Data$Mining$MTAT.03.183$ Descripveanalysis,preprocessing ... · October 19, 2011 Data Mining:...

102
Data Mining MTAT.03.183 Descrip5ve analysis, preprocessing, visualisa5on... Jaak Vilo 2011 Fall

Transcript of Data$Mining$MTAT.03.183$ Descripveanalysis,preprocessing ... · October 19, 2011 Data Mining:...

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Data  Mining  MTAT.03.183  

Descrip5ve  analysis,  preprocessing,  visualisa5on...  

Jaak  Vilo  2011  Fall  

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October 19, 2011 Data Mining: Concepts and Techniques 2

Why Data Preprocessing?

n  Data in the real world is dirty n  incomplete: lacking attribute values, lacking

certain attributes of interest, or containing only aggregate data

n  e.g., occupation=“ ”

n  noisy: containing errors or outliers n  e.g., Salary=“-10”

n  inconsistent: containing discrepancies in codes or names

n  e.g., Age=“42” Birthday=“03/07/1997” n  e.g., Was rating “1,2,3”, now rating “A, B, C” n  e.g., discrepancy between duplicate records

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October 19, 2011 Data Mining: Concepts and Techniques 3

Why Is Data Dirty?

n  Incomplete data may come from n  “Not applicable” data value when collected n  Different considerations between the time when the data was

collected and when it is analyzed. n  Human/hardware/software problems

n  Noisy data (incorrect values) may come from n  Faulty data collection instruments n  Human or computer error at data entry n  Errors in data transmission

n  Inconsistent data may come from n  Different data sources n  Functional dependency violation (e.g., modify some linked data)

n  Duplicate records also need data cleaning

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October 19, 2011 Data Mining: Concepts and Techniques 4

Why Is Data Preprocessing Important?

n  No quality data, no quality mining results!

n  Quality decisions must be based on quality data n  e.g., duplicate or missing data may cause incorrect or even

misleading statistics.

n  Data warehouse needs consistent integration of quality data

n  Data extraction, cleaning, and transformation comprises the majority of the work of building a data warehouse

n Garbage in, garbage out

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October 20, 2011 Data Mining: Concepts and Techniques 5

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October 19, 2011 Data Mining: Concepts and Techniques 6

Multi-Dimensional Measure of Data Quality

n  A well-accepted multidimensional view: n  Accuracy n  Completeness n  Consistency n  Timeliness n  Believability n  Value added n  Interpretability n  Accessibility

n  Broad categories: n  Intrinsic, contextual, representational, and accessibility

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October 19, 2011 Data Mining: Concepts and Techniques 7

Major Tasks in Data Preprocessing

n  Data cleaning n  Fill in missing values, smooth noisy data, identify or remove

outliers, and resolve inconsistencies

n  Data integration n  Integration of multiple databases, data cubes, or files

n  Data transformation n  Normalization and aggregation

n  Data reduction n  Obtains reduced representation in volume but produces the same

or similar analytical results

n  Data discretization n  Part of data reduction but with particular importance, especially

for numerical data

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October 19, 2011 Data Mining: Concepts and Techniques 8

Forms of Data Preprocessing

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October 19, 2011 Data Mining: Concepts and Techniques 9

Chapter 2: Data Preprocessing

n  Why preprocess the data?

n  Descriptive data summarization

n  Data cleaning

n  Data integration and transformation

n  Data reduction

n  Discretization and concept hierarchy generation

n  Summary

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•  1.51  9.36  5.93  2.09  4.67  7.38  8.83  2.35  4.90  4.00  7.25  6.93  8.22  2.15  4.04  5.00  6.15  5.39  0.09  6.39  3.78  1.37  4.44  8.45  8.97  2.39  6.08  4.04  3.39  0.87  9.61  5.33  6.46  4.08  8.16  6.41  7.64  5.41  6.95  8.30  0.61  9.48  9.87  1.05  5.50  4.18  9.86  1.45  1.48  5.95  0.85  9.16  3.10  3.45  5.58  0.99  7.52  1.26  8.64  0.39  9.32  7.17  8.96  9.27  1.53  6.08  8.97  0.03  8.75  8.85  0.58  8.33  8.90  6.71  9.53  1.37  5.01  0.58  0.45  2.26  7.44  9.90  4.57  8.24  0.02  7.37  1.00  9.48  0.50  4.50  0.21  5.62  7.07  7.81  5.33  9.14  7.68  6.95  2.85  8.39  

