EFSA Data Collection using SSD2 for pesticide monitoring results Jens Hinge Andersen...

EFSA Data Collection using SSD2for pesticide monitoring results

Jens Hinge Andersen ([email protected])

Dept. of Risk Assessment and NutritionNational Food Institute, DTU Food

(www.food.dtu.dk)

11th Nordic Pesticide Residue Workshop 1 – 2 June 2015, Tallinn, Estonia

2 DTU Food – Technical University of Denmark

Outline

• SSD: Standard Sample Description

Using SSD for pesticide monitoring results:• Some challenges using SSD1• Moving from SSD1 to SSD2• Some challenges using SSD2• Some potential improvements using SSD2

• Implementation of FoodEx2 in DK



SSD: Standard Sample Description

• EFSA collects data from ⁻ National authorities ⁻ Research institutions⁻ Industry

• In a standardised data format on⁻ Pesticide residues ⁻ Chemical contaminants⁻ Additives⁻ Zoonosis⁻ Veterinary drugs⁻ Food consumption

SSD1

SSD2FoodEx2



Element LabelLaboratory sample codeLaboratory sub-sample codeLanguageCountry of samplingArea of samplingCountry of origin of the productArea of origin of the productArea of origin for fisheries or aquaculture activities codeArea of origin for fisheries or aquaculture activities textCountry of processingArea of processingEFSA Product CodeProduct codeProduct full text descriptionMethod of productionPackagingProduct treatmentBrand nameManufacturerIngredientsProduct commentYear of productionMonth of productionDay of productionYear of expiryMonth of expiryDay of expiryYear of samplingMonth of samplingDay of samplingSampling programme codeProgramme legal referenceSampling strategyType of sampling programSampling methodNumber of samplesLot sizeLot size unitSampling pointLaboratoryLaboratory accreditationLaboratory countryLocal organisationLocal organisation countryResult codeYear of analysisMonth of analysisDay of analysisEFSA Parameter CodeParameter codeParameter textType of parameterAnalytical method reference codeAnalytical method codeAnalytical method textAccreditation procedure for the analytical methodResult unitResult LODResult LOQCC alphaCC betaResult valueResult value recoveryResult value corrected for recoveryResult value uncertainty Standard deviationResult value uncertaintyPercentage of moisture in the original samplePercentage of fat in the original sampleExpression of resultResult qualitative valueType of result Legal Limit for the resultType of legal limitEvaluation of the resultAction TakenComment of the result

