Ch03 the Cellular Level of Organization

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    Chapter 3

    The Cellular Level of

    Organization

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    A Generalized Cell

    1. Plasma membrane

    - forms the cells outer boundary

    - separates the cells internal environmentfrom the outside environment

    - is a selective barrier

    - plays a role in cellular communication

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    A Generalized Cell

    2. Cytoplasm

    - all the cellular contents between the plasmamembrane and the nucleus

    - cytosol - the fluid portion, mostly water

    - organelles - subcellular structures havingcharacteristic shapes and specific functions

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    A Generalized Cell

    3. Nucleus

    - large organelle that contains DNA

    - contains chromosomes,each of which

    consists of a single molecule of DNA and

    associated proteins

    - a chromosome contains thousands ofhereditary units called genes

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    Fig. 3.1 Generalized Body Cell

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    Plasma Membrane

    Flexible yet sturdy barrier

    The fluid mosaic model- the arrangement ofmolecules within the membrane resembles a

    sea of lipids containing many types ofproteins

    The lipids act as a barrier to certain

    substances The proteins act as gatekeepers to certain

    molecules and ions

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    Structure of a Membrane

    Consists of a lipid bilayer - made up ofphospholipids, cholesterol and glycolipids

    Integral proteins - extend into or through the

    lipid bilayer

    Transmembrane proteins - most integralproteins, span the entire lipid bilayer

    Peripheral proteins - attached to the inneror outer surface of the membrane, do notextend through it

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    Structure of the Plasma Membrane

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    Structure of aMembrane

    Glycoproteins - membrane proteins with acarbohydrate group attached that protrudesinto the extracellular fluid

    Glycocalyx - the sugary coatingsurrounding the membrane made up of thecarbohydrate portions of the glycolipids and

    glycoproteins

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    Functions of Membrane Proteins

    Some integral proteins are ion channels

    Transporters - selectively move substancesthrough the membrane

    Receptors - for cellular recognition; a ligandis a molecule that binds with a receptor

    Enzymes - catalyze chemical reactions

    Others act as cell-identity markers

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    Figure 3.3

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    Membrane Permeability

    The cell is either permeable or impermeableto certain substances

    The lipid bilayer is permeableto oxygen,

    carbon dioxide, water and steroids, butimpermeableto glucose

    Transmembrane proteins act as channels

    and transporters to assist the entrance ofcertain substances, for example, glucose andions

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    Passive vs. Active Processes

    Passive processes - substances move acrosscell membranes without the input of anyenergy; use the kinetic energyof individual

    molecules or ions Active processes - a cell uses energy,

    primarily from the breakdown of ATP, to

    move a substance across the membrane, i.e.,against a concentration gradient

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    Diffusion

    Steepness of

    concentrationgradient

    Temperature

    Mass of diffusingsubstance

    Surface area Diffusion

    distance

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    Simple Diffusion, Channel-mediated

    Facilitated Diffusion, and Carrier-mediated

    Facilitated Diffusion

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    Channel-mediated Facilitated Diffusion of

    Potassium ions through a Gated K+ Channel

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    Carrier-mediated Facilitated Diffusion of

    Glucose across a Plasma Membrane

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    Glucosetransporter

    Glucosegradient

    Glucose

    Extracellular fluid Plasma membrane Cytosol

    1

    Glucosetransporter

    Glucosegradient

    Glucose

    Extracellular fluid Plasma membrane Cytosol

    1

    2

    Glucosetransporter

    Glucosegradient

    Glucose

    Glucose

    Extracellular fluid Plasma membrane Cytosol

    1

    2

    3

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    Osmosis

    Net movement of water through aselectively permeable membrane from anarea of high concentration of water (lowerconcentration of solutes) to one of lower

    concentration of water Water can pass through plasma membrane

    in 2 ways:

    1. through lipid bilayer by simple diffusion

    2. through aquaporins, integral membraneproteins

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    Tonicity and its effect on RBCS