October 19, 2011 Data Mining: Concepts and Techniques 10

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Characterise  data  

use  Big_University_DB  mine  characteris5cs  as  "Science_Students"  in  relevance  to  name,gender,major,birth_date,residence,phone#,gpa  from  student  where  status  in  graduate  

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October 19, 2011 Data Mining: Concepts and Techniques 12

Mining Data Descriptive Characteristics

n  Motivation

n  To better understand the data: central tendency, variation and spread

n  Data dispersion characteristics

n  median, max, min, quantiles, outliers, variance, etc.

n  Numerical dimensions correspond to sorted intervals

n  Data dispersion: analyzed with multiple granularities of precision

n  Boxplot or quantile analysis on sorted intervals

n  Dispersion analysis on computed measures

n  Folding measures into numerical dimensions

n  Boxplot or quantile analysis on the transformed cube

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October 19, 2011 Data Mining: Concepts and Techniques 13

Measuring the Central Tendency

n  Mean (algebraic measure) (sample vs. population):

n  Weighted arithmetic mean:

n  Trimmed mean: chopping extreme values

n  Median: A holistic measure

n  Middle value if odd number of values, or average of the middle two

values otherwise

n  Estimated by interpolation (for grouped data):

n  Mode

n  Value that occurs most frequently in the data

n  Unimodal, bimodal, trimodal

n  Empirical formula:

∑=

=n

iixn

x1

1

=

== n

ii

n

iii

w

xwx

1

1

cf

lfnLmedian

median

))(2/

(1∑−

+=

)(3 medianmeanmodemean −×=−

Nx∑=µ

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•  Histograms  and  Probability  Density  FuncSons  •  Probability  Density  FuncSons  

–  Total  area  under  curve  integrates  to  1  

•  Frequency  Histograms  –  Y-­‐axis  is  counts  –  Simple  interpretaSon  –  Can't  be  directly  related  to  probabiliSes  or  density  funcSons  

•  RelaSve  Frequency  Histograms  –  Divide  counts  by  total  number  of  observaSons  –  Y-­‐axis  is  relaSve  frequency  –  Can  be  interpreted  as  probabiliSes  for  each  range  –  Can't  be  directly  related  to  density  funcSon  

•  Bar  heights  sum  to  1  but  won't  integrate  to  1  unless  bar  width  =  1  

•  Density  Histograms  –  Divide  counts  by  (total  number  of  observaSons  X  bar  width)  –  Y-­‐axis  is  density  values  –  Bar  height  X  bar  width  gives  probability  for  each  range  –  Can  be  directly  related  to  density  funcSon  

•  Bar  areas  sum  to  1  

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http://www.geog.ucsb.edu/~joel/g210_w07/lecture_notes/lect04/oh07_04_1.html

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histograms  

•  equal  sub-­‐intervals,  known  as  `bins‘  

•  break  points  

•  bin  width  

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The data are (the log of) wing spans of aircraft built in from 1956 - 1984.

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Histogram  vs  kernel  density  

•  properSes  of  histograms  with  these  two  examples:    –  they  are  not  smooth    –  depend  on  end  points  of  bins    –  depend  on  width  of  bins    

•  We  can  alleviate  the  first  two  problems  by  using  kernel  density  es5mators.    

•  To  remove  the  dependence  on  the  end  points  of  the  bins,  we  centre  each  of  the  blocks  at  each  data  point  rather  than  fixing  the  end  points  of  the  blocks.    

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block of width 1 and height 1/12 (the dotted boxes) as they are 12 data points, and then add them up

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•  Blocks  -­‐  it  is  sSll  disconSnuous  as  we  have  used  a  disconSnuous  kernel  as  our  building  block  

•  If  we  use  a  smooth  kernel  for  our  building  block,  then  we  will  have  a  smooth  density  esSmate.    

