Freie Universität Berlin – China Scholarship Council FUB ...
Howtowrite a greatthesis - Freie Universität › stud › mentoring › bioinf › ...that will...
Transcript of Howtowrite a greatthesis - Freie Universität › stud › mentoring › bioinf › ...that will...
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How to writea great thesis
Based on slides by Simon Peyton Jones, Tine Wirenfeldt Jensen, Tamara O’Connor, Mark Matthews
Tim Conrad
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Demystifying Dissertation Writing
Peg Boyle Single
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Why bother?
Fallacy
we write theses, papers and give talks mainly to impress others, gain recognition, and get promoted
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Good papers and talks are a
fundamental part of research excellence
(yes, that is also true for your theses!)
Why bother?
Fallacy
we write theses, papers and give talks mainly to impress others, gain recognition, and get promoted
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The purpose of your thesis is...
To convey your idea
...from your head to your reader’s head
Everything serves this single goal
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The purpose of your thesis is not...
To describe the WizWoz system
Your reader does not have a WizWoz
She is primarily interested in re-usable brain-stuff, not executable artefacts
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Conveying the idea
• Here is a problem• It’s an interesting problem• It’s an unsolved problem• Here is my idea• My idea works (details, data)• Here’s how my idea compares to
other people’s approaches
I wish I knew how to solve that!
I see how that works. Ingenious!
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Brown‘s 8 Questions
1. Who are the intended readers?2. What did you do? 3. Why did you do it? 4. What happened?5. What do the results mean in theory?6. What do the results mean in practice? 7. What is the key benefit for readers?8. What remains unresolved?
(Brown 1994/95)
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Structure
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Structure
• Abstract• Introduction• The problem• My idea• The details• Related work• Conclusions and further work
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Structure (more detailed)
• Title Page• Table of Contents• List of Tables• List of Figures • Abstract• Declaration• Acknowledgments
• Introduction• Methodology • Results• Discussion• Literature Review• Conclusions• Future Work• Appendices
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• Outline• Generic thesis structure• Allocate word count for each section• Design sub-sections• Table of contents• Write in layers
Structure (how to get there)
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A strong title orients readers to your area of work
Effects of Humidityon the Growth of Avalanches
Effects of Humidityon the Growth
of Electron Avalanchesin Electrical Gas
Discharges
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Studies on the Electrodeposition of Lead on Copper
Effects of Rhodamine-Bon the Electrodeposition
of Lead on Copper
A strong title orients readers to your area of work
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Structure
• Abstract• Introduction• The problem• My idea• The details• Related work• Conclusions and further work
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The abstract
• I usually write the abstract last• Often used by referee to structure the evaluation report• Four sentences [Kent Beck]
1. State the problem2. Say why it’s an interesting problem3. Say what your solution achieves4. Say what follows from your solution
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SPSE Technique
• Situation: Describe the general background / setting in which your research takes place
• Problem: Describe a problem that the research addresses.• Solution: What did you do or try to address this problem?• Evaluation: How did you evaluate the proposed solution
and what were the results?
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This thesis describes a new inertial navigation system for mapping oil and gas wells. In this thesis, we will compare the mapping accuracy and speed for this new system against the accuracy and speed for conventional systems.
Descriptive
This thesis describes a new inertial navigation system that will increase the mapping accuracy of oil wells by a factor of ten. The new system uses three-axis navigation that protects sensors from high-spin rates. The system also processes its information by Kalman filtering (a statistical sampling technique) in an on-site computer. Test results show the three-dimensional location accuracy is within 0.1 meters for every 100 meters of well depth, an accuracy ten times greater than conventional systems.
Informative
Two Main Approaches
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Structure
• Abstract• Introduction• The problem• My idea• The details• Related work• Conclusions and further work
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The introduction
1. Describe the problem2. Set the necessary background3. State your contributions...and that is all
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Describe the problem
Use an example to introduce
the problem
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importance
Describe the problem
This thesis presents a design for a platinum catalytic igniter in hydrogen-air mixtures. This igniter has application in nuclear reactors. One danger at a nuclear reactor is a loss-of-coolant accident. Such an accident can produce large quantities of hydrogen gas when hot water and steam react with zirconium fuel rods. In a serious accident, the evolution of hydrogen may be so rapid that it produces an explosive hydrogen-air mixture in the reactor containment building. This mixture could breach the containment walls and allow radiation to escape.
Our method to eliminate this danger is to intentionally ignite the hydrogen-air mixture at concentrations below those for which any serious damage might result.