SSD1Element LabelLocal organisation identification codeLocal organisation countryLocal organisation additional informationSampling programme identification codeProgramme legal referenceSampling strategyProgramme type Sampling methodSamplerSampling pointAdditional sampling program informationSampling event identification codeSampling unit typeSampling unit sizeSampling unit size unitOther sampling unit identificationsAdditional sampling event informationSample taken identification codeReporting countryCountry of samplingArea of samplingReporting yearYear of samplingMonth of samplingDay of samplingSample taken sizeSample taken size unitAdditional Sample taken informationType of matrixCoded description of the matrix of the sample takenText description of the matrix of the sample takenCountry of origin of the sample takenArea of origin of the sample takenArea of origin for fisheries or aquaculture activities code of the sample takenArea of origin for fisheries or aquaculture activities text of the sample takenCountry of processing of the sample takenArea of processing of the sample takenAdditional information on the matrix sampledSample analysed identification codeSample analysis reference timeYear of analysisMonth of analysisDay of analysisAdditional information on the sample analysedCoded description of the analysed matrixText description of the matrix analysedAdditional information on the analysed matrix Sample analysed portion sequenceSample analysed portion sizeSample analysed portion size unitAdditional information on the sample analysed portion Isolate identificationCoded description of the isolateText description of the isolateAdditional information on the isolateLaboratory identification codeLaboratory accreditationLaboratory countryAdditional information on the laboratoryType of parameterCoded description of the parameterParameter text Analytical method identificationAnalytical method reference codeAnalytical method typeAnalytical method codeAnalytical method textAdditional information on the analytical methodResult identification codeAccreditation procedure for the analytical methodResult unitResult LODResult LOQResult lower limit of the working rangeResult upper limit of the working rangeCC alphaCC betaResult valueResult value recovery rateResult value corrected for recoveryExpression of result percentageExpression of result typeResult qualitative valueType of result Result value uncertaintyResult value uncertainty Standard deviationResult reference identificationAdditional information on the resultLimit for the result evaluation Limit for the result evaluation (High limit)Type of limit for the result evaluationEvaluation of the resultAction TakenAdditional information on the evaluationlocalOrgInfo.CommentprogInfo.CommentprogInfo.Verification of Salmonella targetprogInfo.Number of flocks/herds under control programprogInfo.Number of animals under control programprogInfo.Total number of samples testedprogInfo.Total number of sampling units testedsampUnitIds.Animal identification codesampUnitIds.Flock/herd identification codesampUnitIds.Batch/ slaughter batch identification codesampUnitIds.Sampling Holding identification codesampUnitIds.Slaughterhouse identification codesampUnitIds.Sampling plant identification codesampEventInfo.CommentsampEventInfo.Status of the holding/ herdsampEventInfo.Vaccination status of the animal or flock/ herdsampEventInfo.Medication status of the animal or flock/ herdsampEventInfo.Country of birthsampEventInfo.Year of slaughteringsampEventInfo.Month of