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•  It's  important  to  choose  the  most  appropriate  bandwidth  as  a  value  that  is  too  small  or  too  large  is  not  useful.    

•  If  we  use  a  normal  (Gaussian)  kernel  with  bandwidth  or  standard  deviaSon  of  0.1  (which  has  area  1/12  under  the  each  curve)  then  the  kernel  density  esSmate  is  said  to  undersmoothed  as  the  bandwidth  is  too  small  in  the  figure  below.    

•  It  appears  that  there  are  4  modes  in  this  density  -­‐  some  of  these  are  surely  arSfices  of  the  data.    

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•  Choose  opSmal  bandwith  – Need  to  esSmate  it  

•  AMISE  =  AsymptoSc  Mean  Integrated  Squared  Error  •  opSmal  bandwidth  =  arg  min  AMISE  

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•  The  opSmal  value  of  the  bandwidth  for  our  dataset  is  about  0.25.    

•  From  the  opSmally  smoothed  kernel  density  esSmate,  there  are  two  modes.  As  these  are  the  log  of  aircraj  wing  span,  it  means  that  there  were  a  group  of  smaller,  lighter  planes  built,  and  these  are  clustered  around  2.5  (which  is  about  12  m).    

•  Whereas  the  larger  planes,  maybe  using  jet  engines  as  these  used  on  a  commercial  scale  from  about  the  1960s,  are  grouped  around  3.5  (about  33  m).    

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•  The  properSes  of  kernel  density  esSmators  are,  as  compared  to  histograms:    – smooth    – no  end  points    – depend  on  bandwidth    

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Kernel  Density  esSmaSon  

•  Gentle  introducSon  –  hlp://school.maths.uwa.edu.au/~duongt/seminars/intro2kde/    

•  Tutorial    –  hlp://parallel.vub.ac.be/research/causalModels/tutorial/kde.html    

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R  –  example  (due  K.  Tretjakov)  d  =  c(1,2,2,2,2,1,2,2,2,3,2,3,4,5,4,3,2,3,4,4,5,6,7);    kernelsmooth  <-­‐  funcSon(data,  sigma,  x)  {    result  =  0;    for  (d  in  data)  {      result  =  result  +  exp(-­‐(x-­‐d)^2/2/sigma^2);    }    result/sqrt(2*pi)/sigma;  }    x  =  seq(min(d),  max(d),  by=0.1);  y  =  sapply(x,  funcSon(x)  {  kernelsmooth(d,  1,  x)  });  hist(d);  lines(x,y);  

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hlp://parallel.vub.ac.be/research/causalModels/tutorial/kde.html    

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hlp://jmlr.csail.mit.edu/proceedings/papers/v2/kontkanen07a/kontkanen07a.pdf    

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•  R  tutorial  – hlp://cran.r-­‐project.org/doc/manuals/R-­‐intro.html    

– hlp://www.google.com/search?q=R+tutorial    

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More  links  on  R  and  kernel  density    •  hlp://en.wikipedia.org/wiki/Kernel_density_esSmaSon    

•  hlp://sekhon.berkeley.edu/stats/html/density.html    

•  hlp://stat.ethz.ch/R-­‐manual/R-­‐patched/library/stats/html/density.html    

•  hlp://www.google.com/search?q=kernel+density+esSmaSon+R  

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October 19, 2011 Data Mining: Concepts and Techniques 46

Symmetric vs. Skewed Data

n  Median, mean and mode of symmetric, positively and negatively skewed data

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October 19, 2011 Data Mining: Concepts and Techniques 47

Measuring the Dispersion of Data

n  Quartiles, outliers and boxplots

n  Quartiles: Q1 (25th percentile), Q3 (75th percentile)

n  Inter-quartile range: IQR = Q3 – Q1

n  Five number summary: min, Q1, M, Q3, max n  Boxplot: ends of the box are the quartiles, median is marked, whiskers, and

plot outlier individually

n  Outlier: usually, a value higher/lower than 1.5 x IQR

n  Variance and standard deviation (sample: s, population: σ)

n  Variance: (algebraic, scalable computation)

n  Standard deviation s (or σ) is the square root of variance s2 (or σ2)

