Discovery, Biosynthesis and Bioengineering of Novel ...
Transcript of Discovery, Biosynthesis and Bioengineering of Novel ...
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Discovery, Biosynthesis and Bioengineering of Novel Antibiotics
from Bacteria
Dr. Matthew Jenner
RSC Toxicology Group: Tackling Antimicrobial Resistance
September 17th 2018
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Traditional Approach for Bioactive Natural Product Discovery‘Grind and Find’ Methodology
Extraction
Extract
Bioactivity?
Metabolite
Separation &
Purification
Identify Bioactive Fraction → ANTIBIOTIC!
Selman Waksman
Alexander
Fleming
Howard
Florey
Ernst
Chain
Dorothy
Hodgkin
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Streptomyces coelicolor – A Prolific Producer of Specialised Metabolites‘Grind and Find’ Methodology
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Streptomyces coelicolor – A Prolific Producer of Specialised Metabolites‘Grind and Find’ Methodology
Nature 2002, 417, 141
Microbiology 2003, 149, 505
Mol. Microbiol. 2004, 51, 1615
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Streptomyces coelicolor – A Prolific Producer of Specialised Metabolites‘Grind and Find’ Methodology
0 1 2 3 4 5 6 7 8 8.7 Mb
Chromosome
0 100 200 300 356 Kb
SCP1
act
whiE
redcda
scb
mmy
SCP2 31 Kb
Nature 2002, 417, 141
Microbiology 2003, 149, 505
Mol. Microbiol. 2004, 51, 1615
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Streptomyces coelicolor – A Prolific Producer of Specialised Metabolites‘Grind and Find’ Methodology
0 1 2 3 4 5 6 7 8 8.7 Mb
Chromosome
0 100 200 300 356 Kb
SCP1
act
whiE
redcda
scb
polyketide synthase (PKS)terpene synthase
nonribosomal peptide synthetase (NRPS)
NRPS-independent siderophore synthetase
hybrid NRPS / PKS / a-oxamine synthase
hybrid PKS / butenolide synthase
mmy
SCP2 31 Kb
Nature 2002, 417, 141
Microbiology 2003, 149, 505
Mol. Microbiol. 2004, 51, 1615
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Streptomyces coelicolor – A Full Metabolic ProfileApplication of Genomics-Based Discovery
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Natural Products from BurkholderiaDiverse Metabolic Arsenal
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Exploiting Burkholderia for Novel Antimicrobial Compounds‘An untapped source of novel bioactive metabolites’
Acinetobacter baumannii (MIC 2 µg/mL)
Chem. Biol. 2011, 18, 665.
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Exploiting Burkholderia for Novel Antimicrobial Compounds‘An untapped source of novel bioactive metabolites’
Chem. Biol. 2011, 18, 665.
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Exploiting Burkholderia for Novel Antimicrobial Compounds‘An untapped source of novel bioactive metabolites’
Enacyloxin Biosynthetic Gene Cluster
Chem. Biol. 2011, 18, 665.
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Biosynthesis of Enacyloxin IIaHybrid cis/trans-AT Modular Polyketide Synthase
Chem. Biol. 2011, 18, 665.
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Screening Metabolites from Burkholderia gladioli BCC0238A Highly Bioactive Strain
J. Am. Chem. Soc. 2017, 139, 7974.
MRSA B. multivorans B. subtilis R. mannitolilytica E. faecium C. albicans
Cystic fibrosis patient
Minneapolis, USA.
1996
Burkholderia gladioli
BCC0238
Metabolite Screening
B. gladioli BCC0238 overlays
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Burkholderia gladioli
BCC0238
Genome Sequencing of Burkholderia gladioli BCC0238Biosynthetic Gene Cluster Analysis
J. Am. Chem. Soc. 2017, 139, 7974.
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EtnangienSorangium cellulosum
Mycobacterium smegmatis (MIC 1 μg/mL)
Inhibits E. coli RNA Polymerase
Discovery of Gladiolin: A Novel Macrolide AntibioticStructure Elucidation and Comparison to Etnangien
J. Am. Chem. Soc. 2017, 139, 7974.
Highly unstable!