slaughteringsampEventInfo.Day of slaughteringsampEventInfo.Country of slaughteringsampInfo.Arrival YearsampInfo.Arrival MonthsampInfo.Arrival DaysampMatCode.Building hierarchysampMatCode.SourcesampMatCode.Part-naturesampMatCode.Physical-statesampMatCode.IngredientsampMatCode.Surrounding-mediumsampMatCode.Fat-contentsampMatCode.Sweetening-agentsampMatCode.Fortification-agentsampMatCode.Qualitative-infosampMatCode.Alcohol-contentsampMatCode.Dough-MasssampMatCode.Cooking-method[1]sampMatCode.Final-preparation[2]sampMatCode.Preservation-technique[3]sampMatCode.Treatment-modifying- structure-or-nature[4]sampMatCode.Extent-of-cookingsampMatCode.Packaging-formatsampMatCode.Packaging-materialsampMatCode.Part-consumed-analysedsampMatCode.Production-methodsampMatCode.Preparation-production-placesampMatCode.Target-consumersampMatCode.Intended-usesampMatCode.Risky-IngredientsampMatCode.Generic-termsampMatCode.RPC-source-of- derivativessampMatCode.ProcesssampMatCode.Purpose-of-raisingsampMatCode.Reproductive-levelsampMatCode.Animal-age-classsampMatCode.GendersampMatCode.Food-additive- legislative-classsampMatInfo.Brand namesampMatInfo.ManufacturersampMatInfo.CommentsampMatInfo.Year of productionsampMatInfo.Month of productionsampMatInfo.Day of productionsampMatInfo.Year of expirysampMatInfo.Month of expirysampMatInfo.Day of expirysampAnInfo.Completion year of analysissampAnInfo.Completion month of analysissampAnInfo.Completion day of analysissampAnInfo.CommentAnMatCode.Building hierarchyAnMatCode.SourceAnMatCode.Part-natureAnMatCode.Physical-stateAnMatCode.IngredientAnMatCode.Surrounding-mediumAnMatCode.Fat-contentAnMatCode.Sweetening-agentAnMatCode.Fortification-agentAnMatCode.Qualitative-infoAnMatCode.Alcohol-contentAnMatCode.Dough-MassAnMatCode.Cooking-method[5]AnMatCode.Final-preparation[6]AnMatCode.Preservation-technique[7]AnMatCode.Treatment-modifying- structure-or-nature[8]AnMatCode.Extent-of-cookingAnMatCode.Packaging-formatAnMatCode.Packaging-materialAnMatCode.Part-consumed-analysedAnMatCode.Production-methodAnMatCode.Preparation-production-placeAnMatCode.Target-consumerAnMatCode.Intended-useAnMatCode.Risky-IngredientAnMatCode.Generic-termAnMatCode.RPC-source-of- derivativesAnMatCode.ProcessAnMatCode.Purpose-of-raisingAnMatCode.Reproductive-levelAnMatCode.Animal-age-classAnMatCode.GenderAnMatCode.Food–additive- legislative-classanMatInfo.Additional information on the matrix analysedanPortInfo.Additional information on the sample analysed portionisolParamCode .IsolateisolInfo.Isolation yearisolInfo.Isolation monthIsolInfo.Isolation dayisolInfo.Additional information on the isolatelabInfo.Total number of isolates available in the laboratory labInfo.CommentparamCode.base parameterparamCode.ESBL phenotypeparamCode.AMPC phenotypeparamCode.Carbapenemase phenotypeparamCode.Synergy testanMethCode.Analytical method codeanMethCode.Sample introductionanMethInfo.Disk concentrationanMethInfo.Disk diameteranMethInfo.Experiment TypeanMethInfo.Method sensitivityanMethInfo.Method specificityanMethInfo.Contact timeanMethInfo.Contact temperatureanMethInfo.CommentexprResPerc.Percentage of fatexprResPerc.Percentage of moisture exprResPerc.Percentage of alcoholresRefId.Attachment identifcationresRefId.Lane referenceresInfo.Performed CC for MRSA characterisationresInfo.Performed MLST MRSA characterisationresInfo.Result VectorresInfo.Reference Type by Data ProviderresInfo.Reference Type by CuratorresInfo.CommentevalInfo.Sample analysed assessmentevalInfo.Sample taken assessmentevalInfo.Sampling event evaluationevalInfo.Comment