∑ ∑∑= ==

−−

=−−

=n

i

n

iii

n

ii x

nx

nxx

ns

1 1

22

1

22 ])(1[11)(

11

∑∑==

−=−=n

ii

n

ii x

Nx

N 1

22

1

22 1)(1µµσ

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October 19, 2011 Data Mining: Concepts and Techniques 48

Properties of Normal Distribution Curve

n  The normal (distribution) curve n  From μ–σ to μ+σ: contains about 68% of the

measurements (μ: mean, σ: standard deviation) n  From μ–2σ to μ+2σ: contains about 95% of it n  From μ–3σ to μ+3σ: contains about 99.7% of it

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October 19, 2011 Data Mining: Concepts and Techniques 49

Boxplot Analysis

n  Five-number summary of a distribution:

Minimum, Q1, M, Q3, Maximum

n  Boxplot

n  Data is represented with a box

n  The ends of the box are at the first and third quartiles, i.e., the height of the box is IRQ

n  The median is marked by a line within the box

n  Whiskers: two lines outside the box extend to Minimum and Maximum

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Box  Plots  

•  Tukey77:  John  W.  Tukey,  "Exploratory  Data  Analysis".  Addison-­‐Wesley,  Reading,  MA.  1977.    

•  hlp://informaSonandvisualizaSon.de/blog/box-­‐plot  

•     

Jaak  Vilo  and  other  authors   UT:  Data  Mining  2009   50  

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October 19, 2011 Data Mining: Concepts and Techniques 53

Visualization of Data Dispersion: Boxplot Analysis

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October 19, 2011 Data Mining: Concepts and Techniques 54

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October 19, 2011 Data Mining: Concepts and Techniques 55

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October 19, 2011 Data Mining: Concepts and Techniques 56

Quantile Plot

n  Displays all of the data (allowing the user to assess both the overall behavior and unusual occurrences)

n  Plots quantile information n  For a data xi data sorted in increasing order, fi

indicates that approximately 100 fi% of the data are below or equal to the value xi

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October 20, 2011 Data Mining: Concepts and Techniques 57

Quantile-Quantile (Q-Q) Plot n  Graphs the quantiles of one univariate distribution against

the corresponding quantiles of another n  Allows the user to view whether there is a shift in going

from one distribution to another http://en.wikipedia.org/wiki/Q-Q_plot

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Kemmeren et.al. (Mol. Cell, 2002)

Randomized expression data

Yeast 2-hybrid studies

Known (literature) PPI

MPK1 YLR350w SNF4 YCL046W"

SNF7 YGR122W.

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October 19, 2011 Data Mining: Concepts and Techniques 59

Scatter plot

n  Provides a first look at bivariate data to see clusters of points, outliers, etc

n  Each pair of values is treated as a pair of coordinates and plotted as points in the plane

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October 19, 2011 Data Mining: Concepts and Techniques 60

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October 19, 2011 Data Mining: Concepts and Techniques 61

Not Correlated Data

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Numerical summary?

October 20, 2011 Data Mining: Concepts and Techniques 62

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Anscombe’s quartet

October 20, 2011 Data Mining: Concepts and Techniques 63

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October 20, 2011 Data Mining: Concepts and Techniques 64

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October 19, 2011 Data Mining: Concepts and Techniques 65

Loess Curve

n  Adds a smooth curve to a scatter plot in order to provide better perception of the pattern of dependence

n  Loess curve is fitted by setting two parameters: a smoothing parameter, and the degree of the polynomials that are fitted by the regression

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October 19, 2011 Data Mining: Concepts and Techniques 66