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675.4662693.4767
711.4873
725.5032
743.5139
761.5245
779.5349
801.5170
BCC0238_WT_Glycerol_RE2_01_2087.d: +MS, 19.6-19.8min #2351-2370
0.0
0.5
1.0
1.5
6x10
Intens.
650 675 700 725 750 775 800 825 850 875 m/z
761.5245
743.5139
761.5245
779.5349
801.5170
[M+H]+
[M+Na]+
Molecular Formula: C44H75O11-H2O
-H2O
-H2O
MRSA B. multivorans B. subtilis R. mannitolilytica E. faecium C. albicans
Screening Metabolites from Burkholderia gladioli BCC0238LC-MS Metabolite Screens of Crude Extracts
J. Am. Chem. Soc. 2017, 139, 7974.
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EIC: 801.51±0.02
EIC: 801.51±0.02
B. gladioli BCC0238
B. gladioli BCC0238
:: gbnD1
Genome Sequencing of Burkholderia gladioli BCC0238Insertional Mutation Abolishes Gladiolin Production
J. Am. Chem. Soc. 2017, 139, 7974.
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Gladiolin
Burkholderia gladioli
Etnangien
Sorangium cellulosum
Mycobacterium smegmatis (MIC 1 μg/mL)
Inhibits E. coli RNA Polymerase
Discovery of Gladiolin: A Novel Macrolide AntibioticStructure Elucidation and Comparison to Etnangien
J. Am. Chem. Soc. 2017, 139, 7974.
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Gladiolin
Burkholderia gladioli
Mycobacterium tuberculosis (MIC 0.3 μg/mL)
Inhibits Mycobacterium smegmatis RNA Polymerase (23 μM)
Etnangien
Sorangium cellulosum
Mycobacterium smegmatis (MIC 1 μg/mL)
Inhibits E. coli RNA Polymerase
(-) Gladiolin
(+) Gladiolin
Discovery of Gladiolin: A Novel Macrolide AntibioticGladiolin Inhibition of RNA Polymerase and Cytotoxicity
J. Am. Chem. Soc. 2017, 139, 7974.
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Gladiolin
Target: M. tuberculosis RNA Polymerase
Discovery of Gladiolin: A Novel Macrolide AntibioticCross-Resistance with Rifampicin and Isoniazid
MIC (μg/mL)
Strain Mutation Resistance Gladiolin Isoniazid Rifampicin
H37Rv None None 0.3 0.04 0.001
HUG.MB.6726 inhA Isoniazid 0.3 2.2 0.001
CHUV80037024 inhA/katG/rpoB Isoniazid/Rifampicin 1.7 >10 >10
Isoniazid
Target: M. tuberculosis Enoyl-ACP Reductase (InhA)
&
M. tuberculosis Catalase peroxidase (KatG)
Rifampicin
Target: M. tuberculosis RNA Polymerase β-subunit (RpoB)
J. Am. Chem. Soc. 2017, 139, 7974.
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Discovery of Gladiolin: A Novel Macrolide AntibioticA Bit of Press Attention…
J. Am. Chem. Soc. 2017, 139, 7974.
Nat. Prod. Rep. 2017, 37, 713.
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Prof. Greg Challis
Jozef Lewandowski, PhD
Lona Alkhalaf, PhD
Dani Zabala, PhD
Doug Roberts, PhD
Simone Kosol, PhD
Miriam Rodriguez, PhD
Joleen Masschelein, PhD
Yousef Dashti, PhD
Chuan Huang, PhD
Emzo de los Santos, PhD
Angelo Gallo, PhD
Chang-An Geng, PhD
Daniel Griffiths, PhD
Shanshan Zhou, PhD
Chris Fage, PhD
Hussain Bhukya, PhD
Ruby Awodi
Rebin Salih
Jade Ronan (nee Foster)
Gideon Idowu
Josh Cartwright
Richard Gibson
Rakesh Saroay
Maz Costa
Chris Perry
Xinyun Jian
Christian Hobson
Matt Beech
Alma Svatos
Patrick Capel
Acknowledgements
Prof. Esh Mahenthiralingam
Cerith Jones, PhD
Prof. Julian Parkhill
Simon Harris, PhD
Prof. Stewart Cole
Ruben Hartkoorn, PhD
Anthony Vocat, PhD