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    Active TransportSolutes are transported across plasma membranes with the use of energy, from an area

    of lower concentration to an area of higher Concentration Sodium-potassium pump

    1

    3 Na+

    K+gradient

    Na+gradient

    Na+/K+ ATPase

    Extracellular fluid

    Cytosol

    1

    3 Na+ expelled

    3 Na+

    ADP

    P

    K+gradient

    Na+gradient

    Na+/K+ ATPase

    Extracellular fluid

    CytosolATP

    21

    3 Na+ expelled

    3 Na+

    ADPP

    P

    K+gradient

    Na+gradient

    Na+/K+ ATPase

    Extracellular fluid

    Cytosol

    2K+

    ATP2 31

    3 Na+ expelled

    3 Na+

    ADPP

    P

    2 K+

    imported

    K+gradient

    Na+gradient

    Na+/K+ ATPase

    Extracellular fluid

    Cytosol

    2K+

    ATP2 3 4

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    Transport in Vesicles

    Vesicle- a small spherical sac formed by budding offfrom a membrane

    Endocytosis - materials move into a cell in a vesicleformed from the plasma membrane

    three types: receptor-mediated endocytosisphagocytosisbulk-phase endocytosis (pinocytosis)

    Exocytosis - vesicles fuse with the plasmamembrane, releasing their contents into theextracellular fluid

    Transcytosis - a combination of endocytosis andexocytosis

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    Receptor-Mediated Endocytosis

    1 Binding

    1 Binding

    1 Binding

    1 Binding

    1 Binding

    1 Binding

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    1

    Clathrin-coatedpit

    Binding

    Receptor

    Receptor-LDLcomplex

    LDL particle Plasmamembrane

    Invaginated plasmamembrane

    1

    Clathrin-coatedvesicle

    Clathrin-coatedpit

    Binding

    Vesicle formation

    Receptor

    Receptor-LDLcomplex

    LDL particle Plasmamembrane

    Invaginated plasmamembrane

    2

    1

    Clathrin-coatedvesicle

    Clathrin-coatedpit

    Binding

    Vesicle formation

    Receptor

    Receptor-LDLcomplex

    Uncoated vesicle

    Uncoating

    LDL particle Plasmamembrane

    Invaginated plasmamembrane

    2

    3

    1

    Clathrin-coatedvesicle

    Clathrin-coatedpit

    Binding

    Vesicle formation

    Receptor

    Receptor-LDLcomplex

    Uncoated vesicle

    Fusion with

    endosome

    Uncoating

    LDL particle Plasmamembrane

    Invaginated plasmamembrane

    Endosome

    2

    3

    4

    Transportvesicle

    1

    Clathrin-coatedvesicle

    Clathrin-coatedpit

    Binding

    Vesicle formation

    Receptor

    Receptor-LDLcomplex

    Uncoated vesicleTransportvesicle

    Fusion with

    endosome

    Recyclingof receptorsto plasmamembrane

    Uncoating

    LDL particle Plasmamembrane

    Invaginated plasmamembrane

    Endosome

    2

    3

    4

    5

    Transportvesicle

    1

    Clathrin-coatedvesicle

    Clathrin-coatedpit

    Binding

    Vesicle formation

    Receptor

    Receptor-LDLcomplex

    Uncoated vesicle

    Degradationin lysosome

    Lysosome

    Transportvesicle

    Transportvesicle

    Fusion with

    endosome

    Recyclingof receptorsto plasmamembrane

    Uncoating

    LDL particle Plasmamembrane

    Invaginated plasmamembrane

    Endosome

    Digestiveenzymes

    2

    3

    4

    5

    6

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    Phagocytosis

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    Bulk-phase Endocytosis

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    Cytoplasm - 2 components

    1. Cytosol - intracellular fluid, surrounds the organelles

    - the site of many chemical reactions

    - energy is usually released by these reactions

    - reactions provide the building blocks for cell maintenance,

    structure, function and growth

    2. Organelles

    Specialized structures within the cell

    The cytoskeleton - network of protein filaments throughout the

    cytosol-provides structural support for the cell

    -three types according to increasing size: microfilaments,intermediate filaments, and microtubules

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    The Cytoskeleton

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    Organelles

    Centrosome - located near the nucleus,consists of two centrioles and pericentriolarmaterial (Fig. 2.7)

    Cilia - short, hair-like projections from the cellsurface, move fluids along a cell surface

    Flagella - longer than cilia, move an entire

    cell;only example is the sperm cells tail (Fig.2.8)

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    The Centrosome

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    Cilia and Flagella

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    Organelles

    Ribosomes - sites of protein synthesis

    Endoplasmic reticulum - network of membranes inthe shape of flattened sacs or tubules

