182
References
Aa, E., Townsend, J. P., Adams, R. I., Nielsen, K. M. and Taylor, J. W. (2006)
“Population structure and gene evolution in Saccharomyces cerevisiae”,
Federation of European Microbiological Societies, 702–715.
Abdelkrim, J., Pascal, M., Calmet, C. and Samadi, S. (2005) “Importance of
Assessing Population Genetic Structure before Eradication of Invasive
Species: Examples from insular Norway Rat Populations”, Conservation
Biology, 19(5), 1509-1518.
Abu-awwad, F. M. (2010) “QSAR Study of the Biologically Active Organosulfurs in
Natural Products”, E-journal of chemistry, 7(S1), S335-S343.
Alam, S.I., Bansod, S. and Singh, L. (2008) “Immunization against Clostridium
perfringens cells elicits protection against Clostridium tetani in mouse model:
identification of cross-reactive proteins using proteomic methodologies”, BMC
Microbiology, 8(194), 1 -7.
Ale, C. N. and Songer, J. R (1966) “Evaluation of crystal-violet glycerol hog choler
vaccine: comments on a proposed reproducible test”, American Journal of
Verterinary Research, 27(121), 1657-62.
Akula, S. P., Miriyala, R. N., Thota, H., Rao, A. A. and Gedela, S. (2009)
"Techniques for integrating -omics data", Bioinformation, 3(6), 284-286.
183
An, J., Nakama, T., Kubota and Sarai, A. (1998) “3DinSight: An Integrated Relational
Database and Search Tool for Structure, Function and Property of
Biomolecules”, Bioinformatics, 14, 188-195.
Ashley, T. R., Wiseman, B. R., Davis, F. M. and Andrews, K. L. (1989) “The fall
armyworm: a bibliography”, Florida Entomologist, 72, 152-202.
Attwood, T.K. (2002). "The PRINTS database: a resource for identification of protein
families”, Briefings in Bioinformatics, 3(3), 252-263.
Babu, P. A., Suneetha, G., Boddepalli, R., Lakshmi, V. V., Rani, T. S., Rambabu, Y.
and Srinivas, K. (2006) “A database of 389 medicinal plants for diabetes”,
Bioinformation, 1(4), 130-131.
Bateman, A., Birney, E., Cerruti, L., Durbin, R., Etwiller, L., Eddy, S. R., Jones, S.
G., Howe, K. L. and Marshall, M. (2002) “The Pfam Protein Families
Database”, Nucleic Acids Research, 30(1), 276-280.
Bartolucci, C., Haller, L. A., Jordis, U., Fels, G. and Lamba, D. (2010) “Probing
Torpedo californica Acetylcholinesterase Catalytic Gorge with Two Novel
Bis-functional Galanthamine Derivatives”, Journal of Medicinal Chemistry,
53 (2), 745–751.
184
Baxevanis, A.D. (2002) “The molecular biology database collection: 2002 update”,
Nucleic Acids Research, 30, 1-12.
Bergner, A., Gunther, J., Hendlich, M., Klebe, G. and Verdonk, M. (2001) “Use of
R—elibase for retrieving complex three-dimensional interaction patterns
including crystallographic packing effects”, Biopolymers, 61, 99–110.
Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H.,
Shindyalov, I. N. and Bourne, P. E. (2000) “The Protein Data Bank”, Nucleic
Acids Research, 28 (1), 235-242.
Bertram, L., Mcqueen, M. B., Mullin, K., Blacker, D. and Tanzi, R. E. (2007)
"Systematic meta-analyses of Alzheimer disease genetic association studies:
the AlzGene database", Nature Genetics, 39(1), 17-23.
Bertani, R., Fukushima, C.S. and Martins, R. (2008) “Sociable widow spiders?
Evidence of subsociality in LatrodectusWalckenaer, 1805 (Araneae,
Theridiidae)”, Journal of Ethology, 26 (2), 299–302.
Biswas, D., Roy, S. and Sen, S. (2006) “A simple approach for indexing the oral
druglikeness of a compound: discriminating druglike compounds from
nondruglike ones”, Journal of Chemical Information and Modeling, 46,
1394–1401.
185
Bista, M.B. (2001) “A collection of selected publications on communicable disease
including vector borne disease”, Infections Disease in Nepal, 1990-2000, 3-6.
Birney, E. and Clamp, M. E. (2004) “Biological database design and
implementation”, Briefings in Bioinformatics, 5(1), 31-38.
Block, P., Sotriffer, C. A., Dramburg, I. and Klebe, G. (2006) “AffinDB: a freely
accessible database of affinities for protein-ligand complexes from the PDB”,
Nucleic Acids Research, 34, D522–6.
Bobba, R. and Khan, Y. (2003) “Cancer in india- an overview”, Gorean journal,
5(4), 93-96.
Botella, H., Donoghue, P. C. J. and Martínez-Pérez, C. (2009) "Enameloid
microstructure in the oldest known chondrichthyan teeth", Acta Zoologica, 90
(1), 103–108.