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State your contributions
• Write the list of contributions first• The list of contributions drives the entire
thesis: the thesis substantiates the claims you have made
• Reader thinks “gosh, if they can really deliver this, that’s be exciting; I’d better read on”
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State your contributionsBulleted list of contributions
Do not leave the reader to guess what
your contributions are!
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State your contributions. CLEARLY!
We describe the WizWozsystem. It is really cool.
We give the syntax and semantics of a language that supports concurrent processes (Section 3). Its innovative features are...
We study its properties We prove that the type system is sound, and that type checking is decidable (Section 4)
We have used WizWoz in practice
We have built a GUI toolkit in WizWoz, and used it to implement a text editor (Section 5). The result is half the length of the Java version.
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No “rest of this thesis is...”
• Not:
• Instead, use forward references from the narrative in the introduction.
The introduction (including the contributions) should survey the whole thesis, and therefore forward reference every important part.
“The rest of this thesis is structured as follows. Section 2 introduces the problem. Section 3 ... Finally, Section 8 concludes”.
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Possible sections in this chapter
1. Background2. Research Problem3. Methodology (or method to be used)4. Thesis Roadmap / Overview / Outline5. Definitions6. Orthogonal Issues7. Conclusions
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Structure
• Abstract• Introduction• The problem• My idea• The details• Related work• Conclusions and further work
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No related work yet!
Related work
Your reader Your idea
We adopt the notion of transaction from Brown [1], as modified for distributed systems by White [2], using the four-phase interpolation algorithm of Green [3]. Our work differs from White in our advanced revocation protocol, which deals with the case of priority inversion as described by Yellow [4].
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No related work yet
• Problem 1: describing alternative approaches gets between the reader and your idea
• Problem 2: the reader knows nothing about the problem yet; so your (carefully trimmed) description of various technical tradeoffs is absolutely incomprehensible
I feel tired
I feel stupid
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Instead...
Concentrate single-mindedly on a narrative that
• Describes the problem, and why it is interesting• Describes your idea• Defends your idea, showing how it solves the problem,
and filling out the details
On the way, cite relevant work in passing, but defer discussion to the end
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The payload of your thesis
Consider a bufircuated semi-lattice D, over a hyper-modulated signature S. Suppose pi is an element of D. Then we know for every such pithere is an epi-modulus j, such that pj < pi.
Sounds impressive...but
Sends readers to sleep
In a thesis you MUST provide the details, but FIRST convey the idea
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The payload of your thesis
Introduce the problem, and your idea, using
and only then present the general case
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Using examples
Example right away
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Conveying the idea
• Explain it as if you were speaking to someone using a whiteboard
• Conveying the intuition is primary, not secondary• Once your reader has the intuition, she can follow the
details (but not vice versa)• Even if she skips the details, she still takes away
something valuable
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Solving the Research Question
• You need to convince the reader that the research question has been resolved
• Only discuss your research that pertains to the resolution of the problem
• If you worked on techniques that were dead-ends, don't bother including these in the discussion (unless it is somehow relevant to the solution).
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Evidence
• Your introduction makes claims• The body of the thesis provides evidence to
support each claim• Check each claim in the introduction, identify
the evidence, and forward-reference it from the claim
• Evidence can be: analysis and comparison, theorems, measurements, case studies
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Solving the Research Question
• Record any limitations, assumptions, etc. in methods used
• Report exactly under what conditions the results were obtained
• If you wrote computer programs to solve the problem -> record hardware, software versions, language versions, operation system versions, any relevant environmental configurations
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Choose a logicalstrategy
Make sectionsand subsections
HeadingSubheadingSubheading
HeadingSubheadingSubheadingSubheading
Heading
Strategies for the main part
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Chronological
[Maizels, 2001]
Spatial
[Pratt & Whitney, 2000]
Strategies for the main part
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Parallel Parts
Corel Corporation
Flow
Strategies for the main part
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Non-ParallelNon-Descriptive
IntroductionBackgroundMarx GeneratorsLine PulseBeam GenerationTransporting BeamPelletsResultsConclusions
ParallelDescriptive
Introduction
Past Designs for Particle Beam Fusion
New Design for Particle Beam FusionCharging Marx GeneratorsForming Line PulseGenerating Particle BeamTransporting Particle BeamIrradiating Deuterium-Tritium Pellets
Results of New Design
Conclusions and Recommendations
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New Design for Particle Beam Fusion
Charging Marx Generators
Generating Particle Beam
Pellets
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New Design for Particle Beam Fusion
Charging Marx Generators
Generating Particle Beam
Irradiating Deuterium-Tritium Pellets
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Performance ofthe Solar One Receiver
Introduction
Steady State EfficiencyAverage Efficiency
Start-Up TimeOperation TimeOperation During Cloud Transients
Panel Mechanical SupportsTube LeaksConclusion
Performance ofthe Solar One Receiver
IntroductionReceiver’s Efficiency
Steady State EfficiencyAverage Efficiency
Receiver’s Operation CycleStart-Up TimeOperation TimeOperation During Cloud Transients
Receiver’s Mechanical WearPanel Mechanical SupportsTube Leaks
Conclusion
Secondary Structure/Headings
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Structure
• Abstract• Introduction• The problem• My idea• The details• Related work• Conclusions and further work
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Related work
Fallacy To make my work look good, I have to make other people’s work look bad
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The truth: credit is not like money
Giving credit to others does not diminish the credit you get from your thesis
Warmly acknowledge people who have helped you
Be generous to the competition. “In his inspiring paper [Foo98] Foogle shows.... We develop his foundation in the following ways...”
