The Human-Mouse: Disease Connection in Mouse Genome Informatics (MGI)

Post on 14-Jun-2015

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Slides to accompany video: http://youtu.be/vOtU51x9sLc This presentation provides a brief introduction to the clinical research and translational tool, the Human-Mouse: Disease Connection created by the Mouse Genome Informatics (MGI) database, and found online at www.informatics.jax.org. This tool and slides demonstrate how to straightforwardly make connections between genes and phenotypes, or genes and diseases using the wealth of phenotypic data generated by mouse researchers, or human clinical reports as curated by OMIM.

Transcript of The Human-Mouse: Disease Connection in Mouse Genome Informatics (MGI)

Module 3: The Human-Mouse: Disease Connection in MGI

Clinical genetic research and translation tool

Options for beginning a search:

Gja8Mapk10Rsph9Il20raJak3Frg1

Visual display of associated phenotype and disease results

Mammalian (mouse) Phenotypes

Human disease(OMIM)

Click to drill-down for more precise MP and allele IDs

Click right side to view disease

Visual display of associated phenotype and disease results

Other tabs for Genes & Diseases lists (downloadable)

Genes tab: downloadable, find references and mouse models

Diseases tab: downloadable, find all gene associations in human and mouse

Search terms can be combined

Chr1:150000000-250000000

.

type “cleft palate” (matches whole) or

type cleft palate (matches as two terms)

or selectcleft palate Mammalian phenotype

or selectCleft Palate; CP [Cleft palate isolated, CPI] OMIM

Combined search results for region AND annotation

at least one mouse homolog genotype contains “cleft palate” (or child term) as an MP annotation

same MP genotype is a disease model, or human disease name/synonym contains “cleft palate”

Summary

The Human-Mouse: Disease connection allows rapid accession and association of gene-phenotype or gene-disease information

Allows clinical researchers with human data to perform functional or phenotypic annotation to a gene list

Straightforward discovery of mouse models

contact mgi-help@jax.org with any questions