Graphic Displays of Basic Statistical Descriptions

n  Histogram: (shown before) n  Boxplot: (covered before) n  Quantile plot: each value xi is paired with fi indicating

that approximately 100 fi % of data are ≤ xi n  Quantile-quantile (q-q) plot: graphs the quantiles of one

univariant distribution against the corresponding quantiles of another

n  Scatter plot: each pair of values is a pair of coordinates and plotted as points in the plane

n  Loess (local regression) curve: add a smooth curve to a scatter plot to provide better perception of the pattern of dependence

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October 19, 2011 Data Mining: Concepts and Techniques 67

Chapter 2: Data Preprocessing

n  Why preprocess the data?

n  Descriptive data summarization

n  Data cleaning

n  Data integration and transformation

n  Data reduction

n  Discretization and concept hierarchy generation

n  Summary

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October 19, 2011 Data Mining: Concepts and Techniques 68

Data Cleaning

n  Importance n  “Data cleaning is one of the three biggest problems

in data warehousing”—Ralph Kimball n  “Data cleaning is the number one problem in data

warehousing”—DCI survey

n  Data cleaning tasks

n  Fill in missing values

n  Identify outliers and smooth out noisy data

n  Correct inconsistent data

n  Resolve redundancy caused by data integration

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October 19, 2011 Data Mining: Concepts and Techniques 69

Missing Data

n  Data is not always available

n  E.g., many tuples have no recorded value for several attributes, such as customer income in sales data

n  Missing data may be due to

n  equipment malfunction

n  inconsistent with other recorded data and thus deleted

n  data not entered due to misunderstanding

n  certain data may not be considered important at the time of entry

n  not register history or changes of the data

n  Missing data may need to be inferred.

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October 19, 2011 Data Mining: Concepts and Techniques 70

How to Handle Missing Data?

n  Ignore the tuple: usually done when class label is missing (assuming

the tasks in classification—not effective when the percentage of

missing values per attribute varies considerably.

n  Fill in the missing value manually: tedious + infeasible?

n  Fill in it automatically with

n  a global constant : e.g., “unknown”, a new class?!

n  the attribute mean

n  the attribute mean for all samples belonging to the same class:

smarter

n  the most probable value: inference-based such

as Bayesian formula or decision tree

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K-NN impute

n  K nearest neighbours imputation

n  Find K neighbours on available data points

n  Estimate the missing value

n  (Hastie, Tibshirani, Troyanskaya, … Stanford 1999-2001)

October 20, 2011 Data Mining: Concepts and Techniques 71

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October 20, 2011 Data Mining: Concepts and Techniques 72

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October 19, 2011 Data Mining: Concepts and Techniques 73

Noisy Data

n  Noise: random error or variance in a measured variable n  Incorrect attribute values may due to

n  faulty data collection instruments n  data entry problems n  data transmission problems n  technology limitation n  inconsistency in naming convention

n  Other data problems which requires data cleaning n  duplicate records n  incomplete data n  inconsistent data

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October 19, 2011 Data Mining: Concepts and Techniques 74

How to Handle Noisy Data?

n  Binning n  first sort data and partition into (equal-frequency) bins n  then one can smooth by bin means, smooth by bin

median, smooth by bin boundaries, etc. n  Regression

n  smooth by fitting the data into regression functions n  Clustering

n  detect and remove outliers n  Combined computer and human inspection

n  detect suspicious values and check by human (e.g., deal with possible outliers)

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October 19, 2011 Data Mining: Concepts and Techniques 75

Simple Discretization Methods: Binning

n  Equal-width (distance) partitioning

n  Divides the range into N intervals of equal size: uniform grid

n  if A and B are the lowest and highest values of the attribute, the

width of intervals will be: W = (B –A)/N.

n  The most straightforward, but outliers may dominate presentation

n  Skewed data is not handled well

n  Equal-depth (frequency) partitioning

n  Divides the range into N intervals, each containing approximately

same number of samples

n  Good data scaling

n  Managing categorical attributes can be tricky

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October 19, 2011 Data Mining: Concepts and Techniques 76

Binning Methods for Data Smoothing

q  Sorted data for price (in dollars): 4, 8, 9, 15, 21, 21, 24, 25, 26, 28, 29, 34