SSD2Element Label

Laboratory sample codeLaboratory sub-sample codeLanguageCountry of samplingArea of samplingCountry of origin of the productArea of origin of the productArea of origin for fisheries or aquaculture activities codeArea of origin for fisheries or aquaculture activities textCountry of processingArea of processingEFSA Product CodeProduct codeProduct full text descriptionMethod of productionPackagingProduct treatmentBrand nameManufacturerIngredientsProduct commentYear of productionMonth of productionDay of productionYear of expiryMonth of expiryDay of expiryYear of samplingMonth of samplingDay of samplingSampling programme codeProgramme legal referenceSampling strategyType of sampling programSampling methodNumber of samplesLot sizeLot size unitSampling pointLaboratoryLaboratory accreditationLaboratory countryLocal organisationLocal organisation countryResult codeYear of analysisMonth of analysisDay of analysisEFSA Parameter CodeParameter codeParameter textType of parameterAnalytical method reference codeAnalytical method codeAnalytical method textAccreditation procedure for the analytical methodResult unitResult LODResult LOQCC alphaCC betaResult valueResult value recoveryResult value corrected for recoveryResult value uncertainty Standard deviationResult value uncertaintyPercentage of moisture in the original samplePercentage of fat in the original sampleExpression of resultResult qualitative valueType of result Legal Limit for the resultType of legal limitEvaluation of the resultAction TakenComment of the result

Element LabelLaboratory sample codeLaboratory sub-sample codeLanguageCountry of samplingArea of samplingCountry of origin of the productArea of origin of the productArea of origin for fisheries or aquaculture activities codeArea of origin for fisheries or aquaculture activities textCountry of processingArea of processingEFSA Product CodeProduct codeProduct full text descriptionMethod of productionPackagingProduct treatmentBrand nameManufacturerIngredientsProduct commentYear of productionMonth of productionDay of productionYear of expiryMonth of expiryDay of expiryYear of samplingMonth of samplingDay of samplingSampling programme codeProgramme legal referenceSampling strategyType of sampling programSampling methodNumber of samplesLot sizeLot size unitSampling pointLaboratoryLaboratory accreditationLaboratory countryLocal organisationLocal organisation countryResult codeYear of analysisMonth of analysisDay of analysisEFSA Parameter CodeParameter codeParameter textType of parameterAnalytical method reference codeAnalytical method codeAnalytical method textAccreditation procedure for the analytical methodResult unitResult LODResult LOQCC alphaCC betaResult valueResult value recoveryResult value corrected for recoveryResult value uncertainty Standard deviationResult value uncertaintyPercentage of moisture in the original samplePercentage of fat in the original sampleExpression of resultResult qualitative valueType of result Legal Limit for the resultType of legal limitEvaluation of the resultAction TakenComment of the result

Element LabelLaboratory sample codeLanguageCountry of samplingCountry of origin of the productProduct codeProduct full text descriptionMethod of productionProduct treatmentProduct commentYear of samplingSampling programme codeProgramme legal referenceSampling strategyType of sampling programSampling methodSampling pointLaboratoryLaboratory accreditationResult codeYear of analysisParameter codeParameter textType of parameterResult unitResult valueResult value recoveryResult value uncertainty Standard deviationPercentage of fat in the original sampleExpression of resultType of result Evaluation of the resultAction TakenComment of the result

