1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny)...
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Transcript of 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny)...
![Page 1: 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny) –MizBee gene expression + interaction network –Cerebral.](https://reader030.fdocuments.us/reader030/viewer/2022032704/56649d595503460f94a391ef/html5/thumbnails/1.jpg)
1
Biology Design Studies
• comparative functional genomics – Pathline
• comparative genomics (synteny)– MizBee
• gene expression + interaction network– Cerebral
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
![Page 2: 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny) –MizBee gene expression + interaction network –Cerebral.](https://reader030.fdocuments.us/reader030/viewer/2022032704/56649d595503460f94a391ef/html5/thumbnails/2.jpg)
2
General Design Studies
• large-scale system monitoring– LiveRAC
• web logs– SessionViewer
• computational linguistics– Constellation
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
![Page 3: 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny) –MizBee gene expression + interaction network –Cerebral.](https://reader030.fdocuments.us/reader030/viewer/2022032704/56649d595503460f94a391ef/html5/thumbnails/3.jpg)
3
Dimensionality Reduction
• visual dimensional analysis and reduction toolkit– DimStiller
• GPU accelerated MDS– Glimmer
• steerable MDS– MDSteer
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
![Page 4: 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny) –MizBee gene expression + interaction network –Cerebral.](https://reader030.fdocuments.us/reader030/viewer/2022032704/56649d595503460f94a391ef/html5/thumbnails/4.jpg)
4
User Studies
• overview use– stretch and squish vs.
pan/zoom navigation– separate vs. integrated views
• impact of distortion on visual search, visual memory
• 2D points vs. 3D landscapes
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
![Page 5: 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny) –MizBee gene expression + interaction network –Cerebral.](https://reader030.fdocuments.us/reader030/viewer/2022032704/56649d595503460f94a391ef/html5/thumbnails/5.jpg)
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Graph/Tree Vis
• general multilevel graphs– layout
• TopoLayout
– interaction• Grouse, GrouseFlocks,
TugGraph
• evolutionary tree comparison– TreeJuxtaposer
• 3D hyperbolic graphs– H3
Tamara Munzner, UBC, http://www.cs.ubc.ca/~tmm
![Page 6: 1 Biology Design Studies comparative functional genomics –Pathline comparative genomics (synteny) –MizBee gene expression + interaction network –Cerebral.](https://reader030.fdocuments.us/reader030/viewer/2022032704/56649d595503460f94a391ef/html5/thumbnails/6.jpg)
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Theory/Models
• nested model for design and validation
• papers process and pitfalls