* Partition into equal-frequency (equi-depth) bins: - Bin 1: 4, 8, 9, 15 - Bin 2: 21, 21, 24, 25 - Bin 3: 26, 28, 29, 34 * Smoothing by bin means: - Bin 1: 9, 9, 9, 9 - Bin 2: 23, 23, 23, 23 - Bin 3: 29, 29, 29, 29 * Smoothing by bin boundaries: - Bin 1: 4, 4, 4, 15 - Bin 2: 21, 21, 25, 25 - Bin 3: 26, 26, 26, 34

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October 19, 2011 Data Mining: Concepts and Techniques 77

Regression

x

y

y = x + 1

X1

Y1

Y1’

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October 19, 2011 Data Mining: Concepts and Techniques 78

Cluster Analysis

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October 19, 2011 Data Mining: Concepts and Techniques 79

Data Cleaning as a Process

n  Data discrepancy detection n  Use metadata (e.g., domain, range, dependency, distribution) n  Check field overloading n  Check uniqueness rule, consecutive rule and null rule n  Use commercial tools

n  Data scrubbing: use simple domain knowledge (e.g., postal code, spell-check) to detect errors and make corrections

n  Data auditing: by analyzing data to discover rules and relationship to detect violators (e.g., correlation and clustering to find outliers)

n  Data migration and integration n  Data migration tools: allow transformations to be specified n  ETL (Extraction/Transformation/Loading) tools: allow users to

specify transformations through a graphical user interface n  Integration of the two processes

n  Iterative and interactive (e.g., Potter’s Wheels)

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October 19, 2011 Data Mining: Concepts and Techniques 80

Chapter 2: Data Preprocessing

n  Why preprocess the data?

n  Data cleaning

n  Data integration and transformation

n  Data reduction

n  Discretization and concept hierarchy generation

n  Summary

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October 19, 2011 Data Mining: Concepts and Techniques 81

Data Integration

n  Data integration: n  Combines data from multiple sources into a coherent

store n  Schema integration: e.g., A.cust-id ≡ B.cust-#

n  Integrate metadata from different sources n  Entity identification problem:

n  Identify real world entities from multiple data sources, e.g., Bill Clinton = William Clinton

n  Detecting and resolving data value conflicts n  For the same real world entity, attribute values from

different sources are different n  Possible reasons: different representations, different

scales, e.g., metric vs. British units

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October 19, 2011 Data Mining: Concepts and Techniques 82

Handling Redundancy in Data Integration

n  Redundant data occur often when integration of multiple databases

n  Object identification: The same attribute or object may have different names in different databases

n  Derivable data: One attribute may be a “derived” attribute in another table, e.g., annual revenue

n  Redundant attributes may be able to be detected by correlation analysis

n  Careful integration of the data from multiple sources may help reduce/avoid redundancies and inconsistencies and improve mining speed and quality

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Normalisation

n  Making data comparable…

October 20, 2011 Data Mining: Concepts and Techniques 83

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Elements of microarray statistics Reference Test

M = log2R – log2G = log2(R/G)

A = 1/2 (log2R + log2G)

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Expression Profiler 86

Normalisation can be used to transform data

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October 19, 2011 Data Mining: Concepts and Techniques 87

Chapter 2: Data Preprocessing

n  Why preprocess the data?

n  Data cleaning

n  Data integration and transformation

n  Data reduction

n  Discretization and concept hierarchy generation

n  Summary

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October 19, 2011 Data Mining: Concepts and Techniques 88

Data Reduction Strategies

n  Why data reduction? n  A database/data warehouse may store terabytes of data n  Complex data analysis/mining may take a very long time to run

on the complete data set n  Data reduction

n  Obtain a reduced representation of the data set that is much smaller in volume but yet produce the same (or almost the same) analytical results

n  Data reduction strategies n  Data cube aggregation: n  Dimensionality reduction — e.g., remove unimportant attributes n  Data Compression n  Numerosity reduction — e.g., fit data into models n  Discretization and concept hierarchy generation

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October 19, 2011 Data Mining: Concepts and Techniques 89

