· Web viewAT5G57090-AtPIN2...

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732 Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online. YUCCA genes AT1G04180-AtYUC9 ------------------------------------------------------------ AT1G04610-AtYUC3 ------------------------------------------------------------ AT1G21430-AtYUC11 ------------------------------------------------------------ AT1G48910-AtYUC10 ------------------------------------------------------------ AT2G33230-AtYUC7 ------------------------------------------------------------ AT4G13260-AtYUC2 ------------------------------------------------------------ AT4G28720-AtYUC8 ------------------------------------------------------------ AT4G32540 ------------------------------------------------------------ AT5G11320-AtYUC4 ------------------------------------------------------------ AT5G25620-AtYUC6 ------------------------------------------------------------ AT5G43890-AtYUC5 ------------------------------------------------------------ gene30882 ------------------------------------------------------------ gene08377 ------------------------------------------------------------ gene32686 MAFNADTKALIADSRALVVNFRALIINFKALVIDTKLVSSASIHTAALDESFLAIGSVET gene01005 ------------------------------------------------------------ gene27796 ------------------------------------------------------------ gene08779 ------------------------------------------------------------ gene11728 ------------------------------------------------------------ gene00528 ------------------------------------------------------------ gene06886 ------------------------------------------------------------ OS01G12490 ------------------------------------------------------------ OS01G16714 ------------------------------------------------------------ OS01G16750 ------------------------------------------------------------ OS01G25470 ------------------------------------------------------------ OS01G45760 ------------------------------------------------------------ OS01G53200 ------------------------------------------------------------ OS02G17230 ------------------------------------------------------------ OS03G06654 ------------------------------------------------------------ OS04G03980 ------------------------------------------------------------ OS05G45240 ------------------------------------------------------------ OS07G25540 ------------------------------------------------------------ OS11G10140 ------------------------------------------------------------ OS11G10170 ------------------------------------------------------------ OS12G08780 ------------------------------------------------------------ OS12G32750 ------------------------------------------------------------ AT1G04180-AtYUC9 ------------------------------------------------------------ AT1G04610-AtYUC3 ------------------------------------------------------------ AT1G21430-AtYUC11 ------------------------------------------------------------ AT1G48910-AtYUC10 ------------------------------------------------------------ AT2G33230-AtYUC7 ------------------------------------------------------------ AT4G13260-AtYUC2 ------------------------------------------------------------ AT4G28720-AtYUC8 ------------------------------------------------------------ AT4G32540 ------------------------------------------------------------ AT5G11320-AtYUC4 ------------------------------------------------------------ AT5G25620-AtYUC6 ------------------------------------------------------------ AT5G43890-AtYUC5 ------------------------------------------------------------ gene30882 ------------------------------------------------------------ gene08377 ------------------------------------------------------------ gene32686 ALCPPDLKKATRWRLSGHPFVEATTKDLISTGEGTWRALAGLNLMLTRARSKVLVPPKSM gene01005 ------------------------------------------------------------ gene27796 ------------------------------------------------------------ gene08779 ------------------------------------------------------------ gene11728 ------------------------------------------------------------ gene00528 ------------------------------------------------------------ gene06886 ------------------------------------------------------------ OS01G12490 ------------------------------------------------------------ OS01G16714 ------------------------------------------------------------ OS01G16750 ------------------------------------------------------------ OS01G25470 ------------------------------------------------------------ OS01G45760 ------------------------------------------------------------ OS01G53200 ------------------------------------------------------------ OS02G17230 ------------------------------------------------------------ OS03G06654 ------------------------------------------------------------ OS04G03980 ------------------------------------------------------------ OS05G45240 ------------------------------------------------------------ OS07G25540 ------------------------------------------------------------ OS11G10140 ------------------------------------------------------------ OS11G10170 ------------------------------------------------------------ OS12G08780 ------------------------------------------------------------

Transcript of · Web viewAT5G57090-AtPIN2...

Page 1: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

YUCCA genes AT1G04180-AtYUC9 ------------------------------------------------------------

AT1G04610-AtYUC3 ------------------------------------------------------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------------------------------------------AT4G13260-AtYUC2 ------------------------------------------------------------AT4G28720-AtYUC8 ------------------------------------------------------------AT4G32540 ------------------------------------------------------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 ------------------------------------------------------------AT5G43890-AtYUC5 ------------------------------------------------------------gene30882 ------------------------------------------------------------gene08377 ------------------------------------------------------------gene32686 MAFNADTKALIADSRALVVNFRALIINFKALVIDTKLVSSASIHTAALDESFLAIGSVETgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 ------------------------------------------------------------gene11728 ------------------------------------------------------------gene00528 ------------------------------------------------------------gene06886 ------------------------------------------------------------OS01G12490 ------------------------------------------------------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 ------------------------------------------------------------OS03G06654 ------------------------------------------------------------OS04G03980 ------------------------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ------------------------------------------------------------

AT1G04180-AtYUC9 ------------------------------------------------------------AT1G04610-AtYUC3 ------------------------------------------------------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------------------------------------------AT4G13260-AtYUC2 ------------------------------------------------------------AT4G28720-AtYUC8 ------------------------------------------------------------AT4G32540 ------------------------------------------------------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 ------------------------------------------------------------AT5G43890-AtYUC5 ------------------------------------------------------------gene30882 ------------------------------------------------------------gene08377 ------------------------------------------------------------gene32686 ALCPPDLKKATRWRLSGHPFVEATTKDLISTGEGTWRALAGLNLMLTRARSKVLVPPKSMgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 ------------------------------------------------------------gene11728 ------------------------------------------------------------gene00528 ------------------------------------------------------------gene06886 ------------------------------------------------------------OS01G12490 ------------------------------------------------------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 ------------------------------------------------------------OS03G06654 ------------------------------------------------------------OS04G03980 ------------------------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ------------------------------------------------------------

AT1G04180-AtYUC9 ------------------------------------------------------------AT1G04610-AtYUC3 ------------------------------------------------------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------------------------------------------AT4G13260-AtYUC2 ------------------------------------------------------------AT4G28720-AtYUC8 ------------------------------------------------------------AT4G32540 ------------------------------------------------------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 ------------------------------------------------------------AT5G43890-AtYUC5 ------------------------------------------------------------gene30882 ------------------------------------------------------------gene08377 ------------------------------------------------------------gene32686 VVANICQIPSHVWVWAQVLGSRFRLKFKKVGPNTPPSPDPKGKIKGESSYSLLLPAVYPRgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 ------------------------------------------------------------

Page 2: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene11728 ------------------------------------------------------------gene00528 ------------------------------------------------------------gene06886 ------------------------------------------------------------OS01G12490 ------------------------------------------------------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 ------------------------------------------------------------OS03G06654 ------------------------------------------------------------OS04G03980 ------------------------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ------------------------------------------------------------

AT1G04180-AtYUC9 ------------------------------------------------------------AT1G04610-AtYUC3 ------------------------------------------------------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------------------------------------------AT4G13260-AtYUC2 ------------------------------------------------------------AT4G28720-AtYUC8 ------------------------------------------------------------AT4G32540 ------------------------------------------------------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 ------------------------------------------------------------AT5G43890-AtYUC5 ------------------------------------------------------------gene30882 ------------------------------------------------------------gene08377 ------------------------------------------------------------gene32686 VSPFESLEQHRPQLWFLIYEPLDLTNLSMSILDWVTAPRLFGDEITSKQLIPKLLPLLFSgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 ------------------------------------------------------------gene11728 ------------------------------------------------------------gene00528 ------------------------------------------------------------gene06886 ------------------------------------------------------------OS01G12490 ------------------------------------------------------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 ------------------------------------------------------------OS03G06654 ------------------------------------------------------------OS04G03980 ------------------------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ------------------------------------------------------------

AT1G04180-AtYUC9 ------------------------------------------------------------AT1G04610-AtYUC3 ------------------------------------------------------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------------------------------------------AT4G13260-AtYUC2 ------------------------------------------------------------AT4G28720-AtYUC8 ------------------------------------------------------------AT4G32540 ------------------------------------------------------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 ------------------------------------------------------------AT5G43890-AtYUC5 ------------------------------------------------------------gene30882 ------------------------------------------------------------gene08377 ------------------------------------------------------------gene32686 EMRGVSHRLLPQVAPRRRKTSVSEEAFHGFGPFGCWMVLVLVAIHAPILAYFNSGSVDGVgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 ------------------------------------------------------------gene11728 ------------------------------------------------------------gene00528 ------------------------------------------------------------gene06886 ------------------------------------------------------------OS01G12490 ------------------------------------------------------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 ------------------------------------------------------------OS03G06654 ------------------------------------------------------------OS04G03980 ------------------------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ------------------------------------------------------------

Page 3: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G04180-AtYUC9 ------------------------------------------------------------AT1G04610-AtYUC3 ------------------------------------------------------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------------------------------------------AT4G13260-AtYUC2 ------------------------------------------------------------AT4G28720-AtYUC8 ------------------------------------------------------------AT4G32540 ------------------------------------------------------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 ------------------------------------------------------------AT5G43890-AtYUC5 ------------------------------------------------------------gene30882 ------------------------------------------------------------gene08377 ------------------------------------------------------------gene32686 GVMVGFLHVCPAWRRPSGNWANVCYLGLSSTRLTREIVYRSTVGGWGVSHRLLPQLAPRRgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 ------------------------------------------------------------gene11728 ------------------------------------------------------------gene00528 ------------------------------------------------------------gene06886 ------------------------------------------------------------OS01G12490 ------------------------------------------------------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 ------------------------------------------------------------OS03G06654 ------------------------------------------------------------OS04G03980 ------------------------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ------------------------------------------------------------

AT1G04180-AtYUC9 -------------------------------------MENMF-RL---------------AT1G04610-AtYUC3 ------------------------MYGN--NNKKSINITSMFQNL---------------AT1G21430-AtYUC11 ------------------------------------------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 ------------------------MCNN--NNTSCVNISSMLQ-----------------AT4G13260-AtYUC2 --------------------------MEFVTET---------LGK---------------AT4G28720-AtYUC8 -------------------------------------MENMF-RL---------------AT4G32540 ------------------------------------------MES---------------AT5G11320-AtYUC4 ------------------------------------------------------------AT5G25620-AtYUC6 -------------------------------MEG-------KLAH---------------AT5G43890-AtYUC5 -------------------------------------MENMF-RL---------------gene30882 ------------------------------------------------------------gene08377 -------------------------------------MENLF-RL---------------gene32686 RKTSIENNKCGFSQRDGARVGGNPPIPAYFNSDGVVGVGTMVDCLHVCPAWGRPTGNWAHgene01005 ------------------------------------------------------------gene27796 ------------------------------------------------------------gene08779 --------------------------MDYTTIQGKQSLDDPSLIH---------------gene11728 ------------------------------------------------------------gene00528 -----------------------------------MMFDSACHSQ---------------gene06886 ------------------------------------------------------------OS01G12490 --------MDCFAETEGKR-AHDPLYQRRAAAAAT---------P---------------OS01G16714 ------------------------------------------------------------OS01G16750 ------------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------------------------------------------------------------OS01G53200 --------MDPWSEIEGKR-AHDPIFQNYFSQNCRQSVDGFCKKR---------------OS02G17230 ------------------------------------------------------------OS03G06654 -------------------------------------MQGQQKQN---------------OS04G03980 ----------------------------------------MVLQH---------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 ------------------------------------------------------------OS12G08780 ------------------------------------------------------------OS12G32750 ---------MPTSQQDGGG-GGERLFHGGGAGDG-------DGGG---------------

AT1G04180-AtYUC9 MASEEYFSERRCVWVNGPVIVGAGPSGLATAACLHDQGVP-FVVVERSDCIASLWQKRTYAT1G04610-AtYUC3 IPEGSDIFSRRCIWVNGPVIVGAGPSGLAVAAGLKREGVP-FIILERANCIASLWQNRTYAT1G21430-AtYUC11 ---------MEKEIKILVLIIGAGPAGLATSACLNRLNIP-NIVVERDVCSASLWKRRSYAT1G48910-AtYUC10 -------------METVVVIVGAGPAGLATSVCLNQHSIP-NVILEKEDIYASLWKKRAYAT2G33230-AtYUC7 ---PEDIFSRRCIWVNGPVIVGAGPSGLAVAADLKRQEVP-FVILERANCIASLWQNRTYAT4G13260-AtYUC2 RIHDPYVEETRCLMIPGPIIVGSGPSGLATAACLKSRDIP-SLILERSTCIASLWQHKTYAT4G28720-AtYUC8 MDQDQDLTNNRCIWVNGPVIVGAGPSGLATAACLHEQNVP-FVVLERADCIASLWQKRTYAT4G32540 HPHNKTDQTQHIILVHGPIIIGAGPSGLATSACLSSRGVP-SLILERSDSIASLWKSKTYAT5G11320-AtYUC4 -MGTCRESEPTQIFVPGPIIVGAGPSGLAVAACLSNRGVP-SVILERTDCLASLWQKRTYAT5G25620-AtYUC6 -DHRGMTSPRRICVVTGPVIVGAGPSGLATAACLKERGIT-SVLLERSNCIASLWQLKTYAT5G43890-AtYUC5 MGSEDSSDRRRCIWVNGPVIVGAGPSGLATAACLREEGVP-FVVLERADCIASLWQKRTYgene30882 ---MAAAKTTRRILVPGPVIVGAGPSGLAAAACLKEKGIP-SLILERANCIASLWQLKTYgene08377 VDHE-DFFARRCIMVNGPVIVGAGPSGLATAACLRDQGVP-FEVLERADCVASLWQKRTYgene32686 VSAKSTHSCHLEMEEVEVVIVGAGPAGLATSACLNRLNIS-NVILEREDCYASLWKKRSYgene01005 ------------MEEVDVVIIGAGPAGLATSACLNRLKIS-NVVLEREDCCASLWKNRSY

Page 4: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene27796 ------------MPEAAVIIVGAGPSGLAVAGCLSRLEIP-YLLLEREDCFASLWKKYSYgene08779 KMNNLSSPPRCVVCVAGPVIVGAGPSGLATAACLKNKGVP-SVILERSNCLASLWQLKTYgene11728 -MGSCKDPKPNCEFVEGPIIVGAGPSGLAVAACLSNHGVP-SLILEKSNCIASLWQHKTYgene00528 SPDQNELFSRRCVWVNGPVIVGAGPSGLAVGAGLKDQGVP-FIILERADCIASLWQKRTYgene06886 -------MENNVFGNYLVVIVGAGPSGIATSALLNSMSIP-NIVFEREDCCASLWKKRSYOS01G12490 ATGVPVDDVDKVVDVPGAVIVGAGPAGVAVGALLGLRGVA-YVVLERCGCIASLWRHRTYOS01G16714 ------MAAVEQDQEEEVIIVGAGPSGLAAAACLSVRGVTGCLVLERDDCVASLWRHRTYOS01G16750 MAVAAEGEEMTPEHEEEVIIVGAGQSGLAAAACLSVRGVASCLVLERDDCVASLWRHRAYOS01G25470 ------------------------------------------------------------OS01G45760 -MDNKPAQERRETWVPGAVIVGAGPSGLAAAACLAARGVP-ATVLERSDSLASTWRHRMYOS01G53200 SADAAVARAERCIRVLGPIIVGAGPSGLAVAACLKEKGVD-SLVLERSNCIASLWQLKTYOS02G17230 ------------MEEVVVLIIGAGPAGLATAACLTLQHVA-YAIIERESCTASLWRHRTYOS03G06654 AGGGGGDNASPCIVLDGPIIVGAGPSGLAVAATLRQHGAP-FTVVERSGGVADLWTNRTYOS04G03980 SDRMDSLFSPQTSWVSGPIIVGAGPSGLAVAASLREQGVP-FTMLERADCIASLWQKRTYOS05G45240 ----------MLVWVQGPIVVGAGPSGLAAAACLKEKGID-SLVLERSSCLAPLWQLKMYOS07G25540 -------MAARVVWVNGPIVVGAGPAGLSVAACLRERGVP-SVLLERADCIASLWQRRTYOS11G10140 ---------MEAVEEVVVLIVGAGPAGLATAACLAQRHVP-YVIVERESCTASLWRHRAYOS11G10170 ---------MNAMEDVVVLIVGAGPAGLATAACLAQRHVP-YIIVERESSTASLWRHRAYOS12G08780 ------------MEKALVLIVGAGPSGLATAACLGQLSIP-YVIIEREDCTASLWRKHTYOS12G32750 GGGAAAAAAARQVWVPGPVIVGAGPSGLATAACLKARGVP-SLVLDKDATVAASWRERTY

AT1G04180-AtYUC9 DRLKLHLPKKFCQLPKM-PFPDHYPEYPTKRQFIDYLESYANRFDIKPEFNKSVESARFDAT1G04610-AtYUC3 DRLKLHLPKQFCQLPNY-PFPDEFPEYPTKFQFIQYLESYAANFDINPKFNETVQSAKYDAT1G21430-AtYUC11 DRLKLHLAKQFCQLPHM-PFPSNTPTFVSKLGFINYLDEYATRFNVNPRYNRNVKSAYFKAT1G48910-AtYUC10 DRLKLHLAKEFCQLPFM-PHGREVPTFMSKELFVNYLDAYVARFDINPRYNRTVKSSTFDAT2G33230-AtYUC7 DRLKLHLPKQFCQLPNL-PFPEDIPEYPTKYQFIEYLESYATHFDLRPKFNETVQSAKYDAT4G13260-AtYUC2 DRLRLHLPKDFCELPLM-PFPSSYPTYPTKQQFVQYLESYAEHFDLKPVFNQTVEEAKFDAT4G28720-AtYUC8 DRLKLHLPKQFCQLPKM-PFPEDFPEYPTKRQFIDYLESYATRFEINPKFNECVQTARFDAT4G32540 DRLRLHLPKHFCRLPLL-DFPEYYPKYPSKNEFLAYLESYASHFRIAPRFNKNVQNAAYDAT5G11320-AtYUC4 DRLKLHLPKHFCELPLM-PFPKNFPKYPSKQLFISYVESYAARFNIKPVFNQTVEKAEFDAT5G25620-AtYUC6 DRLHLHLPKQFCELPII-PFPGDFPTYPTKQQFIEYLEDYARRFDIKPEFNQTVESAAFDAT5G43890-AtYUC5 DRIKLHLPKKVCQLPKM-PFPEDYPEYPTKRQFIEYLESYANKFEITPQFNECVQSARYDgene30882 DRLRLHLPKKFCELILM-PFPADFPTYPTKQQFLGYLKAYAERFDLKPAFNTTVVSAKYDgene08377 DRLKLHLPKAFCQLPKL-PFPEDFPEYPTKRQFIDYLESYAKHFEINPKFNSCVQSARYDgene32686 DRLKLHLAKQFCALPYK-PFPKDAPRYMPRREFIQYLDNYVSTFNINPLYHRGVETAFFNgene01005 DRLKLHLAKQFCELPYM-PFPENTPTYVPRKEFIQYLDTYVSTFKINPLYHRSVETASFDgene27796 DRLHLHLQKQFCELPHM-SFPSSCPTYVPKKQFIQYLDDYVAHFKISPMYQRNVESATYDgene08779 DRLRLHLPKQFCELPFV-PFPSDFPTYPTKQQFIRYLDDYATKFDIQPRFNETVLTAQYDgene11728 DRLKLHLPKQFCQLPLM-GFPEDFPKYPTKQQFINYMESYASHFSIKPSFNQAVQNAAFDgene00528 DRLKLHLPKQFCQLPNF-PFPEDFPEYPSKNQFIKYLESYAKHFDINPNFNETVQSAKYDgene06886 DRLCLHLAKNFCSLPMM-PHSFRTATFMSKDKFADYVDKYVTRFNVNPRYCHNVESALYEOS01G12490 DRLCLHLPKRFCELPLR-PFPASFPEYPTRDQFLGYLDAYAREFGVEPVFRRAVISAEYDOS01G16714 DRVRLHLAKRYCALPHA-PHGEASPTYLPRDDFLRYLDAYASRFGVRARLRREVRSARYDOS01G16750 DRLRLHLPKRHCALPRA-PHAAAAPDYLPRDDFAAYLDAYASRFGVRTRLRREVRSARHDOS01G25470 ------------------------------------------------------------OS01G45760 DRLALHLPKRFCELPLL-PFPEEYPTYPSKDQFVAYMEAYAAAAGVAPRFGATVEEAAFDOS01G53200 DRLSLHLPRQFCELPLM-PFPAYYPIYPSKQQFVAYLESYAARFGICPTYNRTVVCAEYDOS02G17230 DRLKLHLAKEFCELPHM-AYPSGTPTYVPRESFVEYLDSYTDRFGIQPRYDTSVESATYDOS03G06654 DRLRLHLPKVFCELPHV-AFPPDFPTYPTKHDFLRYLHSYAARFAIAPLLRRTVTRAWYDOS04G03980 DRLKLHLPKQFCELPRM-AFPAHYPEYPTRRQFIDYLEDYAAAFDINPLFGHTVLSARYDOS05G45240 DRLSLHLPRQFCELPLF-PFPASYPDYPTKQQFVAYLESYAAKFGINPMYNHTVVCAEFDOS07G25540 DRLRLHLPKHFCELPGM-PFPDGYPEYPDRRQFVDYLQAYAARAGVEPRFNQSVTSARYDOS11G10140 DRLKLHLAKEFCELPHM-AYPVGTPTYIPRDMFVEYLDSYTDQFGIRPRYHTAIESAIYDOS11G10170 DRLKLHLAKEFCELPHM-AYPAGTPTYVPRDMFVEYLDSYANQFGIRPRYHTAVESAIHDOS12G08780 DRLKLHLAKEFCEMPHM-PYPEDTPTYIPKIQFLRYMDDYVEHFNICPKFNSSVESCLYDOS12G32750 ERLRLHLPRGFCELPLAPPFPPGTPPYPTRDQFVAYLDAYARAFAVEPRLGSRVRAASYD

AT1G04180-AtYUC9 ETSGLWRVRTT----S------DG-EEMEYICRWLVVATGENAERVVPEINGLMTEFD--AT1G04610-AtYUC3 ETFGLWRVKTISNMGQ------LGSCEFEYICRWIVVATGENAEKVVPDFEGL-EDFG--AT1G21430-AtYUC11 D--GQWIVKVVNKT---------TALIEVYSAKFMVAATGENGEGVIPEIPGLVESFQ--AT1G48910-AtYUC10 ESNNKWRVVAENTV---------TGETEVYWSEFLVVATGENGDGNIPMVEGI-DTFG--AT2G33230-AtYUC7 KRFGLWRVQTVLRSEL------LGYCEFEYICRWLVVATGENAEKVVPEFEGL-EDFG--AT4G13260-AtYUC2 RRCGLWRVRTTG--GK-------KDETMEYVSRWLVVATGENAEEVMPEIDGI-PDFG--AT4G28720-AtYUC8 ETSGLWRVKTVSKSES------TQ-TEVEYICRWLVVATGENAERVMPEIDGL-SEFS--AT4G32540 SSSGFWRVKTHD--------------NTEYLSKWLIVATGENADPYFPEIPGR-KKFS-GAT5G11320-AtYUC4 DASGLWNVKTQD---------------GVYTSTWLVVATGENAEPVFPNIPGL-KKFT-GAT5G25620-AtYUC6 ENLGMWRVTSVG--EE---------GTTEYVCRWLVAATGENAEPVVPRFEGM-DKFAAAAT5G43890-AtYUC5 ETSGLWRIKTTSSS-S------SG-SEMEYICRWLVVATGENAEKVVPEIDGLTTEFE--gene30882 TCSGLWLVKTLG--LK-------NEEEIEYVCQWLIVATGENAEEVVPEFEGT-KDFG--gene08377 ETSGFWRVNTVSTTGS------TR-SEVEYICRWLIVATGENAECVVPDIDGL-CEFG--gene32686 DYAGKWYVVVNNTR---------QGVQETYCGQFLVVASGENGEGYVPEIKGL-DTFN--gene01005 EDVGKWCVLVNNTE---------LGVQESYYAKFLVAATGENGEGYLPETNGL-GSFK--gene27796 EGSERWVVKAMNNDE-GC-----GGEVEVFLGRFLVVATGEATNPYVPEIEGL-SSFD--gene08779 PAVGFWRVRTAG--SE-------NGVETEYVTRWLIAATGENAEALVPKLEGI-MEFG--gene11728 SASGHWRVQTQD---------------FEYISRWLIVATGENAEPVIPDIHGI-DKFK-Ggene00528 ETFGLWRVKTIAQSGT------VFAVEVEYICRWLVVATGENSEKVVPEFEGL-ENFG--gene06886 EANQKWKIEVKNTEVTDG-----VGSLQVYYADFLVIATGENSRPVTPELPGI-ETFK--OS01G12490 GESWWVYTREVVAAAAGGEQAVLGCTMTVYRSRWLVVATGENAEPVVPEMDGA-GRFK--OS01G16714 AARARWLVDAVDLA---------TGRAERYAARHLVAAAGENDERVVPEVPGM-ETFP--OS01G16750 AARARWLVEAVDLA---------TGKAERYAARHLVAAAGENDERVVPEVPGM-DTFP--OS01G25470 ------------------------------------------------------------OS01G45760 AAVGAWRVRLDG--------------GEVLMARWLVVATGENAEPRVPDFPGM-QKFA-GOS01G53200 EQLQLWRVRT-RATGI-------MGEEVEYVSRWLVVATGENAEVVLPEIDGL-DDFK--OS02G17230 QGKKHWAVLAQDTD---------TGVVARLTARFLIMATGEKSAASIPLVPGL-AGFE--OS03G06654 HPASLWRVTTTTTSSS------ATSVITEYASPWLVVASGENAEVVVPKVKGR-ERFA--OS04G03980 ETSGLWRVRASS----------SAGAEMEYIGSWLVVATGENAESVVPDIPGI-DGFG--OS05G45240 ERLMLWRVRTTQATGM-------MEDDVEYVSQWLVVATGENSEAVLPVIDGL-EEFR--OS07G25540 DAAGLWRVRAEDVSVD------AAGDVTEYIGRWLVVATGENAERVVPEIDGA-DDFE--OS11G10140 GGKNRWAVLARDTD---------TSVVTRLTAQFLVVATGENSAASIPPVPGL-TRFE--OS11G10170 KGKNQWVVLVRDMD---------TSVVARLATQFLVVAAGENSAANIPPIPGL-SRFE--

Page 5: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

OS12G08780 DVQKYWVVTTHDQV---------NGMVSKYAARFLVVASGENSAGNIPSIPGL-EDFS--OS12G32750 AAIGFWRVAAVDEAGGGG-----AGGETEFLSRWLVVATGENAVAAWPA-EGV-GAYR--