Element LabelLocal organisation identification codeLocal organisation countryLocal organisation additional informationSampling programme identification codeProgramme legal referenceSampling strategyProgramme type Sampling methodSamplerSampling pointAdditional sampling program informationSampling event identification codeSampling unit typeSampling unit sizeSampling unit size unitOther sampling unit identificationsAdditional sampling event informationSample taken identification codeReporting countryCountry of samplingArea of samplingReporting yearYear of samplingMonth of samplingDay of samplingSample taken sizeSample taken size unitAdditional Sample taken informationType of matrixCoded description of the matrix of the sample takenText description of the matrix of the sample takenCountry of origin of the sample takenArea of origin of the sample takenArea of origin for fisheries or aquaculture activities code of the sample takenArea of origin for fisheries or aquaculture activities text of the sample takenCountry of processing of the sample takenArea of processing of the sample takenAdditional information on the matrix sampledSample analysed identification codeSample analysis reference timeYear of analysisMonth of analysisDay of analysisAdditional information on the sample analysedCoded description of the analysed matrixText description of the matrix analysedAdditional information on the analysed matrix Sample analysed portion sequenceSample analysed portion sizeSample analysed portion size unitAdditional information on the sample analysed portion Isolate identificationCoded description of the isolateText description of the isolateAdditional information on the isolateLaboratory identification codeLaboratory accreditationLaboratory countryAdditional information on the laboratoryType of parameterCoded description of the parameterParameter text Analytical method identificationAnalytical method reference codeAnalytical method typeAnalytical method codeAnalytical method textAdditional information on the analytical methodResult identification codeAccreditation procedure for the analytical methodResult unitResult LODResult LOQResult lower limit of the working rangeResult upper limit of the working rangeCC alphaCC betaResult valueResult value recovery rateResult value corrected for recoveryExpression of result percentageExpression of result typeResult qualitative valueType of result Result value uncertaintyResult value uncertainty Standard deviationResult reference identificationAdditional information on the resultLimit for the result evaluation Limit for the result evaluation (High limit)Type of limit for the result evaluationEvaluation of the resultAction TakenAdditional information on the evaluationlocalOrgInfo.CommentprogInfo.CommentprogInfo.Verification of Salmonella targetprogInfo.Number of flocks/herds under control programprogInfo.Number of animals under control programprogInfo.Total number of samples testedprogInfo.Total number of sampling units testedsampUnitIds.Animal identification codesampUnitIds.Flock/herd identification codesampUnitIds.Batch/ slaughter batch identification codesampUnitIds.Sampling Holding identification codesampUnitIds.Slaughterhouse identification codesampUnitIds.Sampling plant identification codesampEventInfo.CommentsampEventInfo.Status of the holding/ herdsampEventInfo.Vaccination status of the animal or flock/ herdsampEventInfo.Medication status of the animal or flock/ herdsampEventInfo.Country of birthsampEventInfo.Year of slaughteringsampEventInfo.Month of slaughteringsampEventInfo.Day of slaughteringsampEventInfo.Country of slaughteringsampInfo.Arrival YearsampInfo.Arrival MonthsampInfo.Arrival DaysampMatCode.Building hierarchysampMatCode.SourcesampMatCode.Part-naturesampMatCode.Physical-statesampMatCode.IngredientsampMatCode.Surrounding-mediumsampMatCode.Fat-contentsampMatCode.Sweetening-agentsampMatCode.Fortification-agentsampMatCode.Qualitative-infosampMatCode.Alcohol-contentsampMatCode.Dough-MasssampMatCode.Cooking-method[1]sampMatCode.Final-preparation[2]sampMatCode.Preservation-technique[3]sampMatCode.Treatment-modifying- structure-or-nature[4]sampMatCode.Extent-of-cookingsampMatCode.Packaging-formatsampMatCode.Packaging-materialsampMatCode.Part-consumed-analysedsampMatCode.Production-methodsampMatCode.Preparation-production-placesampMatCode.Target-consumersampMatCode.Intended-usesampMatCode.Risky-IngredientsampMatCode.Generic-termsampMatCode.RPC-source-of- derivativessampMatCode.ProcesssampMatCode.Purpose-of-raisingsampMatCode.Reproductive-levelsampMatCode.Animal-age-classsampMatCode.GendersampMatCode.Food-additive- legislative-classsampMatInfo.Brand namesampMatInfo.ManufacturersampMatInfo.CommentsampMatInfo.Year of productionsampMatInfo.Month of productionsampMatInfo.Day of productionsampMatInfo.Year of expirysampMatInfo.Month of expirysampMatInfo.Day of expirysampAnInfo.Completion year of analysissampAnInfo.Completion month of analysissampAnInfo.Completion day of analysissampAnInfo.CommentAnMatCode.Building hierarchyAnMatCode.SourceAnMatCode.Part-natureAnMatCode.Physical-stateAnMatCode.IngredientAnMatCode.Surrounding-mediumAnMatCode.Fat-contentAnMatCode.Sweetening-agentAnMatCode.Fortification-agentAnMatCode.Qualitative-infoAnMatCode.Alcohol-contentAnMatCode.Dough-MassAnMatCode.Cooking-method[5]AnMatCode.Final-preparation[6]AnMatCode.Preservation-technique[7]AnMatCode.Treatment-modifying- structure-or-nature[8]AnMatCode.Extent-of-cookingAnMatCode.Packaging-formatAnMatCode.Packaging-materialAnMatCode.Part-consumed-analysedAnMatCode.Production-methodAnMatCode.Preparation-production-placeAnMatCode.Target-consumerAnMatCode.Intended-useAnMatCode.Risky-IngredientAnMatCode.Generic-termAnMatCode.RPC-source-of- derivativesAnMatCode.ProcessAnMatCode.Purpose-of-raisingAnMatCode.Reproductive-levelAnMatCode.Animal-age-classAnMatCode.GenderAnMatCode.Food–additive- legislative-classanMatInfo.Additional information on the matrix analysedanPortInfo.Additional information on the sample analysed portionisolParamCode .IsolateisolInfo.Isolation yearisolInfo.Isolation monthIsolInfo.Isolation dayisolInfo.Additional information on the isolatelabInfo.Total number of isolates available in the laboratory labInfo.CommentparamCode.base parameterparamCode.ESBL phenotypeparamCode.AMPC phenotypeparamCode.Carbapenemase phenotypeparamCode.Synergy testanMethCode.Analytical method codeanMethCode.Sample introductionanMethInfo.Disk concentrationanMethInfo.Disk diameteranMethInfo.Experiment TypeanMethInfo.Method sensitivityanMethInfo.Method specificityanMethInfo.Contact timeanMethInfo.Contact temperatureanMethInfo.CommentexprResPerc.Percentage of fatexprResPerc.Percentage of moisture exprResPerc.Percentage of alcoholresRefId.Attachment identifcationresRefId.Lane referenceresInfo.Performed CC for MRSA characterisationresInfo.Performed MLST MRSA characterisationresInfo.Result VectorresInfo.Reference Type by Data ProviderresInfo.Reference Type by CuratorresInfo.CommentevalInfo.Sample analysed assessmentevalInfo.Sample taken assessmentevalInfo.Sampling event evaluationevalInfo.Comment