Boutselakis, H., Dimitropoulos, D., Fillon, J., Golovin, A., Henrick, K., Hussain, A.,
Ionides, J., John, M., Keller, P. A., Krissinel, E., McNeil, P., Naim, P.,
Newman, R., Oldfield, T., Pineda, J., Rachedi, A., Copeland, J., Sitnov, A.,
Sobhany, S., Uruena, A. S., Swaminathan, J., Tagari, M., Tate, J., Tromm, S.,
Velankar, S., and Vranken, W. (2003) “E-MSD: the European Bioinformatics
Institute Macromolecular Structure Database”, Nucleic Acids Research, 31(1),
458-462.
186
Boutet, E., Lieberherr, D., Tognolli, M., Schneider, M. and Bairoch A., (2007)
“UniProtKB/Swiss-Prot.Methods”, Molecular Biology, 406, 89-112.
Burkholder, W. H., McFadden, L. H. and Dimock, A.W. (1953) “A bacterial blight of
chrysanthemums”, Phytopathology, 43, 522-525.
Buell, P. E. and Dunn, J.E. (1965) "Cancer mortality among Japanese Issei and Nisei
of California", Cancer, 18 (5), 656–64.
Castilho, C., Guido, R. V. and Andricopulo (2007) “Classical and Hologram: QSAR
Studies on a Series of Tacrine Derivatives as Butyrylcholinesterase
Inhibitors”, Letters in Drug Design and Discovery, 4, 106-113.
Chalk, A. J., Worth, C. L, Overington, J. P. and Chan, A. W. E. (2004) “PDBLIG:
classification of small molecular protein binding in the protein data bank”,
Journal of Medicinal Chemistry, 47, 3807–3816.
Chiang, H. C. and Hodson, A. C. (1950) "An analytical study of population growth in
Drosophila melanogaster", Ecological Monographs, 20 (3), 173–206.
Chen, X., Liu, M. and Gilson, M. (2001) “BindingDB: A web-accessible molecular
recognition database. Combinatorial Chemistry & High Throughput
Screening”, Combinatorial Chemistry & High Throughput Screening, 4, 719–
725.
187
Chen, X., Ji, Z. L., Zhi, D. G. and Chen, Y. Z. (2002) “CLiBE: a database of
computed ligand binding energy for ligand-receptor complexes”, Computers
and Chemistry, 26, 661–6.
Cheng, T., Zhao, Y., Li, X., Lin, F., Xu, Y., Zhang, X., Li, Y. and Wang, R. (2007)
“Computation of Octanol-Water Partition Coefficients by Guiding an Additive
Model with Knowledge”, Journal of Chemical Information and Modeling, 47,
2140-2148.
Chan, J. C., Cockram, C. S., Buckley, T., Young, K., Kay, R. and Tomlinson, B.
(1995) “Evenoming by Bungarus multicinctus (many-banded krait) in Hong
Kong”, Tropical Medicine Hygeine, 98(6), 457-60.
Chandra, V., Pandav, R., Dodge, H. H., Johnston, J. M., Belle, S. H., Dekosky, S. T.
and Ganguli, M. (2001) “Incidene of Alzheimer's disease in a rural community
in India: The Indo-US study”, Neurology, 57, 985–9.
Chung, J. Y., Pasha, F. A., Cho, S. J., Won, M., Lee, J. J. and Lee, K. (2009)
“Pharmacophore-based 3D-QSAR of HIF-1 Inhibitors”, Archives of
Pharmacal Research, 32(3), 317-32.
Chyung, Y. H., Peng, P. D. and Kay, M. A. (2003) “System for Simultaneous Tissue-
Specific and Disease-Specific Regulation of Therapeutic Gene Expression”,
Human Gene Therapy, 14, 1255–1264.
188
Clarke, J., Bowman, T. and Strikeleather, J. (1996) “Client/Server Architectures”, The
Next Generation Computing Series, 6-21.
Converse, T., Park, J. and Morgan, C. (2008) “PHP5 and MySQL Bible” In Wiley
Edition, “PHP and MySQL”, 231-362.
Conte, L. L., Ailey, B., Hubbard, T. J. P., Brenner, S. E., Murzin, A. G. and Chothia,
C. (2000) “SCOP: a Structural classification of Protein Data Bank”, Nuclic
Acids Research, 1(28), 257-259.
Daly, M., Ardelean, A., Cha, H., Campbell, A. C. and Fautin, D. G. (2004) “A new
species, adamsia obvolva (cnidaria: anthozoa: actiniaria), from the gulf of
Mexico, and a discussion of the taxonomy of carcinoecium-forming sea
anemones”, new taxa paper, bulletin of marine science, 74(2), 385–399.
Daly, J. C. (1981) "Effects of Social Organization and Environmental Diversity on
Determining the Genetic Structure of a Population of the Wild Rabbit,
Oryctolagus cuniculus”, Evolution, 35(4), 689-706.
Denmark, H. A. and Cromroy, H. L. (1888) "Tropical Fowl Mite, Ornithonyssus
bursa (Berlese) (Arachnida: Acari: Macronyssidae)", University of Florida
IFAS Extension, BENY-297, 1-4.