AT1G04180-AtYUC9 GEVIHACEYKSGEKFRGKRVLVVGCGNSGMEVSLDLANHNAI-TSMVVRS-S--------AT1G04610-AtYUC3 GDVLHAGDYKSGGRYQGKKVLVVGCGNSGMEVSLDLYNHGAN-PSMVVRS-A--------AT1G21430-AtYUC11 GKYLHSSEYKNGEKFAGKDVLVVGCGNSGMEIAYDLSKCNAN-VSIVVRS-Q--------AT1G48910-AtYUC10 GEIMHSSEYKSGRDFKDKNVLVVGGGNSGMEISFDLCNFGAN-TTILIRT-P--------AT2G33230-AtYUC7 GDVLHAGDYKSGERYRGKRVLVVGCGNSGMEVSLDLCNHDAS-PSMVVRS-S--------AT4G13260-AtYUC2 GPILHTSSYKSGEIFSEKKILVVGCGNSGMEVCLDLCNFNAL-PSLVVRD-S--------AT4G28720-AtYUC8 GEVIHACDYKSGEKFAGKKVLVVGCGNSGMEVSLDLANHFAK-PSMVVRS-S--------AT4G32540 GKIVHASEYKSGEEFRRQKVLVVGCGNSGMEISLDLVRHNAS-PHLVVRN-T--------AT5G11320-AtYUC4 -PVVHTSAYKSGSAFANRKVLVVGCGNSGMEVSLDLCRYNAL-PHMVVRN-S--------AT5G25620-AtYUC6 GVVKHTCHYKTGGDFAGKRVLVVGCGNSGMEVCLDLCNFGAQ-PSLVVRD-A--------AT5G43890-AtYUC5 GEVIHSCEYKSGEKYRGKSVLVVGCGNSGMEVSLDLANHNAN-ASMVVRS-S--------gene30882 GPIVHTSSYKSGEMFREKKVLVVGCGNSGMEVCLDLCNYNAK-PSLVVKD-S--------gene08377 GEVVHASEYKSGEKYKGKKVLVVGCGNSGMELSLDLCNHNAS-PSIVVRS-S--------gene32686 GEFIHSSKYDNGLKYRGKDVLVVGSGNSGMEIAYDLSNYGAN-TSIVIRS-L--------gene01005 GEIIHSSEYGNGNKYRGKNVLVVGSGNSGMEIAYDLSNSGAN-TSIVIRS-LLLLLGRASgene27796 GEVLHSTRFKSGVEFKNKNVLVVGSGNSGMEIALDLANHGAR-TSIIVRS-P--------gene08779 GPIRHTSLYKTGEEFRGKKVLVVGCGNSGMEVCLDLCNHNAR-PSLVVRD-T--------gene11728 -LIRHTSLYKTGKDFRNQRVLVIGCGNSGMEVSLDLCRNNAT-PHMVVRN-T--------gene00528 GHVMHACDYRSGAAYGGKNVLVVGCGNSGMEVSLDLCNHDAS-PSMVVRS-S--------gene06886 GNVMHAQDYKCGASFKDQNVLVVGCGNSGMEISNDLAESGAH-ASIVVRS-Q--------OS01G12490 GQMMHSSEYRNGDGYAGKKVLVVGCGNSGMEVSLDLCNHNAR-ASMVVRD-T--------OS01G16714 GKVVHAADYRSAEGFKGKSVLVVGGGNSGMEIAYDLAVGGAA-TSIVIRS-E--------OS01G16750 GKVVHSADYRSAGAFKGRSVLVVGCGNSGFEIAYDLAAGGAAAVSIAVRG-E--------OS01G25470 ---MHVAVYKSGEAYRGKKVLVVGCGNSGMVVSLDLCDHSAL-PAMVVRD-A--------OS01G45760 -CAMHTSEYKSGEQFAGKKVLVVGCGNSGMEVSLDLCRHGAK-PSMVVRN-T--------OS01G53200 GTVMHTSSYKSGGAFAGKRVLVVGSGNSGMEVCLDLCNHNAN-PHIVVRD-A--------OS02G17230 GEAIHSSAYKSGNGYTGKSVLVVGAGNSGMEIAYDLATHGAH-TSIVVRS-P--------OS03G06654 GEALHSSEYRSGERFRGMRVLVVGCGNSGMEMCLDLCEHGAM-PFMSVRS-G--------OS04G03980 GEVVHVADYKSGEAYRGKRVLVVGCGNSGMEVSLDLCDHGAR-PAMVVRD-A--------OS05G45240 GSVIHTSAYKSGSKFAGKTVLVVGCGNSGMEVCLDLCNHNGY-PRIV-------------OS07G25540 GPVSHVAEYKSGAAYRGKRVLVVGCGNSGMEVCLDLCHHNAL-PAMVVRDSK--------OS11G10140 GEAIHSSAYKSGRAYTGKNVLVVGAGNSGMEIAYDLATHGAH-TSIVVRS-P--------OS11G10170 GEAIHSSAYKSGRAYTGKSVLVVGAGNSGMEIAYDLATHGAH-TSIVVRS-P--------OS12G08780 GHVIHSSSFRSADSYAAQRVLVVGCGNSGMEIAYDLSSHGAN-TSIVIRS-P--------OS12G32750 GAVMHTSSYKRGDEFAGKKVLVVGCGNSGMEVSLDLCNNGAA-TSMVVRD-K-------- * : . : :**:* ****: :. ** . :

AT1G04180-AtYUC9 -----------------------------------VHVLPREIMGKSTFGISVMMMK--WAT1G04610-AtYUC3 -----------------------------------VHVLPREIFGKSTFELGVTMMK--YAT1G21430-AtYUC11 -----------------------------------VHVLTRCIV-----RIGMSLLR--FAT1G48910-AtYUC10 -----------------------------------RHVVTKEVI-----HLGMTLLK--YAT2G33230-AtYUC7 -----------------------------------VHVLPREVLGKSTFELSVTMMK--WAT4G13260-AtYUC2 -----------------------------------VHVLPQEMLGISTFGISTSLLK--WAT4G28720-AtYUC8 -----------------------------------LHVMPREVMGKSTFELAMKMLR--WAT4G32540 -----------------------------------VHVLPREILGVSTFGVGMTLLK--CAT5G11320-AtYUC4 -----------------------------------VHVLPRDFFGLSTFGIAMTLLK--WAT5G25620-AtYUC6 -----------------------------------VHVLPREMLGTSTFGLSMFLLK--WAT5G43890-AtYUC5 -----------------------------------VHVLPREILGKSSFEISMMLMK--Wgene30882 -----------------------------------VHILPQEILGISTFGLSMWLLK--Wgene08377 -----------------------------------VHVLPREIYGKSTFELAVFLLK--Wgene32686 -----------------------------------THVLTKEIV-----FLGMVLSK--Ygene01005 TLSSGRVTARMCKWARGRRHDASGLVLTWNGRRGWVHVLTKEIV-----FIGMVLSK--Ygene27796 -----------------------------------VHFLSKRMV-----YLALVLLR--Ygene08779 -----------------------------------VHVLPREMLGKSTFGLSMLLLK--Wgene11728 -----------------------------------VHVLPREMFGFSTFQIAMTLLK--Wgene00528 -----------------------------------VHVLPREILGKSTFELAVFLMK--Wgene06886 -----------------------------------VHVLSRELV-----RLGMVLLD--YOS01G12490 -----------------------------------VHVLPREILGFSTFGLSMWLLR--WOS01G16714 -----------------------------------LHLVSKEIW-----NLAMTLYR--YOS01G16750 -----------------------------------VHLVSREVW-----SVGMALQR--YOS01G25470 -----------------------------------VHVLPGEVLGKSTFELAVLLMA--WOS01G45760 -----------------------------------VHVLPREMFGLSTFGIAMALLR--WOS01G53200 -----------------------------------VHILPREMLGQSTFGLSMWLLK--WOS02G17230 -----------------------------------VHIMTKELI-----RFGMTMVQNLGOS03G06654 -----------------------------------VHVLPREMFGASTFGIAMKLLR--WOS04G03980 -----------------------------------VHVLPREVLGKSTFELAVLLMA--WOS05G45240 -----------------------------------VHILPREMLGQPTFRLAMWLLK--WOS07G25540 -----------------------------------VHVLPREMLGVATFSVAVFLLR--FOS11G10140 -----------------------------------IHIMTKELI-----RFGMTVVQNLGOS11G10170 -----------------------------------VHIMTKELI-----WYGMTMVQNLGOS12G08780 -----------------------------------LHVMTKELI-----HMGMKLA-SWSOS12G32750 -----------------------------------IHVLPREILGISTFGLSVFLLK--W *.: . . :

AT1G04180-AtYUC9 LPLWLVDKLLLILSWLVLG-SLSNYGLKRPDIGPMELKSMT---GK-TPVLDIGALEKIKAT1G04610-AtYUC3 MPVWLADKTILFLARIILG-NTDKYGLKRPKIGPLELKNKE---GK-TPVLDIGALPKIRAT1G21430-AtYUC11 FPVKLVDRLCLLLAELRFR-NTSRYGLVRPNNGPFLNKLIT---GR-SATIDVGCVGEIKAT1G48910-AtYUC10 APVAMVDTLVTTMAKILYG-DLSKYGLFRPKQGPFATKLFT---GK-APVIDVGTVEKIRAT2G33230-AtYUC7 MPVWLVDKTLLVLTRLLLG-NTDKYGLKRPEIGPLELKNTA---GK-TPVLDIGAISMIKAT4G13260-AtYUC2 FPVHVVDRFLLRMSRLVLG-DTDRLGLVRPKLGPLERKIKC---GK-TPVLDVGTLAKIRAT4G28720-AtYUC8 FPLWLVDKILLVLSWMVLG-NIEKYGLKRPEMGPMELKSVK---GK-TPVLDIGAIEKIRAT4G32540 LPLRLVDKFLLLMANLSFG-NTDRLGLRRPKTGPLELKNVT---GK-SPVLDVGAMSLIRAT5G11320-AtYUC4 FPLKLVDKFLLLLANSTLG-NTDLLGLRRPKTGPIELKNVT---GK-TPVLDVGAISLIRAT5G25620-AtYUC6 LPIRLVDRFLLVVSRFILG-DTTLLGLNRPRLGPLELKNIS---GK-TPVLDVGTLAKIKAT5G43890-AtYUC5 FPLWLVDKILLILAWLILG-NLTKYGLKRPTMGPMELKIVS---GK-TPVLDIGAMEKIKgene30882 FPMRLVDRFLLLVSRFLLG-DTARFGIHRPRRGPLELKSVT---GK-TPVLDIGTLAKIRgene08377 LPVWLADKLLLLFSWLILG-SIEKYGLNRPSVGPMELKNTQ---GK-TPVLDIGALDKIKgene32686 LPV----------------------------------KEHN---GQ-APIVDVGSIEKIKgene01005 LPIMVVDGIVMFLTKLKFG-NLSKYGIQNPKMGPFHIKQNE---GH-SPIIDVGTIKKIK

Page 6: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene27796 LSLSKVDTLMVLLSKLVYG-DLAKYGIARPKEGPFFMKIKY---GK-YPAIDVGTCSKIKgene08779 LPIRLVDRLLLVASRLLLG-NTSQLGLVRPKLGPLELKNLS---GK-TPVLDVGTLAKIRgene11728 IPVKLVDRILLLVASLTLG-NTDQLGLRRPKTGPIELKAAT---GK-TPVLDVGALSLIKgene00528 VPLWLADKILLILAWIFLG-NLQKYGIKRPSTGPLQLKHNS---GK-TPVLDIGALQKIRgene06886 LPMNIVDRFILYLAKFSYG-DLPSYGISPPVEGPFFFKALT---GK-TPVIDRGTVKKIROS01G12490 LSVQTVDWLVLLLSFLVFG-DTARLGIPRPSLGPFELKSVS---GK-TPVLDVGTLAKIKOS01G16714 LPVWVIDKVVLLMCAAVFG-DTARYGLRRPAVGPFTMKATT---TM-YPVVDVGTFAKIROS01G16750 LPTWAVDKVVLLMCAVVFGGDTARYGLRRPAVGPFSMKMTT---PA-YPVFDVGTFAKIROS01G25470 LPLWLVDKILVLLAWFVLG-NLAKLGIRRPTTGRLGAMGRRLGGGRAAPAMSEDAIGDVLOS01G45760 LPVQLVDRFLLTAAHLILG-NTGQFGLRRPKTGPIELKNLT---GR-TPVLDVGTLDHIKOS01G53200 LPVHVVDRILLLIAQTMLG-DTAQLGLKRPTIGPLELKSLS---GK-TPVLDVGTFAKIKOS02G17230 LSVTIVDPLLVMAAKLIFW-DLSKHGIMRPKMGPLLLKSQT---GK-SAVIDVGTAKLITOS03G06654 LPIKMVDRFLLLVARMVLG-DTEKYGLKRPKLGPLEIKNIT---GK-SPVLDVGAWSLIKOS04G03980 LPLWLVDKILVLLAWLVLG-NLAKLGIRRPATGPLELKNTT---GR-TPVLDYGALARIROS05G45240 LPIHIVDRILLLVARAILG-DTSQFGLKRPSLGPLELKSLS---GK-TPILDIGTLAKIKOS07G25540 LPLWVVDRILVVLAWLFLG-DLAKIGITRPSRGPLELKNTR---GR-TPVLDIGALARIROS11G10140 LTVTTADSLLVMAANFYFG-DLSKHGITRPKIGPLLLKSQT---GR-SAVIDVGTARLIKOS11G10170 LNVTAVDSLLVMAANFYFG-DLSKHGIMRPKMGPLLLKSQT---GR-SAVIDVGTARLIKOS12G08780 LPVKFVDFILVVLAYLWFG-NLSKYGIVRPNKGPLLLKANT---GR-SAVIDVGTVELIKOS12G32750 FPIKWVDALLLIFSRLILG-NIEKYGLRRPKIGPLQIKCST---GK-TPVLDIGALKKIK .. :

AT1G04180-AtYUC9 SGDVEIVP-AIKQFS-RHHVELVDGQKLDIDAVVLATGYRSNVPSWLQ-E-SEFFSKNGFAT1G04610-AtYUC3 SGKIKIVP-GIIKFG-KGKVELIDGRVLEIDSVILATGYRSNVPSWLK-D-NDFFSDDGIAT1G21430-AtYUC11 SGKIQVVT-SIKRIE-GKTVEFIDGNTKNVDSIVFATGYKSSVSKWLEVDDGDLFNENGMAT1G48910-AtYUC10 DGEIQVINGGIGSIN-GKTLTFENGHKQDFDAIVFATGYKSSVCNWLE-DYEYVMKKDGFAT2G33230-AtYUC7 SGKIKIVA-GIAKFG-PGKVELVDGRVLQIDSVILATGYRSNVPSWLK-E-NDL-GEIGIAT4G13260-AtYUC2 SGHIKVYP-ELKRVM-HYSAEFVDGRVDNFDAIILATGYKSNVPMWLK-GVNMFSEKDGFAT4G28720-AtYUC8 LGKINVVP-GIKRFN-GNKVELVNGEQLDVDSVVLATGYRSNVPYWLQ-E-NEFFAKNGFAT4G32540 SGMIQIME-GVKEIT-KKGAKFMDGQEKDFDSIIFATGYKSNVPTWLQ-G-GDFFTDDGMAT5G11320-AtYUC4 SGQIKVTQ-AVKEIT-RNGAKFLNGKEIEFDSIILATGYKSNVPDWLK-E-NSFFTKEGMAT5G25620-AtYUC6 TGDIKVCS-GIRRLKRH-EVEFDNGKTERFDAIILATGYKSNVPSWLK-ENKMFSKKDGFAT5G43890-AtYUC5 SGEVEIVP-GIKRFS-RSHVELVDGQRLDLDAVVLATGYRSNVPSWLQ-E-NDLFSKNGFgene30882 SGHIKVCK-AIKQVK-HQSVEFIDGKVESFDAIILATGYRSNVMSWLK-ETSMFSEKNGLgene08377 SGGIKVVH-GIKRFS-YGRVELVGGEVLDIDAVVLATGYRSNVPSWLQ-E-GDFFSKNGFgene32686 RGEIKK----------------------CYDAIIFATGYKSTVLKWLK-DDNYLFSDNGMgene01005 SGDIQVLP-SITNIE-GNEIRFENGYLKWYDAIVFATGYKSTVLKWLK-DENNLFGDNGMgene27796 SGEIQVLPTEIGSIR-GNDVKLKNGKSYQFDSIVFCTGFKRSTHLWLK-GDDYLLKEDGLgene08779 TGDIQVRP-AIKRLKRHRAVEFVDGRTENFDAIVLATGYKSNVPSWLK-EGEMFSKEDGLgene11728 SGKIKVVE-NVKEIT-INGAKFMNGQEKEFDSIILATGYKSNVPTWLK-G-CDFFTKEGMgene00528 SGEIKVVP-GIKRFS-HGSVELVNGQNLMIDSVILATGYRSNVPSWLK-E-NEFFSGDGIgene06886 SGKIKVFS-GVETIR-HNIVEFKNGSIQRVDAIVMATGYRSVAHKWLK-DYKVILDENDKOS01G12490 SGDIKVTP-AIQCFQ-EHGVEFVDGSTEEFDVVILATGYKSNVPYWLK-EKEFFSEKDGFOS01G16714 SGEIRVLPAAIKGVR-GRDVEFADGQRHAFDAVVFATGYRSTTKHWLK-SDDGLIGDDGMOS01G16750 SGEIRVVPAGIKSVR-GGDVEFADGRRHAFDAIVFATGYRSTTKQWLK-SDDGLIGDDGMOS01G25470 HMLEDVVG---------DEATTLVGSSTPCN---------SHH---NS-D-AELMQSLSSOS01G45760 SGKIKVVG-AVKEMT-RQGVRFTDGKEEQFDTIILATGYRSNVPSWLK-DAGDLFTREGIOS01G53200 SGDIKVRP-AIKQIS-GRQVEFMDTRLEEFDVIVLATGYKSNVPFWLK-DRELFSEKDGLOS02G17230 RGVIDVLE-GILKIN-ANNVEFHCGRQIPFDAIVFATGYKSTVNTWLK-NGESMFRNDGFOS03G06654 SGNIKIVP-EVESFS-GNGARFVDGNEMAFDAVIFATGYRSNVPSWLQ-EDGELFTEEGKOS04G03980 SGEITVVP-GVARFG-RGFAELADGRVIALDAVVLATGYRSNVPQWLQ-G-NDFFNKDGYOS05G45240 SGDIKVRP-AIRRIA-GQQVKFVDGRSEQFDAIVLATGYKSNVPCWLK-VYGNT---ADVOS07G25540 SGDIEVVP-GIRRLL-RGGAELVDGRRVPADAVILATGYQSNVPQWLK-G-SDFFTQEGYOS11G10140 GGVIKVFQ-GISKIK-TNSIEFHGGKQIPFDAIVFATGYKSTVNTWLK-KNSIIA-----OS11G10170 GGVIKVFQ-GISKIN-TNSVEFHGGRQNSFDAIVFATGYKSTVNAWLK-NGESMFKDDGFOS12G08780 KGDIKVFG-TISCIK-GNVVEFDDGKESYFDAIVFATGYTSTANNWLK-NGEDMMNKEGMOS12G32750 NGEIKVVP-AIHCFT-EDGVEFVNGCREDFDAVIFATGYKSNVPSWLK-EEEFFSESDGF : .

AT1G04180-AtYUC9 PKS---PF-PNAWKGKSGLYAAGFTRKGLAGASVDAVNIAQDIGNVWREETKRQKMRRNVAT1G04610-AtYUC3 PKN---PF-PNGWKGEAGLYAVGFTRKGLFGASLDAMSVAHDIANRWKEESKQQKKTAAAAT1G21430-AtYUC11 PKR---EF-PDHWKGKNGLYSAGFGKQGLAGISRDARNI---ARDI--------------AT1G48910-AtYUC10 PKA---PM-PKHWKGEKNLYCAGFSRKGIAGGAEDAMSVADDIRSILATLKNN---*---AT2G33230-AtYUC7 EKN---PF-PKGWKGKAGLYAVGFTGRGLSGASFDAMSVAHDIANSWKEETKQQIKTVATAT4G13260-AtYUC2 PHK---PF-PNGWKGESGLYAVGFTKLGLLGAAIDAKKIAEDIEVQRHFLPL----ARPQAT4G28720-AtYUC8 PKT---VADNNGWKGRTGLYAVGFTRKGLSGASMDAVKIAQDIGSVWQLETKQPTKRSRGAT4G32540 PKT---PF-PNGWRGGKGLYTVGFTRRGLLGTASDAVKIAGEIGDQWRDEIK-GSTR--NAT5G11320-AtYUC4 PKT---PF-PNGWKGEKGLYTVGFTRRGLSGTAYDAVKIAEDITDQWMKFNGPLSCR--NAT5G25620-AtYUC6 PIQ---EF-PEGWRGECGLYAVGFTKRGISGASMDAKRIAEDIHKCWKQDEQLQCKLG-KAT5G43890-AtYUC5 PKS---PF-PNAWKGKSGLYAAGFTRKGLAGASADAVNIAQDIGNVWREETKRQKMRTRVgene30882 PRK---AF-PNGWKGESGLYSVGFTQRGLLGASMDAKRIAEDIEHRRKAEKATHIMPRLVgene08377 PKQ---PF-PQGWKGNAGLYAVGFTRRGLSGASCDAVRIAQDIGNVWKCETKQNKKRTTAgene32686 PKR---SF-PNHWKSENGLYCAGFSRRGLFGISHDTQKIANDISFSLSQNKKG---I*--gene01005 PKK---SF-PNHWKSQNGLYCAGFSKRMFSKLEMLASKKLAFLRKINNNNQQG---S--Lgene27796 PRP---SF-PNHWKGKNGLFCVGLSRRGLYGSSEDAQNIANDIQSSL*------------gene08779 PKL---PF-PNGWKGERGLYAVGFTKRGLLGASMDAKRIAEDIERCWKAEAKHST-PF-Tgene11728 PRA---PC-PSCWKGSDGLYTVGFSRKGLSGTAYDAVEIAKDIADHWKTSKDCKGSV--Agene00528 PRN---PF-PNGWKGKAGLYAVGFTRRGLSGASLDAIGVSQDISKSWKEETKQKRKTVAAgene06886 PKN---KY-PGHWKGEKGVYCVGFSGKGIPGISFDSRAVANDIHQILLVKTGR---TGSSOS01G12490 PRK------GNAWKGQNGLYAVGFSRRGLSGVSMDANNIVQDIVQRLHDMGYERSENN*-OS01G16714 AGR---SY-PDHWKGENGLYCAGMVRRGIYGSYEDAEHIADDISKQLRSSSKPTHNNGSAOS01G16750 AGR---SY-PDHWKGENGLYCAGMVRRGIYGSGEDAELIADDISKQMKRWSSEPVYNGHIOS01G25470 *-----------------------------------------------------------OS01G45760 SKV---PF-PNSWRGRNGLYTVGFTQRGLLGTSSDALNVAKDIHCQWRERDRSAINVL-EOS01G53200 PRK---AF-PNGWKGENGLYSVGFTRRGLMGTSVDARRIAHDIEQQWKARGKHPGVLL*-OS02G17230 PKK---KF-PNHWRGENGLYCAGFARRGLVSIAMDAKNIVDDIRATM-------------OS03G06654 LRSSGSSS-EWRWRGPNGLYCVGFSGRGLLGAGADALRAAADIAGRWQETQQAAANISSVOS04G03980 PKT---AF-PNGWKGESGLYAVGFTRRGLSGASADAMRAAKDLARVWKEATKPTKK-STAOS05G45240 PFAV-EEF-QYFFS*---------------------------------------------OS07G25540 PRV---PF-PDGWKGESGLYSVGFTRRGLSGVSSDAVKVAQDIAMAWNHQTATTR*----OS11G10140 -----------GWIG*--------------------------------------------OS11G10170 PKN---YF-PNHWRGENGLYCAGFARRGLAGIAMDAKNIANDIVAAM-------------OS12G08780 PKK---DF-PNHWKGSNGLYCVGFARRGLSGIAHDAKNVANDVKAFL-------------OS12G32750 PRK---AF-PHSWRGKNGLYATGFTKRGLQGTSYDAAMIAADIARRWTKSLAGPTAAADA

Page 7: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G04180-AtYUC9 -------GHRRCISVA*-------------------------------------------AT1G04610-AtYUC3 -------RHRRCISHF*-------------------------------------------AT1G21430-AtYUC11 -------DSLVCGRSSK-----------NKLSK*--------------------------AT1G48910-AtYUC10 ------------------------------------------------------------AT2G33230-AtYUC7 -------RHRRCISHF*-------------------------------------------AT4G13260-AtYUC2 ------HC*---------------------------------------------------AT4G28720-AtYUC8 -------SLRRCISQQF*------------------------------------------AT4G32540 ------MCSSRFVFTSKS*-----------------------------------------AT5G11320-AtYUC4 ------ICSSHIIHLHFNKS*---------------------------------------AT5G25620-AtYUC6 ------RMKRKFSESDCGGN*---------------------------------------AT5G43890-AtYUC5 -------GHRRCISVA*-------------------------------------------gene30882 ------TCASPLAQP*--------------------------------------------gene08377 -------GHRRCISQTF*------------------------------------------gene32686 ------------------------------------------------------------gene01005 SRGAIRLDARRCESSALQGWTLVGVRSRSELASRGCWRLVGIKGFAEVKHLHMVTGKSAAgene27796 ------------------------------------------------------------gene08779 ------RSHLPLSSSP*-------------------------------------------gene11728 ------SCDSHVILLK*-------------------------------------------gene00528 -------RHRRCISHF*-------------------------------------------gene06886 QEEVTLVYVMR------LVWH------RQRLPH--------VGGSPKIL--RLVVPKISQOS01G12490 ------------------------------------------------------------OS01G16714 *-----------------------------------------------------------OS01G16750 SNGSP*------------------------------------------------------OS01G25470 ------------------------------------------------------------OS01G45760 ------ISNSSF*-----------------------------------------------OS01G53200 ------------------------------------------------------------OS02G17230 -------YQVSC*-----------------------------------------------OS03G06654 ------*-----------------------------------------------------OS04G03980 -------CHRRCISVIF*------------------------------------------OS05G45240 ------------------------------------------------------------OS07G25540 ------------------------------------------------------------OS11G10140 ------------------------------------------------------------OS11G10170 -------DKMSC*-----------------------------------------------OS12G08780 -------DLMAPF*----------------------------------------------OS12G32750 ------DHHETYIAN*--------------------------------------------

AT1G04180-AtYUC9 -----AT1G04610-AtYUC3 -----AT1G21430-AtYUC11 -----AT1G48910-AtYUC10 -----AT2G33230-AtYUC7 -----AT4G13260-AtYUC2 -----AT4G28720-AtYUC8 -----AT4G32540 -----AT5G11320-AtYUC4 -----AT5G25620-AtYUC6 -----AT5G43890-AtYUC5 -----gene30882 -----gene08377 -----gene32686 -----gene01005 CRCC*gene27796 -----gene08779 -----gene11728 -----gene00528 -----gene06886 TS-N*OS01G12490 -----OS01G16714 -----OS01G16750 -----OS01G25470 -----OS01G45760 -----OS01G53200 -----OS02G17230 -----OS03G06654 -----OS04G03980 -----OS05G45240 -----OS07G25540 -----OS11G10140 -----OS11G10170 -----OS12G08780 -----OS12G32750 -----

