Andy Conley 3/26/2012 1. James Kent. Know that name. He is one of greatest, perhaps the greatest, bioinformatics programmers ever. He was deeply involved.
NCBI’s Genome Annotation: Overview Incremental processing Re-annotation ( batch ) Post-annotation review Case studies NOTE: limiting discussion to annotation.
Comparative Genomics Ross Hardison, Penn State University Major collaborators: Webb Miller, Francesca Chiaromonte, Laura Elnitski, David King, et al.,
NCBI’s Genome Annotation: Overview
Ultraconserved Elements in the Human Genome
How do regulatory networks evolve?
MEME homework: probability of finding GAGTCA at a given position in the yeast genome, based on a background model of A = 0.3, T = 0.3, G = 0.2, C = 0.2.
Using vertebrate genome comparisons to find gene regulatory regions Ross Hardison and James Taylor Cold Spring Harbor course on Computational Genomics.
Evolution of bz Orthologous Regions in the Genus Zea and Relatives in the Andropogoneae
Comparative Genomics
Genome Browses and Data Display