189
Dessailly, B. H., Lensink, M. F., Orengo, C. A. and Wodak, S. J. (2008) “LigAsite–a
database of biologically relevant binding sites in proteins with known apo-
structures”, Nucleic Acids Research, 36, D667–D673.
Deardena, J. and Worth, A. (2007) “In Silico Prediction of Physicochemical
Properties”, JRC Scientific and Technical Reports, 1-73.
Doyle, J. A. (1998) “Phylogeny of vascular plants”, Annual Review of Ecology,
Evolution and Systematics, 29, 567-599.
Elmasriand, R., Shamkant, B. and Navathe (2000) “Fundamentals of Database
Systems”, 3rdEdition, Addison Wesley.
Fan, E., Merritt, E. A., Verlinde, C. L. and Hol W. G. (2000) “AB5 toxins: structures
and inhibitor design”, Current Opinion in Structural Biology, 10, 680– 686.
Feng, Z., Chen, L., Maddula, H., Akcan, O., Oughtred, R., Berman, H. M. and
Westbrook, J. (2004) “Ligand Depot: a data warehouse for ligands bound to
macromolecules”, Bioinformatics, 20, 2153–2155.
Ford, L. S. and Cannatella, D. C. (1993) "The major clades of frogs". Herpetological
Monographs, 7, 94–117.
190
Fujimoto, N., Inoue, K., Hayashi, Y. and Yuasa, H. (2006) “Glycerol uptake in HCT-
15 human colon cancer cell line by Na(+)-dependent carrier-mediated
transport”, Biological & Pharamaceutical Bulletin, 29(1), 150-4.
Garcia, H., Ullman, J. D. and Widom, J. (2004) “Database Systems-The Complete
Book”, Pearson Education.
Gasteiger, E., Jung, E. and Bairoch, A. (2001) “SWISS-PROT: Connecting
Biomolecular Knowledge Via a Protein Database”, Current Issues in
Molecular Biology, 3(3), 47-55.
Gerding, D. N., Johnson, S., Peterson, L. R., Mulligan, M. E. and Silva, J. (1995)
"Clostridium difficile-associated diarrhea and colitis", Infection Control and
Hospital Epidemiology, 16(8), 459-477.
Ghasemi, J. and Saaidpour, S. (2007) “QSPR Prediction of Aqueous Solubility of
Drug-Like Organic Compounds”, Chemical and Pharmaceutical Bulletin,
55(4), 669-674.
Ghosh, B., Mishra, A. and Sengupta, P. (2005) “Is Parkinson's disease a homogeneous
disorder--what is the burden of Parkinson's disease in India”, Journal of
Indian Medical Association, 103(3), 146-150.
191
Goa, Z., Li, H., Zhang, H., Liu, X., Kang, L., Luo, X., Zhu, W., Chen, K., Wang, X.
and Jiang, H. (2008) “PDTD: a web-accessible protein database for drug target
identification”, BMC Bioinformatics, 9(104), 1-7.
Gold, N. D. and Jackson, R. M. (2011) “SitesBase: a database for structure-based
protein–ligand binding site comparisons”, Nucleic Acids Research, 34, D231-
D234.
Goodarzi, M. and Freitas, M. P. (2010) “MIA-QSAR coupled to principal component
analysis-adaptive neuro-fuzzy inference systems (PCA-ANFIS) for the
modeling of the anti-HIV reverse transcriptase activities of TIBO derivatives”,
European Journal of Medicinal Chemistry, 45(4), 1352-8.
Golovin, A., Dimitropoulos, D., Oldfield, T., Rachedi, A. and Henrick, K. (2004)
“MSDsite: A database search and retrieval system for the analysis and viewing
of bound ligands and active sites”, Proteins: Structure, Function and,
Bioinformatics, 58, 190–199.
Grossi, S. M., Lui, J. F., Garcia, J. E. and Meirelles, F. V. (2006) “Genetic diversity in
wild (Sus scrofa scrofa) and domestic (Sus scrofa domestica) pigs and their
hybrids based on polymorphism of a fragment of the D-loop region in the
mitochondrial DNA”, Genetics and Molecular Research, 5 (4), 564-568.
192
Gunther, J., Bergner, A., Hendlich, M. and Klebe, G. (2003) “Utilising structural
knowledge in drug design strategies: applications using Relibase”, Journal of
Molecular Biology, 326, 621–636.
Gupta, R., Deedwania, P. C., Gupta, A., Rastogi, S., Panwar, R. B. and Kothari, K.
(2004) “Prevalence of metabolic syndrome in an Indian urban population”,
International Journal of Cardiology, 97(2), 257-261.
Hazuda, D. J., Felock, P., Witmer, M., Wolfe, A., Stillmock, K., Grobler, J. A.,
Espeseth, A., Gabryelski, L., Schleif, W., Blau, C., Miller, M. D. (2000)
“Inhibitors of strand transfer that prevent integration and inhibit HIV-1
replication in cells”, Science, 287, 646-650.
Hadzivukovic, S. and Emilija, N. R. A. (2005) “Fisher and Modern Statistics”,
International Statistical Institute, 55th Session.
Hansch, C. and Fujita, T. (1964). "A method for the correlation of biological activity
and chemical structure”, Journal of American Chemical Society, 86, 1616-
1626.
