Biology Design Studies
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Transcript of Biology Design Studies
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Biology Design Studies
• comparative functional genomics – Pathline
• comparative genomics (synteny)– MizBee
• gene expression + interaction network– Cerebral
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
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General Design Studies
• large-scale system monitoring– LiveRAC
• web logs– SessionViewer
• computational linguistics– Constellation
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
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Dimensionality Reduction
• visual dimensional analysis and reduction toolkit– DimStiller
• GPU accelerated MDS– Glimmer
• steerable MDS– MDSteer
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
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User Studies
• overview use– stretch and squish vs.
pan/zoom navigation– separate vs. integrated views
• impact of distortion on visual search, visual memory
• 2D points vs. 3D landscapes
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
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Graph/Tree Vis
• general multilevel graphs– layout
• TopoLayout
– interaction• Grouse, GrouseFlocks,
TugGraph
• evolutionary tree comparison– TreeJuxtaposer
• 3D hyperbolic graphs– H3
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
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Theory/Models
• nested model for design and validation
• papers process and pitfalls