Page 8: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

PIN genes

AT1G23080-AtPIN7 -----------MITWHDLYTVLTAVIPLYVAMILAYGS-VRWWKIFSPDQCSGINRFVAIAT1G70940-AtPIN3 -----------MISWHDLYTVLTAVIPLYVAMILAYGS-VRWWKIFSPDQCSGINRFVAIAT1G73590-AtPIN1 -----------MITAADFYHVMTAMVPLYVAMILAYGS-VKWWKIFTPDQCSGINRFVALAT1G77110-AtPIN6 -----------MITGNEFYTVMCAMAPLYFAMFVAYGS-VKWCKIFTPAQCSGINRFVSVAT2G01420-AtPIN4 -----------MITWHDLYTVLTAVVPLYVAMILAYGS-VQWWKIFSPDQCSGINRFVAIAT5G15100-AtPIN8 -----------MISWLDIYHVVSATVPLYVSMTLGFLS-ARHLKLFSPEQCAGINKFVAKAT5G16530-AtPIN5 -----------MINCGDVYKVIEAMVPLYVALILGYGS-VKWWHIFTRDQCDAINRLVCYAT5G57090-AtPIN2 -----------MITGKDMYDVLAAMVPLYVAMILAYGS-VRWWGIFTPDQCSGINRFVAVgene04070 -----------MISWNDLYKVLTAVVPLYVAMILAYGS-VRWWKIFSTDQCSGINRFVAIgene05434 -----------MISGKDVYNVLASIVPLYVAMILAYGS-VRWWNILTPDQCSGINRFVVVgene16792 -----------MIGWEDVYKVVVAMVPLYFALILGFGS-VRWWGIFTPEQCGAINRFVCFgene06077 ---------------------------------MVVGRQLWWLGGLVAGSFLGLRRMDMVgene09384 ---------------------MTAVVPLYVAMVLAYGS-VKWWKIFTPDQCSGINRFVALgene12312 -----------MISGEDVYEVLASIVPLYVAMILAYGS-VRWWKIFTPDQCLGINRFVAVgene12314 -----------MITGKDIYDVLASIVPLYVAMLLAYGS-VRWWKIFTPDQCSGINRFVAVgene01267 -----------MISLIDVYHVVAATVPLYVAMILAYVS-VKWWKLFTPEQCSGINKFVAKgene00469 -----------MISLEDLYHVLTAVVPLYVAMILAYGS-VKWWKIFNPDQCSGINRFVALOS01G45550 -----------MISGHDFYTVMAAVVPLYVAMFLAYGS-VRWWGIFTPDQCSGINRFVAIOS01G51780 -----------MVSWKDIYLVLEATVPLYVAMILAYLS-IKWWKLFTPEQCSGINKFVAKOS01G58860 -----------MITGSEVYQVVEAMAPLYTAAALGYGS-VRWLKAFSNEQCAGINHFVALOS01G69070 -----------MIGWGDVYKVVAATVPLYFALFLGYGS-VRWWRIFTREQCDAVNRLVAFOS02G50960 -----------MITAADFYHVMTAMVPLYVAMILAYGS-VKWWRIFTPDQCSGINRFVALOS05G50140 -----------MISWHELYMVLSAVVPLYVAMMVAYGS-VRWWGVLTPEQCSGINRFVAVOS06G12610 -----------MITGADFYHVMTAMVPLYVAMILAYGS-VKWWRIFTPDQCSGINRFVALOS06G44970 -----------MITGRDIYDVLAAIVPLYVAMFLAYGS-VRWWGIFTPDQCSGINRFVAVOS08G41720 ------------------------MAPLYFALGLGYGS-VRWWRFFTAEQCAAINTMVVYOS09G32770 ------------------------MAPLYFALGLGYGS-VRWWRLFTADQCDAVNRLVACOS11G02950 MAEIPYGLGSHMIGWVDIGKILSAIAPLYFALVLGYCSSKRWWRIFTAEDSEAI--MVAWOS11G04190 -----------MITVVDLYHVLTAVVPLYVAMTLAYAS-VRWWRIFSPDQCSGINRFVAL : : . .: :

AT1G23080-AtPIN7 FAVPLLSFHFISSNNPYAMNLRFIAADTLQKLIMLTLLI---IWANFTR-----------AT1G70940-AtPIN3 FAVPLLSFHFISTNNPYAMNLRFIAADTLQKIIMLSLLV---LWANFTR-----------AT1G73590-AtPIN1 FAVPLLSFHFIAANNPYAMNLRFLAADSLQKVIVLSLLF---LWCKLSR-----------AT1G77110-AtPIN6 FAVPVLSFHFISQNNPYKMDTMFILADTLSKIFVFVLLS---LWAVF--------F----AT2G01420-AtPIN4 FAVPLLSFHFISTNDPYAMNFRFVAADTLQKIIMLVLLA---LWANLTK-----------AT5G15100-AtPIN8 FSIPLLSFQIISENNPFKMSPKLILSDILQKFLVVVVLA---MVLRFWHPT---GG----AT5G16530-AtPIN5 FTLPLFTIEFTAHVDPFNMNYRFIAADVLSKVIIVTVLA---LWAKYS------------AT5G57090-AtPIN2 FAVPLLSFHFISSNDPYAMNYHFLAADSLQKVVILAALF---LWQAFSR-----------gene04070 FAVPLLSFHFISTNDPYTMNFRFIAADTLQKIIMLFALA---LWTNFTR-----------gene05434 FAVPLMP-----------------------------------------------------gene16792 FTLPLFTFEFTAHVDPFEWNYRFIAADAISKLIIVVVLA---FWAKCS------------gene06077 LDLSLG------------LSGHLAEGDNFGGFILLENLV---------------------gene09384 FAVPLLSFHFISLNNPYTMNIRFLAADTLQKLIVLAVLA---VWSKVSK-----------gene12312 FAVPLLSFHFIASNDPYAMDYLFIAADSLQKVVIFVVLI---LWQIFSK-----------gene12314 FAVPLLSFHFISSNDPYTMDYQFIAADSLQKVVILVALF---LWQTFSK-----------gene01267 FSIPLLSFQVISANNPYKMNLKLILSDGLQKAIAFLALT---AITKF--------S----gene00469 FVVPLLSFHFISTKNPYAMNYRFIAADTLQKLIVLGVLA---VWSRTSS-----------OS01G45550 FAVPLLSFHFISTNDPYAMNLRFLAADTLQKLLVLAGLA---AWSRLPSRT---------OS01G51780 FSIPLLSFQVISTTDPYDMNIKLIYSDILQKSLALLGFA---AISKA--------C----OS01G58860 YAVPVLIFDMVSTNNVYKMNGRLIAADTLQKAVLLLGLM---AWALWERSRARGAGAKAKOS01G69070 FALPFFTFEFTLHTDPFQVNYRAVAADVISKAVIVAVIG---AWARFM------------OS02G50960 FAVPLLSFHFISTNNPYTMNLRFIAADTLQKLMVLAMLT---AWSHLSR-----------OS05G50140 IAVPLLSFHFISSSDPYAMNLRFVAADTLQKVLVLAALA---AWSRFPARFV--PP----OS06G12610 FAVPLLSFHFISTNNPYTMNLRFIAADTLQKLIVLALLT---LWSHLSR-----------OS06G44970 FAVPLLSFHFISTNDPYSMNYRFLAADSLQKLVILAALA---VWHNLLSRYRRNGG----OS08G41720 FSMPFFTFDFVVRTDPFAMNYRVIAADAVSKAIAIAAM---AAWARTRC-----GCA---OS09G32770 FAVPFFAFDFAARIDPFALSYRVLAADALSKLAVALALAACAAAASTRC----CGSGGGKOS11G02950 FALPFFTFEFTLHLDPYNVRYSLIAADSISKLIIVIVIG---IGVGLIF--RKE------OS11G04190 FAVPLLSFHFISTNNPFAMNLRFLAADTLQKLIVLALLA---LWCRLSA----------- : .

AT1G23080-AtPIN7 ---SGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEY----SGSLMVQIVVLQCIIWYTLAT1G70940-AtPIN3 ---SGSLEWSITIFSLSTLPNTLVMGIPLLIAMYGEY----SGSLMVQIVVLQCIIWYTLAT1G73590-AtPIN1 ---NGSLDWTITLFSLSTLPNTLVMGIPLLKGMYGN----FSGDLMVQIVVLQCIIWYTLAT1G77110-AtPIN6 --KAGGLDWLITLFSIATLPNTLVMGIPLLQAMYGD----YTQTLMVQLVVLQCIIWYTLAT2G01420-AtPIN4 ---NGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGTY----AGSLMVQVVVLQCIIWYTLAT5G15100-AtPIN8 --RGGKLGWVITGLSISVLPNTLILGMPILSAIYGD----EAASILEQIVVLQSLIWYTIAT5G16530-AtPIN5 NKGS--YCWSITSFSLCTLTNSLVVGVPLAKAMYGQ----QAVDLVVQSSVFQAIVWLTLAT5G57090-AtPIN2 ---RGSLEWMITLFSLSTLPNTLVMGIPLLRAMYGD----FSGNLMVQIVVLQSIIWYTLgene04070 ---NGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGHQIP-EAGSLMVQVVVLQCIIWYTLgene05434 ------------------------------------------------------------

Page 9: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene16792 SKGS--YSWSITSFSLCTLTNSLVVGVPLMKAMYGP----MAVDLVVQSSVVQAIIWLTVgene06077 --KARQPRVDITLFTLSSLPNTLIIGIPLLKAMYGD----ASVTLMVQIGALQSIICQVSgene09384 ---RGCLEWTITLFSVSTLPNTLVMGIPLLKGMYGD----FSGSLMVQIVVLQCIIWYTLgene12312 ---RGSLEWMITLFSLSTLPNTLVMGIPLLKAMYGD----SSATLMVQIVVLQSIIWYTLgene12314 ---RGNLEWMITLFSLSTLPNTLVMGIPLLKAMYGD----FSGGLMVQIVVLQSVIWYTLgene01267 --SHGGLNSIITGLSLSTLPNTLILGIPLLKAMYAE----EAGALVSQIVVLQSLVWYNLgene00469 ---RGSLDWSITLFSLSTLPNTLVMGIPLLKGMYGD----SSGTLMVQIVVLQCIIWYTLOS01G45550 --GAPRLDWSITLFSLSTLPNTLVMGIPLLIAMYGP----YSGSLMVQIVVLQCIIWYTLOS01G51780 --CAEKFDWLITGFSLSTLPNTLIVGIPLLKGMYGE----QAGKLLSQIVVLQSLIWYTLOS01G58860 AAVSSPLQWVITCFSVASLPNTIIMGVPLLNGMYGP----VSKDLMKQIVVMQFCIWYNVOS01G69070 SKGGCAVSWSITSFSLSTLTNSLVVGVPMARAMYGE----WAQQLVVQLSVFQAIVWLTLOS02G50960 ---RGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGE----FSGSLMVQIVVLQCIIWYTLOS05G50140 --AWPPLDCSITLFSVSTLPNTLVMGIPLLVSMYGP----YSGDLMVQIVVLQSIVWYTLOS06G12610 ---RGSLEWTITLFSLSTLPNTLVMGIPLLKGMYGE----FSGSLMVQIVVLQCIIWYTLOS06G44970 --AAASLDWTITLFSLSTLPNTLVMGIPLLRAMYGD----FSGSLMVQIVVLQSVIWYTLOS08G41720 AAKAGAQSWSITGFSLAALNNTLVVGVPLLDAMYGR----WAQDLVVQIAVVQSMVWFPLOS09G32770 RGGGGGFSWCITGFSLATLNNTLVVGVPLLDAMYGK----WARDLIVQISVVQTIVYFPLOS11G02950 GLCTAVIDWCISGFSLASLTNSLVVGVPMARAMYGN----WAGQVVVQLSIFQAIVWLTSOS11G04190 ---RGSLDWLITLFSLSTLPNTLVMGIPLLKGMYAAAADVDSGSLMVQIVVLQCIIWYTL

AT1G23080-AtPIN7 LLFLFEYRGAKILIMEQFPE-TGASIVSFKVESDVVSLDGHD----FLETDAQIGDDGKLAT1G70940-AtPIN3 LLFLFEFRGAKMLIMEQFPE-TAASIVSFKVESDVVSLDGHD----FLETDAEIGDDGKLAT1G73590-AtPIN1 MLFLFEYRGAKLLISEQFPD-TAGSIVSIHVDSDIMSLDGRQ----PLETEAEIKEDGKLAT1G77110-AtPIN6 LLFLFELRAARLLIRAEFPGQAAGSIAKIQVDDDVISLDGMD----PLRTETETDVNGRIAT2G01420-AtPIN4 LLFLFEYRGAKLLIMEQFPE-TGASIVSFKVESDVVSLDGHD----FLETDAEIGNDGKLAT5G15100-AtPIN8 LLFLFELNAARALPSSGA------SLEH--------------------------------AT5G16530-AtPIN5 LLFVLEFRKAGFSSNNIS------------------------------------------AT5G57090-AtPIN2 MLFLFEFRGAKLLISEQFPE-TAGSITSFRVDSDVISLNGRE----PLQTDAEIGDDGKLgene04070 LLFLFEYRGAKLLIMEQFPE-TAASIVSFKVDSDVMSLDGRD----FLETDAEIGDDGKLgene05434 ------------------------------------------------------------gene16792 LLFVLEFRRTGLDISSNDTRV---------------------------------------gene06077 RRFAAVLLHGL---ASPVP-------PSFRLGRSASGL-------GWVRAEIDDGAGGARgene09384 MLFMFEYRGARLLISEQFPD-TAGSIVSIHVDSDIMSLDGRQ----PLETEAEIKEDGKLgene12312 MLIMFEYRGAKLLIAEQFPE-TAGAITSFRVDFDIVSLNGRE----PLQTDAEIGEDGKLgene12314 MLFMFEYRGARLLISEQFPE-TAGSITSFRVDSDVVSLNGRE----PLQTDAEIGEDGKLgene01267 LLFLFEFRAAKAASVTPS------SEA---------------------------------gene00469 MLFLFEYRGARLLIGEQFLD-TAASIIFFRVDSDILSLDGKE----PLQTEAQVGEDGKLOS01G45550 MLFLFEFRAARMLIADQFPDTA-ASIVSLHVDPDVVSLEGGH----AET-EAEVAADGRLOS01G51780 LLFLFELRAANGMATTTS------S-----------------------------------OS01G58860 IIFLYEYMAARRSASAPPPASSEGSAK---------------------------------OS01G69070 LLFVLEVRKAAIGMYVDGAEA---------------------------------------OS02G50960 MLFMFEYRGARMLITEQFPD-TAANIASIVVDPDVVSLDGRR---DAIETETEVKEDGRIOS05G50140 LLFLFEFRAARVLIAAQFPDTA-ASIAAVHVDPDVVSLEGSQ----AEA-HAEVAPDGRLOS06G12610 MLFMFEYRGARILITEQFPD-TAGAIASIVVDADVVSLDGRR---DMIETEAEVKEDGKIOS06G44970 MLFLFEYRGAKALISEQFPPDVGASIASFRVDSDVVSLNGRE----ALQADAEVGRDGRVOS08G41720 LLMAFELRKAWVVGGGGGVGP---------------------------------------OS09G32770 LLLAFEVRRATTAAAA--------------------------------------------OS11G02950 LMVVLEVRKAFVSDAHDESNR--------------------H------------------OS11G04190 MLFLFEYRGARLLVMEQFPD-TAASIVSFRVDSDVVSLAGGGGGAAELQAEAEVGDDGRM

AT1G23080-AtPIN7 HVTVRKSNASRRSFYGGGG------------TNMTPRPSNLTGAEIYSLN----TTPRGSAT1G70940-AtPIN3 HVTVRKSNASRRSFCG---------------PNMTPRPSNLTGAEIYSLS----TTPRGSAT1G73590-AtPIN1 HVTVRRSNASRSDIYSRRS---------QGLS-ATPRPSNLTNAEIYSLQSSRNPTPRGSAT1G77110-AtPIN6 RLRIRRSVSSVPDSVMSS------------SLCLTPRASNLSNAEIFSVNTPNNRFFHGGAT2G01420-AtPIN4 HVTVRKSNASRRSL------------------MMTPRPSNLTGAEIYSLS----STPRGSAT5G15100-AtPIN8 -----------------------------------------TGN----------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 HVVVRRSSAASSMISSFNKSHG----GGLNSSMITPRASNLTGVEIYSVQSSREPTPRASgene04070 HVKVRKSNASRRSL-----------------SAMTPRPSNLTGAEIYSLSSSRNPTPRGSgene05434 ------------------------------------------------------------gene16792 ------------------------------------------------------------gene06077 ------SGLDWSSIRAGS--------WLGKGVACRRAPGSVEEASVL-------------gene09384 HVTVRKSNASRSDIYSRRSH-------SQGLSSNTPRPSNLTNAEIYSLQSSRNPTPRGSgene12312 HVVVRRSST-----SSFV-SHG----WNSMNSDMTPRASNLTGVEIYSIQSSLEPTPRQSgene12314 HVVVKRSAAS-SMVSSFK-SHG----LNSLNSGMTPRASNLTGVEIYSVQSSREPTPRASgene01267 -----------------------------------------TAE----------------gene00469 HVTVRKSSSSRSEIFSKPSLGP------NSGVSCTPRLSNLTNAEIYSLQSSRNPTPRGSOS01G45550 HVTVRRSSVS------RR------------SLLVTPRPSNLTGAEIYSLSSSRNPTPRGSOS01G51780 ------------------------------------------------------------OS01G58860 ---------------------------------ISPSS----------------PVK--AOS01G69070 ------------------------------------------------------------OS02G50960 HVTVRRSNASRSDIYSRRS---------MGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSOS05G50140 RMVVCRSSV----SRRSA------------AAAATPRASNLTGVEIYSISSSRNATPRGSOS06G12610 HVTVRRSNASRSDVYSRRS---------MGFSSTTPRPSNLTNAEIYSLQSSRNPTPRGSOS06G44970 HVVIRRSASASTTGGGGGAARSGVSRAYGASNAMTPRASNLTGVEIYSLQTSREPTPRASOS08G41720 -------------------------------AVMSS------------------------OS09G32770 -----------------------------------P------------------------OS11G02950 --------------------------------------------------------EEGSOS11G04190 RVTVRKSTSSRSEAACSHGT-------QSHSQSMQPRVSNLSGVEIYSLQSSRNPTPRGS

AT1G23080-AtPIN7 NFNHSDF----------YSM-MGFPG--G----RL------SNFGPADMYSV--QSSRGPAT1G70940-AtPIN3 NFNHSDF----------YNM-MGFPG--G----RL------SNFGPADMYSV--QSSRGPAT1G73590-AtPIN1 SFNHTDF----------YSM-MASGG--G----RN------SNFGPGEAVFG----SKGPAT1G77110-AtPIN6 GGSGTLQFYNGSNEIMFCNGDLGGFG--FTRPGLGASPRRLSGYASSDAYS------LQPAT2G01420-AtPIN4 NFNHSDF----------YSV-MGFPG--G----RL------SNFGPADLYSV--QSSRGPAT5G15100-AtPIN8 ---------------------------------------------------------DQEAT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 SFNQTDF----------YAM-FNASKAPSPRHGYTNSYGGAGAGPGGDVYSL--QSSKGV

Page 10: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene04070 NFNPSDF----------YSM-MGVQGFNT----RH------SNFGAGDMYSV--QSSRGPgene05434 ------------------------------------------------------------gene16792 ------------------------------Q-----------------------------gene06077 ------ILFGGGGRRGLQLVLFGEGGCPEKKSGGK-------------------------gene09384 SFNHTDF----------YSM-MAA----G----RN------SNFGSSDVFGGPLTASRGPgene12312 SFNQSEF----------FTM-FNA----SPKHGYTNSFQG-------------------Vgene12314 SFNQTDF----------YAM-FNASKAPSPKHGYTNSFQG----GFGDVYSV--QSSKGVgene01267 ---------------------------------------------------------EMEgene00469 NFSHTDF----------YAM-GYPTPP------ST------RIF----------------OS01G45550 NFNHAD----------FFA--MVGGG--PPPP--TPAAVRGSSFGASELYSL-QSS-RGPOS01G51780 ------------------------------------------------------------OS01G58860 AA---------------AAADTNGNA--------------------------------VAOS01G69070 ------------------------------AAAAG-------------------------OS02G50960 SFNHTDF----------YSM-V------G----RS------SNFGAADAFGV----RTGAOS05G50140 T---------------FTLADIPGHQ--PPNS-----ALRASSFGAADLFSL-HSSSRQHOS06G12610 SFNHTDF----------YSM-V------G----RS------SNFAAGDAFGV----RTGAOS06G44970 SFNQADF----------YAM-FSGSK--M----AS------QMAS-------PMAQHGGAOS08G41720 ----------------------------SSPPEKQ-------------------------OS09G32770 ----------------------------PPPPTGT-------------------------OS11G02950 YID-DDT------------V-VGGSG------------------TSEDMQSL--------OS11G04190 SFNHAEF----------FNI-VGNGK--Q----GD------EEKG---------------

AT1G23080-AtPIN7 TPRPSNFEESCAM---------ASSPRFGYYPG-----GAPGSYPAPNPEFSTGNKTG--AT1G70940-AtPIN3 TPRPSNFEENCAM---------ASSPRFGYYPG-----GGAGSYPAPNPEFSSTTTSTANAT1G73590-AtPIN1 TPRPSNYEEDGGPAKPTAAGTAAGAGRFHYQSGG-SGGGGGAHYPAPNPGMFSPNTGGGGAT1G77110-AtPIN6 TPRASNFNELDVNGNGTPV-----------------------------------------AT2G01420-AtPIN4 TPRPSNFEENNAV-------------KYGFYNNTNSSVPAAGSYPAPNPEFSTGTGVS--AT5G15100-AtPIN8 EA----------------------------------------------------------AT5G16530-AtPIN5 -----D------------------------------------------------------AT5G57090-AtPIN2 TPRTSNFDEEVMKTAKKAGR------GGRSMSGELYNNNSVPSYPPPNPMFTGSTSGASGgene04070 TPRPSNFEENCAPIMA----QTVTSPRFGFYPAQ----TVPSSYPAPNPEFSAPVTKTAAgene05434 ------------------------------------------------------------gene16792 -----S------------------------------------------------------gene06077 -------------------------------SGD--RNPAVGEIPVTGPAVGEISVTGI-gene09384 TPRPSNYEDDGGAAVGAA-AAGSNKPRFHYQGGG-N--NTTAHYPAPNPGMFSPTTAASKgene12312 AQRTSNYEAEMIKMSNK-KR------RVKSMSGELLNAGIASSYPPPNPLFLGSASGGPKgene12314 TPRTSNFDEEMMKISNK-KR------GARSMSGELFNAGAVSSYPPPNPMFSGSTSGGPKgene01267 AP----------------------------------------------------------gene00469 -------------------------------------------SPAAGPA----------OS01G45550 TPRQSNFDEHSARPPKPPA-----------------------------------------OS01G51780 ------------------------------------------------------------OS01G58860 ADRPQEV-----------------------------------------------------OS01G69070 ----KD------------------------------------------------------OS02G50960 TPRPSNYEDDASKPKYPLPAS--------------NAAPMAGHYPAPNPAVSSAPKGAKKOS05G50140 TPRPSSFDEHAAARARASA-----------------------------------------OS06G12610 TPRPSNYEEDAAAPNK--------------------AGSKYGQYPAPNPAMAAPPKPKKAOS06G44970 GGRAQGLDEQV---------------TNKFASG---KAADPPSYPAPNPGMMPAPRKKELOS08G41720 ----SD------------------------------------------------------OS09G32770 ----DD------------------------------------------------------OS11G02950 ------------------------------------------------------------OS11G04190 ------------------------------------AAGGGGHSPQ--------------

AT1G23080-AtPIN7 ---SKAPKE-------NHHHVGKSNSNDAKELHMFVWGSNGSPVSDRAGLQV--------AT1G70940-AtPIN3 KSVNKNPKDVNTNQQTTLPTGGKSNSHDAKELHMFVWSSNGSPVSDRAGLNV--------AT1G73590-AtPIN1 GTAA-------KGN--APVVGGKRQDGNGRDLHMFVWSSSASPVSDV-------------AT1G77110-AtPIN6 -----------------WMKSPAAGRIYRQSSPKMMWESGQRHAAKDI------------AT2G01420-AtPIN4 ----TKPNKIPKENQQQLQEKDSKASHDAKELHMFVWSSSASPVSDVFG-----------AT5G15100-AtPIN8 ------------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 VKKK--------ESGGGGSGGGVGVGGQNKEMNMFVWSSSASPVSEANAKNAMTRGSSTDgene04070 KTNQQPLQ--PQPPPQQVNSNSSKANHDAKELHMFVWSSSNSPVSEAGGLHV--------gene05434 ------------------------------------------------------------gene16792 ------------------------------------------------------------gene06077 ----------------------------------------RRPVTGVRG-------SSQVgene09384 NVVA-------PKRPNGNGPNGP-AQDGGKDLHMFVWSSSASPVSDV-------------gene12312 KKDS--------RGA-ADAGGGSGGAVANKELHMFVWSSSASPVSEGNLKHATNRAASTDgene12314 KKES--------GGTFASAGGGSGGAVPNKELHMFVWSSSASPVSEGNMKHAVNRAASTDgene01267 ------------------------------------------------------------gene00469 ----------------KVKP-NGTDTAAGKDLHMFVWSSSASLVSERGIHV---------OS01G45550 -----------------TTT--GALNHDAKELHMFVWSSSASPVSEVSGLPV--------OS01G51780 ------------------------------------------------------------OS01G58860 -----------------------AVNIE--------------------------------OS01G69070 ------------------------------------------------------------OS02G50960 -----------------AATNGQA---KGEDLHMFVWSSSASPVSDV-------------OS05G50140 -----------------TV----APTNDLKDTHMIEWSSGASAASEVTGLPV--------OS06G12610 -------------------ANGQAKGEDGKDLHMFVWSSSASPVSDV-------------OS06G44970 ---------------------GGSNSNSNKELHMFVWSSSASPVSEANLRNAVNHAASTDOS08G41720 ------------------------------------------------------------OS09G32770 ------------------------------------------------------------OS11G02950 ------------------------------------------------------------OS11G04190 -----------------------PVVGKRKDLHMFVWSSSASPVSERAAAAAAGAV--HV

AT1G23080-AtPIN7 DNGANE---QVGKSDQGGAKEIRMLISDHTQNGENKA--GPMNG-DYGGE----------AT1G70940-AtPIN3 FGGAPD--NDQGGRSDQGAKEIRMLVPDQSHNGETKAVAHPASG-DFGGE----QQFSFAAT1G73590-AtPIN1 FGGGGGNHHADY-STA--TNDHQKDVKISVPQG-------NSND----NQYVEREEFSFGAT1G77110-AtPIN6 ------------NGS----------VP--------------------------EKEISFRAT2G01420-AtPIN4 -GGAGD--NVATEQSEQGAKEIRMVVSDQPRKSNARGGGDDI-----GGL----------AT5G15100-AtPIN8 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT5G16530-AtPIN5 ---------------------------------------VQVDN----------------AT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG------K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFAgene05434 --------------------GNHQLINNTSS-GRKMSGDEVLEI-EEGK------ML---gene16792 ---------------------------------------VELQG----------------gene06077 FSC*--------------------------------------------------------gene09384 FGSNEYGATGHD---Q---KEVKLAVSPGKVEGR-----RENQE----EYMVERDEFSFGgene12312 FEGIDPSKASHDQP-IAGSKGMHQLIHNMSS-GRKMSEDGVLEI-EEGT------MF---gene12314 FGSIDPKASQHDNP-IAGSKGMHELIQNMSP-GRKVNGDGELEI-EEGT------KF---gene01267 ------------------------------------------------------------gene00469 FRGGAAHQKDH--------------------------------------GEFRGDEFSFCOS01G45550 FSGGGG-----GGALDVGAKEIHMVIPADLPQNNGSGKEHEEYGAVALGGGGGGENFSFGOS01G51780 ------------------------------------------------------------OS01G58860 -------------------------ITEMAASTA-------RDG-VSGETTAAAKEVSSGOS01G69070 ---------------------------------------VEAAG----------------OS02G50960 FGGGAPDYNDAA-----------AVKSPRKMDG-------AKDR----EDYVERDDFSFGOS05G50140 FRSGRE-----TRRL----------VPSDAPSIASSRVIRP-----PPGATGGERAASFNOS06G12610 FGNGA-EYNDAA-----------AVKEVRMAVA-------SPRK----ADGVERDDFSFGOS06G44970 FASAPPPAAVPVGGAT--PKGVSGSVTPAAKNGG-----GELEI----EDGLK-----SPOS08G41720 ---------------------------------------VEMNG----------------OS09G32770 ---------------------------------------DDVED----------------OS11G02950 ----EEGVSDATN--------------------------QDLKG----E-----EA----OS11G04190 FGGGGADHGDA-------------------------------------KGAQAYDEYSFG