Hendlich, M. (1998) “Databases for protein-ligand complexes”, Acta Crystallogr D
Biol Crystallogr, 54, 1178–1182.
Hiendleder, S., Lewalski, H. and Janke, A. (2008) “Complete mitochondrial genomes
of Bos taurus and Bos indicus provide new insights into intraspecies variation,
193
taxonomy and domestication”, Cytogenetic and Genome Research, 120, 150–
156.
Hillman, B. I., Supyani, S., Kondo, H. and Suzuki, N. (2004) “A Reovirus of the
Fungus Cryphonectria parasitica That Is Infectious as Particles and Related to
the Coltivirus Genus of Animal Pathogens”, Journal of Virology, 78(2), 892-
898.
Hoffman, B., Cho, S. J., Zheng, W., Wyrick, S., Nichols, D. E., Mailman, R. B. and
Tropsha, A. (1999) "Quantitative Structure−Activity Relationship Modeling of
Dopamine D1 Antagonists Using Comparative Molecular Field Analysis,
Genetic Algorithms−Partial Least-Squares, and K Nearest Neighbor
Methods", Journal of Medicinal Chemistry, 42 (17), 3217–3226.
Hu, L., Benson, M. L., Smith, R. D., Lerner, M. G., Carlson, H. A. (2005) “Binding
MOAD (Mother Of All Databases)”, Proteins, 60, 333-40.
Hulo, N., Bairoch, A., Bulliard, V., Cerutti, L., Cuche, B., Castro, D. E., Lachaize, C.
and Langendijk-Genevaux, P. S., Sigrist, C. J. A. (2007) “The 20 years of
PROSITE”, Nucleic Acids Research, 36(Database issue), D245-D249.
Hudault, S., Guignot, J. and Servin, A. L. (2001) "Escherichia coli strains colonising
the gastrointestinal tract protect germfree mice against Salmonella
typhimurium infection", Gut, 49 (1), 47–55.
194
Hwass, C. H. and Bruguihre, J. C. (1792) “Conus amadis”, Encyclopidie Mithodique,
1, 689-678.
Imase, K., Takahashi, M., Tanaka, A., Tokunaga, K., Sugano, H., Tanaka, M., Ishida,
H., Kamiya, S. and Takahashi, S. (2008) “Efficacy of Clostridium butyricum
preparation concomitantly with Helicobacter pylori eradication therapy in
relation to changes in the intestinal microbiota”, Microbiology and
Immunology, 52(3), 156-61.
Jagadish, H. V. and Olken, F. (2003) “Database Management for Life Science
Research”, OMICS: A Journal of Integrative Biology, 7(1), 131-137.
Jain, A. K., Ravichandran, V., Singh, R., Mourya, V. and Agrawal, R. K. (2009)
“QSAR study of 2,4-disubstituted phenoxyacetic acid derivatives as a CRTh2
receptor antagonists”, Chemical Papers, 63 (4), 464-470.
Jacobs, G. H., Deegan, J. F. and Neitz, J. (1998) “Photopigment basis for dichromatic
color vision in cows, goats and sheep”, Visual Neuroscience, 15, 581–584.
Javed, S. M. M., Seetharamaraju, M., Rao, K. T., Tampal, F. and Srinivasulu, C.
(2010) “Distribution of Lygosoma guentheri (Peter, 1879) (Reptilia:
Scincidae) in Andhra Pradesh, India”, JoTT Note, 2(4), 837-840.
Ji, Z. L., Chen, X., Zhen, C. J., Yao, L. X., Han, L. Y., Yeo, W. K., Chung, P. C., Puy,
H. S., Tay, Y. T., Muhammad, A. and Chen, Y. Z. (2003) “KDBI: Kinetic
195
Data of Bio-molecular Interactions database”, Nucleic Acids Research, 31,
255–7.
Kant, L. and Krishnan, S. K. (2010) “Information and communication technology in
disease surveillance, India: a case study”, BMC Public Health, 10(1), 1-4.
Kanehisa, M., Araki, M., Goto, S., Hattori, M., Hirakawa, M., Itoh, M., Katayama, T.,
Kawashima, S., Okuda, S., Tokimatsu, T., and Yamanishi, Y. (2008) “KEGG
for linking genomes to life and the environment”, Nucleic Acids Research, 36,
D480-D484.
Keogh, J. (2005) “The Complete Reference J2EE”, Tata McGraw-Hill, New Delhi.
King, H. and Rewers, M. (1993) “Global estimates for prevalence of diabetes mellitus
and impaired glucose tolerance in adults”, Diabetes Care, 16,157-177.
Kitajima, K., Ahmad, S., Selvaraj, S., Kubodera, H., Sunada, S., An, J. and Sarai, A.
(2002) “Development of a Protein-Ligand Interaction Database ProLINT, and
Its Application to QSAR Analysis”, Genome Informatics, 13, 498–499.
Konovalov, D. A., Llewellyn, L. E., Heyden, Y. V. and Coomans, D. (2008) “Robust
Cross-Validation of Linear Regression QSAR Models”, Journal of Chemical
Information and Modeling, 48 (10), 2081–2094.