Element LabelLocal organisation identification codeLocal organisation countryLocal organisation additional informationSampling programme identification codeProgramme legal referenceSampling strategyProgramme type Sampling methodSamplerSampling pointAdditional sampling program informationSampling event identification codeSampling unit typeSampling unit sizeSampling unit size unitOther sampling unit identificationsAdditional sampling event informationSample taken identification codeReporting countryCountry of samplingArea of samplingReporting yearYear of samplingMonth of samplingDay of samplingSample taken sizeSample taken size unitAdditional Sample taken informationType of matrixCoded description of the matrix of the sample takenText description of the matrix of the sample takenCountry of origin of the sample takenArea of origin of the sample takenArea of origin for fisheries or aquaculture activities code of the sample takenArea of origin for fisheries or aquaculture activities text of the sample takenCountry of processing of the sample takenArea of processing of the sample takenAdditional information on the matrix sampledSample analysed identification codeSample analysis reference timeYear of analysisMonth of analysisDay of analysisAdditional information on the sample analysedCoded description of the analysed matrixText description of the matrix analysedAdditional information on the analysed matrix Sample analysed portion sequenceSample analysed portion sizeSample analysed portion size unitAdditional information on the sample analysed portion Isolate identificationCoded description of the isolateText description of the isolateAdditional information on the isolateLaboratory identification codeLaboratory accreditationLaboratory countryAdditional information on the laboratoryType of parameterCoded description of the parameterParameter text Analytical method identificationAnalytical method reference codeAnalytical method typeAnalytical method codeAnalytical method textAdditional information on the analytical methodResult identification codeAccreditation procedure for the analytical methodResult unitResult LODResult LOQResult lower limit of the working rangeResult upper limit of the working rangeCC alphaCC betaResult valueResult value recovery rateResult value corrected for recoveryExpression of result percentageExpression of result typeResult qualitative valueType of result Result value uncertaintyResult value uncertainty Standard deviationResult reference identificationAdditional information on the resultLimit for the result evaluation Limit for the result evaluation (High limit)Type of limit for the result evaluationEvaluation of the resultAction TakenAdditional information on the evaluationlocalOrgInfo.CommentprogInfo.CommentprogInfo.Verification of Salmonella targetprogInfo.Number of flocks/herds under control programprogInfo.Number of animals under control programprogInfo.Total number of samples testedprogInfo.Total number of sampling units testedsampUnitIds.Animal identification codesampUnitIds.Flock/herd identification codesampUnitIds.Batch/ slaughter batch identification codesampUnitIds.Sampling Holding identification codesampUnitIds.Slaughterhouse identification codesampUnitIds.Sampling plant identification codesampEventInfo.CommentsampEventInfo.Status of the holding/ herdsampEventInfo.Vaccination status of the animal or flock/ herdsampEventInfo.Medication status of the animal or flock/ herdsampEventInfo.Country of birthsampEventInfo.Year of slaughteringsampEventInfo.Month of slaughteringsampEventInfo.Day of slaughteringsampEventInfo.Country of slaughteringsampInfo.Arrival YearsampInfo.Arrival MonthsampInfo.Arrival DaysampMatCode.Building hierarchysampMatCode.SourcesampMatCode.Part-naturesampMatCode.Physical-statesampMatCode.IngredientsampMatCode.Surrounding-mediumsampMatCode.Fat-contentsampMatCode.Sweetening-agentsampMatCode.Fortification-agentsampMatCode.Qualitative-infosampMatCode.Alcohol-contentsampMatCode.Dough-MasssampMatCode.Cooking-method[1]sampMatCode.Final-preparation[2]sampMatCode.Preservation-technique[3]sampMatCode.Treatment-modifying- structure-or-nature[4]sampMatCode.Extent-of-cookingsampMatCode.Packaging-formatsampMatCode.Packaging-materialsampMatCode.Part-consumed-analysedsampMatCode.Production-methodsampMatCode.Preparation-production-placesampMatCode.Target-consumersampMatCode.Intended-usesampMatCode.Risky-IngredientsampMatCode.Generic-termsampMatCode.RPC-source-of- derivativessampMatCode.ProcesssampMatCode.Purpose-of-raisingsampMatCode.Reproductive-levelsampMatCode.Animal-age-classsampMatCode.GendersampMatCode.Food-additive- legislative-classsampMatInfo.Brand namesampMatInfo.ManufacturersampMatInfo.CommentsampMatInfo.Year of productionsampMatInfo.Month of productionsampMatInfo.Day of productionsampMatInfo.Year of expirysampMatInfo.Month of expirysampMatInfo.Day of expirysampAnInfo.Completion year of analysissampAnInfo.Completion month of analysissampAnInfo.Completion day of analysissampAnInfo.CommentAnMatCode.Building hierarchyAnMatCode.SourceAnMatCode.Part-natureAnMatCode.Physical-stateAnMatCode.IngredientAnMatCode.Surrounding-mediumAnMatCode.Fat-contentAnMatCode.Sweetening-agentAnMatCode.Fortification-agentAnMatCode.Qualitative-infoAnMatCode.Alcohol-contentAnMatCode.Dough-MassAnMatCode.Cooking-method[5]AnMatCode.Final-preparation[6]AnMatCode.Preservation-technique[7]AnMatCode.Treatment-modifying- structure-or-nature[8]AnMatCode.Extent-of-cookingAnMatCode.Packaging-formatAnMatCode.Packaging-materialAnMatCode.Part-consumed-analysedAnMatCode.Production-methodAnMatCode.Preparation-production-placeAnMatCode.Target-consumerAnMatCode.Intended-useAnMatCode.Risky-IngredientAnMatCode.Generic-termAnMatCode.RPC-source-of- derivativesAnMatCode.ProcessAnMatCode.Purpose-of-raisingAnMatCode.Reproductive-levelAnMatCode.Animal-age-classAnMatCode.GenderAnMatCode.Food–additive- legislative-classanMatInfo.Additional information on the matrix analysedanPortInfo.Additional information on the sample analysed portionisolParamCode .IsolateisolInfo.Isolation yearisolInfo.Isolation monthIsolInfo.Isolation dayisolInfo.Additional information on the isolatelabInfo.Total number of isolates available in the laboratory labInfo.CommentparamCode.base parameterparamCode.ESBL phenotypeparamCode.AMPC phenotypeparamCode.Carbapenemase phenotypeparamCode.Synergy testanMethCode.Analytical method codeanMethCode.Sample introductionanMethInfo.Disk concentrationanMethInfo.Disk diameteranMethInfo.Experiment TypeanMethInfo.Method sensitivityanMethInfo.Method specificityanMethInfo.Contact timeanMethInfo.Contact temperatureanMethInfo.CommentexprResPerc.Percentage of fatexprResPerc.Percentage of moisture exprResPerc.Percentage of alcoholresRefId.Attachment identifcationresRefId.Lane referenceresInfo.Performed CC for MRSA characterisationresInfo.Performed MLST MRSA characterisationresInfo.Result VectorresInfo.Reference Type by Data ProviderresInfo.Reference Type by CuratorresInfo.CommentevalInfo.Sample analysed assessmentevalInfo.Sample taken assessmentevalInfo.Sampling event evaluationevalInfo.Comment