AT1G23080-AtPIN7 ---------------EESERVKEVPNGLHKLRCNSTAELNPKEAIE-------TGETVPVAT1G70940-AtPIN3 GKE------------EEAERPKDAENGLNKLAPNSTAALQSKTGLG-------GAEASQRAT1G73590-AtPIN1 NKD----------DDSKV-----L-----------------ATDGGNN----ISNKTTQAAT1G77110-AtPIN6 DAL-------------K-----AAPQATAAGGGASMEEG-------AAGKDTTPVAAIGKAT2G01420-AtPIN4 DSG------------EGEREIEKATAGLNKMGSNSTAELEAAGGDG-------GG--NNGAT5G15100-AtPIN8 ----------NIEDEPKEE----------EDEEEVAIVR-----------------TR--AT5G16530-AtPIN5 -----------INIES----------GKRET----------------------VVVGE--AT5G57090-AtPIN2 ---------------------------SPYMG---------KKGSDVE----DGGPGPRKgene04070 GKA----------DQGEEDREKEGPMGFNKLGSSSTAELHPKGVGVGA----DHHESSGGgene05434 -----------------------PASAPPYSSG--------QKKMDME----EA------gene16792 -----------VKDVE----------GLNQS----------------------TVANS--gene06077 ------------------------------------------------------------gene09384 NRV----------VDQMN-----MNEGE-------------------------KGDLNKAgene12312 -----------------------PAIAPPRSGG--------QKKTDME-----GG-AAKKgene12314 -----------------------PASASPYSSC--------QKKMDME----DGG-VAKKgene01267 ----------N-EAQSKDE----------EGG----EER-----------------TR--gene00469 NIP----------ASNGIDRDGPVLSKL--GSSSSTTELHPKTC----------HVESTAOS01G45550 G----GKTVDGAEAV---DEEAALPDGLTKMGSSSTAELHPKVVDVDGPNAGGGAAGAGQOS01G51780 ------------------------------------------------------------OS01G58860 E-------------------------------------V---------------APVEEEOS01G69070 -----------AAAAA----------GTV-V----------------------VAAAA--OS02G50960 NRG----------VMDRD-----AEAGDEKAAAA-------AGAD-------PSKAMAAPOS05G50140 KAVGGQDELAKLEAGAKTEQQTTAVTTTTKGGGAAGAER-----------------ARGQOS06G12610 NRG----------VAERD-----AEAGDEKSVAA-------AVSGEHG----KPGLTPAPOS06G44970 AAG----------LAAKF-----PVSGSPYVAPR-------KKGGGAD----VPGLAEAAOS08G41720 -----------A--------------VVAAP----------------------GGGGG--OS09G32770 --------------------------GAAAA----------------------ATAAA--OS11G02950 ---------------------------V-------------------------TVAGV--OS11G04190 NKN----------EKDGP-----TLSKLGSN----------STAQLRP----KDDGEGMA

AT1G23080-AtPIN7 KHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWDVAMPKIIQQSISILSDAT1G70940-AtPIN3 KNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQSISILSDAT1G73590-AtPIN1 KVMPPTSVMTRLILIMVWRKLIRNPNSYSSLFGITWSLISFKWNIEMPALIAKSISILSDAT1G77110-AtPIN6 QEMPSAIVMMRLILTVVGRKLSRNPNTYSSLLGLVWSLISFKWNIPMPNIVDFSIKIISDAT2G01420-AtPIN4 THMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAYRWHVAMPKILQQSISILSDAT5G15100-AtPIN8 ---S---VGTMKILLKAWRKLIINPNTYATLIGIIWATLHFRLGWNLPEMIDKSIHLLSDAT5G16530-AtPIN5 -------KSFLEVMSLVWLKLATNPNCYSCILGIAWAFISNRWHLELPGILEGSILIMSKAT5G57090-AtPIN2 QQMPPASVMTRLILIMVWRKLIRNPNTYSSLFGLAWSLVSFKWNIKMPTIMSGSISILSDgene04070 KQMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVSFRWHVAMPSIIKGSISILSDgene05434 ------------------------------------------------------------gene16792 -----PSYYYWSLLKGVWLKLGMNPNSYAVFIGIAWAFIANRWHIELPSIMEGSVLIMSKgene06077 ------------------------------------------------------------gene09384 KVMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSYRWHLQMPAIIAKSIAILSDgene12312 QQMPPVSVMSRLIVIMVWRKLIRNPNTYASVFGLVWSLVSYRLHIKMPTIVSNSIEILSNgene12314 QQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVAWSLVSYKWHIKMPTIISGSISILSDgene01267 ---NP--KNMKSILLTVGRKLFANPNTHATLLSLIWASIHFRWGVKMPEIVTQSISIMANgene00469 TAMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFKWNIAMPAIIARSIAILSDOS01G45550 YQMPPASVMTRLILIMVWRKLIRNPNTYSSLLGLAWSLVAFRIVHGAAAQHHRVWQI-SROS01G51780 -----------------------------ETTGLIWALVGFRWHIRLPLIVSNSIRMLSDOS01G58860 EASAPAPSM-KHVIWMAVKKLLQIPNTYASFLGLIWSLIAFKCGFSMPKIVEDSLFTIRTOS01G69070 -----GKPSLWALVKVVAHKLARNPNTYASFVGITWACLANRLHIALPSAFEGSVLIMSKOS02G50960 TAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIVLKSISILSDOS05G50140 QN-APAGVMLRLILTTVWRRLIRNPNTYASLIGLTWSLIAFRFHITMPIIVAKSISILSDOS06G12610 TAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLVCFRWNFEMPAIILKSISILSDOS06G44970 HPMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWNIQMPSIIKGSISILSDOS08G41720 -----VRLPFWATARTVGLKLARNPNVYASVLGVVWACIAYRWHLSLPGIVTGSLQVMSROS09G32770 -----ARRSLWPLVRAVWLKVARNPNVYAGVLGVAWACVTNRWHVETPSIIEGSVLIMSKOS11G02950 ------NGARLPLFKSVARKLACNPNLHASVIGISWACISNRSHLTLPPALEGSVQIMSROS11G04190 AAMPPASVMTRLILIMVWRKLIRNPNTYSSLLGVIWSLVSYRWGIEMPAIIARSISILSD

AT1G23080-AtPIN7 AGLGMAMFSL----------------GLFM------------ALQPKLIACGNSTATFAMAT1G70940-AtPIN3 AGLGMAMFSL----------------GLFM------------ALQPKLIACGNSVATFAMAT1G73590-AtPIN1 AGLGMAMFSL----------------GLFM------------ALNPRIIACGNRRAAFAAAT1G77110-AtPIN6 AGLGMAMFSLG----------------LFM------------ALQPKMIPCGAKKATMGM

Page 12: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT2G01420-AtPIN4 AGLGMAMFSL----------------GLFM------------ALQPKIIACGNSVATFAMAT5G15100-AtPIN8 GGLGMAMFSLG----------------LFM------------ASQSSIIACGTKMAIITMAT5G16530-AtPIN5 AGTGTAMFNM----------------GIFM------------ALQEKLIVCGTSLTVMGMAT5G57090-AtPIN2 AGLGMAMFSL----------------GLFM------------ALQPKIIACGKSVAGFAMgene04070 AGLGMAMFSL----------------GLFM------------ALQPKIIACGNSVAGFAMgene05434 --------------------------GLFM------------ALQPKIIAGGKSLATFAIgene16792 AGTGTAMFSM----------------GIFM------------ALQEKFVACGTSLTIIGMgene06077 ------------------------------------------------------------gene09384 AGLGMAMFSLVVVVVVMMMKALGWCDGLFM------------ALQPRIIACGNSIAAFTMgene12312 TGLGMAMFSL----------------GLFM------------ALQPKMIVCGKSVATFAMgene12314 AGLGMAMFSL----------------GLFM------------ALQPKIIACGKSVATFAMgene01267 GGLGMATFSLG----------------LFM------------ASRPSIIACGARMTMVAMgene00469 TGLGMAMFSL--------------------------------------------------OS01G45550 RRLHGRPLPRG-----------PCRHGRRVNRHRTP------RDAPARRHCSGGSTTRDCOS01G51780 GGLGMAMFSLG----------------LFT------------ALQTKIIACGAKRMLLALOS01G58860 TAVGLSMFSS----------------GTFI------------ARQSRFVPCGYKIASFSMOS01G69070 SGTGMAMFSM----------------GLFM------------AQQEKIIACGTSFAALGLOS02G50960 AGLGMAMFSL----------------GLFM------------ALQPHIIACGNKVATYAMOS05G50140 AGLGMAMFSLG----------------LFM------------ATQPKIIACGYSVAAASMOS06G12610 AGLGMAMFSL----------------GLFM------------ALQPRIIACGNKVATFAMOS06G44970 AGLGMAMFSL----------------GLFM------------ALQPKIISCGKTVATFAMOS08G41720 TGTGMSMFSM----------------GLFM------------GQQERVIACGAGLTALGMOS09G32770 TGVGLSMFSM----------------GLFM------------ALQDKIIVCGAGLTVLGMOS11G02950 SGLGLAMFSMGCNTSVYFI--LHICQGIWIACRRPEYSKTGGARVPVRLICRHGTAWRGAOS11G04190 AGLGMAMFSL----------------GLFM------------ALQPRIIACGNSLASYAM

AT1G23080-AtPIN7 AVRF----FTGPAVMAVAAMAIGLRGDLLRVAIVQ-------------------------AT1G70940-AtPIN3 AVRF----LTGPAVMAVAAIAIGLRGDLLRVAIVQ-------------------------AT1G73590-AtPIN1 AMRF----VVGPAVMLVASYAVGLRGVLLHVAIIQ-------------------------AT1G77110-AtPIN6 LIRF----ISGPLFMAGASLLVGLRGSRLHAAIVQ-------------------------AT2G01420-AtPIN4 AVRF----ITGPAIMAVAGIAIGLHGDLLRIAIVQ-------------------------AT5G15100-AtPIN8 LLKF----VLGPALMIASAYCIRLKSTLFKVAILQ-------------------------AT5G16530-AtPIN5 VLKF----IAGPAAMAIGSIVLGLHGDVLRVAIIQ-------------------------AT5G57090-AtPIN2 AVRF----LTGPAVIAATSIAIGIRGDLLHIAIVQ-------------------------gene04070 AVRF----LTGPAVMAAASIAVGLRGTLLHLAIVQ-------------------------gene05434 VVRF----LIGPAVVAACSIAVGLRGA---------------------------------gene16792 VLRF----IAGPAAMAIGCIAVGLHGDVLRVAIIQ-------------------------gene06077 ------------------------------------------------------------gene09384 AVRF----LTGPAVMAAASIAVGLRGTLLHVAIVQ-------------------------gene12312 AVRF----LIGPAVIAACALAVGLRGVLLHVSILQ-------------------------gene12314 AVRF----LTGPAVIAACSIAVGLRGVLLHVAIVQ-------------------------gene01267 GLKF----LAGPAVMALSSFVIGLRGRALRIAIVQ-------------------------gene00469 -VRF----LAGPAVMAAASLA---------------------------------------OS01G45550 AFCFCKRIQCPPGHPEHSGNFWHANSSSNHIAVLH-------------------------OS01G51780 AIRF----FLGPALMGMSSYAIGMRGVLLKIAIVQ-------------------------OS01G58860 VIKF----LIGPVVMLFASLVIGMHGTLLHIAVVQ-------------------------OS01G69070 VLKF----ALGPAAMAIGSIAVGLRGDVLRVAIIQ-------------------------OS02G50960 AVRF----LAGPAVMAAASFAVGLRGTLLHVAIVQ-------------------------OS05G50140 GVRF----FFGPAIMAAASAAVGIRGTLLRIAIVQ-------------------------OS06G12610 AVRF----LTGPAVMAAASIAVGLRGTLLHVAIVQ-------------------------OS06G44970 AVRF----LTGPAVIAATSIAIGLRGVLLHVAIVQ-------------------------OS08G41720 ALRF----VAGPLATLVGAAALGLRGDVLHLAIIQ-------------------------OS09G32770 ALRF----VAGPAATAVGAFALGLRGDLLRLAIIQAYTHLHEIHSPS--SFFLLSPEICLOS11G02950 TK-------------------GHVRERDLMIGW----VDIGKILSAITLLYFALALGYCSOS11G04190 AVRF----LVGPAVMAAASIAVGLRGVLLHIAIVQ-------------------------

AT1G23080-AtPIN7 --------------------AALPQGIV----PFVFAKEYNVHPAILSTGV--I-----FAT1G70940-AtPIN3 --------------------AALPQGIV----PFVFAKEYNVHPAILSTGV--I-----FAT1G73590-AtPIN1 --------------------AALPQGIV----PFVFAKEYNVHPDILSTAV--I-----FAT1G77110-AtPIN6 --------------------AALPQGIV----PFVFAREYNLHPDLLSTLV--I-----FAT2G01420-AtPIN4 --------------------AALPQGIV----PFVFAKEYNVHPTILSTGV--I-----FAT5G15100-AtPIN8 --------------------AALPQGVV----PFVFAKEYNLHPEIISTGV--I-----FAT5G16530-AtPIN5 --------------------AALPQSIT----SFIFAKEYGLHADVLSTAV--I-----FAT5G57090-AtPIN2 --------------------AALPQGIV----PFVFAKEYNVHPDILSTAV--I-----Fgene04070 --------------------AALPQGIV----PFVFAKEYNVHPAILSTGV--I-----Fgene05434 ---------------------ALPLAIV----PFVFAKEYNVHAEIISTSV--I-----Fgene16792 --------------------AALPQSIT----SFIFAKEYGLHADVLSTAV--I-----Fgene06077 ------------------------------------------------------------gene09384 --------------------AALPQGIV----PFVFAKEYNVHPDILSTGS--S-----Ygene12312 --------------------AALPQGIV----PFVFAKEYNVHAEILSSAV--I-----Fgene12314 --------------------AALPQGIV----PFVFAKEYNVHPDILSTAV--I-----Fgene01267 --------------------AALPQGIV----PFVFAKEYNVHPEILSTAV--I-----Fgene00469 --------------------AALPQGIV----PFVFAKEYNVHPNILSTGV--I-----FOS01G45550 --------------------PSWTMIKKAYGRSHIKRKKWGQRERKKSDPVHLK-----QOS01G51780 --------------------AALPQGIV----PFVFAKEYNVQADILSTAI--I-----VOS01G58860 --------------------AALPLAVT----SFVYAEEYKVHADIMSTGV--I-----LOS01G69070 --------------------AALPQSIT----SFIFAKEYGLHADVLSTAV--I-----FOS02G50960 --------------------AALPQGIV----PFVFAKEYSVHPSILSTAV--I-----FOS05G50140 --------------------AALPQGIV----PFVFAKEYNLHATILCTLV--I-----FOS06G12610 --------------------AALPQGIV----PFVFAKEYSVHPDILSTAV--I-----FOS06G44970 --------------------AALPQGIV----PFVFAKEYNCHPQILSTAV--I-----FOS08G41720 --------------------AALPQSIA----SFVFAKEYGLHADVLSTAV--I-----FOS09G32770 NSNGCMHDTSPHDETARDEQAALPQSIT----TFVFAKEYGLHAEILSTAV--I-----FOS11G02950 SRRWW-------QIFTAEDSEAINRMVVWFAFPF-FTFEFTLHLDPYNVRCSLIAADSIAOS11G04190 --------------------AALPQGIV----PFVFAKEYNVHPNILSTAV--I-----F

AT1G23080-AtPIN7 GMLIA------LPIT---LVYYIL---LGL*-----------------------------AT1G70940-AtPIN3 GMLIA------LPIT---LVYYIL---LGL*-----------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G73590-AtPIN1 GMLIA------LPIT---LLYYIL---LGL*-----------------------------AT1G77110-AtPIN6 GMIVS------LPVT---ILYYVL---LGL*-----------------------------AT2G01420-AtPIN4 GMLIA------LPIT---LVYYIL---LGL*-----------------------------AT5G15100-AtPIN8 GMLIA------LPTT---LAYYFL---LDL*-----------------------------AT5G16530-AtPIN5 GMLVS------LPVL---VAYYAA---LEFIH*---------------------------AT5G57090-AtPIN2 GMLVA------LPVT---VLYYVL---LGL*-----------------------------gene04070 GMLIA------LPIT---LVYYIV---LGL*-----------------------------gene05434 GMLVA------LPVT---IVYYIL---LGLVSGKLRA------FGRYINCTVRTPKSLWAgene16792 GMLVS------LPVL---IGYYAV---LEFVH*---------------------------gene06077 ------------------------------------------------------------gene09384 IRHVD------RV-----AHYTCL---LHFAGAMKNQ--------RILETR---------gene12312 GMLVA------LPVT---IVYYIL---LEL*-----------------------------gene12314 GMLVA------LPIT---ILYYIL---LGL*-----------------------------gene01267 GMLIA------LPVA---LAYYFL---LDI*-----------------------------gene00469 GMLIA------LPIT---LANRTE---VEDQPHVTSI----PSFIRFVNVR---------OS01G45550 RMLICIACCRTLPMMTRQRSCYRAIYLCDICTRDNDRMYSNITDIRYVFC*---------OS01G51780 GMMVA------VPVA---LAYYFA---MIIPAIK*-------------------------OS01G58860 GIFIS------LPVT---IVYYIL---LGL*-----------------------------OS01G69070 GMLVS------LPLL---VGFYIV---LELIR*---------------------------OS02G50960 GMLIA------LPIT---LVYYIL---LGL*-----------------------------OS05G50140 GMLIA------LPIT---LVYYII---LGLL*----------------------------OS06G12610 GMLIA------LPIT---LVYYIL---LGL*-----------------------------OS06G44970 GMLIA------LPIT---ILYYVL---LGI*-----------------------------OS08G41720 GTLIS------LPIL---IAYYAV---LGFV*----------------------------OS09G32770 GTLAS------LPVL---IVYYIV---LGFIR*---------------------------OS11G02950 KLIIV------AAISIGVMLKFRK---EGLCAAVTDW-----------------------OS11G04190 GMLIA------LPIT---LVYYIL---LGL*-----------------------------

AT1G23080-AtPIN7 ------------------------------------------------------------AT1G70940-AtPIN3 ------------------------------------------------------------AT1G73590-AtPIN1 ------------------------------------------------------------AT1G77110-AtPIN6 ------------------------------------------------------------AT2G01420-AtPIN4 ------------------------------------------------------------AT5G15100-AtPIN8 ------------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 ------------------------------------------------------------gene04070 ------------------------------------------------------------gene05434 PSLLWAPKGSIHSCLHWLPL*---------------------------------------gene16792 ------------------------------------------------------------gene06077 ------------------------------------------------------------gene09384 ----------NGFCIQIFEEAASIR-LEVLASKLRRKKEK*-------------------gene12312 ------------------------------------------------------------gene12314 ------------------------------------------------------------gene01267 ------------------------------------------------------------gene00469 ----------GRHWMHWVPPRELHD-LEPP----RHEFERWCCSMLLLIKNVATGGAGMSOS01G45550 ------------------------------------------------------------OS01G51780 ------------------------------------------------------------OS01G58860 ------------------------------------------------------------OS01G69070 ------------------------------------------------------------OS02G50960 ------------------------------------------------------------OS05G50140 ------------------------------------------------------------OS06G12610 ------------------------------------------------------------OS06G44970 ------------------------------------------------------------OS08G41720 ------------------------------------------------------------OS09G32770 ------------------------------------------------------------OS11G02950 -------------CISGFSLASLTNSLVVGMPMARAMYGNWAGQIVVQLSI-----FQAIOS11G04190 ------------------------------------------------------------

AT1G23080-AtPIN7 ------------------------------------------------------------AT1G70940-AtPIN3 ------------------------------------------------------------AT1G73590-AtPIN1 ------------------------------------------------------------AT1G77110-AtPIN6 ------------------------------------------------------------AT2G01420-AtPIN4 ------------------------------------------------------------AT5G15100-AtPIN8 ------------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 ------------------------------------------------------------gene04070 ------------------------------------------------------------gene05434 ------------------------------------------------------------gene16792 ------------------------------------------------------------gene06077 ------------------------------------------------------------gene09384 ------------------------------------------------------------gene12312 ------------------------------------------------------------gene12314 ------------------------------------------------------------gene01267 ------------------------------------------------------------gene00469 CWLASGLI-FGPRKPLTRDQTSLPSS--PPAFA----IPGVASPNP-AA----ACRETTTOS01G45550 ------------------------------------------------------------OS01G51780 ------------------------------------------------------------OS01G58860 ------------------------------------------------------------OS01G69070 ------------------------------------------------------------OS02G50960 ------------------------------------------------------------OS05G50140 ------------------------------------------------------------OS06G12610 ------------------------------------------------------------OS06G44970 ------------------------------------------------------------OS08G41720 ------------------------------------------------------------OS09G32770 ------------------------------------------------------------OS11G02950 VWLTSLVVVLEVRKAFVSDAHDESNSYEEGSFIDDDTVVGSSGTSEDMQSLEEGVSDATNOS11G04190 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G23080-AtPIN7 ------------------------------------------------------------AT1G70940-AtPIN3 ------------------------------------------------------------AT1G73590-AtPIN1 ------------------------------------------------------------AT1G77110-AtPIN6 ------------------------------------------------------------AT2G01420-AtPIN4 ------------------------------------------------------------AT5G15100-AtPIN8 ------------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 ------------------------------------------------------------gene04070 ------------------------------------------------------------gene05434 ------------------------------------------------------------gene16792 ------------------------------------------------------------gene06077 ------------------------------------------------------------gene09384 ------------------------------------------------------------gene12312 ------------------------------------------------------------gene12314 ------------------------------------------------------------gene01267 ------------------------------------------------------------gene00469 KSLL-------SSFSTKPSPQFAQASTHEGNRRRRCAAVFRRILEIPATSRRVDGRFVLROS01G45550 ------------------------------------------------------------OS01G51780 ------------------------------------------------------------OS01G58860 ------------------------------------------------------------OS01G69070 ------------------------------------------------------------OS02G50960 ------------------------------------------------------------OS05G50140 ------------------------------------------------------------OS06G12610 ------------------------------------------------------------OS06G44970 ------------------------------------------------------------OS08G41720 ------------------------------------------------------------OS09G32770 ------------------------------------------------------------OS11G02950 QDLRGEEAVSVAVVNGARLPLFKSV----ARRTSLCHQLWRGR-----------------OS11G04190 ------------------------------------------------------------

AT1G23080-AtPIN7 ------------------------------------------------------------AT1G70940-AtPIN3 ------------------------------------------------------------AT1G73590-AtPIN1 ------------------------------------------------------------AT1G77110-AtPIN6 ------------------------------------------------------------AT2G01420-AtPIN4 ------------------------------------------------------------AT5G15100-AtPIN8 ------------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 ------------------------------------------------------------gene04070 ------------------------------------------------------------gene05434 ------------------------------------------------------------gene16792 ------------------------------------------------------------gene06077 ------------------------------------------------------------gene09384 ------------------------------------------------------------gene12312 ------------------------------------------------------------gene12314 ------------------------------------------------------------gene01267 ------------------------------------------------------------gene00469 RPALFVLQRSFTTPTTLAIFFCGDVEPRLSLGKEVILNSCYGREEVLGEISWRWKSWLGSOS01G45550 ------------------------------------------------------------OS01G51780 ------------------------------------------------------------OS01G58860 ------------------------------------------------------------OS01G69070 ------------------------------------------------------------OS02G50960 ------------------------------------------------------------OS05G50140 ------------------------------------------------------------OS06G12610 ------------------------------------------------------------OS06G44970 ------------------------------------------------------------OS08G41720 ------------------------------------------------------------OS09G32770 ------------------------------------------------------------OS11G02950 ---------------------------------------C*-------------------OS11G04190 ------------------------------------------------------------

AT1G23080-AtPIN7 ------------------------------------------------------------AT1G70940-AtPIN3 ------------------------------------------------------------AT1G73590-AtPIN1 ------------------------------------------------------------AT1G77110-AtPIN6 ------------------------------------------------------------AT2G01420-AtPIN4 ------------------------------------------------------------AT5G15100-AtPIN8 ------------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------------AT5G57090-AtPIN2 ------------------------------------------------------------gene04070 ------------------------------------------------------------gene05434 ------------------------------------------------------------gene16792 ------------------------------------------------------------gene06077 ------------------------------------------------------------gene09384 ------------------------------------------------------------gene12312 ------------------------------------------------------------gene12314 ------------------------------------------------------------gene01267 ------------------------------------------------------------gene00469 KALICLSSNDEEDQSDIPKALFGCIYHLIVTHDCMPGMTGAHLIIMIKPPPSFIATIQEYOS01G45550 ------------------------------------------------------------OS01G51780 ------------------------------------------------------------OS01G58860 ------------------------------------------------------------OS01G69070 ------------------------------------------------------------OS02G50960 ------------------------------------------------------------OS05G50140 ------------------------------------------------------------OS06G12610 ------------------------------------------------------------OS06G44970 ------------------------------------------------------------OS08G41720 ------------------------------------------------------------OS09G32770 ------------------------------------------------------------OS11G02950 ------------------------------------------------------------OS11G04190 ------------------------------------------------------------

Page 15: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G23080-AtPIN7 ------------------------------------------------------AT1G70940-AtPIN3 ------------------------------------------------------AT1G73590-AtPIN1 ------------------------------------------------------AT1G77110-AtPIN6 ------------------------------------------------------AT2G01420-AtPIN4 ------------------------------------------------------AT5G15100-AtPIN8 ------------------------------------------------------AT5G16530-AtPIN5 ------------------------------------------------------AT5G57090-AtPIN2 ------------------------------------------------------gene04070 ------------------------------------------------------gene05434 ------------------------------------------------------gene16792 ------------------------------------------------------gene06077 ------------------------------------------------------gene09384 ------------------------------------------------------gene12312 ------------------------------------------------------gene12314 ------------------------------------------------------gene01267 ------------------------------------------------------gene00469 LKSNIKGLVRQCSWTDQLFFEKSLGDGRVGLENAKISKDDLLSLAKKDDKSYP*OS01G45550 ------------------------------------------------------OS01G51780 ------------------------------------------------------OS01G58860 ------------------------------------------------------OS01G69070 ------------------------------------------------------OS02G50960 ------------------------------------------------------OS05G50140 ------------------------------------------------------OS06G12610 ------------------------------------------------------OS06G44970 ------------------------------------------------------OS08G41720 ------------------------------------------------------OS09G32770 ------------------------------------------------------OS11G02950 ------------------------------------------------------OS11G04190 ------------------------------------------------------

