348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ...

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Transcript of 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ...

Page 1: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 2: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 3: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 4: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 5: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 6: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 7: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 8: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 9: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 10: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 11: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 12: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 13: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 14: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 15: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y
Page 16: 348-F - sanjesh.org · 348F AUG CAP UAG a. ATG ATTGG (pairwise alignment) , Jots PAM 10 PAM250(Ÿ BLOSUM 62 BLOSUM 10 Gap penalty —.S k (alignment) (Gap) - Bit score (Y

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Why? Sequence Alignment - School of Informatics · Sequence Alignment Armstrong, 2008 Why? • Genome sequencing gives us new gene sequences ... – PAM and BLOSUM Armstrong, 2008

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research.utdallas.edu · Web viewManual Top Side Alignment Instructions (Small Gap between mask and substrate)16 Manual Top Side Alignment Instructions (Large Gap)17 Top Side Small

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CS 466 Introduction to Bioinformatics - El-Kebir · Outline 1.Fitting alignment 2.Local alignment 3.Gapped alignment 4.BLOSUM scoring matrix Reading: •Jones and Pevzner. Chapters

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The AlignmenT-Focused orgAnizATion - ISSELissel.co.uk/.../uploads/2017/07/The_Alignment_Focused_Organizatio… · The AlignmenT-Focused . orgAnizATion. Bridging the gap Between Strategy

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Bridging the Gap: Fixing the problem of ITSM and ITAM alignment

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