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CMU SCS 15-826(c) C. Faloutsos and J-Y Pan (2013)#1 15-826: Multimedia Databases and Data Mining...
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Transcript of CMU SCS 15-826(c) C. Faloutsos and J-Y Pan (2013)#1 15-826: Multimedia Databases and Data Mining...
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #1
15-826: Multimedia Databasesand Data Mining
Lecture #21:
Independent Component Analysis (ICA)
Jia-Yu Pan and Christos Faloutsos
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #2
Must-read Material
• AutoSplit: Fast and Scalable Discovery of Hidden Variables in Stream and Multimedia Databases, Jia-Yu Pan, Hiroyuki Kitagawa, Christos Faloutsos and Masafumi Hamamoto, PAKDD 2004, Sydney, Australia
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #3
Outline
• Motivation
• Formulation
• PCA and ICA
• Example applications
• Conclusion
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #4
Motivation: (Q1) Find patterns in data
• Motion capture data: broad jumps
Left Knee
Right KneeEnergy exerted
Take-offLanding
Energy exerted
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #5
Motivation: (Q1) Find patterns in data
• Human would say– Pattern 1: along
diagonal– Pattern 2: along
vertical axis
• How to find these automatically?
Each point is the measurement at a time tick (total 550 points).
Take-off
LandingR:L=60:1
R:L=1:1
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #6
Motivation: (Q2) Find hidden variables
Hidden variables (=‘topics’ = concepts)
“Internet bubble”
Alcoa
American Express
Boeing
Citi Group
…
“General trend”
Stock prices
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #7
Motivation:(Q2) Find hidden variables
“General trend”
“Internet bubble”
0.940.030.63
0.64
Caterpillar
Intel
Hidden variables
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #8
Motivation:(Q2) Find hidden variables
Hidden variable 1 Hidden variable 2
B1,CAT
B1,INTC B2,CAT
B2,INTC?
? ?
Caterpillar
Intel
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #9
Motivation:Find hidden variables
• There are two sound sources in a cocktail party…
=“blind source separation”(= we don’t know the sources, nor their mixing)
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #10
Outline
• Motivation
• Formulation
• PCA and ICA
• Example applications
• Conclusion
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #11
Formulation: Finding patterns
Given n data points, each with m attributes.
Find patterns that describe data properties the best.
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #12
Linear representation
• Find vectors that describe the data set the best.
• Each point: linear combination of the vectors (patterns):
22,1, bbx 1i
ii hh
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #13
Patterns as data “vocabulary”
Good pattern ≈ sparse coding
(Q) Given data xi’s, compute hi,j’s and bi’s that are “sparse”?
Only b1 is needed to describe xi.
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #14
Patterns in motion capture data
b2
b1
n=550 ticks
2
2,1,
2,21,2
2,11,1
nxX
nn xx
xx
xx
Data matrix
Left Right
222
2
2,1,
2,21,2
2,11,1
xnx
1
BH
b
b
nn hh
hh
hh
Basis vectors
Hidden variables
? ?
Sparse ~ non-Gaussian ~ “Independent”
“Independent”: e.g., minimize mutual information.
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #15
Patterns in motion capture data
2
2,1,
2,21,2
2,11,1
nxX
nn xx
xx
xx
Data matrix
222
2
2,1,
2,21,2
2,11,1
xnx
1
BH
b
b
nn hh
hh
hh
Basis vectors
Hidden variables
? ?
X = (U ) VT
Sparse ~ non-Gaussian ~ “Independent”
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #16
Outline
• Motivation
• Formulation
• PCA and ICA
• Example applications– Find topics in documents– Hidden variables in stock prices
• Conclusion
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #17
Pattern discovery with ICA: AutoSplit [PAKDD 04][WIRI 05]
Step 1: Data points (matrix)
Step 2:Compute patterns
Step 3:Interpret patterns
…
or
or
…
…
Data mining(Case studies)
(Q) What pattern?
(Q) Different modalities
(Q) How?
Video frames
Stock prices
Text documents
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #18
Finding patterns in high-dimensional data
PCA finds the hyperplane. ICA finds the correct patterns.
Dimensionality reduction
details
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #19
Outline• Motivation• Formulation• PCA and ICA• Example applications
– Find topics in documents– Hidden variables in stock prices– Visual vocabulary for retinal images
• Conclusion
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #20
Topic discovery on text streams
• Data: CNN headline news (Jan.-Jun. 1998)
• Documents of 10 topics in one single text stream – Documents are sorted by date/time
– Subsequent documents may have different topics
Date/TimeTopic 1 Topic 3 Topic 1…
…
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #21
Topic discovery on text streams
• Data: CNN headline news (Jan.-Jun. 1998)
• Documents of 10 topics in one single text stream – FIND: the document boundaries– AND: the terms of each topic
Date/Time
…
??