    - Rough ER -connected to the nuclear envelope, aseries of flattened sacs, surface is studded withribosomes, produces various proteins

    -Smooth ER- a network of membrane tubules, does

    not have ribosomes, synthesizes fatty acids andsteroids, detoxifies certain drugs

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    Ribosomes

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    Endoplasmic Reticulum

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    Organelles

    Golgi complex - consists of 3-20 flattened,membranous sacs called cisternae

    - modify, sort, and package proteins for

    transport to different destinations

    - proteins are transported by variousvesicles

    Lysosomes - vesicles that form from the Golgicomplex, contain powerful digestive enzymes

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    Golgi Complex

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    Processing and Packaging

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    Lysosomes

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    Organelles

    Peroxisomes - smaller than lysosomes,detoxify several toxic substances such asalcohol, abundant in the liver

    Proteasomes - continuously destroyunneeded, damaged, or faulty proteins, foundin the cytosol and the nucleus

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    Organelles

    Mitochondria - the powerhouses of the cell

    Generate ATP

    More prevalent in physiologically active cells: muscles, liverand kidneys

    Inner and outer mitochondrial membranes

    Cristae- the series of folds of the inner membrane

    Matrix- the large central fluid-filled cavity

    Self-replicate during times of increased cellular demand or

    before cell division

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    Mitochondria

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    Organelles - Nucleus

    Spherical or oval shaped structure

    Usually most prominent feature of a cell

    Nuclear envelope- a double membrane thatseparates the nucleus from the cytoplasm

    Nuclear pores- numerous openings in the nuclear

    envelope, control movement of substances betweennucleus and cytoplasm

    Nucleolus- spherical body that produces ribosomes

    Genes- are the cells hereditary units, control

    activities and structure of the cell Chromosomes- long molecules of DNA combined

    with protein molecules

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    Packing of DNA into a Chromosome of a

    Dividing Cell

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    Overview of Gene Expression

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    Transcription

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    Translation

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    Somatic Cell Division - Mitosis

    The cell cycle is a sequence of events inwhich a body cell duplicates its contents anddivides in two

    Human somatic cells contain 23 pairs ofchromosomes (total = 46)

    The two chromosomes that make up eachpair are called homologous chromosomes

    (homologs) Somatic cells contain two sets of

    chromosomes and are called diploid cells

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    Cell Division

    Interphase - the cell is not dividing

    - the cell replicates its DNA

    - consists of three phases, G1, S, and G2,

    replication of DNA occurs in the S phaseMitotic phase - consists of a nuclear division(mitosis) and a cytoplasmic division

    (cytokinesis) to form two identical cells

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    The Cell Cycle

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    DNA Replication

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    Nuclear Division: Mitosis

    Prophase- the chromatin fibers change intochromosomes

    Metaphase - microtubules align the centromeres ofthe chromatid pairs at the metaphase plate

    Anaphase- the chromatid pairs split at thecentromere and move to opposite poles of the cell;the chromatids are now called chromosomes

    Telophase- two identical nuclei are formed aroundthe identical sets of chromosomes now in theirchromatin form

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    Cytoplasmic Division: Cytokinesis

    Division of a cells cytoplasm to form twoidentical cells

    Usually begins in late anaphase

    The plasma membrane constricts at itsmiddle forming a cleavage furrow

    The cell eventually splits into two daughtercells

    Interphase begins when cytokinesis iscomplete

    1

    Pericentriolar materialCentrioles

    Centrosome:

    1

    Pericentriolar materialCentrioles

    Centrosome:

    1

    Pericentriolar materialCentrioles

    Centrosome:

    1

    Pericentriolar materialCentrioles

    Centrosome:

    1

    Pericentriolar materialCentrioles

    Centrosome:

    1

    Pericentriolar materialCentrioles

    Centrosome:

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    NucleolusNuclear envelopeChromatinPlasma membrane

    Cytosol

    (a) INTERPHASE

    all at 700xLM

    LateEarly

    NucleolusNuclear envelopeChromatinPlasma membrane

    Cytosol

    Chromosome(two chromatidsjoined atcentromere

    (a) INTERPHASE

    (b) PROPHASE

    Fragments ofnuclear envelope

    Mitotic spindle(microtubules)