ARF genes

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ------------------------------------------------------------gene16844 ------------------------------------------------------------gene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 MKRYRNGEIWDFEQQMPLSDDACDVILGLDGGTTSTVCICMPVLPFSDPLPDPVPVLARAgene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------

Page 16: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ------------------------------------------------------------gene16844 ------------------------------------------------------------gene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 VAGCSNHNSVGEAAARETLEQVMAEALAKSGSNRSAVRAVCLAVSGVNHPSDQQRIMDWLgene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ------------------------------------------------------------gene16844 ------------------------------------------------------------gene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 RDIFPRDVRLYVQNDAVAALACGTMGKLHGCVLIAGTGTIAYGFTEDGRNARAAGAGPTLgene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ------------------------------------------------------------gene16844 ------------------------------------------------------------gene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ---------------------------------------------MLGL-----------gene22728 GDWGSGYGIAAQALTAIIRAHDGRGPKTALTSSILEKLDLSSADELIGWTYADPSWARIAgene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 -------------------------------------MEETCE-----------------gene16844 --------MSEAESIKTSS-----------SVTRQVRTSDAPHPSLPSHHHLPLTPGQNIgene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------VQTPEKERTATTT-----------TVAEGVKD------------SFNFSHGDCVgene22728 ALVPEVVSCAEAGDEVANKILFDSVEELGLSVKAVVQRLDLCGPE--GRDSFPLVMVG--gene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 -------------TEKRRRDG-----------PDR-------------------------gene16844 ADPH--------------F--------PPTSLPGASLHLPGLPANPAHHEIACHSTYYSPgene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 DEPRSIVLLLDLATTRPWKKPTT---SSPTRRPSPRRIIPSLQLG-----------EFLPgene22728 ---------GVLEANKRWDIGTEVIRCISKEYPGAVPIRPKMPILDTVIGFACKSISVYSgene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 -----------------------------------------------IPTRVNP-GNVRLgene16844 QYLKVMRLSSDLGV---------------------------------------------Sgene30394 ----------------------------------------------------------MEgene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 DFS-------DDGP---------------------------------------------Pgene22728 DV---KEMLASDGKCPSRALLLCEREKILLTACLKTLSSSDKEIRAKMAKRGNSGGQNREgene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 --------------------------MG-YKGHISDEEAA-----AS----DGFQSAHESgene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 PVLTFVVNGTRGRSKWGWWFIERSGSFQEVKTST----RLKTHALVGVPFDAKLVMGRRAgene16844 PNFVFIKGSWREKRKLSVFRSDYIWLMNATNTKTGIRRGA-----DR----EKIQSHFEEgene30394 FELDWIISDERLDNKWN---NENCWIFE---------------ESDRVPYIIQIEEDR--gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 ------------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------SSGWSRP---------AEWFSERFSSL-------------E----EKF------gene22728 SGLEFGRSPQSTPNKYFELLLPQAYIFHSQIGASGFHVTLTSLKLRALPYFINSQLTF--gene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------MMASLSCV------EDKMKTSCLVAT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ----------------------------------------------------MAAS----AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 -----------------------------M-----GGLIDLNVME---TEEDETQTQTP-AT2G46530-AtARF11 --------------------MSQTSLEPLI-----ISIIKLQILQL---WLKLIAV----AT3G61830-AtARF18 --------------------------------------------------MASVEG----AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------MEFDLNTEIAE-VEEEENDDVGVGAT5G62000-AtARF2 ----------------------------------------MASSEV---SMKGNRGGDN-gene06434 ----------------------------------------MTSSEV---SIKDNGGNQRGgene28545 ------------------------------------MEFDLNHAVVG-DVVEKNAYCN--gene16050 DS--DGEDVGPFKA--YQVMLHP--IAGVSEWEPIERKIAPPLYRRQPGRQKKNR-----gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 KGRRGGGGEPELEIGFYRILRNRVSFKFWK-----EYGTKLSLVRVR-G-ERVIMEEKMRgene16844 GERVSGSELVKVKKTKIGLLLVGLYISFLI-----E---KILLYMRKVNAAMNSM-----gene30394 ----------------------PCSL--KM-----DD-----IYHV--------------gene29771 -----------------------------M-----AGLIDLNSTT---EEEEETPSSGS-gene23072 ---------------------------------------------MSPNSQRHTC-----gene12224 ------------------------------------------------------------gene29255 --------------------------------------------------MALQAS----gene02234 ---------------------------------------------MSPTSQRHTR-----gene25123 --------------------------------------------------MAHQAG----gene09733 GGLWTGSVSWKYETEGFEILIVSLPVKEHLVRARREGNLQILITLK---KKKDFE-----gene22728 ----------------------LVTVQFLR-----SG-----LFRV--S-AQVGKGVALGgene19138 ------------------------------------MAACITVLSF---WMAHSQC----gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 -----------------------------MKA----PSNGFLPS------SNEGEKKPINAT1G19850-AtARF5 NGGGTITTTTS-----------QSTLLEEMKLLK-----------D----QSGTRKPVINAT1G30330-AtARF6 -----------------------------MRL----SSAGFNPQP----HEVTGEKRVLNAT1G34170-AtARF13 -----------------------------------MENNGEMNAQPELS--VDITKTYMYAT1G34310-AtARF12 -----------------------------------MESGNVVNAQPELSGIIDGSKSYVYAT1G34390-AtARF22 -----------------------------------MESGNIVNAQPELSGIIDGSKSYMYAT1G34410-AtARF21 -----------------------------------MESGNIVNAQPKLSGIIDGSKSYMYAT1G35240-AtARF20 -----------------------------------METGNVVNAQPELSGIIDGSKSYMYAT1G35520-AtARF15 -----------------------------------METGNVVNAQPELSGIIDRSKSYMYAT1G35540-AtARF14 -----------------------------------MESGNVVNTQPELSGIIDGSKSYMYAT1G43950-AtARF23 -----------------------------------MESGNVVNVQSELSGIIDGSKSYMYAT1G59750-AtARF1 ----------------------------------------NH----SSGKPGGVLSDALCAT1G77850-At1g77850 ---------------------------------MSPP--SA--------TAGDINHREVDAT2G28350-AtARF10 ----------------------------------------------------MEQEKSLDAT2G33860-AtARF3 -----SS-------------------ASG---SVSPTS---SSSASVSVVSSNSAGGGVCAT2G46530-AtARF11 ----------------------------------------GW--------NLGSNDDELYAT3G61830-AtARF18 ----------------------------------------DDD---FGSSSSRSYQDQLYAT4G23980-AtARF9 --------------------------------------------------MANRGGEYLY

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT4G30080-AtARF16 -----------------------------MINVMNP--------------MKGGTEKGLDAT5G20730-AtARF7 -----------------------------MKA---PSSNGVSPN------PVEGERRNINAT5G37020-AtARF8 -----------------------------MKL----STSGLG-------QQGHEGEKCLNAT5G60450-AtARF4 VGGGTRI-------------------DKGR-LGISPSSSSSCSSGSSSSSSSTGSASSIYAT5G62000-AtARF2 --------FSS-SG--------FSDPKETRNVSVAGEGQKSNSTRSAAAERALDPEAALYgene06434 GGGGGERESFS-SS--------FSDHNDGRN---AGEGQNGHS---AVPAAGRDAETALYgene28545 ----GDC-------------------DKGGCAHCLSSSTSSCSS----NSSSPPVVSSMYgene16050 --------------------------TKGLGETAPPP--GTEKLPRSFYSRVSCGTCNQRgene12917 -----------------------------MKA----PTNGFLAT------SVEGEQKNINgene31631 -------------------------------------------------MSGGAEKKCLNgene27792 -----------------------------MASSISGE---QQS--ACPVNNRQGGKDDLDgene08492 VGGGLL--SGA-----------QSSILEEMKLLK-----------EL-QDHSGS-RKAINgene16844 -----------------------------AVMMMVV------------AEVQKQMEKTLDgene30394 --HSCRFIPTGSPCATKIAHYF--LIHCKMRL----SSAGFSP------QPQEGEKRVLNgene29771 -----S---------------------------------------SNSSGSNGLISGSVCgene23072 --------------------------SRSHSHSHAPP--QP--QPQLISI---------Dgene12224 -----------------------------MKQ---PANGGSAGVPALNSGEGGESVKIINgene29255 ----------------------------------------NH----PSGTSRPGTSDALFgene02234 --------------------------SRSHSHSHAPP--QPQPQPQLVSI---------Dgene25123 ----------------------------------------SYS--QP--NIFDKGADVLYgene09733 -----------------------------MITFMDA------------KEKLKEGEKCLDgene22728 VGGGLGFTAFSDACFVQGLEFAFSGFRIRMRLSSSSSSSGFNNH-----QPQEGEKKCLNgene19138 ----------------------------------------DSS--SVSRGGDTGYGSALYgene23280 -----------------------------------M------------KNNNNHSEKGLD

AT1G19220-AtARF19 SQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQ--TD-FIPNYPNLPSKLICLLAT1G19850-AtARF5 SELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRS--ATTQVPNYPNLPSQLMCQVAT1G30330-AtARF6 SELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKE--VDAHIPNYPSLHPQLICQLAT1G34170-AtARF13 EKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDE--LDHIRPIF-DLPSKLRCRVAT1G34310-AtARF12 EQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREE--LNELQPIC-DLPSKLQCRVAT1G34390-AtARF22 EQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREE--LNELKPIC-DLPSKLQCRVAT1G34410-AtARF21 EQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREE--LNELQPIC-DLPSKLQCRVAT1G35240-AtARF20 EQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREE--LNELQPIC-DLPSKLQCRVAT1G35520-AtARF15 EQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREE--LNELQPIC-DLPSKLQCRVAT1G35540-AtARF14 EQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREE--LNELQPIC-DFPSKLQCRVAT1G43950-AtARF23 EQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREE--LNELQPNC-DLPSKLQCRVAT1G59750-AtARF1 RELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQG--LEQQMPSF-NLPSKILCKVAT1G77850-At1g77850 PTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTL-----PSS-----TSPVPCIIAT2G28350-AtARF10 PQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDF--------HA-PRVPPLILCRVAT2G33860-AtARF3 LELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDF---------SAAIY-GLPPHVFCRIAT2G46530-AtARF11 TELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQG-VVDQEIPVF-NLPPKILCRVAT3G61830-AtARF18 TELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQG-INSEEIPVF-DLPPKILCRVAT4G23980-AtARF9 DELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQ-QVDLNTMKPLF-VLPPKILCNVAT4G30080-AtARF16 PQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDF--------GNLP-IPPMVLCRVAT5G20730-AtARF7 SELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQ--TD-FIPSYPNLPSKLICMLAT5G37020-AtARF8 SELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKE--VDGHIPNYPSLPPQLICQLAT5G60450-AtARF4 SELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMV-SYS--SPLEIPKF-DLNPQIVCRVAT5G62000-AtARF2 RELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQA--AEQQMPLY-DLPSKLLCRVgene06434 TELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQV--ADQQMPVY-DLPPKILCRVgene28545 LELWHACAGPLISLPKKGNVVVYFPQGHLEQVASSYPPL--SSMDMPHF-DLQPQIICKVgene16050 GHNARSCARRNQVVNE---N-VGMEQENVQEQVPQQNPT-----SSMPNLD-NH-IINENgene12917 SELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKE--TD-FIPNYPNLPSKLICMLgene31631 SELWHACAGPLVSLPTSGTRVVYFPQGHSDQVAATTNKQ--VDAHIPNYPSLPPQLICQLgene27792 TQLWHTCAGSNIYVPRPGDKVFYIAQGHIEQVEAYADTD--SNSAMPKY-NLPPKILCHVgene08492 SELWHACAGPLVCLPQVGSLAYYFPQGHSEQVAVSTKRI--ATSQIPNYPNLPSQLLCQVgene16844 PQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQTHVDF--------PASVRIPSLILCRVgene30394 SELWHACAGPLVCLPAVGSRVVYFPQGHSEQVTASTNME--VDSHIPNHPSLPPQLICQLgene29771 LELWHACAGPLISLPKKGSVVVYLPQGHLEQVSDF---------PASVY-DLPAHLFCRVgene23072 PKIWRACAGNSVTIPALHSRVYYFPQGHLEHYTSGSSHV-----LLFPQVLSKPLILCRIgene12224 PELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASMKKD--VDAQIPNYPNLPSKLLCLLgene29255 KELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQI--SEQQMPSF-NLPSKILCKVgene02234 PKIWRACAGNSITIPTLHSRVYYFPQGHLEHSTSASSPV-----LLSPQVLSRPLILCRVgene25123 PELWKACAGPLVEVPRLKERVFYFPQGHMEQLEASTTTNPEANQVIPRF-NLPSKILCQVgene09733 PQLWHACAGGMVQMPLVNAKVFYFPQGHAEHACGPVDF--------RNYPRVPPYILCRVgene22728 SELWHACAGPLVSLPALGSRVVYFPQGHSEQVAASTNKE--VDAHIPNYPNLPPQLICQLgene19138 TELWKLCAGPLVDVPRIGERVFYFPQGHMEQLEASTNQE-LN-PQIPRF-NIPSKILCQVgene23280 SQFWHACAGGMVQLPPINSKVFYFPQGHAEYAQGNVDF--------GNS-RIPALILSRI . ** : : : . : :

AT1G19220-AtARF19 HSVTLH--------------ADTETDEVYAQMTLQPVNKYDREALLA----------SDMAT1G19850-AtARF5 HNVTLH--------------ADKDSDEIYAQMSLQPVHSER--DVFP--------VPDFGAT1G30330-AtARF6 HNVTMH--------------ADVETDEVYAQMTLQPLNAQEQKDPYL---------PAELAT1G34170-AtARF13 VAIDRK--------------VDKNTDEVYAQISLMPDTT-----EV---------MTHNTAT1G34310-AtARF12 IAIHLK--------------VENNSDETYAEITLMPDTT-----QV---------VIPTQAT1G34390-AtARF22 IAIQLK--------------VENNSDETYAEITLMPDTT-----QV---------VIPTQAT1G34410-AtARF21 IAIHLK--------------VENNSDEIYAEITLMPDTT-----QV---------VIPTQAT1G35240-AtARF20 IAIHLK--------------VENNSDETYAEITLMPDTT-----QV---------VIPTQAT1G35520-AtARF15 IAIHLK--------------VENNSDETYAKITLMPDTTVSENLQV---------VIPTQAT1G35540-AtARF14 IAIQLK--------------VENNSDETYAEITLMPDTT-----QV---------VIPTQAT1G43950-AtARF23 IAIHLK--------------VENNSDETYVEITLMPDTT-----QV---------VIPTEAT1G59750-AtARF1 INIQRR--------------AEPETDEVYAQITLLPELDQS-EPTS----------PDAPAT1G77850-At1g77850 TSIQLL--------------ADPVTDEVFAHLILQPMTQQQFTP------TNYSRFGRFDAT2G28350-AtARF10 VSVKFL--------------ADAETDEVFAKITLLPLPGNDLDLENDAVLGL--TPPSSDAT2G33860-AtARF3 LDVKLH--------------AETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEED-YAT2G46530-AtARF11 LSVTLK--------------AEHETDEVYAQITLQPEEDQS-EPTS----------LDPPAT3G61830-AtARF18 LDVTLK--------------AEHETDEVYAQITLQPEEDQS-EPTS----------LDPPAT4G23980-AtARF9 MNVSLQ--------------AEKDTDEVYAQITLIPVGTEVDEPMSP--------DPSP-AT4G30080-AtARF16 LAIKYM--------------ADAESDEVFAKLRLIPLKDDEYVDHEYGDGED--S----NAT5G20730-AtARF7 HNVTLN--------------ADPETDEVYAQMTLQPVNKYDRDALLA----------SDMAT5G37020-AtARF8 HNVTMH--------------ADVETDEVYAQMTLQPLTPEEQKETFV---------PIELAT5G60450-AtARF4 VNVQLL--------------ANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNAT5G62000-AtARF2 INVDLK--------------AEADTDEVYAQITLLPEANQDENAIE----------KEAP

Page 21: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene06434 INVQLK--------------AEPDTDEVFAQVTLLPEPNQDESAVE----------KITPgene28545 VNVQLL--------------ANKENDEVYTHVTLLPQTKLVGQNLEGKELEELGMDEG-Dgene16050 ENVNLNVNINTTPESGTHNVVQPNSQIPYSLGGSEGLARG-FKPRQS--PRLAAKSGTSTgene12917 HNVTLH--------------ADTETDEVYAQMTLQPVNKYDKEAILA----------SDMgene31631 HNVTMH--------------ADVETDEVYAQMTLQPLTPQEQKETFL---------PMELgene27792 VNVQLK--------------AEVHTDEVFAQITLLPVTEQDQLSLE-----------DENgene08492 QNVTLH--------------ADKETDEIFTQMCLKPVNSEK--DVFP--------VPDFGgene16844 AGIRYM--------------ADPETDEVLARIRLVPSETNELYNDE-GPV----D----Sgene30394 HNVTMH--------------ADVETDEVYAQMTLQPLNPQEQKDGYL---------PAGLgene29771 LDVKLH--------------AESGSDEVYAQVQLVPESEEFEHKLGERETV-ADGDED-Agene23072 PVVNFL--------------ANPSTDEVFAKLLLHPVHPS-LSPHHIELNVAAAPLKVAEgene12224 HSVTLH--------------ADPETDEVYAQMTLQPVTSFDKEALLR----------SDLgene29255 VNVQLR--------------AEPDTDEVYAQVTLLPETDQS-EVTS----------PDPPgene02234 AAVKFL--------------ADPTTDEVFAKLLLHPVHPG-LSPHHRELSAAAT----EEgene25123 MHVQLL--------------AEQDTDEVYAQITLIPEANQFKEPTSP--------DPDECgene09733 SAIKFM--------------ADPETDEVYAKIRLVPLSSSEAGYEDNGIGGI-------Ngene22728 HNVTMH--------------ADVETDEVYAQMTLQPLSPQEQKDVYL--------MPAELgene19138 VNIQLL--------------PERDTDEVYAQITLLPEPDQS-EPTS----------PDPCgene23280 SAIRYM--------------ADPETDEVYAKMRLVPVRERGFDFEDDGVVGN--N----N : : .:

AT1G19220-AtARF19 GLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTAT1G19850-AtARF5 MLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENAT1G30330-AtARF6 G-VPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNAT1G34170-AtARF13 TMDTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQAT1G34310-AtARF12 NENQFRPLVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNAT1G34390-AtARF22 NENQFRPLVNSFTKVLTASDT--SGGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNAT1G34410-AtARF21 SENRFRPLVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNAT1G35240-AtARF20 SENQFRPLVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPL----PLPAQELLAKDLHGNAT1G35520-AtARF15 NENQFRPLVNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNAT1G35540-AtARF14 NQNQFRPLVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNAT1G43950-AtARF23 NENQFRPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNAT1G59750-AtARF1 VQEPEKCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSAT1G77850-At1g77850 GDVDDNNKVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAAT2G28350-AtARF10 GNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGEAT2G33860-AtARF3 EVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLAT2G46530-AtARF11 LVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYAT3G61830-AtARF18 IVGPTKQEFHSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFAT4G23980-AtARF9 -PELQRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYAT4G30080-AtARF16 GFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDAT5G20730-AtARF7 GLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNAT5G37020-AtARF8 G-IPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVAT5G60450-AtARF4 GSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVAT5G62000-AtARF2 LPPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANgene06434 PLPPPRFQVHSFCKTLTASDTSTHGGFSVLRRHADECLPQLDMSRQPPTQELVAKDLHGNgene28545 GGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVgene16050 QNSENDDKVVSFAKILTPSEANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLSVTDLHGVgene12917 GLKQSRQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPAQELVAKDLHDSgene31631 G-VPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDVgene27792 APSLPHRTRTYFSKILTPSDTSTHGGFSVPKRHAEDFFPPLDLFQQPPVQELTAKDLHGVgene08492 L-KPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDFTMQPPTQELVVRDLHDNgene16844 DGSDNQEKSSSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGEgene30394 G-SPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNgene29771 EGSEKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLgene23072 VESENDDDIRVS-----------GGRVFLTRFVKRAGSGRFQAGLRPA------------gene12224 ALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPSLDFNMQPPAQEIVARDLHDTgene29255 LPETPHCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNgene02234 VESENDDRVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNYQAEPPVQTLSVTDLHGVgene25123 LSEPERPKVYSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELVAKDLHGYgene09733 G-ADSQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGEgene22728 G-NPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNgene19138 VPEPPTPATYSFCKILTASDTSTHGGFSVLRKHANDCLPPLDMNQATPTQELAAKDLHGYgene23280 GVQENPEKPSSFAKTLTQSDANNGGGFSVPRFCAETIFPRLDYSADPPVQTILAKDVHGE * . : :

AT1G19220-AtARF19 TWTFRHIYRGQPKRHLLT--TGWSVFVSTKRLFAGDSVLFVRDEK-SQLMLGIRRANRQTAT1G19850-AtARF5 TWTFRHIYRGQPKRHLLT--TGWSLFVGSKRLRAGDSVLFIRDEK-SQLMVGVRRANRQQAT1G30330-AtARF6 EWKFRHIFRGQPKRHLLT--TGWSVFVSAKRLVAGDSVLFIWNDK-NQLLLGIRRANRPQAT1G34170-AtARF13 EWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGEN-GELRFGIRRAKHQQAT1G34310-AtARF12 QWRFNHNYRGTPQRHLLT--TGWNAFTTSKKLVAGDVIVFVRGET-GELRVGIRRARHQQAT1G34390-AtARF22 QWRFNHNYRGTPQRHLLT--TGWNAFTTSKKLVAGDVIVFVRGET-GELRVGIRRAGHQQAT1G34410-AtARF21 QWRFRHNYRGTPQRHSLT--TGWNEFITSKKLVKGDVIVFVRGET-GELRVGIRRARHQQAT1G35240-AtARF20 QWRFRHSYRGTPQRHSLT--TGWNEFTTSKKLVKGDVIVFVRGET-GELRVGIRRARHQQAT1G35520-AtARF15 QWSFRHSYRGTPQRHLLT--TGWNEFTTSKKLVKGDVIVFVRGET-GELRVGIRRARHQQAT1G35540-AtARF14 QWRFRHIYRGTAQRHLLT--IGWNAFTTSKKLVEGDVIVFVRGET-GELRVGIRRAGHQQAT1G43950-AtARF23 QWRFKHSYRVPR---GDT--TGWNAFTTSKKLVVGDVIVFARGET-GELRVGIR*-----AT1G59750-AtARF1 EWHFRHIFRGQPRRHLLT--TGWSVFVSSKKLVAGDAFIFLRGEN-EELRVGVRRHMRQQAT1G77850-At1g77850 VWDFRHIYRGTPRRHLLT--TGWSKFVNSKKLIAGDSVVFMRKSA-DEMFIGVRRTPISSAT2G28350-AtARF10 TWKFRHIYRGTPRRHLLT--TGWSTFVNQKKLIAGDSIVFLRSES-GDLCVGIRRAKRGGAT2G33860-AtARF3 EWRFRHIYRGQPRRHLLT--TGWSAFVNKKKLVSGDAVLFLRGDD-GKLRLGVRRASQIEAT2G46530-AtARF11 EWRFKHIFRGQPRRHLLT--TGWSTFVTSKRLVAGDAFVFLRGET-GDLRVGVRRLAKQQAT3G61830-AtARF18 EWRFKHIFRGQPRRHLLT--TGWSTFVSSKRLVAGDAFVFLRGEN-GDLRVGVRRLARHQAT4G23980-AtARF9 QWKFKHIFRGQPRRHLLT--TGWSTFVTSKRLVAGDTFVFLRGEN-GELRVGVRRANLQQAT4G30080-AtARF16 VWKFRHIYRGTPRRHLLT--TGWSNFVNQKKLVAGDSIVFMRAEN-GDLCVGIRRAKRGGAT5G20730-AtARF7 TWTFRHIYRGQPKRHLLT--TGWSVFVSTKRLFAGDSVLFIRDGK-AQLLLGIRRANRQQAT5G37020-AtARF8 EWKFRHIFRGQPKRHLLT--TGWSVFVSAKRLVAGDSVIFIRNEK-NQLFLGIRHATRPQAT5G60450-AtARF4 EWKFRHIYRGQPRRHLLT--TGWSIFVSQKNLVSGDAVLFLRDEG-GELRLGIRRAARPRAT5G62000-AtARF2 EWRFRHIFRGQPRRHLLQ--SGWSVFVSSKRLVAGDAFIFLRGEN-GELRVGVRRAMRQQgene06434 EWRFRHIFRGQPRRHLLQ--SGWSVFVSSKRLVAGDAFIFLRGEN-GELRVGVRRAMRQQgene28545 EWRFRHIYRGQPRRHLLT--TGWSIFISQKNLVSGDAVLFLRGEN-GELRLGIRRAVRPRgene16050 VWDFRHIYRGTPRRHLLT--TGWSKFVNSKMLVAGDSVVFMRSSRGGEMYVGQV------gene12917 AWTFRHIYRGQPKRHLLT--TGWSVFVSTKRLFAGDAVLFIRDEK-SQLLLGIRRANRQQgene31631 EWKFRHIFRGQPKRHLLT--TGWSVFVSAKRLVAGDSVLFIWNEK-NQLLLGIRRATRPQgene27792 QWHFRHIYRGQPKRHLLT--SGWSTFVTAKKLVPGDVCIFVRGEN-GELRVGIRRATKTQ

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene08492 TWTFRHIYRGQPKRHLLT--TGWSLFVGTKRLKAGDSVLFIRDEK-SQLLVGIRRANRQQgene16844 VWKFRHIYRGTPRRHLLT--TGWSTFVNQKKLVAGDSIVFLRSEN-GDLCVGIRRAKRGLgene30394 EWKFRHIFRGQPKRHLLT--TGWSVFVSAKRLVAGDSVLFIWNEK-NQLLLGIRRANRPQgene29771 EWRFRHIYRGQPRRHLLT--TGWSAFVNKKKLVSGDAVLFLRGED-GELRLGVRRAAQVKgene23072 GQIARPIYEGT*------------------------------------------------gene12224 VWTFRHIYRGQPKRHLLT--TGWSLFVSGKRLFAGDAVLFIRDEK-QQLLLGIRRANRQPgene29255 EWHFRHIFRGE---------------------------------T-GELRVGVRRLMRQPgene02234 VWDFRHIYRGTPRRHLLT--TGWSKFVNSKMLVAGDSVVFMRNSGGGEMYVGVRRTVRASgene25123 EWRFKHIFRGQPRRHLLT--TGWSTFVTSKRLSAGDSFVFLRGDN-GDLRVGIRRLARQQgene09733 TWKFRHIYRGTPRRHLLT--TGWSTFVNHKKLVAGDSIVFLRAEN-GDLCVGIRRAKR-Ggene22728 EWKFRHIFRGQPKRHLLT--TGWSVFVSAKRLVAGDSVLFIWNEK-NQLLLGIRRANRPQgene19138 EWKFKHIFRGQPRRHLLT--TGWSTFVTSKRLVAGDAFVFLRGGN-GELGVGVRRLARQQgene23280 IWKFRHIYRGTPRRHLLT--TGWSNFVNNKKLVAGDAIVFFRAEN-GDLCVGIRRAKR-G . :.