Data Cube Aggregation

n  The lowest level of a data cube (base cuboid)

n  The aggregated data for an individual entity of interest

n  E.g., a customer in a phone calling data warehouse

n  Multiple levels of aggregation in data cubes

n  Further reduce the size of data to deal with

n  Reference appropriate levels

n  Use the smallest representation which is enough to solve the task

n  Queries regarding aggregated information should be answered using data cube, when possible

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October 19, 2011 Data Mining: Concepts and Techniques 90

Attribute Subset Selection

n  Feature selection (i.e., attribute subset selection): n  Select a minimum set of features such that the

probability distribution of different classes given the values for those features is as close as possible to the original distribution given the values of all features

n  reduce # of patterns in the patterns, easier to understand

n  Heuristic methods (due to exponential # of choices): n  Step-wise forward selection n  Step-wise backward elimination n  Combining forward selection and backward elimination n  Decision-tree induction

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October 19, 2011 Data Mining: Concepts and Techniques 91

Chapter 2: Data Preprocessing

n  Why preprocess the data?

n  Data cleaning

n  Data integration and transformation

n  Data reduction

n  Discretization and concept hierarchy generation

n  Summary

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October 19, 2011 Data Mining: Concepts and Techniques 92

Discretization

n  Three types of attributes:

n  Nominal — values from an unordered set, e.g., color, profession

n  Ordinal — values from an ordered set, e.g., military or academic

rank

n  Continuous — real numbers, e.g., integer or real numbers

n  Discretization:

n  Divide the range of a continuous attribute into intervals

n  Some classification algorithms only accept categorical attributes.

n  Reduce data size by discretization

n  Prepare for further analysis

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October 19, 2011 Data Mining: Concepts and Techniques 93

Discretization and Concept Hierarchy

n  Discretization

n  Reduce the number of values for a given continuous attribute by

dividing the range of the attribute into intervals

n  Interval labels can then be used to replace actual data values

n  Supervised vs. unsupervised

n  Split (top-down) vs. merge (bottom-up)

n  Discretization can be performed recursively on an attribute

n  Concept hierarchy formation

n  Recursively reduce the data by collecting and replacing low level

concepts (such as numeric values for age) by higher level concepts

(such as young, middle-aged, or senior)

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October 19, 2011 Data Mining: Concepts and Techniques 94

Segmentation by Natural Partitioning

n  A simply 3-4-5 rule can be used to segment numeric data

into relatively uniform, “natural” intervals.

n  If an interval covers 3, 6, 7 or 9 distinct values at the

most significant digit, partition the range into 3 equi-

width intervals

n  If it covers 2, 4, or 8 distinct values at the most

significant digit, partition the range into 4 intervals

n  If it covers 1, 5, or 10 distinct values at the most

significant digit, partition the range into 5 intervals

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October 19, 2011 Data Mining: Concepts and Techniques 95

Example of 3-4-5 Rule

(-$400 -$5,000)

(-$400 - 0) (-$400 - -$300) (-$300 - -$200) (-$200 - -$100)

(-$100 - 0)

(0 - $1,000) (0 - $200) ($200 - $400)

($400 - $600)

($600 - $800) ($800 -

$1,000)

($2,000 - $5, 000)

($2,000 - $3,000)

($3,000 - $4,000)

($4,000 - $5,000)

($1,000 - $2, 000) ($1,000 - $1,200)

($1,200 - $1,400)

($1,400 - $1,600)

($1,600 - $1,800) ($1,800 -

$2,000)

msd=1,000 Low=-$1,000 High=$2,000 Step 2:

Step 4:

Step 1: -$351 -$159 profit $1,838 $4,700 Min Low (i.e, 5%-tile) High(i.e, 95%-0 tile) Max

count

(-$1,000 - $2,000)

(-$1,000 - 0) (0 -$ 1,000) Step 3:

($1,000 - $2,000)

