Late night thoughts of a jet-lagged phylogeneticist

35
@rdmpage Late night thoughts of a jet-lagged phylogeneticist http:// iphylo.blogspot.com

description

Talk I gave as a "provocateur" at a NSF Ideas Lab on the tree of life

Transcript of Late night thoughts of a jet-lagged phylogeneticist

Page 1: Late night thoughts of a jet-lagged phylogeneticist

@rdmpage

Late night thoughts of a jet-lagged phylogeneticist

http://iphylo.blogspot.com

Page 2: Late night thoughts of a jet-lagged phylogeneticist

Why aren’t we there yet?

Page 3: Late night thoughts of a jet-lagged phylogeneticist

There is no “map of life”

http://vimeo.com/26210611

Page 4: Late night thoughts of a jet-lagged phylogeneticist

@itoworld @openstreetmap

Page 5: Late night thoughts of a jet-lagged phylogeneticist

@ben_fry

Page 6: Late night thoughts of a jet-lagged phylogeneticist

@rdmpage

Page 7: Late night thoughts of a jet-lagged phylogeneticist

Can we have a set of coordinates for the tree of life?

Page 8: Late night thoughts of a jet-lagged phylogeneticist

Seeing the forest

Page 9: Late night thoughts of a jet-lagged phylogeneticist
Page 10: Late night thoughts of a jet-lagged phylogeneticist

I want a Flickr for phylogeny

Page 11: Late night thoughts of a jet-lagged phylogeneticist
Page 12: Late night thoughts of a jet-lagged phylogeneticist
Page 13: Late night thoughts of a jet-lagged phylogeneticist

@blaiseaguera

Page 14: Late night thoughts of a jet-lagged phylogeneticist
Page 15: Late night thoughts of a jet-lagged phylogeneticist

My tree

Trees like this

Where is this tree?

Other trees near here

(data from http://phylota.net and GenBank)

Page 16: Late night thoughts of a jet-lagged phylogeneticist

Beyond trees

Page 17: Late night thoughts of a jet-lagged phylogeneticist
Page 18: Late night thoughts of a jet-lagged phylogeneticist

What do insects live on?

Host info from

GenBank sequence

Page 19: Late night thoughts of a jet-lagged phylogeneticist

What lives on insects?

Page 20: Late night thoughts of a jet-lagged phylogeneticist

http://iphylo.blogspot.com/2011/03/visualising-symbiome-hosts-parasites.html

Page 21: Late night thoughts of a jet-lagged phylogeneticist

Connecting the tree to other data

Page 22: Late night thoughts of a jet-lagged phylogeneticist

The Semantic web:

“The future of the web… and always will be” – Peter Norvig

Page 23: Late night thoughts of a jet-lagged phylogeneticist
Page 24: Late night thoughts of a jet-lagged phylogeneticist

0, 1, n

There are only three numbers in computer science:

@stefanomaz

http://www.betaversion.org/~stefano/linotype/news/304/

Page 25: Late night thoughts of a jet-lagged phylogeneticist

Links built by community, editable, versioned

Page 26: Late night thoughts of a jet-lagged phylogeneticist

Wikis

Page 27: Late night thoughts of a jet-lagged phylogeneticist

GeneWiki

Huss et al. 2008 doi:10.1371/journal.pbio.0060175

Page 28: Late night thoughts of a jet-lagged phylogeneticist

http://iphylo.org/linkout

Page 29: Late night thoughts of a jet-lagged phylogeneticist

When building shared resources carrots beat sticks

Page 30: Late night thoughts of a jet-lagged phylogeneticist

Carrots beat sticks

Page 31: Late night thoughts of a jet-lagged phylogeneticist
Page 32: Late night thoughts of a jet-lagged phylogeneticist
Page 33: Late night thoughts of a jet-lagged phylogeneticist
Page 34: Late night thoughts of a jet-lagged phylogeneticist
Page 35: Late night thoughts of a jet-lagged phylogeneticist

To build community resource ensure you have an answer for this:

“what’s in it for me?”