Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry:...

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Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA

Transcript of Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry:...

Page 1: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Welcome to 3.091Lecture 32

December 2, 2009

Biochemistry: Lipids, Nucleic Acids, & DNA

Page 2: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

3

from Silk Stockings (1957)Cyd Charisse as Ninotchka YoschenkoFred Astaire as Steve Canfield

Film still image of Cyd Charisse removed due to copyright restrictions.

Page 3: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

tertiary structure of proteins

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Photo courtesy of Adam_d on Flickr.

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Waterasplasticizer

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Palmitic acid

- O - bridge esterUnderlying image © source unknown. All rights reserved. This content is excluded from our Creative Commons license. For more information, see http://ocw.mit.edu/fairuse.

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O –

phospholipid

phosphodiester linkage

Page 9: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

phospholipid

Page 10: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

OCH2CH2NH3+

phosphatidylethanolamine

phosphatide

Page 11: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

OCH2CH2NH3+

phosphatidylethanolamine

Page 12: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

OCH2CH2NH3+

phosphatidylethanolamine

Page 13: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Image removed due to copyright restrictions. See diagram of lipid bilayer, Fig. 19.1 in Bruice, P. Essential Organic Chemistry. 2nd edition. Pearson/Prentice Hall, 2010.

Page 14: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

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Page 15: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Nucleic Acids 02

sugars found in nucleic acids

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amines found in nucleic acids

Image: public domain

Page 17: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

5' end

3' end

Phosphate

Phosphate

Phosphate

Base

Base

Base

sugar

sugar

sugar

O

Base

Base

P

O

O

CH2

O_

P

O

O

CH2

O_

O

O

3' Position

5' Position

Generalized Structure of Nucleic Acid

O

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N H

H

H

H

O H

H

N

NHCH3

H

O

N NN

NN

NNN

NN

Backbone

Backbone

Backbone

Backbone

Cytosine Guanine

Hydrogen bond

Hydrogen bond

Thymine Adenine

O N

NO

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Nucleic Acids 07

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Page 21: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

P

P

P

P

P

T

T

T

A

A

A

C

C

C

G

G

G

P

P

P

P

P

COH

COH

5'3'

5'3'

3.4oA

Hydrogen bonds

5'

3' 5'

3'

Sugar - Phosphate Backbone in DNA

O

O

O

O

O

O

O

O

O

O

O

O

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Page 22: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

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Page 23: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

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Page 25: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

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Page 26: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Oswald Avery

nucleic acids store and transmit genetic information (1944)

Oswald Avery

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Erwin Chargaff

Chargaff’s Rules (1949):

[A] = [T]

[C] = [G]

[A] + [G] = [C] + [T]

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Page 28: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Species Adenine Thymine Guanine Cytosine

Homo sapiens (human)

Drosophila melanogaster (fruit fly)

Zea mays (corn)

Escherichia coli (bacterium)

Bacillus subtilis (bacterium)

Neurospora crassa (mold)

31.0

27.3

25.6

23.0

24.6

28.4

31.5

27.6

25.3

23.3

24.3

29.0

19.1

22.5

24.5

27.1

25.5

21.0

18.4

22.5

24.6

26.6

25.6

21.6

DNA Base Compositions for Various Species

Note that the percentages of adenine and thymine, and of cytosine and guanine, are consistently similar.

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Page 29: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Rosalind FranklinPattern No. 51

May, 1952

Reprinted by permission from Macmillan PublishersLtd: Nature. Source: Franklin, R., and R. G. Gosling."Molecular Configuration in Sodium Thymonucleate."Nature 171 (1953): 740-741. (c) 1953.

Page 30: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Reprinted by permission from Macmillan PublishersLtd: Nature. Source: Franklin, R., and R. G. Gosling."Molecular Configuration in Sodium Thymonucleate."Nature 171 (1953): 740-741. (c) 1953.

Page 31: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Rosalind FranklinPattern No. 51

May, 1952

Reprinted by permission from Macmillan PublishersLtd: Nature. Source: Franklin, R., and R. G. Gosling."Molecular Configuration in Sodium Thymonucleate."Nature 171 (1953): 740-741. (c) 1953.

Page 32: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Book cover image removed due to copyright restrictions. See Judson, Horace Freeland. The Eighth Day of Creation: Makers of the Revolution in Biology. 25th anniversary edition. Woodbury, NY: Cold Spring Harbor Laboratory Press, 1996. ISBN: 9780879694784.

Page 33: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

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Page 34: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Image removed due to copyright restrictions. Full scan of p. 737 from Watson and Crick. "Molecular Structure of Nucleic Acids." Nature 171 (1953): 737-738. See http://www.nature.com/nature/dna50/watsoncrick.pdf.

Page 35: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Reprinted by permission from Macmillan Publishers Ltd: Nature. Source: Watson, J. D., and F. H. C. Crick."Molecular Structure of Nucleic Acids." Nature 171, no. 4356 (1953): 737-738. (c) 1953.

Page 36: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Reprinted by permission from Macmillan Publishers Ltd: Nature. Source: Watson, J. D., and F. H. C. Crick."Molecular Structure of Nucleic Acids." Nature 171, no. 4356 (1953): 737-738. (c) 1953.

Page 37: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Image removed due to copyright restrictions. Full scan of p. 738 from Watson and Crick. "Molecular Structure of Nucleic Acids." Nature 171 (1953): 737-738. See http://www.nature.com/nature/dna50/watsoncrick.pdf.

Page 38: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Reprinted by permission from Macmillan Publishers Ltd: Nature. Source: Watson, J. D., and F. H. C. Crick."Molecular Structure of Nucleic Acids." Nature 171, no. 4356 (1953): 737-738. (c) 1953.

Page 39: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko
Page 40: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Reprinted by permission from Macmillan Publishers Ltd: Nature. Source: Watson, J. D., and F. H. C. Crick."Molecular Structure of Nucleic Acids." Nature 171, no. 4356 (1953): 737-738. (c) 1953.

Page 41: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

WilkinsWatson

Crick King

Stockholm, December 10, 1962

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Page 42: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Book cover image removed due to copyright restrictions.See Maddox, Brenda. Rosalind Franklin: The Dark Lady of DNA.New York, NY: HarperCollins, 2002. ISBN: 9780060184070.

Page 43: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

Book cover image removed due to copyright restrictions.See Watson, James D. The Double Helix: A Personal Account of the Discovery of the Structure of DNA. New York, NY: Touchstone/Simon & Schuster, 2001 (original publication 1968). ISBN: 9780743216302.

Page 44: Welcome to 3 - MIT OpenCourseWare...Welcome to 3.091 Lecture 32 December 2, 2009 Biochemistry: Lipids, Nucleic Acids, & DNA 3 from Silk Stockings (1957) Cyd Charisse as Ninotchka Yoschenko

music:“The Twist” Hank Ballard

image:Rosalind Franklin on vacation in France

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3.091SC Introduction to Solid State ChemistryFall 2009

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