196
Kuhn, D., Weskamp, N., Schmitt, S., Hllermeier, E. and Klebe, G. (2006) “From the
similarity analysis of protein cavities to the functional classification of protein
families using cavbase”, Journal of Molecular Biology, 359, 1023–1044.
Kumaran, D., Eswaramoorthy, S., Furey, W., Navaza, J., Sax, M. and Swaminathan,
S. (2009) “Domain organization in Clostridium botulinum neurotoxins type E
is unique: its implication in faster translocation”, Journal of Molecular
Biology, 386(1), 233-45.
Kumar, M. D. S., Bava, K. A., Gromiha, M. M., Prabakaran, P., Kitajima, K.,
Uedaira, H., and Sarai, A. (2006) “Protherm and pronit: thermodynamic
databases for proteins and protein-nucleic acid interactions“, Nucleic Acids
Research, 34, D204–D206.
Laskowski, R. A. (2009) “PDBsum new things”, Nucleic Acids Research, 37, D355-
D359.
Leakey, R. E. F., Butzer, K. W. and Day, M. H. (1969) "Early Homo sapiens remains
from the Omo River region of Southwest Ethiopia”, Nature, 222, 1132-1138.
Lebeda, F. J. (2004) “BotDB: A database resource for the clostridial neurotoxins”,
Movement Disorders, 8, S35-41.
197
Liang, M. H. and Shadick, N. (1997) “Feasibility and Utility of Adding Disease-
Specific outcome Measures to Administrative Databases To Improve Disease
Management”, Quality Measurement and Improvement, 127(8), 739-742.
Lieberman, D. E., McBratney, B. M. and Krovitz, G. (2002) “The evolution and
development of cranial form in homosapiens”, Proceedings of National
Academy of Science, 99(3), 1134-9.
Liu, A., Gunag, H., Zhu, L. and Du, G. (2007) “3D-QSAR Analysis of a Newtype of
Acetylcholinesterase inhibitors”, Science China Life Sciences, 50, 726-730.
Lopez, G., Valencia, A., and Tress, M. (2007) “FireDB–a database of functionally
important residues from proteins of known structure”, Nucleic Acids Research,
35, D219–D223.
Luco, J. M and Ferretti, F. H. (1997) “QSAR Based on Multiple Linear Regression
and PLS Methods for the Anti-HIV Activity of a Large Group of HEPT
Derivatives”, Journal of Chemical Information and Computer Science, 37 (2),
392–401.
Marinus, J., Stiggelbout, A. M. and Hilten, J. J. V. (2004) "Assessment of Autonomic
Dysfunction in Parkinson’s Disease: The SCOPA-AUT", Movement
Disorders, 19 (11), 1306-1312.
198
Maccari, L., Magnani, M., Strappaghetti, G., Corelli, F., Botta, M. and Manetti, F.
(2006) “A genetic-function-approximation-based QSAR model for the affinity
of arylpiperazines toward alpha1 adrenoceptors”, Journal of Chemical
Information and Modeling, 46(3), 1466-78.
Malik, A. and Ahmad, S. (2007) “Sequence and structural features of a neural
network”, BMC Structural Biology, 7, 1–14.
Maqungo, M., Kaur, M., Kwofie, S. K., Radovanovic, A., Schaefer, U., Schmeier, S.,
Oppon, E., Christoffels, A. and Bajic, V. B. (2011) “DDPC: Dragon Database
of Genes associated with Prostate Cancer”, Nucleic Acids Research, 39,
D980–D985.
McKenna, M.C. and Bell, S.K. (1997) “Classification of Mammals above the Species
Level”, Columbia University Press, New York, i-xii, 1-631.
Melo, E. B. D. and Ferreira, M. M. C. (2009) “Multivariate QSAR study of 4,5-
dihydroxypyrimidine carboxamides as HIV-1 integrase inhibitors”, European
Journal of Medicinal Chemistry, 44, 3577–3583.
Middha, S. K, Mittal, Y., Usha, T., Kumar, D., Srinivasan, R., Vashisth, L.,
Bhattacahrgae, B. and Nagaveni, M. B. (2009) “Phyto-mellitus: A phyto-
chemical database for diabetes”, Bioinformation, 4(2), 78-79.
199
Michalsky, E., Dunkel, M., Goede, A. and Preissner, R. (2005) “SuperLigands – a
database of ligand structures derived from the Protein Data Bank”, BMC
Bioinformatics, 6, 122.
Mitra, S. and Mitra, M. (2003) "An automated data extraction system from 12 lead
ECG images", Computer Methods and Programs in Biomedicine, 71(1), 33-
38.
Mohandass, J., Ravichandran, S., Srilakshmi, K., Rajadurai, C. P., Sanmugasamy, S.,
Kumar, G. R. (2010) “BCDB - A database for breast cancer research and
information”, Bioinformation, 5(1), 1-3.
Mohan, V., Sandeep, S., Deepa, R., Shah, B. and Varghese, C. (2007) “Epidemiology
of type 2 diabetes: Inidan scenario”, Indian Journal of Medical Research, 125,
217-230.