AT1G19220-AtARF19 PTLSSSV--------------------ISS------------------------------AT1G19850-AtARF5 TALPSSV--------------------LSA------------------------------AT1G30330-AtARF6 TVMPSSV--------------------LSS------------------------------AT1G34170-AtARF13 GHIPSSV--------------------ISA------------------------------AT1G34310-AtARF12 GNIPSSI--------------------VSI------------------------------AT1G34390-AtARF22 GNIPSSI--------------------ISI------------------------------AT1G34410-AtARF21 GNIPSSI--------------------VSI------------------------------AT1G35240-AtARF20 GNIPSSI--------------------VSI------------------------------AT1G35520-AtARF15 GNIPSSI--------------------VSI------------------------------AT1G35540-AtARF14 GNIPSSI--------------------VSI------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 TNIPSSV--------------------ISS------------------------------AT1G77850-At1g77850 SDGGSSYY------------GGDEYNGYYSQSSV-----------AKEDDGSPKKTFRRSAT2G28350-AtARF10 LGSNAG--------------SDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNN--DGNAAAT2G33860-AtARF3 GTAALSA--------------------QYN------------------------------AT2G46530-AtARF11 STMPASV--------------------ISS------------------------------AT3G61830-AtARF18 STMPTSV--------------------ISS------------------------------AT4G23980-AtARF9 SSMPSSV--------------------ISS------------------------------AT4G30080-AtARF16 IGNGPEY---SAGWNPIGGSC-----GYSSLLREDESNSLRRSNCSLA-----------DAT5G20730-AtARF7 PALSSSV--------------------ISS------------------------------AT5G37020-AtARF8 TIVPSSV--------------------LSS------------------------------AT5G60450-AtARF4 NGLPDSI--------------------IE-------------------------------AT5G62000-AtARF2 GNVPSSV--------------------ISS------------------------------gene06434 GNVPSSV--------------------ISS------------------------------gene28545 NGLPDSV--------------------VGN------------------------------gene16050 --------------------ESH--IGLKSS----------------SEEGSGGDGF---gene12917 PALSSSV--------------------ISS------------------------------gene31631 TVMPSSV--------------------LSS------------------------------gene27792 DNATASL--------------------ISG------------------------------gene08492 TTLPSSV--------------------LSA------------------------------gene16844 LEGSPESVSAASGWNH-GRSGGPPYSGFSVFLKEEESKMGRNGFGNSSESGNVRGGRGGVgene30394 TVMPSSV--------------------LSS------------------------------gene29771 ASATYPT--------------------PGS------------------------------gene23072 ------------------------------------------------------------gene12224 TNLSSSV--------------------LSS------------------------------gene29255 SNMPSSV--------------------ISS------------------------------gene02234 HGGDCARW------------SSH--IGLKSS----------------SEEGSGGDGF---gene25123 SSMPSSV--------------------ISS------------------------------gene09733 IGGGPES---SSGWNPAGGNCAMPYGGFSSYLREDEGKVMRNGNGNASNSN-----GSLMgene22728 TVMPSSV--------------------LSS------------------------------gene19138 TPMPSSV--------------------ISS------------------------------gene23280 IGGGPEY---PCGWNTPSGNSCSQYDGYSGFSRENGNKLMDKNS-------------SGT

AT1G19220-AtARF19 --DSMHIGILAAAAHANANSSPFTIFFNPR-ASPSEFVVPLAKYNKALY-AQVSLGMRFRAT1G19850-AtARF5 --DSMHIGVLAAAAHATANRTPFLIFYNPR-ACPAEFVIPLAKYRKAICGSQLSVGMRFGAT1G30330-AtARF6 --DSMHLGLLAAAAHAAATNSRFTIFYNPR-ASPSEFVIPLAKYVKAVYHTRVSVGMRFRAT1G34170-AtARF13 --NCMQHGVIASVVNAFKTKCMFNVVYKP------------------------------RAT1G34310-AtARF12 --DCMRHGVVASAKHAFDNQCMFTVVYKP---RSSKFIVSYDKFLDAVN-NKFNVGSRFTAT1G34390-AtARF22 --ESMRHGVIASAKHAFDNQCMFIVVYKP---RSSQFIVSYDKFLDAVN-NKFNVGSRFTAT1G34410-AtARF21 --DCMRHGVIASAKHAFDNQCIFIVVYKP---RSSQFIVSYDKFLDAVN-NKFNVGSRFTAT1G35240-AtARF20 --DCMRHGVIASAKHALDNQCIFIVVYKPS-IRSSQFIVSYDKFLDAMN-NKFIVGSRFTAT1G35520-AtARF15 --DCMRHGVIASAKHAFDNQCMFIVVYKP---RSSQFIVSYDKFLDAVN-NKFNVGSRFTAT1G35540-AtARF14 --ESMRHGIIASAKHAFDNQCMFIVVYKP---RSSQFIVSYDKFLDVVN-NKFNVGSRFTAT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 --HSMHIGVLATAAHAITTGTIFSVFYKPR-TSRSEFIVSVNRYLEAKT-QKLSVGMRFKAT1G77850-At1g77850 GNGKLTAEAVTDAINRASQGLPFEVVFYPA-AGWSEFVVRAEDVESSMS-MYWTPGTRVKAT2G28350-AtARF10 ATGRVRVEAVAEAVARAACGQAFEVVYYPR-ASTPEFCVKAADVRSAMR-IRWCSGMRFKAT2G33860-AtARF3 --QNMNHNNFSEVAHAISTHSVFSISYNPK-ASWSNFIIPAPKFLKVVD-YPFCIGMRFKAT2G46530-AtARF11 --QSMRLGVLATASHAVTTTTIFVVFYKPR-IS--QFIISVNKYMMAMK-NGFSLGMRYRAT3G61830-AtARF18 --QSMHLGVLATASHAVRTTTIFVVFYKPR-IS--QFIVGVNKYMEAIK-HGFSLGTRFRAT4G23980-AtARF9 --HSMHLGVLATARHATQTKTMFIVYYKPR-TS--QFIISLNKYLEAMS-NKFSVGMRFKAT4G30080-AtARF16 RKGKVTAESVIEAATLAISGRPFEVVYYPR-ASTSEFCVKALDARAAMR-IPWCSGMRFKAT5G20730-AtARF7 --DSMHIGVLAAAAHANANNSPFTIFYNPRWAAPAEFVVPLAKYTKAMY-AQVSLGMRFRAT5G37020-AtARF8 --DSMHIGLLAAAAHASATNSCFTVFFHPR-ASQSEFVIQLSKYIKAVFHTRISVGMRFRAT5G60450-AtARF4 --KNSCSNILSLVANAVSTKSMFHVFYSPR-ATHAEFVIPYEKYITSIR-SPVCIGTRFRAT5G62000-AtARF2 --HSMHLGVLATAWHAISTGTMFTVYYKPR-TSPSEFIVPFDQYMESVK-NNYSIGMRFKgene06434 --HSMHLGVLATAWHAIKTGTMFTVYYKPR-TSPAEFIVPFDQYMESVK-NNYSIGMRFKgene28545 --QNSYSSVVSLIANAVSIKSMFHVFYSPR-ASHAEFVIPYQKYIRSIA-NPVTMGTRFKgene16050 -KKKLSEEAVVEAAEMAAQEMPFE----------------AEVVEKALN-VFWTAGMRVKgene12917 --DSMHIGILAAAAHAAANNSAFTIFYNPR-ASPSEFVVPLAKYNKAMY-TQVSLGMRFRgene31631 --DSMHIGLLAAAAHASSTNSCFTVFYNPR-ASPSEFVIPLSKYIKAVFHTRVSVGMRFRgene27792 --NSMQHGILACAFHAISTGTMFTVYYRPW-TSPAPFIIPYDQYMKSAQ-YEYSVGMRFKgene08492 --DSMHIGVLAEAAHAAANRSPFTIFYNPR-ACPSEFVIPLVKFQKALYGNQLSVGMRFGgene16844 GGGRVRPEAVVEAASLAEKGQPFEVVFYPR-ASTPEFCVKASAVRAAVR-VQWCSGMRFKgene30394 --DSMHLGLLAAAAHAASTNSRFTIFYNPR-ASPSEFVIPLAKYIKAVYHTHISVGMRFRgene29771 --QHLNYNSVTELVDAISTKTAFNAYYNPR-ASSSEFIIPFRKFLRSLG-HSFCAGMRFKgene23072 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene12224 --DSMHIGILAAAAHAAANNSIFTVFYNPR-ASPSEFVIPLAKYYKAVCANQLSLGMRFRgene29255 --HSMHLGVLATASHAIATGTLFSVFYKPR-TSQSEFLVSVNKYLEARS-HKLSVGMRFKgene02234 -KTKLSAEAVVEAAEMAAQEMPFEVVYYPK-AGWADFVVKAEVVEKALN-VFWTAGMRVKgene25123 --QSMHVGVLATASHAVATQTLFVVYYKPR-TS--QFIVSLNKYLEAVN-NKFSVGMRFKgene09733 GKGKVGPESVLEAATLASNGQPFEVVYYPR-ASTPEFCVKASLVKAALQ-IRWCPGMRFKgene22728 --DSMHIGLLAAAAHAAATNSRFTIFYNPR-ASPSEFVIPLAKYVKAVYHTRVSVGMRFRgene19138 --QSMHLGVLATASHAVMTSTLFVVYYKPR-TS--QFIVGLNKYLEAIN-NKFSVGMRFKgene23280 TRGRVKAEHVIEAATLAVSGQPFEVVYYPR-ASTPEFCVKAASVRAAMQ-IRWCSGIRFK

AT1G19220-AtARF19 MMFETEDCGVR---------------------RYMGTVTGISDLDPVRWKGSQWRNLQVGAT1G19850-AtARF5 MMFETEDSGKR---------------------RYMGTIVGISDLDPLRWPGSKWRNLQVEAT1G30330-AtARF6 MLFETEESSVR---------------------RYMGTITGICDLDPTRWANSHWRSVKVGAT1G34170-AtARF13 MQFEGKDFSEK---------------------RYDGTIIGVND-MSPHWKDSEWRSLKVQAT1G34310-AtARF12 MRLEGDDFSER---------------------RCFGTIIGVSD-FSPHWKCSEWRSLEVQAT1G34390-AtARF22 MRFEGDDFSER---------------------RYFGTIIGVSD-FSPHWKCSEWRNLEVQAT1G34410-AtARF21 MRFEGDDFSER---------------------RYFGTIIGVSD-FSPHWKCSEWRSLEVQAT1G35240-AtARF20 MRFEGDDFSER---------------------RYFGTIIGVND-FSPHWKCSEWRSLEVQAT1G35520-AtARF15 MRFEGDDLSER---------------------RYFGTIIGVSN-FSPHWKCSDWRSLEVQAT1G35540-AtARF14 MRFEGDDFSER---------------------RSFGTIIGVSD-FSPHWKCSEWRSLEVQAT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 MRFEGEEAPEK---------------------RFSGTIVGVQENKSSVWHDSEWRSLKVQAT1G77850-At1g77850 MAMETEDSSRI--------------------TWFQGIVSSTY-QETGPWRGSPWKQLQITAT2G28350-AtARF10 MAFETEDSSRI--------------------SWFMGTVSAVQVADPIRWPNSPWRLLQVAAT2G33860-AtARF3 ARVESEDASER---------------------RSPGIISGISDLDPIRWPGSKWRCLLVRAT2G46530-AtARF11 MRFEGEESPER---------------------IFTGTIIGSGD-LSSQWPASKWRSLQIQAT3G61830-AtARF18 MRFEGEESPER---------------------IFTGTIVGSGD-LSSQWPASKWRSLQVQAT4G23980-AtARF9 MRFEGEDSPER---------------------RYSGTVIGVKD-CSPHWKDSKWRCLEVHAT4G30080-AtARF16 MAFETEDSSRI--------------------SWFMGTVSAVNVSDPIRWPNSPWRLLQVAAT5G20730-AtARF7 MIFETEECGVR---------------------RYMGTVTGISDLDPVRWKNSQWRNLQIGAT5G37020-AtARF8 MLFETEESSVR---------------------RYMGTITGISDLDSVRWPNSHWRSVKVGAT5G60450-AtARF4 MRFEMDDSPER---------------------RCAGVVTGVCDLDPYRWPNSKWRCLLVRAT5G62000-AtARF2 MRFEGEEAPEQ---------------------RFTGTIVGIEESDPTRWPKSKWRSLKVRgene06434 MRFEGEEAPEQ---------------------RFTGTIIGIEDADPARWRESKWRSLK--gene28545 MRFDRDDSPER---------------------RCSGVVTGISDLDPYRWPNSKWRCLMVRgene16050 MAMETDDSSRM--------------------TWFQGALSSVFVPESGPWKGSPWRMLQVFgene12917 MMFETEESGVR---------------------RYMGTITGISELDSVRWKNSQWRNLQVGgene31631 MLFETEESSVR---------------------RYMGTITGISDLDPVRWPNSHWRSVKVGgene27792 MWFEGEEGAEK---------------------RCEGTIIDINDKDSIRWPSSEWGRLKVQgene08492 MMFETEESSKR---------------------RYMGTIVNISDLDPLRWPGSKWRNLQVEgene16844 MAFETEDCSRI--------------------SWFMGTITSVQVNDKIRWPNSPWRVLQVTgene30394 MLFETEESSVR---------------------RYMGTITGISDLDAARWPNSHWRSVKVGgene29771 MRFETEDAAEQ---------------------RYTGLVTGISELDPLRWPGSKWKCVAVRgene23072 ------------------------------------------------------------gene12224 MMFETEESGTRRFRFNGFDSNFEFENEKLSFCRYMGTITGISDLDPVRWKNSQWRNLQVGgene29255 MRFEGEEVPER---------------------RFSGTIVGVGDNTSPGWSNSEWRSLKVQgene02234 MAMETDDSSRM--------------------TWFQGTLSSVFVPESGPWKGSPWRMLQVTgene25123 MRFEGEDAPER---------------------RFSGTIIGLED-ISPQWADSKWRSLKVQgene09733 MAFETEDSSRI--------------------SWFMGTISSVQVSDPMRWPESPWRLLQVSgene22728 MLFETEESSVR---------------------RYMGTITGISDLDSVRWSNSHWRSVKVGgene19138 MRFEGEDSPER---------------------RFTGTIVGVGD-LSPHWAESKWRSLKVQgene23280 MPFETEDSSRI--------------------SWFMGTVSSVHYADP-RWPDSPWRYLQVA

AT1G19220-AtARF19 WDEST-AGDRPSRVSIWEIEPVITPFYIC--PPP--F-FRPKYPRQPGMP---DDE-LDMAT1G19850-AtARF5 WDEPG-CNDKPTRVSPWDIETPES-LFIF--PSL--T-SGLKRQLHPSYF---AGE-TEWAT1G30330-AtARF6 WDEST-AGERQPRVSLWEIEPLTT-FPMY--PSP--FPLRLKRPWPPGLPSFHGLKEDDMAT1G34170-AtARF13 WDELS-PFLRPNQVSPWDIEHLIPSSDIS--Q-S--SLKKKKHWLQLNEIGATLSN----AT1G34310-AtARF12 WDEFT-SFPGPKKVSPWDIEHLMPAINVP--R-S--FLLKNKRLREVNEIGSSSSH----AT1G34390-AtARF22 WDEFA-SFSRPNKVSPWEIEHLMPALNVP--R-P--SLLKNKRLREVNEIGSSSSH----AT1G34410-AtARF21 WDEFA-SFSRPNKVSPWEIEHLVPALNVP--R-S--SLLKNKRLREVNEFGSSSSH----AT1G35240-AtARF20 WDEFA-SFSRPNKVSPWEIEHLMSALNVP--R-S--SLLKNKRLREVNEFG---------AT1G35520-AtARF15 WDEFA-SFLRPNKVSPWEIEHLMPALNVP--R-S--SFLKNKRLREVNEFGSSSSH----AT1G35540-AtARF14 WDEFA-SFPRPNQVSPWDIEHLTPWSNVS--R-S--SFLKNKRSREVNEIGSSSSH----AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 WDEPS-SVFRPERVSPWELEPLVANSTPSSQP-Q--PPQRNKRPRPPGLPSPAT--GPSGAT1G77850-At1g77850 WDEPE-ILQNVKRVNPWQVEIAAHATQLH------TPFPPAKRLKYPQPGGGFLSG---DAT2G28350-AtARF10 WDEPD-LLQNVKRVSPWLVELVSNMPTIHLSP----FSP-RKKIRIPQPFEFPFHG---TAT2G33860-AtARF3 WDDIV-ANGHQQRVSPWEIEPSGSISNSG--S-F--VTTGPKRSRIGFSSGKPDI-PVSEAT2G46530-AtARF11 WDEPS-SIQRPNKVSPWEIEPFSPSALTPTPT-Q--QQSKSKRSRPISE----ITGSPVAAT3G61830-AtARF18 WDEPT-TVQRPDKVSPWEIEPFLATSPISTPAQQ--PQSKCKRSRPIEP----SVKTPAPAT4G23980-AtARF9 WDEPA-SISRPNKVSPWEIEPFVNSEN--VPK-S--VMLKNKRPRQVSEVSALD-VGITAAT4G30080-AtARF16 WDEPD-LLQNVKRVNPWLVELVSNVHPIPLTS----FSPPRKKMRLPQHPDYNNLI---NAT5G20730-AtARF7 WDESA-AGDRPSRVSVWDIEPVLTPFYIC--PPP--F-FRPRFSGQPGMP---DDE-TDMAT5G37020-AtARF8 WDEST-AGERQPRVSLWEIEPLTT-FPMY--PSL--FPLRLKRPWHAGTSSLPDGRGD--AT5G60450-AtARF4 WDESF-VSDHQERVSPWEIDPSVSLPHLS--I-Q--SSPRPKRPWAGLLDTTPPGNPITKAT5G62000-AtARF2 WDETS-SIPRPDRVSPWKVEPALAPPALS--P-V--PMPRPKRPRSNIAPSSPDSSMLTRgene06434 --------------------PALAPPALN--P-L--PMPRPKRPRPNMVPSSPDSSVLTRgene28545 WDEDI-GNDHQERVSLWEIDPSVSLPPLS--I-Q--SSPRLKKLRTSLQAFPPNPSIPAGgene16050 HFSSR-ILALNA--LWWLLASH*-------------------------------------gene12917 WDEST-AGDRPSRVSIWEIEPVVTPFYIC--PPP--F-FRPKFPKQPGMP---DDE-SDIgene31631 WDEST-AGERQPRVSLWEIEPLTT-FPMY--PSL--FPLRLKRPWHPGASSMHDNRDE--gene27792 WDATSDTILHSERLSPWNIKPAESSNKKR--ASF--PRPHHKRLRIP-DPSSPMFSGLARgene08492 WDEPG-CCDKQNRVSSWEVETPES-LFIF--PSL--T-SSLKRPFHPGYL---SAE-TEWgene16844 WDEPD-LLQNVKCVSPWLIELVSNFPIIHMAP----FSPPRKKLRILQHPDFTL-D---Rgene30394 WDEST-AGERQPRVSLWEIEPLTT-FPMY--PSS--FPLRLKRPWPPGLPSYNGLREDDHgene29771 WDDID-TSKQHGRVSPWEIEPSGSISNSS--G-L--MASGLKRSRMGLSAEKQEF-PVPHgene23072 ------------------------------------------------------------gene12224 WDEST-AGERRNRVSIWEIEPVTAPFFIC--PPP--F-FRSKRPRQPGMP---DDESSDLgene29255 WDEPS-SIPRPDRVSPWELEPLVATTPLN--L-Q--PALRNKRARAPVLPSSTP------gene02234 WDEPE-VLQNAKRVSPWQVDFVASTPSLHPAPPFHTVYPLTKRFRAPLNPA-LLRH---Ggene25123 WDESA-SIPRPDRVSPWEIEPYVASIPASLSQ-S--TVLKNKRPRLVPEIPAPD-TAS--

Page 24: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene09733 WDEPD-LLQNVKRVSPWLVELVSNMPAIHLTP----FSPPRKKMRLPQHPDFPF-E---Ggene22728 WDEST-AGERQPRVSLWEIEPLTT-FPMY--PSP--FPLRLKRPWPSGMPSFHALKDGDMgene19138 WDEHA-TVPRPDRVSPWEIEPFVASVPLNLAQ----PVVKSKRPKTVEIASSEITTNSTAgene23280 WDEPD-LLQNVRSVSPWLVELVSSIPAIDLSP----FSPPRKKLRLQQTPDYSL-L---G

AT1G19220-AtARF19 ENAFKRAMPWMGEDFGM-KDAQSSMFPGLSLVQWMSMQQNNPLSGSA---TPQLPSALSSAT1G19850-AtARF5 GSLIKRPLIRVPDSANG--IMPYASFPSMASEQLMKMMMRPHNNQNV---PSFMSEMQQNAT1G30330-AtARF6 GMSMSSPLMWDR-------GLQSLNFQGMGVNPWMQPRLDTSGLLGM--QNDVYQAMAAAAT1G34170-AtARF13 --LW-----------------TCQEIGQRSMN---------------------SPISV--AT1G34310-AtARF12 --LL------------PPILTQGQENEQLSVA---------------------SPMNI--AT1G34390-AtARF22 --LL------------PPILTQGQEIGQLSVA---------------------SPMNI--AT1G34410-AtARF21 --LL------------PPILTQGQEIGQLSVA---------------------SPMNI--AT1G35240-AtARF20 -----------------------QEIGQLSVA---------------------SPMNT--AT1G35520-AtARF15 --LL------------PPILTQGQEIGQLSVA---------------------SPMNI--AT1G35540-AtARF14 --LL------------PPTLTQGQEIGQQSMA---------------------TPMNI--AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 DGEILYPQSGLSSAA---------------------------------------------AT2G28350-AtARF10 K--F--P--IFSPGFAN-------------------------------------------AT2G33860-AtARF3 GIRAT----DFEESLRFQRVLQGQEIFPGFINTC---SD---------------------AT2G46530-AtARF11 SSFL------------SSFS-QSH------------------------------------AT3G61830-AtARF18 PSFL------------YSLP-QSQ------------------------------------AT4G23980-AtARF9 SNLW------------SSVLTQPHE-----------------------------------AT4G30080-AtARF16 S--I--PVPSFPSNP---------------------------------------------AT5G20730-AtARF7 ESALKRAMPWLDNSLEM-KDPSSTIFPGLSLVQWMNMQQQNGQLPSAAAQPGFFPSMLSPAT5G37020-AtARF8 ---LGSGLTWLRGGGGEQQGLLPLNYPSVGLFPWMQQRLDLSQMGTD--NNQQYQAMLAAAT5G60450-AtARF4 RGGFL----DFEESVRPSKVLQGQENIGSASPSQ---GF------DVMNRRILDFAMQSHAT5G62000-AtARF2 EGTTKANMDPLP-ASGLSRVLQGQEYSTLRTKHTESVEC------DAPENSVVWQSSADDgene06434 EGSLKVTVDPVLQGGGYSRVLQGQEFSTLRGNFVESESD------TAQ-KSTARPATID-gene28545 SCGFM----DFEETVKSSKVLQGQENMGFISPHY---GC------DTLKS-PVDFEMQPSgene16050 ------------------------------------------------------------gene12917 ENAFKRAMPWLGDEFGM-KNSTSSIFPGLSLVQWMNMQQNNQ---FSAAQSGFFPSMVPPgene31631 ----AANLMWLRGATGE-QGLQSMNFQAVGMFPWMQQRLDSTLMGND--PNQQYQAMLAAgene27792 NGPFPSIMP------QRQEVFQGQEISEIHAYDLD-----------APMH---DPLHQSPgene08492 ANMIKRPFIRVPEMGHM--NSLPYQMSNLCSEQLVNMLLKPQLVSQA---GTL-SALQQ-gene16844 Q--L--TLPSFSGNP---------------------------------------------gene30394 NM--NSPLLWLRGDTGD-RGIQSLNYHGIGVTPWMQPRFDAS-MIGL--QTDMYQAMAAAgene29771 GIGAS----DFGESLRFQKVLQGQEVSGFDTPFG---SI------GGQNQHPSESRRVFHgene23072 ------------------------------------------------------------gene12224 DNIFKRTMPWLGDDMCM-KDPQ--VIPGLSLVQWMNMQQNSSVASSM--QPNYMHPSFSGgene29255 ------------------------------------------------------------gene02234 EEEFMIPMTGAANST---------------------------------------------gene25123 SITW------------HDVTQLSGAAEGQR-SEDH----------------VALNHQQADgene09733 Q--L--PMPTFSGNHHL-------------------------------------------gene22728 GM--NAPLMWLQGGVGD-PAMQSLNFQGFGMTPWMQPRLDTS-MAGL--QPDVYQAMAAAgene19138 SPFW------------YQGSNQSAEPTQLG-CVAEVQSC------G---SQVVWPPRQKDgene23280 Q--L--PMQSVYGNF---------------------------------------------

