Alignment methods Introduction to global and local sequence alignment methods Global : Needleman-Wunch Local : Smith-Waterman Database Search BLAST FASTA.
Rationale for searching sequence databases May 11, 2004 Writing projects due May 25 Quiz #3 on Thurs., May 20 Learning objectives-Why do we search sequence.
Alignment methods June 26, 2007 Learning objectives- Understand how Global alignment program works. Understand how Local alignment program works.
MODELLER hands-on Ben Webb, Sali Lab, UC San Francisco Maya Topf, Birkbeck College, London.
BLAST What it does and what it means Steven Slater Adapted from mcs2/teaching/biocomp/ppt/BLAST_Sp10.p pt.
BLAST What it does and what it means
Alignment methods
Alignment methods and database searching
Alignment methods II April 24, 2007 Learning objectives- 1) Understand how Global alignment program works using the longest common subsequence method.