Moore, R. T. (1980) "Taxonomic proposals for the classification of marine yeasts and
other yeast-like fungi including the smuts”, Botanica Marine, 23, 361–73.
Nakamura, S., Okado, I., Abe, T. and Nishida, S. (1979) “Taxonomy of Clostridium
tetani and Related Species”, Journal of General Microbiology, 113(1), 29-35.
Nagao, K., Mori, T., Sawada, C., Sasakawa, C. and Kanezaki, Y. (2007) “Detection of
the Tetanus Toxin Gene by Polymerase Chain Reaction: A Case Study”,
Japanese Journal of Infectious Diseases, 60, 149-150.
200
Noguchi, T. and Arakawa, O. (2008) “Tetrodotoxin – Distribution and Accumulation
in Aquatic Organisms, and Cases of Human Intoxication”. Marine Drugs, 6,
220-242.
Novotny, V., Basset, Y., Miller, S. E., Weiblen, G. D., Bremer, B., Cizek, L. and
Drozd, P. (2002). "Low host specificity of herbivorous insects in a tropical
forest", Nature, 416 (6883), 841–844.
Oftedal, O.T. (2002) "The mammary gland and its origin during synapsid evolution".
Journal of Mammary Gland Biology and Neoplasia, 7 (3), 225–252.
Olson, L. E., Sargis, E. J., Martic, C. R. D. (2005) “Intraordinal phylogenetics of
treeshrews (Mammalia: Scandentia) based on evidence from the mitochondrial
12S rRNA gene”, Molecular Phylogenetics and Evolution, 35, 656–673.
Okuno, Y., Tamon, A., Yabuuchi, H., Niijima, S., Minowa, Y., Tonomura, K.,
Kunimoto, R. and Feng, C. (2008) “GLIDA: GPCR—ligand database for
chemical genomics drug discovery—database and tools update”, Nuclic Acids
Research, 36(1), D907-D912.
Page, D. (2008) “Systematic Literature Searching and the Bibliographic Database
Haystack”, Electronic Journal of Business Research Methods, 6(2), 171-180.
201
Pal, H. K., Dinda, A. K., Roy, S. and Banerji, A. K. (1989) “Acute effect of
andhydrous glycerol on peripheral nerve: an experimental study”, British
Journal of Neurosurgery, 3(4), 463-9.
Papa, E., Dearden, J. C. and Gramatica, P. (2007) “Linear QSAR regression models
for the prediction of bioconcentration factors by physicochemical properties
and structural theoretical molecular descriptors”, Chemosphere, 67, 351–358.
Pasha, F. A., Nam, K. D. and Cho, S. J. (2007a) “CoMFA based quantitative structure
toxicity relationship of azo dyes”, Molecular and Cellular Toxicology, 3, 145-
149.
Pasha, F. A., Srivastava, H. K., Srivastava, A. and Singh, P. P. (2007b) “QSTR study
of small organic molecules against tetrahymena pyriformis”, QSAR &
Combinatorial Science, 26, 69-84.
Pasha, F. A., Neaz, M. M., Cho, S. J. and Kang, S. B. (2007c) “Quantitative structure
activity relationship (QSAR) study of estrogen derivatives based on
descriptors of energy and softness”, Chemical Biology and Drug Design., 70,
520-529.
Pasha, F. A., Chung, H. W., Cho, S. J. and Kang, S. B. (2008) “3D-quantitative
structure activity analysis and quantum chemical analysis of pyrido-di-
indoles”, International Journal of Quantum Chemistry, 108, 391-400.
202
Panegyres, P. K., Graham, S. J., Williams, B. K., Higgins, B. M. and Morris, J. G.
(1991) “Sublingual apomorphine solution in Parkinson's disease”, The
Medical Journal of Australia, 155(6), 371-4.
Pelkonen, R., Esko, A., Nikkila and Ketti, M. (1967) “Metabolism of glycerol in
diabetes mellitus”, Diabetologia, 3(1), 1-8.
Pietrokovski, S., Henikoff, J. and Henikoff, S. (1995) “The Blocks Database—A
System for Protein Classification”, Nuclic Acids Research, 24(1), 197-100.
Prabakaran, P., An, J., Gromiha, M. M., Selvaraj, S., Uedaira, H., Kono, H., and
Sarai, A. (2001) “Thermodynamic database for protein-nucleic acid
interactions (ProNIT)”, Bioinformatics, 17, 1027–1034.
Puvanendrampillai, D. and Mitchell, J.B.O. (2003) “Protein ligand database (PLD):
additional understanding of the nature and specificity of protein–ligand
complexes”, Bioinformatics, 19, 1856–1857.
Querfurth, H. W. and LaFerla, F.M. (2010) “Alzheimer's disease”, The New England
Journal of Medicine, 362(4), 329-44.
Raina, S., Razdan, S., Pandita, K. K. and Raina, S. (2008) “Prevalence of dementia
among Kashmiri migrants”, Annals of Indian Academy of Neurology, 11(2),
106–108.
203
Ramakrishnan, R. and Gehrke, J. G. (2007) “Database Management Systems”, 3rd
Edition, McGraw-Hill, Inc. New York, NY, USA.