Element LabelProgramme legal referenceSampling strategyProgramme type Sampling methodSample taken identification codeCountry of samplingYear of samplingType of matrixCoded description of the matrix of the sample takenText description of the matrix of the sample takenCountry of origin of the sample takenYear of analysisLaboratory identification codeLaboratory accreditationType of parameterCoded description of the parameterParameter text Analytical method typeAnalytical method codeResult identification codeAccreditation procedure for the analytical methodResult unitResult LOQResult valueResult value recovery rateResult value corrected for recoveryType of result Result value uncertainty Standard deviationLimit for the result evaluation Type of limit for the result evaluationEvaluation of the resultAction TakensampMatCode.Production-methodexprResPerc.Percentage of fatevalInfo.Comment

76 elements total

≈35 relevant elements

204 elements total

≈35 relevant elements



Some challenges using SSD1 for pesticide monitoring results (1)

• Product Treatment / MRL applicabillity– Are EU-MRL applicable for processed food?– No element for this specific information is present in SSD1.– Pesticide domain:

Use Product Treatment (prodTreat):Unprocessed => EU-MRL is applicableProcessed => EU-MRL is not applicable

This may conflict with other data domains when e.g. dry beans or black tea must be reported as ‘Unprocessed’ in the pesticide domain to reflect MRL legislation.



Some challenges using SSD1 for pesticide monitoring results (2)• Program Type / EU coordinated program

– Are sample part of the EU coordinated program ?– No element for this specific information is present in SSD1.– Pesticide domain:

Use Program Type (progType):‘Official (EU) programme’ => YES

‘Official (EU or National) programme’ => YES‘Official (National) programme’ => NO

This may conflict with other data domains when e.g. samples from Directive 96/23 must be reported (draft 2014 Guideline) as ‘Official (National) programme’ in the pesticide domain.



Moving from SSD1 to SSD2

• New names to elements, new ordering of elements–You can keep your present structure, just changing names

and ordering when XML-file is written• New type of element: Compound elements

–You can keep fields separate in your database, just creating the compound text when the XML-file is written

• New catalogue structure:–FoodEx2 catalogue–Parameter catalogue–Method catalogue

!!!(changes in structure can be ignored)

(changes in structure can be ignored)



Moving from SSD1 to SSD2SSD1 SSD2

Element Label Element LabelLaboratory sample code Programme legal referenceLanguage Sampling strategyCountry of sampling Programme type Country of origin of the product Sampling methodProduct code Sample taken identification codeProduct full text description Country of samplingMethod of production Year of samplingProduct treatment Type of matrixProduct comment Coded description of the matrix of the sample takenYear of sampling sampMatCode.Production-methodProgramme legal reference Text description of the matrix of the sample takenSampling strategy Country of origin of the sample takenType of sampling program Additional information on the matrix sampledSampling method Year of analysisLaboratory Laboratory identification codeLaboratory accreditation Laboratory accreditationYear of analysis Type of parameterResult code Coded description of the parameterParameter code Parameter text Parameter text Analytical method typeType of parameter Analytical method codeAnalytical method code Result identification codeAccreditation procedure for the analytical method Accreditation procedure for the analytical methodResult unit Result unitResult LOQ Result LOQResult value Result valueResult value uncertainty Standard deviation Type of result Percentage of fat in the original sample Result value uncertainty Standard deviationExpression of result exprResPerc.Percentage of fatType of result Expression of result typeLegal Limit for the result Limit for the result evaluation Type of legal limit Type of limit for the result evaluationEvaluation of the result Evaluation of the resultAction Taken Action TakenComment of the result evalInfo.Comment

! !