    Kinetochore

    2

    all at 700xLM

    Centromere

    NucleolusNuclear envelopeChromatinPlasma membrane

    Cytosol

    Metaphase plate

    (a) INTERPHASE

    (c) METAPHASE

    2

    3

    LateEarly(b) PROPHASE

    Fragments ofnuclear envelope

    Mitotic spindle(microtubules)

    Kinetochore

    all at 700xLM

    Chromosome(two chromatidsjoined atcentromere

    Centromere

    EarlyLate(d) ANAPHASE

    NucleolusNuclear envelopeChromatinPlasma membrane

    Cytosol

    Chromosome

    (a) INTERPHASE

    (c) METAPHASE

    2

    3

    4

    Cleavagefurrow

    LateEarly(b) PROPHASE

    Fragments ofnuclear envelope

    Mitotic spindle(microtubules)

    Kinetochore

    Metaphase plate

    all at 700xLM

    Chromosome(two chromatidsjoined atcentromere

    Centromere

    EarlyLate(d) ANAPHASE

    NucleolusNuclear envelopeChromatinPlasma membrane

    Cytosol

    (a) INTERPHASE

    Cleavage furrow

    (e) TELOPHASE

    (c) METAPHASE

    2

    3

    4

    5

    Cleavagefurrow

    LateEarly(b) PROPHASE

    Fragments ofnuclear envelope

    Mitotic spindle(microtubules)

    Kinetochore

    Metaphase plate

    Chromosome

    all at 700xLM

    Chromosome(two chromatidsjoined atcentromere

    Centromere

    EarlyLate(d) ANAPHASE

    NucleolusNuclear envelopeChromatinPlasma membrane

    Cytosol

    (a) INTERPHASE

    (f) IDENTICAL CELLS IN INTERPHASE

    Cleavage furrow

    (e) TELOPHASE

    (c) METAPHASE

    Cleavagefurrow

    2

    3

    4

    5

    6

    LateEarly(b) PROPHASE

    Fragments ofnuclear envelope

    Mitotic spindle(microtubules)

    Kinetochore

    Metaphase plate

    Chromosome

    all at 700xLM

    Centromere

    Chromosome(two chromatidsjoined atcentromere

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    R d i C ll Di i i

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    Reproductive Cell Division

    During sexual reproduction each new organism isthe result of the union of two gametes (fertilization),one from each parent

    Meiosis - reproductive cell division that occurs inthe gonads (ovaries and testes) that producesgametes with half the number of chromosomes

    Haploid cells - gametes contain a single set of 23

    chromosomes Fertilization restores the diploid number of

    chromosomes (46)

    R d i C ll Di i i

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    Reproductive Cell Division

    Meiosis occurs in two successive stages:meiosis I and meiosis II

    Each of these two stages has 4 phases:prophase, metaphase, anaphase, and

    telophase Summary - Meiosis I begins with a diploid cell

    and ends with two cells having the haploidnumber of chromosomes; in Meiosis II, each

    of the two haploid cells divides, the net resultis four haploid gametes that are geneticallydifferent from the original diploid starting cell

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    Leptotene stage condensation of chromatin

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    Leptotene stage- condensation of chromatinfibers into long, threadlike structures, similarto what occurs at the beginning of mitosis.

    Zygotene stage- individual chromosomesbecome distinguishable and homologouschromosomes become closely paired with

    each other via synapsis.

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    Pachytene stage crossing over or the

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    Pachytene stage- crossing over, or theexchange of DNA segments between thehomologous chromosomes.

    This accounts for genetic recombination.

    Each chromosome undergoes compactingprocess where the size is reduced to less

    than of its previous length.

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    Diplotene stage- homologous chromosome

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    Diplotene stage- homologous chromosomebegin to separate from each other particularlynear the centromere. They however, remainattached by connections known aschiasmata.

    Chiasmata regions where exchange of DNA

    materials has occured. Diakinesis- chromosomes recondense to

    their maximally compacted state. Nucleoli

    disappear, the spindle forms and the nuclearenvelope breaks down.

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    Cellular Diversity

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    Cellular Diversity

    The average adult hasnearly 100 trillion cells

    There are about 200different types of cells

    Cells come in a varietyof shapes and sizes

    Cellular diversity

    permits organization ofcells into more complextissues and organs

    E d f Ch 3

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    End of Chapter 3

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