Rao, T. S. S. and Shaji, K.S. (2007) “Demographic aging: Implications for mental
health”, Indian Journal of Psychiatry, 49, 78–80.
Ray, S., De, K., Sengupta, C. and Roy, K. (2008) "QSAR study of lipid peroxidation-
inhibition potential of some phenolic antioxidants", Indian Journal of
Biochemistry & Biophysics, 45, 198-205.
Recanatini, M., Cavalli, A. and Hansch, C. A. (1997) “Comparative QSAR analysis
of Acetylcholinesterase Inhibitors currently studied for the Treatment of
Alzheimer’s disease”, Chemico-Bioligal Interaction, 105, 199-228.
Reddy, A. S., Amarnath, H. S., Bapi, R. S., Sastry, G. M. and Sastry, G. N. (2008)
“Protein ligand interaction database (PLID)”, Computational Biology and
Chemistry, 32, 387–390.
Roche, O., Kiyama, R. and Brooks, C. L. (2001) “Ligand–protein database: linking
protein–ligand complex structures to binding data”, Journal of Medicinal
Chemistry, 44, 3592–3598.
Sage, R., Atchley, W. and Capanna, E. (1993) “House mice as models in systematic
biology”, Systematic Biology, 42(4), 523-561.
204
Saha, S. and Raghava, G. P. S (2007) “Prediction of neurotoxins based on their
function and source”, In Silico Biology, 7, 1-14.
Schmitt, S., Kuhn, D. and Klebe, G. (2002) “A new method to detect related function
among proteins independent of sequence and fold homology”, Journal of
Molecular Biology, 323, 387–406.
Schmidt, C. J., Romanov, M., Ryder, O., Magrini, V., Hickenbotham, M., Glasscock,
J., McGrath, S., Mardis, E. and Stein, L. D. (2008) “Gallus GBrowse: a
unified genomic database for the chicken”, Nucleic Acids Research,
36(Database issue), D719–D723.
Schrodinger. (2008) Qikprop, Version 3.1 LLC, New York, NY.
Shen, L. L., Liu, G. X. and Tang, Y. (2007) “Molecular docking & 3D-QSAR studies
of 2-substituted 1-indanone derivatives as Acetylcholinesterase inhibitors”,
Acta Pharmacologica Sinica, 28, 2053-2063.
Shin, J. and Cho, D. (2005) “PDB--Ligand: a ligand database based on PDB for the
automated and customized classification of ligand-binding structures”, Nucleic
Acids Research, 33( Database Issue), D238-D241.
Shetty, K. T. (2007) “Metabolomics: impact on diagnosis and monitoring of
‘inborn’/’acquired’ metabolic disorders”, Indian Journal of Clinical
Biochemistry, 22(2), 3-5.
205
Siew, J. P. Y., Khan, A. M., Tan, P. T. J., Koh, J. L. Y., Seah, S. H., Koo, C. Y., Chai,
S. C., Arumugam, A., Brusic, V. and Jeyaseelan, K. (2004) “Systematic
analysis of snake neurotoxins functional classification using a data
warehousing approach”, Bioinformatics, 20(18), 3466–3480.
Solomon, K. A, Sundararajan, S. and Abirami, V. (2009) “QSAR Studies on N-aryl
Derivative Activity Towards Alzheimer’s Disease“, Molecules, 14, 1448-
1455.
Soga, S., Shirai, H., Kobori, M. and Hirayama, N. (2007) “Use of amino acid
composition to predict ligand-binding sites”, Chemical Informaton Model, 47,
400–406.
Sowers, K.R., Baron, S.F. and Ferry, J.G. (1984) “Methanosarcina acetivorans sp.
nov., an acetotrophic methane-producing bacerium isolated from marine
sediments”, Applied and Environmental Microbiology, 47, 971-978.
Tan, S. K. and Clements, R. (2008) “Taxonomy and Distribution of the Neritidae
(Mollusca: Gastropoda) in Singapore”, Zoological Studies, 47(4), 481-494.
Tang, S., Zhang, Z., Kavitha, G. and Tan, S. K. (2008) “MDPD: an integrated genetic
information resource for Parkinson's disease”, Nuclic Acids Research, 37(1),
D858-D862.
206
Takiar, R., Nadayil, D. and Nandakumar, A. (2010) “Projections of number of cancer
cases in India (2010-2020) by cancer groups”, Asian Pacific Journal of
Cancer Prevention, 11(4), 1045-9.
Teasdale, J. R. and Daughtry, C. S. T. (1993) "Weed Suppression by Live and
Desiccated Hairy Vetch (Vicia villosa)", Weed Science, 41, 207-212.
Tsukamoto, K., Mukamoto, M., Kohda, T., Ihara, H., Wang, X., Maegawa, T.,
Nakamura, S., Karasawa, T. and Kozaki, S. (2002) “Characterization of
Clostridium butyricum neurotoxin associated with food-borne botulism”,
Microbial Pathogenesis, 33, 177-184.