Acknowledge weaknesses in your approach
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Credit is not like money
Failing to give credit to others can kill your thesis
If you imply that an idea is yours, and the referee knows it is not, then either
You don’t know that it’s an old idea (bad)
You do know, but are pretending it’s yours (very bad)
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Structure
• Abstract• Introduction• The problem• My idea• The details• Related work• Conclusions and further work
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Analyze results from overall perspective
Conclusions
Analysis of Results
Several options:Make recommendationsDiscuss future workRepeat limitations
Future Perspective
Strong ending
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Language & Style
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Visual structure
• Give strong visual structure to your text using • sections and sub-sections• bullets• italics• laid-out code
• Find out how to draw pictures, and use them
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Visual structure
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NO YESIt can be seen that... We can see that...
34 tests were run We ran 34 tests
These properties were thought desirable
We wanted to retain these properties
It might be thought that this would be a type error
You might think this would be a type error
The passive voice is “respectable” but it DEADENS your thesis. Avoid it at all costs.
“We” = you and the reader
“We” = the authors
“You” = the reader
Use the active voice
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NO YESThe object under study was
displaced horizontally The ball moved sideways
On an annual basis Yearly
Endeavour to ascertain Find out
It could be considered that the speed of storage reclamation left something to be desired
The garbage collector was really slow
Use simple, direct language
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Rule of Three
• Within each chapter, repeat 3 times• Intro. We will show ..• Body. Show them ..• Concl. We have shown ..
• Within thesis, repeat contributions 3 times• Intro chapter• Main chapters• Conclusion chapter
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Link chapters together
Chapter NIntroduction N.1As has been discussed in the previous chapter ...
Conclusion N.XIn this chapter, the following topics were
discussed...equipped with this information, in the next chapter it will be investigated how to apply this in ...
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More…
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The process
• Start early. Very early. • A hastily-written thesis decreases your overall mark.• Theses are like wine: they need time to mature
• Use a backup system (SVN / GitHub)
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Getting help
• Experts are good• Non-experts are also very good• Each reader can only read your thesis for the first time once!
So use them carefully• Explain carefully what you want (“I got lost here” is much
more important than “wibble is mis-spelt”.)
Get your thesis read by as many friendly guinea pigs as possible
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Listening to your reviewers
Every review is gold dustBe (truly) grateful for criticism as well
as praise
This is really, really, really hard
But it’s really, really, really, really, really, really important
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Listening to your reviewers
• Read every criticism as a positive suggestion for something you could explain more clearly
• DO NOT respond “you stupid person, I meant X”. Fix the thesis so that X is apparent even to the stupidest reader.
• Thank them warmly. They have given up their time for you.
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Basic stuff
• Submit by the deadline• Keep to the length restrictions
• Do not narrow the margins• Do not use 6pt font
• On occasion, supply supporting evidence (e.g. experimental data, a written-out proof or a script)in an appendix
• Always use a spell checker
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What are examiners looking for?
• Review of literature• Methodology• Presentation of Results• Application to biology• Discussion and Conclusions
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Tips for successful writing
1. Plan to write regularly2. Make a time plan and stick to it3. Write up section as soon as it’s ready4. Stop writing at a point where you could go on – makes it easier to
start next time!5. Decide where and when best for you6. Don’t write when exhausted7. Seek support
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Summary
If you remember nothing else:• Identify your key idea• Make your contributions explicit• Use examples
http://www.phrasebank.manchester.ac.uk/