layout
• Building ventilation methods
• HVAC system / components
• Building materials
• Building operation parameters
• Building maintenance (cleaning, etc.)
• Previous water challenges
• Flexibility – One size does not fit all!
50 oC
23 oC
13 oC
35 oC
18 oC18-32 oC
10
15
20
25
30
35
40
Tem
pe
ratu
re (
oC
)Difference between supply & attic ≈ 0 - 20 oC (68 oF)
Maximum difference can exceed 40 oC (104 oF)
Attic
IndoorOutdoor
Supply Vent
10. Microbial Communities and Chemicals
• Changes in surface chemistry via pH changes
• CO2, NOx, cleaners (HOCl, etc.)
• Chemicals deposited on surfaces
• Chemical transformations of surfaces
11. Citizen (building/microbial) Science
• Get general population excited and involved
• Sample collection in homes, schools, etc.
• Possibility of HVAC filters as integrated samplers
• Centralized analysis sites for “citizen samples”
• Metadata via questionnaire
12. Routine Surveillance Technologies
• Development & verification of new technologies
• Routine surveillance of indoor microorganisms
• If low cost – facilitate citizen science
Grand Challenge
1. How do we improve characterization/testing of existing and
new building materials & their influence on microbes
• Key properties & changes with time?
• Test protocols?
• Microbial communities?
2. How do we effectively build spatial and temporal variability
into field studies?
• Microbial sampling
• Building and environmental condition sampling
Design, operate, & maintain microbially-balanced, healthy buildings