Verma, S. S., Bharadwaj, H., Zachariah, T., Kishnani, S. and Bhatia, M. R. (1983)
"Prediction of body volume by a stepwise linear regression technique",
European Journal of Applied Physiology and Occupational Physiology, 1,
126-130.
Wang, R., Fang, X., Lu, Y. and Wang, S. (2004) “The PDBbind database: collection
of binding affinities for protein-ligand complexes with known three-
dimensional structures”, Journal of Medicinal Chemistry, 47, 2977–80.
Wang, R., Lu, Y., Fang, X. and Wang, S. (2004a) “An extensive test of 14 scoring
functions using the PDBbind refined set of 800 protein-ligand complexes”,
Journal of Chemical Information and Computer Sciences, 44, 2114–25.
207
Wang, R., Fang, X., Lu, Y., Yang, C. and Wang, S. (2005) “The PDBbind database:
methodologies and updates”, Medicinal Chemistry, 48, 4111–4119.
Wang, Y., Kenneth, J., Addess, Chen, J., Geer, L. Y., He, J., He, S., Lu, S., Madej, T.,
Marchler-Bauer, A., Paul, A., Thiessen, Zhang, N. and Bryant, S. H. (2007)
“MMDB: annotating protein sequences with Entrez’s 3D-structuredata base”,
Nucleic Acids Research, 35 (Database issue), D298-300.
Westbrook, J., Ito, N., Nakamura, H., Henrick, K. and Berman, H. M. (2005)
“PDBML: the representation of archival macromolecular structure data in
XML”, Bioinformatics, 21(7), 988-992.
Weir, Jason, T. and Schluter, D. (2007) "The Latitudinal Gradient in Recent
Speciation and Extinction Rates of Birds and Mammals". Science, 315 (5818),
1574–76.
Wishart, S. D., Knox, C., Guo, A. C., Shrivastava, S., Hassanali, M., Stothard, P.,
Chang, Z. and Woolsey, J. (2005) “DrugBank: a comprehensive resource for
in silico drug discovery and exploration”, Nuclic Acids Research, 34(1),
D668-D672.
White, C. (2006) “A roadmap to enterprise data integration”, Information integration
solutions, 1-32.
Whittaker and Robert, H. (1959) “On the broad classification of organisms”,
Quarterly Review Of Biology, 34, 210-66.
208
Wu, C. H., Huang, H., Arminski, L., Castro-Alvear, J., Chen, Y., Hu, Z. Z., Ledley,
R. S., Lewis, K. C., Mewes, H., Orcutt, B. C., Suzek, B. E., Tsugita, A.,
Vinayaka, C. R., Yeh, L. S., Zhang, J., Barker, W. C. (2002) “The Protein
Information Resource: an integrated public resource of functional annotation
of proteins”, Nucleic Acids Research, 30, 35-37.
Xu, M., Kao, M. C., Nunez-Iglesias, J., Nevins, J. R., West, M. and Zhou, X. J.
(2008) “An integrative approach to characterize disease-specific pathways and
their coordination: a case study in cancer”, BMC Genomics, 9, 1-12.
Yasuda, Y. (2009) “A novel method improving motor disturbance in Parkinson
disease: application of glycerin poultice to the flexor digitorum profundus in
the middle phalanx of the little finger”, NeuroRehabilitation, 24(3), 219-23.
Yang, B., Zhao, D. and Verkman, A. S. (2006) “Evidence against functionally
significant aquaporin expression in mitochondria”, The Journal of Biological
Chemistry, 281(24), 16202-6.
Jae, Y. C., Pasha F. A., Joo, C. S., Misun, W., Joon, L. J. and Kyeong, L. (2009)
“Pharmacophore-based 3D-QSAR of HIF-1 Inhibitors”, Archives of
Pharmacal Research, 32(3), 317-32.
Zhao, J., Liu, H., Lin, H., Huang, C., Fang, H., Chen, S., Ho, Y., Tsai, W. and Chen,
W. (2007) “Chemical Chaperone and Inhibitor Discovery: Potential
209
Treatments for Protein Conformational Diseases”, Perspectives in Medicinal
Chemistry, 1, 39–48.
Zhang, N., Castlebury, L. A., Miller, A. N., Huhndorf, S. M., Schoch, C. L., Seifert,
K. A., Rossman, A. Y., Rogers, J. D., Kohlmeyer, J. and Sung, G. (2006) “An
overview of the systematics of the Sordariomycetes based on a four-gene
phylogeny”, Mycologia, 98(6), 1076-1087.
Web Site References
[1] www.drmohansdiabetes.com
[2] www.breastcancerdatabase.org
[3] http://www.umass.edu/microbio/chime/getchime.htm
[4] www.chemaxon.com
[5] www.acdlabs.com
[6] www.pubchem.org
[7] www.schrodinger.com
[8] www. megaputer.com
[9] www.endnote.com
[10] http://www.ncbi.nlm.nih.gov/Genbank
[11] http://www.ddbj.nig.acjp/
[12] http://www.ebi.ac.uk/embl/index.html
[13] http://www.ncbi.nlm.nih.gov/Entrez/Genome/org.html
[14] http://www.ebi.ac.uk/genomes/
[15] http://www.informaticsjax.org/
Top Related