AT1G19220-AtARF19 FNL--PNNFASNDPSKL-LNFQSPNLSSA--NSQFNKPNTVNHISQQMQAQPA-------AT1G19850-AtARF5 --IVMGNGGLLGDM----------------------------------------------AT1G30330-AtARF6 ---ALQDMRGI-DPAKA--AASLLQFQNSP-GFSMQSP----------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ---------------PV---TPDGVW--------KSP-----------------------AT1G77850-At1g77850 -------APDPSPSM-----FSYSTFPAG-------------------------------AT2G28350-AtARF10 -------NGGGESMCYL--SNDNNNAPAG-------------------------------AT2G33860-AtARF3 ---GG--A--G---AR-------------------R------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------FAQSC---IT-------SQW--------SSP-----------------------AT4G30080-AtARF16 -------LIRSSPLSSV--L---DNVPVG-------------------------------AT5G20730-AtARF7 TAALHNNLGGTDDPSKL-LSFQTPHGGISSSNLQFNKQNQQAPMSQLPQPPTTLSQQQQLAT5G37020-AtARF8 ---GLQNIGGG-DPLRQ----QFVQLQEPH-HQYLQQSASHNS----------------DAT5G60450-AtARF4 ---ANPVLVS----SRV--KDRFGEF--------VDA-----------------------AT5G62000-AtARF2 ---DKVDVVSG---SRR-YG--SENW--------MSS-----------------------gene06434 -----DNSISG---SKR-YGSGTDNW--------MPS-----------------------gene28545 ---AHQNLASH---ITQ--KATIGEF--------MRA-----------------------gene16050 ------------------------------------------------------------gene12917 TTL----HNGIDDPSKL-LNFQAPGLTAPS---QLNKAALQNQVGQVQQPTVTWPQQQQLgene31631 ---GLQNVGSG-DQLRQ----HVMHFQQPL--QYLQQPGSHNP----------------Lgene27792 ---CSSIAFSC---ENMLTPCNTNQW--------PPQ-----------------------gene08492 --ESAANGGALEDM----------------------------------------------gene16844 -------LGSSSPMCCL--P---DNTPAG-------------------------------gene30394 ---ALQEMRGV-DPSKL-LPTSLLQFQQTQ-NLSSRSA----------------------gene29771 ---GS--I--G---SRG--NDLRNSF--------VN------------------------gene23072 ------------------------------------------------------------gene12224 --SVMPNLTGV-DLSRQ-MGLSAPQLPQP-NNLQFNAQRLPQQVQQLDQLPKMQSTMNPLgene29255 ---------------DL---SSLGEW--------KSQ-----------------------gene02234 -------MGQEPGKI-------YSVIPMR-------------------------------gene25123 ---II-SISSC---ISR---TTDGGW--------LSS-----------------------gene09733 -------LGTSSPFGCL--P---DKTPAG-------------------------------gene22728 ---ALQEMRAV-DAKCS--SQSLLPFQQSS-NVSNGAA----------------------gene19138 ---SNGSGYSS---SRI---CAEGIW--------PSS-----------------------gene23280 -------LTSSNTMCNL--S---DNIPAG-------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G19220-AtARF19 ---MVKSQQQQ--------QQQQQQHQHQQQQLQQQ-----------Q------------AT1G19850-AtARF5 -KMQQPLMMNQKSEM-----------VQPQNKL-TVNPSASNTSGQEQNLSQSMSAPAKPAT1G30330-AtARF6 -SLVQPQMLQQQ--LSQQQQQLSQQQ-QQQQQLSQQ-------QQ-QQ-----LSQQQQQAT1G34170-AtARF13 ------------PEFSYPNAI---------------------------------------AT1G34310-AtARF12 ------------S-LRYRDAT---------------------------------------AT1G34390-AtARF22 ------------S-LTYRDTT---------------------------------------AT1G34410-AtARF21 ------------S-LRYRDTT---------------------------------------AT1G35240-AtARF20 ------------S-LRYRDTT---------------------------------------AT1G35520-AtARF15 ------------S-LLYRETT---------------------------------------AT1G35540-AtARF14 ------------S-LRYRDIT---------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ----------ADTPSS------------------------------------------VPAT1G77850-At1g77850 ---MQGARQY------------DFGSF-------NPTGFIGGNPP---------------AT2G28350-AtARF10 ---IQGARQAQ---------Q-LFGSP-------SPSL-LSDLNL---------------AT2G33860-AtARF3 ------------GRFKGT----EFGDS-YGFH-------KV---LQGQETVPAYSITDHRAT2G46530-AtARF11 ----------ESNPSV------------------------------------------KLAT3G61830-AtARF18 ----------DSINAS------------------------------------------LKAT4G23980-AtARF9 ----------QQCHRD------------------------------------------A-AT4G30080-AtARF16 ---LQGARHNA---------HQYYGLS-------SSD-----LHH---------------AT5G20730-AtARF7 QQLLHSSLNHQQQQSQSQQQQQQQQLLQQQQQLQSQQHSNNNQSQ-SQQQQQLLQQQQQQAT5G37020-AtARF8 -LMLQQQQQQQA---SRHL-------MHAQTQIMSENLPQQN---------------MRQAT5G60450-AtARF4 ----------TGVNPACS----GVMDL-DRFP-------RV---LQGQEICSLKSFPQFAAT5G62000-AtARF2 ----------ARHEPTYTDLLSGFGTNIDPSH-------GQRIPFYDHSSSPSMPA--KRgene06434 ----------GRHEPTYTDLLSGFGTNSD-SH-------GICQPFVDQAVASSNSM--RKgene28545 ----------H--RTSYT----GFAES-DRFP-------KV---LQGQEICPLRSLSGKAgene16050 ------------------------------------------------------------gene12917 QQLMQNPMNQQQQNHSQQQQL--QQLMHTPLN--QQ---QQNLPQ-QQQLQQLMQTPANQgene31631 -LQLQQQVIPQS--VPHNM-------LQAQPQVSMENLPQHL---------------LPPgene27792 ----------FT----------PFGVDSEPFS----------------------------gene08492 -QAMQAKMNQKNLAF-----------CSEGMSLQSQNPSQSCTTAK---F----------gene16844 ---IQGARHA------------QLRIS-------LTN-----LHF---------------gene30394 -ALMQPQMVQES--QSQQAFLQGVEEIRQSY------------SQ-TP-----TQS----gene29771 ------------SEIASK----GFGES-FRFQ-------KV---LQGQEIFPSTPYGRAPgene23072 ------------------------------------------------------------gene12224 ASM-----VQRQQ------------QMGDMTQVARQNLVNQSLPS-SQAQSPLLQPQ-SPgene29255 ----------AESPSA------------------------------------------FSgene02234 ---LICLMKV------------L----------------LGCAPI---------------gene25123 ----------PTV-----------------------------------------------gene09733 ---MQGARHA------------HYGLS-------LSD-----IHL---------------gene22728 -AMLQRQSLPQS--QSQNTFLQSFQENQAPSQLLQQQLRYHPYNN-DQ-----RQQQHQQgene19138 ----------PNVNVS------------------------------------------LSgene23280 ---IQGARQA------------HFGLS-------STN-----F-L---------------

AT1G19220-AtARF19 QLQM------------------------------------------------SQQQVQQQAT1G19850-AtARF5 ENST--------------------------------------------------------AT1G30330-AtARF6 QLSQ-----------------------------------QQ-------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 LFSP--------------------------------------------------------AT1G77850-At1g77850 --QL--------------------------------------------------------AT2G28350-AtARF10 --SS--------------------------------------------------------AT2G33860-AtARF3 QQHG--------------------------------------------------------AT2G46530-AtARF11 LFQDP-------------------------------------------------------AT3G61830-AtARF18 LFQDP-------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 --Y---------------------------------------------------------AT5G20730-AtARF7 QLQQQHQQ----PLQQQ---TQQQQLRTQPLQSHS-----HPQPQQLQQHKLQQLQVPQNAT5G37020-AtARF8 EVSN------------------------------------QPAG----------------AT5G60450-AtARF4 GFSPA-------------------------------------------------------AT5G62000-AtARF2 ILSDS-------------------------------------------------------gene06434 HSLDQ-------------------------------------------------------gene28545 NFNLG-------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 QLQNYSQQ----QQQQREQQQRQEPQGHQPLQNLHQIHQQQPQRQQPQQQQLGQ------gene31631 QFNN------------------------------------QTEE----------------gene27792 ------------------------------------------------------------gene08492 GSQT--------------------------------------------------------gene16844 --N---------------------------------------------------------gene30394 --HL-----------------------------------Q--------------------gene29771 ATNEA-------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 LLQPQSLAQANSILQQQS-STQNQLQRN--------------LPQNLQQHQQQ-------gene29255 YNDPQ-------------------------------------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 --N---------------------------------------------------------gene22728 QLHQ-----------------------------------QQQQQ----------------gene19138 LFADS-------------------------------------------------------gene23280 --N---------------------------------------------------------

AT1G19220-AtARF19 GIYNNGTIAVANQVSCQ--SPNQPTGFS---------------QSQLQQQSMLPT-----

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G19850-AtARF5 -----------------------LSGCS---SGRV----QHGLEQSMEQASQVTTSTVCNAT1G30330-AtARF6 -------------------------------------------------QQQL-SQQQQQAT1G34170-AtARF13 ----------------------------------------------------------E-AT1G34310-AtARF12 ----------------------------------------------------------E-AT1G34390-AtARF22 ----------------------------------------------------------E-AT1G34410-AtARF21 ----------------------------------------------------------E-AT1G35240-AtARF20 ----------------------------------------------------------E-AT1G35520-AtARF15 ----------------------------------------------------------E-AT1G35540-AtARF14 ----------------------------------------------------------E-AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 --------------------------F---------------------------------AT2G28350-AtARF10 --------------------------Y---------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ----------------------------------------------------------A-AT3G61830-AtARF18 ----------------------------------------------------------S-AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 QLYNGQQAAQQHQSQQASTHHLQPQLVSGSMASSVITPPSSSLNQSFQQQQQQSKQLQQAAT5G37020-AtARF8 ------------------------------------------------QQQQL--QQPDQAT5G60450-AtARF4 ----------------------------------------------------------AAAT5G62000-AtARF2 ----------------------------------------------------------EGgene06434 ----------------------------------------------------------EGgene28545 ----------------------------------------------------------DWgene16050 ------------------------------------------------------------gene12917 -----------------------PTSVS----NGLITPNQIPSQNS--QQPMMFTQLQQQgene31631 ------------------------------------------------E------PHQQQgene27792 ------------------------------------------------------------gene08492 -----------------------PVGAN---TDKT----KLEPDLSTDQVSQLSSTGQGNgene16844 ------------------------------------------------------------gene30394 ------------------------------------------------------------gene29771 ----------------------------------------------------------REgene23072 ------------------------------------------------------------gene12224 ------------------------------------------------QQQHQQQQQQQQgene29255 ----------------------------------------------------------RGgene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 ------------------------------------------------QQQQL-QQQQQQgene19138 ----------------------------------------------------------Q-gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ----GAKMTHQNINSMGNKGLSQMTSFAQEMQFQQQLEMHNSSQLLRNQQEQ----SSLHAT1G19850-AtARF5 --------------------EEKVNQLLQ--------------------KPGA--SSPVQAT1G30330-AtARF6 QAYLGVP------------------------------ET---------------------AT1G34170-AtARF13 ------------------------------------------------------DSKFL-AT1G34310-AtARF12 ------------------------------------------------------DAMNP-AT1G34390-AtARF22 ------------------------------------------------------DVMNP-AT1G34410-AtARF21 ------------------------------------------------------AAMNP-AT1G35240-AtARF20 ------------------------------------------------------DAMNP-AT1G35520-AtARF15 ------------------------------------------------------DAMNP-AT1G35540-AtARF14 ------------------------------------------------------DAMTP-AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ---------------------------------------------------------PA-AT1G77850-At1g77850 ---TNN-------------------------------------------F-----LSPL-AT2G28350-AtARF10 ---TGN-------------------------------------------N-----KLHS-AT2G33860-AtARF3 -------------------------------------L-----------SQRNIWCGPF-AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 -------------------------------------------------------YLN--AT5G20730-AtARF7 HHHLGASTSQSSVIETSKSSSNLMSAPPQETQFSRQVEQQQPPGLNGQNQQ--------TAT5G37020-AtARF8 NAYLNAF------------------------------KM---------------------AT5G60450-AtARF4 ---------------PN--------------PFAYQAN-----------KS-SYYPLALHAT5G62000-AtARF2 -------------------------------KFDYLA---------------NQWQMIH-gene06434 -------------------------------KFN--L---------------SSWSMLP-gene28545 ESNRGS---------TS--------------FNSYQAP-----------KP-NLFTLGSEgene16050 ------------------------------------------------------------gene12917 HSLTSSAQSQQTVHTPNKN-SFQLAAGTQDSQIQQQLEP-Q-PSLLQRQQQAQLQQSPLQgene31631 NTYHDAL------------------------------KV---------------------gene27792 ------------------------------------------------------------gene08492 --------------------EEKLAAGIASSPYNHAF--------VNQ-NQGQLQTSPRPgene16844 -------------------------------------------------S-----KLQ--gene30394 ------------------------------------------------------------gene29771 ---YGC---------PG-------------IFDGFQVP-----------SFRNGWSTMM-gene23072 ------------------------------------------------------------gene12224 HHQQN----------------------------------------VGQNQQQNFIQTPL-gene29255 -------------------------------RDLYPS---------------PKYSSAS-gene02234 --------------------------------------------------------IP--gene25123 ------------------------------------------------------------gene09733 -------------------------------------------------------KLQ--gene22728 L-----------------------------------------------------------gene19138 ------------------------------------------------------------gene23280 -------------------------------------------------------NLP--

AT1G19220-AtARF19 SLQQNLSQNPQQLQMQQQSSKPSPSQQLQLQLLQKLQQQQQ-------------------AT1G19850-AtARF5 --------ADQ-----------------CLDITHQIYQPQSDPING--------------AT1G30330-AtARF6 ---------------------HQPQSQAQSQSNNHLSQQQQQVVDNHNP-----------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------PDL---------------------------AT2G28350-AtARF10 ------------------------------PAM---------------------------AT2G33860-AtARF3 --QN---------------------FSTR---I--LPPS---------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------RPP---------------------------AT5G20730-AtARF7 LLQQK---AHQAQAQQIFQQSLLEQPHIQFQLLQRLQQQ---------Q-----------AT5G37020-AtARF8 ----------------------------QNGHLQQWQQ----------------------AT5G60450-AtARF4 GIRS---------------------THVPYQNPYNAGNQ---------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 SLLN---------------------MYFPYGDIHKVGQD---------------------gene16050 ------------------------------------------------------------gene12917 LLQQSQK-AQQQPQVQPSPQQGLSEQQIHLQLLQKLQQQQQQHQQQQQQ-----------gene31631 ----------------------------QSEQLHR-SQ----------------------gene27792 ------------------------------------------------------------gene08492 --------MQQ-------------------PMESLLYHSQQTDLPQ--------------gene16844 ------------------------------SGL---------------------------gene30394 ---------------------------HQLQHQNSFSNQQQQILDHQ-------------gene29771 --QG---------------------SNTP---MHRAAPV---------------------gene23072 ------------------------------------------------------------gene12224 -----------PDQM-NPQLQHLSDNQLQLQLLQKLQQHQQSYLAQQALQQQPTQLLQLQgene29255 ------------------------------------------------------------gene02234 --------------------------------L---------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------SGL---------------------------gene22728 ---------------------------QQSQNMHQFSV-QQ-------------------gene19138 ------------------------------------------------------------gene23280 ------------------------------PGL---------------------------

AT1G19220-AtARF19 ---QQSIPPVSSSLQPQLSA-----LQQTQSHQLQQLLSS--QNQQPLAH---------GAT1G19850-AtARF5 ---FSFLETDE---------------LTSQVSSFQ-------------SLA---------AT1G30330-AtARF6 --SASSAAVVSAMSQFGSAS-------QPNTSPLQSMTSLCHQQSFSDTNG---------AT1G34170-AtARF13 --------S---------------------------------------------------AT1G34310-AtARF12 --------S---------------------------------------------------AT1G34390-AtARF22 --------S---------------------------------------------------AT1G34410-AtARF21 --------S---------------------------------------------------AT1G35240-AtARF20 --------S---------------------------------------------------AT1G35520-AtARF15 --------S---------------------------------------------------AT1G35540-AtARF14 --------S---------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 --------K-----------------------------AA------TFGHG---------AT1G77850-At1g77850 ------G--KVSTEMMNF----------------G---------SPPS------------AT2G28350-AtARF10 ------F--LSSFNPRH-------------------------------------------AT2G33860-AtARF3 ----VSSSPSSVLL-TNS---------NSP------------------------------AT2G46530-AtARF11 --------------------------------------------------T---------AT3G61830-AtARF18 --------------------------------------------------L---------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------P--P--PPPSSL----------------Q---------LSPS------------AT5G20730-AtARF7 --QQQFLSPQSQLPHHQLQSQ--------QLQQLP-TLSQ--GHQFPSS-----------AT5G37020-AtARF8 ------------------QS-------EMPSPSFM-------KSDFTDSSN---------AT5G60450-AtARF4 ----SSGPPSRAIN-FGE---------ET-------------------------------AT5G62000-AtARF2 --------SGLSLK-LHE---------SPK---VPAATDASLQGRCNVKY----------gene06434 --------SSLSLS-LDS---------NLK---GPIV-NASYQAQQNVRYG---------gene28545 ----PMTC-SNTTN-LAR---------EN-------------------------------gene16050 ------------------------------------------------------------gene12917 --QQQLFSPSSPLLQQQMLQQQLAHQQNQQLQQLQLPLSQ--HHQQQLSSNGFAADKLLNgene31631 ------------------QM-------NVPSPSFS-------RADYTDSST---------gene27792 ------------------------------------------------------------gene08492 ---SDFNSANSSLPSI----------ENDECMFYQ-------------PFA---------gene16844 ------F--SSSFQRFDQ----------------N---------SRIP------------gene30394 ----QIPSAISSMNQFASAS-------QSRSPSFQVITSPCQQQSFPDSNG---------gene29771 ----QVSSPSSVLM-FQQ---------AIN---AG--------AEFNSVYN---------gene23072 ------------------------------------------------------------gene12224 DQQRQLLDVSQSFPRPSTPS---------EMQDMP--LSA--PISHPQSRT-MPQQMTIYgene29255 --------K-----------------------------AN------SLCFT---------gene02234 ------A--TTTWRQV*-------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------F--PAGFPPLDH----------------V---------ATPTKFS---------gene22728 ----QIPNVMSSLSNFATQ---------SQSASLQAIPSQTQQQSFTEPVG---------gene19138 --------------------------------------------------E---------gene23280 ------I--PVGFQQLGH----------------V---------PPPGTPG---------

AT1G19220-AtARF19 NNSFPAS---------TFM-QPPQIQVS-------PQQQGQ----MSNKNL--VAAGRSHAT1G19850-AtARF5 ----------------GSY-KQPFILSS--------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------GN----------------------------AT1G77850-At1g77850 -DNLS-------------------------------------------------------AT2G28350-AtARF10 -HHYQA------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------ER----------------------------AT3G61830-AtARF18 ------------------------------ER----------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 -LGLR-------------------------------------------------------AT5G20730-AtARF7 CTNNGLS---------TLQ--PPQMLVS-------RPQE------KQNPPV--GGGVKAYAT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 --------------------------------------------------R---------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------GL----------------------------gene28545 --------------------------------------------------I---------gene16050 ------------------------------------------------------------gene12917 SNNFSAS---------PLL--QPQHVSS-------IQQQ------NQHKQ---VTAIRSHgene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ----------------GIL-RSPGPLSAY-------------------------------gene16844 -NGIRN------------------------------------------------------gene30394 ------------------------------------------------------------gene29771 ------------------------------GHN---QQ---------EQRIMQRTHSES-gene23072 ------------------------------------------------------------gene12224 NNNQPNGRFSHLQPQSKLQQQQPGILADMSGHMGLPPTGSTNQLSRAGSGMMAGVAGAGQgene29255 ------------------------------GN----------------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 NNTMI-------------------------------------------------------gene22728 ------------------------------------------------------------gene19138 ------------------------------GN----------------------------gene23280 G-NFM-------------------------------------------------------

AT1G19220-AtARF19 SG-HTDGEAPSCSTSPSANNTGHDNVSPTNF-LSRNQQQG----QAASVSASDS---VFEAT1G19850-AtARF5 ------QD-SSAVVLPDST-------------------------------NSPLFHDVWDAT1G30330-AtARF6 ------G---NNPISPLHTLLSNFSQDESSQLLHLTRTN---------SAMTSSG---WPAT1G34170-AtARF13 -----------------------------------------------------GLLLNHSAT1G34310-AtARF12 -----------------------------------------------------KLLMSYPAT1G34390-AtARF22 -----------------------------------------------------RLLMSYPAT1G34410-AtARF21 -----------------------------------------------------RLLMSYPAT1G35240-AtARF20 -----------------------------------------------------RLLMSYPAT1G35520-AtARF15 -----------------------------------------------------RLLMSYPAT1G35540-AtARF14 -----------------------------------------------------RLLMSYPAT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------KSFGV-----------------------------SIGSAFWPAT1G77850-At1g77850 ------PNSNTTNLSSGNDLVG------------------------------N-------AT2G28350-AtARF10 -RDSENSNNISCSLTMGNPAMV------------------------------Q-------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------NS--------------------------------N--KSV--AT3G61830-AtARF18 ------------------IS--------------------------------G--GYS--AT4G23980-AtARF9 ------------------NE--------------------------------DAKKSDWLAT4G30080-AtARF16 -NIDTKNEKGFCFLTMGTTPCN------------------------------D-------AT5G20730-AtARF7 SGITDGGDAPSSSTSPSTNNC---QISSSGF-LNRSQSGP-------AILIPDA---AIDAT5G37020-AtARF8 ------K--FATTASPASGD-GNLL---NFSITGQSVLP---------EQLTTEG---WSAT5G60450-AtARF4 ------------------------KF------DAQ-----------------NEGG--LPAT5G62000-AtARF2 ------------------SEYPVLNG------LST-----------------ENAGGNWPgene06434 ------------------NDYSVHHG------QRV-----------------EQTQGNWLgene28545 ---------K-------ANTYPVKMG------VAR-----------------NEVG--RPgene16050 ------------------------------------------------------------gene12917 S-NLTEGDGPSCSTSPSTNNC---HVSPSNL-LNRNQQGT-------AMLIADP---VPEgene31631 ------K--LSGSTNSRQNTLGSLCPEGSNSVLNRAGPA---------EQLPQQS---WTgene27792 ------------------------------------------------------RSMSVPgene08492 -GL---QD-SP-SVLTEANNF----------------------------SLTSVGQEMWDgene16844 -GDTNSNESLSCSLTMGNSIQN------------------------------L-------gene30394 ------NSATSTTLSPLSSLMGSFSQDESSNLLNVPRTN---------PLLSSSG---WPgene29771 ----DGGKQT-------SASFCERSF------TRE-----------------GHGG--M-gene23072 ------------------------------------------------------------gene12224 SG--LTDEGPSCSTSPSTNNCPTVVQPLTNNRAHRNSLTGEDMAQSANMVMSSSALETMPgene29255 ------------------NSLAAV----------------------------SGNPMLWSgene02234 ------------------------------------------------------------gene25123 ------------------ED--------------------------------SKTGPAWPgene09733 -QRPTMSENVSCLLTMSHSPQS------------------------------T-------gene22728 ------NAISSSDVPPIHSILGSLSQDGASQLLNLTGSN---------SGVSSSL---LPgene19138 ------------------KN--------------------------------ATMGSMLPgene23280 -RIAETNEDIPCRVTEGIPYHN------------------------------L-------

AT1G19220-AtARF19 RASNPVQELYT-----KTESRISQGMMNMKSAGE-----HFRFKSAVTDQIDVSTAGTTYAT1G19850-AtARF5 TQLNGLKF--D----------QFS-----------------------------P------AT1G30330-AtARF6 SKRPAVD----------------SSFQHSG-AGN-------NNTQSVLEQLGQSHTSN--AT1G34170-AtARF13 LLAIPNE-----------------NYNS--------------------------------AT1G34310-AtARF12 VQPMPKL-----------------NYNN--------------------------------AT1G34390-AtARF22 VQPMPKL-----------------NYNN--------------------------------AT1G34410-AtARF21 VQPMPKL-----------------NYNN--------------------------------AT1G35240-AtARF20 VQPMPKL-----------------NYNN--------------------------------AT1G35520-AtARF15 VQPMPKR-----------------NYNN--------------------------------AT1G35540-AtARF14 VQPMAKL-----------------NYNN--------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 TNADSA-----A-----------ESFAS--------------------------------AT1G77850-At1g77850 ------------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 -------------------------FSS--------------------------------AT3G61830-AtARF18 -------------------------SNN--------------------------------AT4G23980-AtARF9 N-NSYSVSNVAK-----------DSTLN--------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 MSGNLVQDLYS-----KSDMRLKQELVGQQ-KS---------KASLTDHQLEASASGTSYAT5G37020-AtARF8 PKAS-----------------------------------------------------N--AT5G60450-AtARF4 N-----------------------NV----------------------------------AT5G62000-AtARF2 IRPRALNYYEEVV----------NAQAQAQ------------------------------gene06434 MPPPPPPPS---------------HFDQAN------------------------------gene28545 K-----------------------TLSEHR------------------------------gene16050 ------------------------------------------------------------gene12917 PSSNLVHEFQS-----KSDIRIKHELPISK-GPD-----QIKYKGTITDQLEASSSGTSYgene31631 PKFAY-------------------------------------------------AQAN--gene27792 N------------------------INSSG------------------------------gene08492 NSLSRLLPQVDQLTSSHQDLSTFNSIPNSGSLRDLSDE---------------S------gene16844 ------------------------------------------------------------gene30394 SKRAAIEPLLS------------SGVPQCV-L-------------PQVEQLGPPQTT---gene29771 N-----------------------SFDQHG------------------------------gene23072 ------------------------------------------------------------gene12224 SNGNLVKGFQH-----KSEVKPSVNITRSQSQGMLNPHTYLNGVAAQTDYLDTSSSTTSAgene29255 NRVEAV-----T-----------ES-SS--------------------------------gene02234 ------------------------------------------------------------gene25123 LFSGYSTPT--S-----------LKPKN--------------------------------gene09733 ------------------------------------------------------------gene22728 KVESQLP----------------SGAAQCG-L-------------PQVDQLGTPQS----gene19138 NFSSPSS-----------------KTSN--------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 CPDVVGPVQQQQ-----------TFPLPSFGFDGDCQSHHPRNNLAFPGNLEA-----VTAT1G19850-AtARF5 --------LM----------QQDLYASQNICMSNSTTSN---------------ILDPPLAT1G30330-AtARF6 --------VP--PNAVSLPP---FPGGRECSIEQEGSASDPHSHLLFGVNIDSSSL----AT1G34170-AtARF13 ------------D-------Q------MIQPRKEDITTEATTSCLLFGVD----------AT1G34310-AtARF12 --------------------Q------MVTEMEENITTKTGTNFRLFGVTLDTPPVIKDPAT1G34390-AtARF22 --------------------Q------MVTQIEENITTKTGTNFRLFGVSLVTPSVIKDPAT1G34410-AtARF21 --------------------Q------MVTQIEENITTKAGTNFRLFGVTLDTPPMIKDPAT1G35240-AtARF20 --------------------Q------MVTQIEENITTKAVTNFRLFGVSLAIPLVIKDPAT1G35520-AtARF15 --------------------Q------MVTQIEENITTKAGTNFRLFGVSLATPPVIKDPAT1G35540-AtARF14 ---------------------------VVTPIEENITTNAVASFRLFGVSLATPSVIKDPAT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------A-------F------NNEST--EKKQTNGNVCRLFGFELVENVNVDECAT1G77850-At1g77850 ------------------------------RG---PLSKKVNSIQLFGKIITVEEHSESGAT2G28350-AtARF10 ------------------------------DKKKSVGSVKTHQFVLFGQPILTEQQVMNRAT2G33860-AtARF3 ------------------------------NGRLEDHHGGSGRCRLFGFPLTD-------AT2G46530-AtARF11 ----------------------------GLQC-KITEAPVTSSCRLFGFDLTSKPASAT-AT3G61830-AtARF18 ----------------------------SFKP-ETPPPPTNCSYRLFGFDLTSNSP-AP-AT4G23980-AtARF9 ------------D-------Q------MVSPVE-QKKPETTANYRLFGIDLMSSSLAVPEAT4G30080-AtARF16 ------------------------------TK---S---KKSHIVLFGKLILPEEQLSEKAT5G20730-AtARF7 GLDGG-ENNRQQ-----------NFLAPTFGLDGDSRNS-LLG---GANVDNG-----FVAT5G37020-AtARF8 --------TF--SEPLSLPQ---AYPGKSLAL----EPGNPQNPSLFGVDPD-SGL----AT5G60450-AtARF4 --------------TADLPFKID---MMGKQKGSELNMNASSGCKLFGFSLPV-------AT5G62000-AtARF2 ----------ARE-------QVT---KQPFTIQEETAKSREGNCRLFGIPLTNNMNGTDSgene06434 ----------VRE-------VMP---KHISLLKHEAVKPKDISCKLFGIPLITHEPSTNRgene28545 ----------PQEISSALPTSLT---NVKSPK-EVNADGTASGCKLFGFSLSG-------gene16050 ------------------------------------------------------------gene12917 CLDAS-T--MQQ-----------NYALPSFCLDGDVQSH-PRNNLPFSANIDG-----LAgene31631 --------AF--ANPMSFAP---FN-EKDNAVEQENCNSDSQNPTLFGVNIESSGL----gene27792 ----------SQE-------L-S---ASKQRSKTQGPFVRPNTLMLFGVNLDNSHSELPSgene08492 --------NN----------QSGVYGCPSVDVGTGVANI---------------VADPSVgene16844 ------------------------------EK---SDNVKKHQFLLFGQPILTEQQMSRSgene30394 --------IS--HSPISLPP---FPGRE-CSIDQE-GSTDPQTHLLFGINMS--------gene29771 ---------------ISHPPLLS---QSSLRGSQDMVSSCKSSCRLFGFSLSE-------gene23072 ------------------------------------------------------------gene12224 GLSQNDVHLQHNNTPLAFNPQSMLFREPSQEVEAQV---DQRNNVSYGSNIDSQLGIPLSgene29255 ------------P-------V------MKDSV--ERRQSTGNGYRLFGIQLLENSNIEETgene02234 ------------------------------------------------------------gene25123 ------------D-------L------MLDHVEKRKKTETASGCLIFGVDFSSNPKSAHSgene09733 ------------------------------KK---SEDVKPPQLMLFGKPILTEQQISLSgene22728 --------NI--SELTALPP---FPGREYS----FQGANDPQSNLLFGVNIDASSL----gene19138 ------------G-------P------VHDQL-ETGKKFESSGFRLFGYDVPKAITANLRgene23280 ------------------------------RD---NDEIKTPHIFLFGQLIVEGQQMSKS