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #22
Topic discovery on text streams
• Known: number of topics = 10
• Unknown: (1) topic of each document (2) topic description
Date/TimeTopic 1 Topic 3 Topic 1…
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #23
Topic discovery in documents
X[nxm]
xi = [1, 5, …, 0]
Step 1
Windowing
Step 2
X[nxm’] = H[nxm’] B[m’xm’]
(1) Find hyperplane (m’=10)
(2) Find patterns
aaronzoo
m=3887 (dictionary size)
(n=1659)New stories
…
(30 words)
Step 3
b’i = [0, 0.7, …, 0.6]aaron
zooanim
al
B’[10x3887]
'
'
'
10
2
1
b
b
b
(Q) What does b’i mean?
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #24
Step 3: Interpret the patterns
b’i = [0, 0.7, …, 0.6]
aaronzooanim
al
Topicsfound
A hidden topic!
Top words : “animal”, “zoo”, …
ID Sorted word list
A Mckinne Sergeant sexual Major Armi
B bomb Rudolph Clinic Atlanta Birmingham
C Winfrei Beef Texa Oprah Cattl
D Viagra Drug Impot Pill Doctor
E Zamora Graham Kill Former Jone
F Medal Olymp Gold Women Game
G Pope Cube Castro Cuban Visit
H Asia Economi Japan Econom Asian
I Super Bowl Game Team Re
J Peopl Tornado Florida Re bomb
General idea: related to the data attributes
'
'
'
10
2
1
b
b
b
m=3887 (dictionary size)
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #25
Step 3: Evaluate the patternsID True Topic
1 Sgt. Gene Mckinney is on trial for alleged sexual misconduct
2 A bomb explodes in a Birmingham, AL abortion clinic
3 The Cattle Industry in Texas sues Oprah Winfrey for defaming beef
4 New impotency drug Viagra is approved for use
5 Diane Zamora is convicted of helping to murder her lover’s girlfriend
6 1998 Winter Olympic games
7 The Pope’s historic visit to Cube in Winter 1998
8 The economic crisis in Asia
9 Superbowl XXXII
10 Tornado in Florida
AutoSplit finds correct topics.
ID Sorted word list
A mckinne sergeant sexual major armi
B bomb rudolph clinic atlanta birmingham
C winfrei beef texa oprah cattl
D viagra drug Impot pill doctor
E zamora graham kill former jone
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #26
Step 3: Evaluate the patternsID AutoSplit
A mckinne sergeant sexual major armi
B bomb rudolph clinic atlanta birmingham
C winfrei beef texa oprah cattl
D viagra drug Impot pill doctor
E zamora graham kill former jone
AutoSplit’s topics are better than PCA.
ID PCA
A’ mckinne bomb women sexual sergeant
B’ bomb mckinne rudolph clinic atlanta
C’ winfrei viagra texa beef oprah
D’ viagra winfrei drug texa beef
E’ zamora viagra winfrei graham olymp
ID PCA
A’ mckinne bomb women sexual sergeant
B’ bomb mckinne rudolph clinic atlanta
C’ winfrei viagra texa beef oprah
D’ viagra winfrei drug texa beef
E’ zamora viagra winfrei graham olymp
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #27
Step 3: Evaluate the patternsAutoSplit
A
B
C
D
E
AutoSplit’s topics are better than PCA.
PCA
A’
B’
C’
D’
E’PCA vectors mix the topics.
Topic 1
Topic 2
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #28
Outline
• Motivation
• Formulation
• PCA and ICA
• Example applications– Find topics in documents– Hidden variables in stock prices
• Conclusion
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #29
Find hidden variables (DJIA stocks)
• Weekly DJIA closing prices– 01/02/1990-08/05/2002, n=660 data points– A data point: prices of 29 companies at the time
Alcoa
American Express
Boeing
Caterpillar
Citi Group
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #30
Formulation: Find hidden variables
AA1, …, XOM1
…
…
AAn, …, XOMn
H11, H12, …, H1m
…
…
Hn1, Hn2, …, Hnm
=
B11, B12, …, B1m
…
Bm1, Bm2, …, Bmm ? ?
