de jure de facto grass-roots
groups standard
organizations
NanotechnologyWorkingGroup
Formats Terminologies Guidelines
Community-driven efforts, just few examples
Content standards: domain-level descriptors essential for
interpretation, verification and reproducibility of datasets
Formats Terminologies Guidelines
212
113
500+
source sourcesource
miame!MIRIAM!
MIQAS!MIX!MIGEN!
ARRIVE!MIAPE!
MIASE!
MIQE!
MISFISHIE….!
REMARK!
CONSORT!
SRAxml!
SOFT! FASTA!DICOM!
MzML!SBRML!
SEDML…!
GELML!
ISA!
CML!
MITAB!
AAO!CHEBI!OBI!
PATO! ENVO!MOD!
BTO!IDO…!
TEDDY!
PRO!XAO!
DO
VO!
Content standards – in numbers
Datapoliciesbyfunders,journalsandotherorganizaLons
Database,toolsandservices
Contentstandards
Complex and evolving landscape
Formats Terminologies Guidelines
Aweb-based,curatedandsearchableportalthatmonitorsthedevelopmentandevolu2onofstandards,theiruseindatabasesandtheadopLonofbothindatapolicies,toinformandeducatetheusercommunity
Readyforuse,implementaLon,orrecommendaLon
Indevelopment
Statusuncertain
Deprecatedassubsumedorsuperseded
Manuallycuratedandverifiedbythecommunitybehindeachresource
Indicators to describe ‘status’
§ Wehavecurated586ofthe674standardsrecords(87%)• 155areclaimedbytherelevant,andsoconfirmedtobe
‘acLve’(23%);64standardsaredeprecated,8indevelopment,19uncertain
• 55standardsweregeneratedviaaworldwideconsorLum/organisaLon/governingbody;341involvedtheUSAeitheraloneorinpartnershipwithanothercountry;138theUK;53EU;8China
• themostadoptedstandardisFASTA,implementedin247databases
• 309(46%)areimplementedin1ormoredatabaseso 151(22%)implementedin1database;64(9%)
implementedin2databases;157(23%)implementedin2ormoredatabases
Preliminary analysis – work in progress
Standarddevelopinggroups:JournalPublishers:
Registry
Cross-links/Dataexchange:
Some user communiEes and collaborators SocieLesandorganisaLons:
InsLtuLonalRDMservices:
Projects/programmes:
bsg-000174
biosharing:ReporLngGuideline
bsg-000161
MINSEQE
MIMARKS
sampleinformaLon
sampleidenLfier
taxonomyidenLfier
sequenceread
geolocaLon
High-levelinforma0onaboutthemetadatastandards
Representa0onsofthestandardselements
Templateelementsfor
el-000001
el-000002
el-000003
provenance:MINSEQE
provenance:MINSEQE
andMIMARKS
provenance:MIMARKS
• Servemachine-readablecontentmetadatastandards,providingprovenancefortheirelements• InformthecreaLonofmetadatatemplates,renderingstandardsinvisibletotheresearchers
From standards to CDEs-like, to annotaEon templates
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