!

!

!

Type of matrix (sampMatType/MTXTYP):

FoodFeed

Analytical method type (anMethType/ ANLYTYP):

QuantitativeScreening

Coded description of the matrix of the sample taken (sampMatCode /FoodEx2)

Product Code (prodCom/MATRIX)

Product Treatment (prodTreat/PRODTR)



Some challenges using SSD2 for pesticide monitoring results (1)• New food description catalogue: FoodEx2

Base code• A0DZB for ‘Oranges’• A03AM for ‘Juice, orange’

+Facets• A0DZB#F21.A07SE for ‘Oranges (organic production)’• A03AM#F21.A07SE$F28.A07KQ

for ‘Juice, orange (organic production, frozen)’

http://www.efsa.europa.eu/en/datex/datexfoodclass.htm

Francesco Vernazza <[email protected]>



Some challenges using SSD2 for pesticide monitoring results (2)

• prodCode/MATRIX catalogue is missing from SSD2• prodTreat/PRODTR catalogue is missing from SSD2

• FoodEx2 codes not directly linked to legislation• No simple relation between FoodEx2 code and MRL

applicability



prodCode/MATRIX catalogue

P0110020A

matrixCode code nameP0110020 A01CP Oranges and similar-P0110020 A01CR Oranges, sweetP0110020-003 A01CS Blood orangesP0110020-002 A01CT Bitter orangesP0110020 A01NF Jam, orangesP0110020 A01NK Marmalade, orangesP0110020-006 A0DYZ Trifoliate orangesP0110020-000 A0DZB Oranges



prodTreat/PRODTR catalogue

prodTreat in the pesticide data domain is used as:

EU-MRL is applicable or not

No simple relation between FoodEx2 code and MRL applicability



prodTreat/PRODTR catalogueSuggested solution in SSD2

Create a new element: Is EU-MRL applicable ? (YES or NO)

in a compound element

In addition, create a new element:Processing factor (decimal)

in the same compound element

Compound element: sampMatInfo or resInfo



prodTreat/PRODTR catalogueSuggested solution in SSD2

Element name Attribute name Attribute labelsampMatInfo brandName Brand namesampMatInfo manuf ManufacturersampMatInfo Com CommentsampMatInfo prodY Year of productionsampMatInfo prodM Month of productionsampMatInfo prodD Day of productionsampMatInfo expiryY Year of expirysampMatInfo expiryM Month of expirysampMatInfo expiryD Day of expirysampMatInfo MRLapplic Is EU MRL applicable ?sampMatInfo procFactor Processing factor

<sampMatInfo>MRLapplic=NO$procFactor=3.4$Com=PF based on loss of water during drying</sampMatInfo>



Transformation of data from DK LIMS to EFSA via DTU Food

DVFA

• Extract from datawarehouse at Danish Vet. and Food Administration

DTU

• Extract received in DTU data base• Recoded by local translation tables• Supplemented with missing data• Write data set as an XML file

EFSA

• XML received in DCF (Data Collection Framework)



Implementation of FoodEx2 in DK (1)

• DK LIMS categorise products by:–Base element (e.g. ‘Orange juice’)–Three facets for

• Heat treatment (e.g. frozen)• Physical condition (e.g. powder)• Other treatment (e.g. concentrate)

• FoodEx2 code:–Base code: A03CA (Juice concentrate, orange) –Facet: F28.A07KQ (TECHNO=Freezing)

• XML:<sampMatCode>A03CA# F28.A07KQ</sampMatCode>



Product Treat_1 Treat_2 Treat_3 Produkt_ID FoodEx2_Code FoodEx2_Name prodTreat MRLapplic prodCodeOrange F-05977 A01CP Oranges and similar- T999A YES P0110020AOrangejuice F-05978 A03AM Juice, orange T103A NO P0110020A

Orangejuice Concentrate F-05980 A03CAJuice concentrate, orange

T103A NO P0110020A

Orangejuice Frozen Concentrate F-05980 A03CA#F28.A07KQJuice concentrate, orange, PROCESS=Freezing

T103A NO P0110020A

Special regulation PRODMD_Code FoodEx_PROD_CodeOrganic production PD07A F21.A07SE

Implementation of FoodEx2 in DK (2)

DK LIMS product tableDTU EFSA product table

DK LIMS sample tableDTU EFSA production table

Frozen orange juice concentrate, organic production:

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EFSA Data Collection using SSD2 for pesticide monitoring results Jens Hinge Andersen...

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