Date Hidden variable
Date
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #31
Characterize hidden variable by the companies it influences
“General trend” “Internet bubble”
0.940.63 0.03
0.64
Caterpillar
Intel
B1,CAT
B1,INTC B2,CAT
B2,INTC
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #32
Companies related to hidden variable 1
B1,j
Highest Lowest
Caterpillar 0.938512 AT&T 0.021885
Boeing 0.911120 WalMart 0.624570
MMM 0.906542 Intel 0.638010
Coca Cola 0.903858 Home Depot 0.647774
Du Pont 0.900317 Hewlett-Packard 0.658768
“General trend”
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #33
Companies related to hidden variable 1
B1,j
Highest Lowest
Caterpillar 0.938512 AT&T 0.021885
Boeing 0.911120 WalMart 0.624570
MMM 0.906542 Intel 0.638010
Coca Cola 0.903858 Home Depot 0.647774
Du Pont 0.900317 Hewlett-Packard 0.658768
All companies are affected by the “general trend” variable (with weights 0.6~0.9), except AT&T.
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #34
General trend (and outlier)
“General trend”
AT&T
United Technologies
Walmart
Exxon Mobil
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #35
Companies related to hidden variable 2
B2,j
Highest Lowest
Intel 0.641102 Philip Morris -0.194843
Hewlett-Packard 0.621159 International Paper -0.089569
GE 0.509164 Caterpillar 0.031678
American Express 0.504871 Procter and Gamble 0.109576
Disney 0.490529 Du Pont 0.133337
2000-2001 “Internet bubble”
Tech company
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #36
Companies related to hidden variable 2
B2,j
Highest Lowest
Intel 0.641102 Philip Morris -0.194843
Hewlett-Packard 0.621159 International Paper -0.089569
GE 0.509164 Caterpillar 0.031678
American Express 0.504871 Procter and Gamble 0.109576
Disney 0.490529 Du Pont 0.133337
Companies affected by the “internet bubble” variable (with weights 0.5~0.6) are tech-related.Other companies are un-related (weights < 0.15).
Tech company
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #37
Outline• Motivation• Formulation• PCA and ICA• Example applications
– Find topics in documents– Hidden variables in stock prices– Visual vocabulary for retinal images
• Conclusion
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #38
Conclusion• ICA: more flexible than PCA in finding
patterns.
• Many applications– Find topics and “vocabulary” for images– Find hidden variables in time series (e.g., stock
prices)– Blind source separation
ICA
PCA
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #39
Citation
• AutoSplit: Fast and Scalable Discovery of Hidden Variables in Stream and Multimedia Databases, Jia-Yu Pan, Hiroyuki Kitagawa, Christos Faloutsos and Masafumi Hamamoto
PAKDD 2004, Sydney, Australia
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #40
References
• Jia-Yu Pan, Andre Guilherme Ribeiro Balan, Eric P. Xing, Agma Juci Machado Traina, and Christos Faloutsos. Automatic Mining of Fruit Fly Embryo Images. In Proceedings of the Twelfth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2006.
• Arnab Bhattacharya, Vebjorn Ljosa, Jia-Yu Pan, Mark R. Verardo, Hyungjeong Yang, Christos Faloutsos, and Ambuj K. Singh. ViVo: Visual Vocabulary Construction for Mining Biomedical Images. In Proceedings of the Fifth IEEE International Conference on Data Mining (ICDM), 2005.
• Masafumi Hamamoto, Hiroyuki Kitagawa, Jia-Yu Pan, and Christos Faloutsos. A Comparative Study of Feature Vector-Based Topic Detection Schemes for Text Streams. In Proceedings of International Workshop on Challenges in Web Information Retrieval and Integration (WIRI), 2005, pp.125-130.
• Jia-Yu Pan, Hiroyuki Kitagawa, Christos Faloutsos, and Masafumi Hamamoto. AutoSplit: Fast and Scalable Discovery of Hidden Variables in Stream and Multimedia Databases. In Proceedings of the The Eighth Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), 2004.
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #41
References
• Aapo Hyvärinen, Juha Karhunen, Erkki Oja: Independent Component Analysis, John Wiley & Sons, 2001
CMU SCS
15-826 (c) C. Faloutsos and J-Y Pan (2013) #42
Software
• Open source software: ‘fastICA’ http://research.ics.tkk.fi/ica/fastica/
• Or ‘autosplit’:
www.cs.cmu.edu/~jypan/software/autosplit_cmu.tar.gz