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Example  

October 19, 2011 Data Mining: Concepts and Techniques 96

-351,976.00 .. 4,700,896.50 MIN=-351,976.00 MAX=4,700,896.50 LOW = 5th percentile -159,876 HIGH = 95th percentile 1,838,761 msd = 1,000,000 (most significant digit) LOW = -1,000,000 (round down) HIGH = 2,000,000 (round up) 3 value ranges 1. (-1,000,000 .. 0] 2. (0 .. 1,000,000] 3. (1,000,000 .. 2,000,000] Adjust with real MIN and MAX 1. (-400,000 .. 0] 2. (0 .. 1,000,000] 3. (1,000,000 .. 2,000,000] 4. (2,000,000 .. 5,000,000]

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Jaak  Vilo  and  other  authors   UT:  Data  Mining  2009   97  

Recursive … 1.1. (-400,000 .. -300,000 ] 1.2. (-300,000 .. -200,000 ] 1.3. (-200,000 .. -100,000 ] 1.4. (-100,000 .. 0 ] 2.1. (0 .. 200,000 ] 2.2. (200,000 .. 400,000 ] 2.3. (400,000 .. 600,000 ] 2.4. (600,000 .. 800,000 ] 2.5. (800,000 .. 1,000,000 ] 3.1. (1,000,000 .. 1,200,000 ] 3.2. (1,200,000 .. 1,400,000 ] 3.3. (1,400,000 .. 1,600,000 ] 3.4. (1,600,000 .. 1,800,000 ] 3.5. (1,800,000 .. 2,000,000 ] 4.1. (2,000,000 .. 3,000,000 ] 4.2. (3,000,000 .. 4,000,000 ] 4.3. (4,000,000 .. 5,000,000 ]

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Concept Hierarchy Generation for Categorical Data

•  Specification of a partial/total ordering of attributes explicitly at the schema level by users or experts

–  street < city < state < country

•  Specification of a hierarchy for a set of values by explicit data grouping

–  {Urbana, Champaign, Chicago} < Illinois

•  Specification of only a partial set of attributes

–  E.g., only street < city, not others

•  Automatic generation of hierarchies (or attribute levels) by the analysis of the number of distinct values

–  E.g., for a set of attributes: {street, city, state, country} October 19, 2011 Data  Mining:  Concepts  and  Techniques   98

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October 19, 2011 Data Mining: Concepts and Techniques 99

Automatic Concept Hierarchy Generation

n  Some hierarchies can be automatically generated based on the analysis of the number of distinct values per attribute in the data set n  The attribute with the most distinct values is placed

at the lowest level of the hierarchy n  Exceptions, e.g., weekday, month, quarter, year

country

province_or_ state

city

street

15 distinct values

365 distinct values

3567 distinct values

674,339 distinct values

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October 19, 2011 Data Mining: Concepts and Techniques 100

Chapter 2: Data Preprocessing

n  Why preprocess the data?

n  Data cleaning

n  Data integration and transformation

n  Data reduction

n  Discretization and concept hierarchy

generation

n  Summary

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October 19, 2011 Data Mining: Concepts and Techniques 101

Summary

n  Data preparation or preprocessing is a big issue for both data warehousing and data mining

n  Discriptive data summarization is need for quality data preprocessing

n  Data preparation includes

n  Data cleaning and data integration

n  Data reduction and feature selection

n  Discretization

n  A lot a methods have been developed but data preprocessing still an active area of research

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October 19, 2011 Data Mining: Concepts and Techniques 102

References

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n  H.V. Jagadish et al., Special Issue on Data Reduction Techniques. Bulletin of the Technical

Committee on Data Engineering, 20(4), December 1997

n  D. Pyle. Data Preparation for Data Mining. Morgan Kaufmann, 1999

n  E. Rahm and H. H. Do. Data Cleaning: Problems and Current Approaches. IEEE Bulletin of the Technical Committee on Data Engineering. Vol.23, No.4

n  V. Raman and J. Hellerstein. Potters Wheel: An Interactive Framework for Data Cleaning and

Transformation, VLDB’2001

n  T. Redman. Data Quality: Management and Technology. Bantam Books, 1992

n  Y. Wand and R. Wang. Anchoring data quality dimensions ontological foundations. Communications of

ACM, 39:86-95, 1996

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