AT1G19220-AtARF19 SDP-----LYS-Q-KDFQ------NLVPNYGN-TPRDIETELSSAAI-SSQSFGI--PSIAT1G19850-AtARF5 SNTVLDDFCAI-KDTDFQ-NHPSGCLVGNNNTSFAQDVQSQITSASFADSQAFSR--QDFAT1G30330-AtARF6 ---LM------------P------NGMSNLRS-IGIEGGDSTT-LPF-TSSNFNN---DFAT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 IE----------------------------------EIGSEISKLTE-GK----------AT1G34390-AtARF22 IE----------------------------------EIGSEISKLTE-GK----------AT1G34410-AtARF21 IK----------------------------------QIGSDISKLTE-RK----------AT1G35240-AtARF20 IE----------------------------------EIGSDISKLTE-GK----------AT1G35520-AtARF15 IE----------------------------------QIGSDISKLTE-GK----------AT1G35540-AtARF14 VE----------------------------------QIGLEISRLTQ-EK----------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ----FSAASVS------GA-VAVDQPVPSNEF--DSGQQSEPLNINQ-SD----------AT1G77850-At1g77850 PA--ESGLCEEDGSKESSD-----N---------ETQ--LSLSHAPP-----------SVAT2G28350-AtARF10 KRFLEEEA----------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 --------------------------IPHDKQ--LISVDSNISDSTT-KC----------AT3G61830-AtARF18 --------------------------IPQDKQ--PMD-----TCGAA-KC----------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT4G23980-AtARF9 EKTAPMRPINI------SKPT--------MDS--HSDPKSEISKVSE-EK----------AT4G30080-AtARF16 GSTDTANI--EKTQIS-SG-----G---------SNQNG-----VAG-----------REAT5G20730-AtARF7 PDTLLSRGYDS-Q-KDLQ------NMLSNYGG-VTNDIGTEMSTSAV-RTQSFGV--PNVAT5G37020-AtARF8 ---FL------------P------STVPRFAS-SSGDAE-ASP-MSL-TDSGFQN-----AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 TMSQRNN-LND------AAGLTQ-----IASP--KVQDLSDQSKGSK-ST----------gene06434 TAMNESA-YHN------QA-LTL------ES-----DQKLEVSRGLK-SV----------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 PDTLLSRGYDS-Q-KDLQ------NLLANYGG-TPRDIETELSTAAI-SSQSFGA--PNMgene31631 ---VF------------P------TTVPNFAT-SSNDA--DMP-MPL-GDSGFQS-----gene27792 PQ------VAN------STGLLSPCSIPPISQ----SSVSETVQLS--------------gene08492 TSTIMDEFSKL-KHAEFH--NPSECLVGNLS--SSQDLQSQITSASLGDSQAFSR--QELgene16844 CSSDAVSQVLA--GKNLKD-----E---------NQGRKRFLSVGSD-----------SAgene30394 ----------------------------NLRA-VGSD-SVSTT-IHF-PSNYMSTTETDFgene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 SDPLLEKGIVG-IGKDITNNITSGSMIGNFEN--SKDAQQELS-SSM-VSQSFGV--PDMgene29255 ----SP-MVVS------GK-LGDVQQISSFDA--ESDQHSEPSNVNR-SD----------gene02234 ------------------------------------------------------------gene25123 VEKPPPQPIIA------STGTTEGQVSISVEA--ESDQKSDLSKASK-ES----------gene09733 SSGDTVSP--VVTGNSSSD-----G---------SGDKMANHSENSG-----------SAgene22728 ---ML------------Q------NGIPNLRN-IGN-GTDSLS-MPF-GASNYTTTGNDYgene19138 EKEPMFTTVCS------GA---KGP-ILAAAS--ELDQDPNISRISK-EQ----------gene23280 SSGDDSSSCPEKTGNS--------------------------SDGSG-----------SA

AT1G19220-AtARF19 PFKPGCS---NEVGGINDSG--IMN--GGGLWPN--QTQRMRTYTKVQKRGS-VGRSIDVAT1G19850-AtARF5 PDNSGGTGTSSSNVDFDDCSLRQNS--KGSSWQK-IATPRVRTYTKVQKTGS-VGRSIDVAT1G30330-AtARF6 SGNLAMT---TPSSCIDESG--FLQ--SSENLGS--ENPQSNTFVKVYKSGS-FGRSLDIAT1G34170-AtARF13 -------------------------------------------LTKVHMQGVAISRAVDLAT1G34310-AtARF12 ----------K-------FGLSQTLRSPTEIQNKQ--FSSSRTCTKVQMQGVTIGRAVDLAT1G34390-AtARF22 ----------K-------FGQSQTLRSPTEIQSKQ--FSSTRTCTKVQMQGVTIERAVDLAT1G34410-AtARF21 ----------K-------FGQSQTLRSPIEIQSKQ--FSSSRTCTKVQMQGVTIGRAVDLAT1G35240-AtARF20 ----------K-------FGQSQTLRSPIEIQSKQ--FGSTRTCTKVQMQGVTIGRAVDLAT1G35520-AtARF15 ----------K-------FGQSQTLRSPTKIQSKQ--FSSTRTCTKVQMQGVTIGRAVDLAT1G35540-AtARF14 ----------K-------FGQSQILRSPTEIQSKQ--FSSTRTCTKVQMQGVTIGRAVDLAT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ----------IPSG--SGDPEKSSLRSPQESQ-----SRQIRSCTKVHMQGSAVGRAIDLAT1G77850-At1g77850 PKHSN--------SNAGSSSQG*-------------------------------------AT2G28350-AtARF10 ---------------EAEEEKGLVA--RGLTWNYSLQGL-ETGHCKVFMESEDVGRTLDLAT2G33860-AtARF3 -----------------------------ETTAVASATAVPCVEGNSMKGASAVQSN---AT2G46530-AtARF11 ----------Q---------DPNS----SNSPKEQKQQTSTRSRIKVQMQGTAVGRAVDLAT3G61830-AtARF18 ----------Q---------EPIT----PTSMSEQKKQQTSRSRTKVQMQGIAVGRAVDLAT4G23980-AtARF9 ----------K---------QEPAEGSPKEVQSKQ--SSSTRSRTKVQMQGVPVGRAVDLAT4G30080-AtARF16 ---------------FSSSDEGSPC----SKKVHDASGL-ETGHCKVFMESDDVGRTLDLAT5G20730-AtARF7 P---AIS---NDLA-VNDAG--VL---GGGLWPA--QTQRMRTYTKVQKRGS-VGRSIDVAT5G37020-AtARF8 ----------SLYSCMQDTTHELLH--GAGQI-N--SSNQTKNFVKVYKSGS-VGRSLDIAT5G60450-AtARF4 -----------------------------ETPASKPQSSSKRICTKVHKQGSQVGRAIDLAT5G62000-AtARF2 ----------ND---HREQGRPFQTNNP-HPKDAQTKTNSSRSCTKVHKQGIALGRSVDLgene06434 ----------DNLSAVNESDKQISQQHT-RDGQGKAQGSSTRSCTKVQKQGIALGRSVDLgene28545 -----------------------------ETPTL-SQSSSKRSCTKVHKQGSLVGRAIDLgene16050 ------------------------------------------------------------gene12917 PFKPGCS---SDVA-LNDAG--VL---NNGLWGS--QPQRMRTYTKVQKRGL-VGRCIDVgene31631 ----------SLYGCIQDST-ELLH--GAGQV-D--PPTPNCTFVKVYKSGS-VGRSLDIgene27792 -----------------ETSKSFSCV-HSETQSKKCCSVSNRSCIKVLKHGAALGRSVDLgene08492 ADNSGGTS--SSNVDLDESSLLQN-----NSWHQ-V-VPPVRTYTKVQKAGS-VGRSIDVgene16844 IEHWG--------SLEKS----------ALNKELHVLDL-DTGHCKVFMESEDVGRTLDLgene30394 SLNPA-V---TPSNCIDESG--FLQ--SPENVGH--ENQPNGNFVKVYKSGS-YGRSLDIgene29771 -----------------------------ETHAPNKVDNSTSVTSALESGASMFPNV---gene23072 ------------------------------------------------------------gene12224 TFQSID-------STINDSS--FLD--GGAPWAPAAQFQRMRTYTKVYKRGA-VGRSIDIgene29255 ----------LPSG--SCDAEKSSLRSPQESQ-----SRQIRSCTKVHMQGIAVGRAVDLgene02234 ------------------------------------------------------------gene25123 ----------K---------AQ-LQVSPKETLSKQSSSASTRSRVKVQMQGIAVGRAVDLgene09733 LHQQS--------VQERSSGEGFHW--YKDTRHEAEANL-ETGHCKVFMESEDVGRTLDFgene22728 PLNSD-M---TTSSCVDESG--FLQ--SSENVDQ--INPPTRTFVKVHKLGS-FGRSLDIgene19138 ----------M---------QLISEVPPIETQSKQGSTVSMRSRTKVHMEGVAVGRAVDLgene23280 LHRND--------SVENCSDG------------GSDHNL-ETGLCKVFVKSGDAG-TLDL

AT1G19220-AtARF19 TRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIAT1G19850-AtARF5 TSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIAT1G30330-AtARF6 SKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIAT1G34170-AtARF13 TAMHGYNQLIQKLEELFDLKDELR-T-RNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIAT1G34310-AtARF12 SVLNGYDQLILELEKLFDIKGQLQ-T-RNQWEIAFTDSDEDKMLVGDDPWPEFCNMVKKIAT1G34390-AtARF22 SVLNGYDQLILELEELFDLKGQLQ-T-RNQWEIAFTDSDDDKMLVGDDPWPEFCNMVKKIAT1G34410-AtARF21 SVLNGYDQLILELEKLFDIKGQLQ-T-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKIAT1G35240-AtARF20 SVLNGYDQLILELEKLFDLKGQLQ-T-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKIAT1G35520-AtARF15 SVLNGYDQLILELEKLFDLKGQLQ-T-RNQWKIIFTGSDEDEMLVGDDPWPEFCNMVKRIAT1G35540-AtARF14 SVLNGYDQLILELEKLFDLKGQLQ-A-RNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIAT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 TRSECYEDLFKKLEEMFDIKGELLES-TKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIAT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 SVIGSYQELYRKLAEMFHIEERSDL----LTHVVYRDANGVIKRIGDEPFSDFMKATKRLAT2G33860-AtARF3 --------H--HHS---------QG------RDIYAMRDMLLDIAL*-------------AT2G46530-AtARF11 TLLRSYDELIKELEKMFEIEGELS-P-KDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLAT3G61830-AtARF18 TLLKSYDELIDELEEMFEIQGQLL-A-RDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIAT4G23980-AtARF9 NALKGYNELIDDIEKLFDIKGELR-S-RNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIAT4G30080-AtARF16 SVLGSYEELSRKLSDMFGIK-KSEM----LSSVLYRDASGAIKYAGNEPFSEFLKTARRLAT5G20730-AtARF7 NRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWEEFVNCVQSIAT5G37020-AtARF8 SRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWYI

Page 31: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT5G60450-AtARF4 SRLNGYDDLLMELERLFNMEGLLRDP-EKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIAT5G62000-AtARF2 SKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIgene06434 TKFHNYDELIAELDQLFEFNGELMDP-KKNWLLVYTDDENDMMLVGDDPWQEFCGIVRKIgene28545 SKLNGYGDLLSELERLFSMEGLLRDP-DKGWRILYTDSENDVMVVGDDPWHEFCDVVSKIgene16050 ------------------------------------------------------------gene12917 TRYKGYDELRHDLARMFGIEGQLEDPQRTEWKLVYVDHENDILLVGDDPWEEFVSCVQSIgene31631 SRFSSYNQLREELAQMFGIEGKLEDCLRSGWQLVFVDREDDVLLLGDDPWESFVNNVWYIgene27792 TRFDGYGELVSELDQMFDFEGRLIDG-SSGWQITYMDDEGDMMLIGDYLWHEFLSMVRKMgene08492 TSYTNYEELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLVGDDPWE---------gene16844 SALGSYDELDRRLTIMFGLE-KPEM----LSHVLYRDPTGVVKQTGDEPFGIFKKAAKRLgene30394 TKFSSYHELRRELARMFGLDGELEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVNSVWCIgene29771 --------EPRFHSKPPSMNGHLTGV-EKGWKVVYKDSDNDTELVVTFHPEMLP------gene23072 ------------------------------------------------------------gene12224 TRYSGYDDLKHDLARRFGIEGQLEDRGRVGWKLVYVDHEKDVLLVGDDPWEEFVNCVRCIgene29255 TRFEGYEDLLKKLEEMFDIGGELSGS-TKKWQVVYTDDEDDMMMVGDDPWHEFCSMVRKIgene02234 ------------------------------------------------------------gene25123 TMLEGYEQLIVELEEMFDIKGQIG-P-RKKWEIVFTDDEGDMMLAGDDPWLEFCNMVRRIgene09733 SQFKSYDELYTKLADMFGIE-NSET----LNHVLYRDATGAVKHIGDEPFSDFVKTARRLgene22728 SKFSSYDELRSELGSMFGLEGQLEDPQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIgene19138 TALKGYDDLIDELEKMFEIKGELR-P-ANKWAVVFTDDENDMMLLGDYQWQDFCRTVKKIgene23280 SVFRSYQELYRKLANMFGKE-NSDM----LSNVLYRDATGAIRHTGDEPFR*--------

AT1G19220-AtARF19 KILSSV-EVQQMSLDGDLAAI-PTTNQACSETDSGNAWKVHYEDT--------S----AAAT1G19850-AtARF5 RILSPT-EVQQMSEEGMKLLNSAGI-NDLKTSVS*-------------------------AT1G30330-AtARF6 KILSPQ-EVQQMGKRGLELLN-SAPSSNNVDKLPSNGNCDDFG-NRSDPRNLGNGIASVGAT1G34170-AtARF13 FICSKE-EIKKMKLKNKFFQPESKALTSSDVPPNVTDN*---------------------AT1G34310-AtARF12 FIQKRR-*----------------------------------------------------AT1G34390-AtARF22 LIFKRG-GQKLEVQ*---------------------------------------------AT1G34410-AtARF21 LIYSKE-EVKNLKSSKSLSS*---------------------------------------AT1G35240-AtARF20 LIYSKE-EVKNLKSSKSLSS*---------------------------------------AT1G35520-AtARF15 YIQKRR-*----------------------------------------------------AT1G35540-AtARF14 FIYSKE-EVKNLKSRKSLSS*---------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 FIYTPE-EVKKLSPKNKLAVNARMQLKAD-AEENGNTEGRSS--S-------M-----AGAT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 TIKMDI-GGDNVRKTWITGIRT-GE-NGI-DASTKTGPLSIFA*----------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 FIYPSD-EVKKMRSKSLLGDKGTI-VNLE-----SDQRTVH-----------------V-AT3G61830-AtARF18 FIYSSD-EVKKMTTKLKISSSLEN---EE-----YGNESFE-----------------NRAT4G23980-AtARF9 FIWSKE-EVKKMTPGNQL-RMLLREVETT-----LTTTSKT-----------------DNAT4G30080-AtARF16 TILTEQ-GSESVVV*---------------------------------------------AT5G20730-AtARF7 KILSSA-EVQQMSLDGNFAGV-PVTNQACSGGDSGNAWRGHYDDN--------S----A-AT5G37020-AtARF8 KILSPE-DVHQMGDHGEGSGG-LFPQNPTHL*----------------------------AT5G60450-AtARF4 HLYTK-EEVEN-----ANDDNKSCLEQAA---LMMEASKSSSVSQ----PDSSP----TIAT5G62000-AtARF2 FIYTKE-EVRKMNPGTLSCRSEEEA-VVG---EGSDAKDAKSASN----PSLSS----AGgene06434 FIYTRE-EVQKMNPGTLTSLGEENPALPA---EGVDAREGKSQ*----------------gene28545 HIYTQ-EEVEKMTIGMISDDTQSCLEQAP---PMLEVSKSSSVGQ----PDSSP----TAgene16050 ------------------------------------------------------------gene12917 KILSSV-EVQQMSLDGDLGNV-PVPNQACSGTDSGNAWRPPYDDN--------S----A-gene31631 KILSPE-DVHKMGDQAVDSF---TPNAGQRVNSSAN-----------ETQDHISGLPSLGgene27792 FICPKDQEVDNLNPGSPNATSP*-------------------------------------gene08492 -ILSPK-EVQEMSEEGMKLLNSAAALQGMHTTVS*-------------------------gene16844 TILTCP-ANETIGRTWIRGMEN-AG-NGL-GASNKTAWGFLAVERDQ----HSGCVVSLAgene30394 KILSPQ-EVQQMGKRGLELLK-SVPMQRL-----SSNSCDDYGGSRQDSRNLSSGITSVGgene29771 QYYVRNTRLEDVVFA-PEDFRRSSITSKR---SIL*------------------------gene23072 ------------------------------------------------------------gene12224 KILSPQ-EVQQMSLDGDFGGNTVLPNQACSSSDGGNA*----------------------gene29255 FIYTAE-EVKRLSPKIKLPVGGEAKQGKPDSEAAINTEDGSSISS----L-VYP----GGgene02234 ------------------------------------------------------------gene25123 FICSSQ-DVKKISAGRKRLSMSSLEVEGT-----VTSLD*--------------------gene09733 TILMDS-GSNNVGM*---------------------------------------------gene22728 KILSPL-EVQQMGKEGLNSVA-SVPSQKQ---SNGNSTCDDYV-SRQDMRNSSNGIASLGgene19138 FIFSSD-HVQMLRQGKLKSSALLC--EEN-----VN-*----------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ASFNR*------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 GSFNY*------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 SR--*-------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 -----*------------------------------------------------------AT3G61830-AtARF18 SR--G*------------------------------------------------------AT4G23980-AtARF9 HS--N*------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 TSFNR*------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 TR--V*------------------------------------------------------AT5G62000-AtARF2 NS--*-------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 IR--V*------------------------------------------------------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene16050 ------------------------------------------------------------gene12917 ASFNR*------------------------------------------------------gene31631 SL-EY*------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ------------------------------------------------------------gene16844 SS--WNYIEG----GGIGSARQPSLAWRSFGFSLLVCDVVFGAMVVFHLALIRDGVQWSVgene30394 SLDTVEFLSKLRKGRKRGKVIVKHSPWTHGVN----TNTGENGME-----AYGVSIAWCHgene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 SH--GGCM--------NGHLKLP-KFFLLYEN----EGQGLAGLL-----V-LRAVIWYAgene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 S-LDY*------------------------------------------------------gene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------gene08492 ------------------------------------------------------------gene16844 WVATLIE-EKVFLFSGGFVDNNDGGWDVDSLPVAT-------------------LAKRCAgene30394 WCGLSVVWMDMWLFEG-WNG--DKG*----------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 WCVGRC-W--DWIVAE-FLP--NLTLFVRNLPPHTENFCISETSNISENRVLEFKLSRCCgene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 ------------------------------------------------------------gene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 ------------------------------------------------------------AT1G19850-AtARF5 ------------------------------------------------------------AT1G30330-AtARF6 ------------------------------------------------------------AT1G34170-AtARF13 ------------------------------------------------------------AT1G34310-AtARF12 ------------------------------------------------------------AT1G34390-AtARF22 ------------------------------------------------------------AT1G34410-AtARF21 ------------------------------------------------------------AT1G35240-AtARF20 ------------------------------------------------------------AT1G35520-AtARF15 ------------------------------------------------------------AT1G35540-AtARF14 ------------------------------------------------------------AT1G43950-AtARF23 ------------------------------------------------------------AT1G59750-AtARF1 ------------------------------------------------------------AT1G77850-At1g77850 ------------------------------------------------------------AT2G28350-AtARF10 ------------------------------------------------------------AT2G33860-AtARF3 ------------------------------------------------------------AT2G46530-AtARF11 ------------------------------------------------------------AT3G61830-AtARF18 ------------------------------------------------------------AT4G23980-AtARF9 ------------------------------------------------------------AT4G30080-AtARF16 ------------------------------------------------------------AT5G20730-AtARF7 ------------------------------------------------------------AT5G37020-AtARF8 ------------------------------------------------------------AT5G60450-AtARF4 ------------------------------------------------------------AT5G62000-AtARF2 ------------------------------------------------------------gene06434 ------------------------------------------------------------gene28545 ------------------------------------------------------------gene16050 ------------------------------------------------------------gene12917 ------------------------------------------------------------gene31631 ------------------------------------------------------------gene27792 ------------------------------------------------------------

Page 33: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene08492 ------------------------------------------------------------gene16844 AAGTQTWARVALDWIRPFLWVVALGPKWSMSERSTSSPANERPEMVATGGNLLCVGWTSQgene30394 ------------------------------------------------------------gene29771 ------------------------------------------------------------gene23072 ------------------------------------------------------------gene12224 ------------------------------------------------------------gene29255 LLGYL--CRILCKKIISFYIH------------EIPRPR*--------------------gene02234 ------------------------------------------------------------gene25123 ------------------------------------------------------------gene09733 ------------------------------------------------------------gene22728 ------------------------------------------------------------gene19138 ------------------------------------------------------------gene23280 ------------------------------------------------------------

AT1G19220-AtARF19 --------AT1G19850-AtARF5 --------AT1G30330-AtARF6 --------AT1G34170-AtARF13 --------AT1G34310-AtARF12 --------AT1G34390-AtARF22 --------AT1G34410-AtARF21 --------AT1G35240-AtARF20 --------AT1G35520-AtARF15 --------AT1G35540-AtARF14 --------AT1G43950-AtARF23 --------AT1G59750-AtARF1 --------AT1G77850-At1g77850 --------AT2G28350-AtARF10 --------AT2G33860-AtARF3 --------AT2G46530-AtARF11 --------AT3G61830-AtARF18 --------AT4G23980-AtARF9 --------AT4G30080-AtARF16 --------AT5G20730-AtARF7 --------AT5G37020-AtARF8 --------AT5G60450-AtARF4 --------AT5G62000-AtARF2 --------gene06434 --------gene28545 --------gene16050 --------gene12917 --------gene31631 --------gene27792 --------gene08492 --------gene16844 NDRLLQV*gene30394 --------gene29771 --------gene23072 --------gene12224 --------gene29255 --------gene02234 --------gene25123 --------gene09733 --------gene22728 --------gene19138 --------

gene23280 --------

Page 34: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

IAA genes

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 --------------------------MAAPPLEEAMVVLDRGRAGSH------------Pgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 MASIHYDIRCALLLHLATSSSSSPPSSSSPPSLSTIRTLSPHRIASRASVARRVLSSFSS

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 RFRLLF----------------------CALG------FYRAFVMLAIWRVKEKVEIHAEgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------

Page 35: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 PFTTSFRARAFSDEAAKEAVKLPEKPSICTADELHYVSVPNSDWRLALWRYRPCPKAPQ-

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 DGEPFVWVT-VKG--LQVGMRMEKVLAQLGNILGSFTQADPAALWCKEVVKIIELSELDEgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 RNHPLLLLSGVGTNAIGYDLSPELLLPHFREILGNLLEMENAASVS--------------

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------

Page 36: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 NGELSELGKNDDSCLDAPASCSILGNTIFNTIIPWAANYAVPSNFNASNATTPWLANCVAgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 ----------------------------------------SFARYMSGQGYETWVLEVR-

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 SSIYCTPNSYTNVIPGTVNGYNNVGAPNYTMAFMGYGSQYGSHSFSNPTISTPSVNLMNYgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 ----------------------------------GAGLS--VHESNK-------------

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------

Page 37: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 GPIHASTRFINPSVSTLHVSTMPHMYTSSPNAMTTSTSPSNMIMPFSQTSAS--PYMMNNgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 KEIQESAHAK--------SEQMESVSKGATNA---AFSAQNQSNSFSDTNAKSEPKEAVS

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 SQSSVGFYSPPNQSNNNHNNG----------NNNSKGNNYCKNVVCQICDKPSHTAYK--gene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 QSASNGAVSAQNRSNSFSDADAKSEQMEALSQNTTDGA-FPT--GEQLGSFPGASAFERP

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------

Page 38: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 ---CNQRNSYQSGEATRASVECQICKKPSYIAKTCKWRNANLNQNQQQSRNSVMLACDFNgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 VHKINDEISAAKGDLTSIPSVGGESKTVTRVTETFTEKSEQLSGFLGEGQSSIMSNNLLD

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 SNEGVWLVDFGAT---NHMTYDIGHLQNITSYAAVD----------SVQIGNGDKVTGQVgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 QISK-LFADSTLSERFNDISNKLSSLLETRQNSAIASQIRDLSQRLVNIIEEGQRSVSPS

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------

Page 39: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 LYEGE----------RAVSGVWVVFPWPYSRLQWSSGVGSDVVVVERRTAWARFVVGLAGgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 LFNLQERLSSTLEDFQKQLDLIVKYDWDFDHYLEE-----DI------PAVMDYIMAES-

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 VIGPAGLLGVGDDDAGLGNGLFGTSATLGSPNLLGCSIGVLTRVR------RTRSAVG-Lgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------

Page 40: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 KPKDGKLLAIGHSMGGI--LLYAMLSRCGSEGR-MCNLAAVVTLASSLDYTSSKSTLKLL

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ----------------------------------MSSGNDKIKQVL----------HI--AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 -----------------------------------MSPEEELQSNV----------S---gene05555 -----------------------------MSPP-LLGGEGEGKSNG----------S---gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ------------------------------------------------------------gene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 VPVSSDVGLDLQADKVRS--------NRTQSPTCQIIGSEKLHNTYTCRHRHKRPTRR--gene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 -----------------------------MSQPQVGAGEEEGSSDV----------T---gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 IPLAD-PAQALNVPVVPLGTLLAAAYPLSSRPPYVFSWLNDLISAQ----GMMHPELLEK

AT1G04100-AtIAA10 --------------------------------------------------MNG-------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ----MYCSDPPHPLHLVASD-----------------K----------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ----------------------------------------MEGYSRNGEISPKLLDLMIPAT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 EDLMSYRLLS------------------------------VDKDELV--TSPCLKERNYLAT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 -----------------------------------------------------------MAT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ----------------------------------------MEGCPRNREIGPKLLDLIP-AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 -----------------------------------------------------------MAT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 --------------------------------------------------MEG-------AT4G29080-AtIAA27 --------------------------------------------MSV--SVA--AEHDYIAT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ---VASSSPT------------------------------SNCISRN--TLGGLKEHNYLgene05555 ---MVACSPS------------------------------MEMIP-Q--NSSGLKERNYLgene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 ----------------------------------------------M--SMS--LEHDYIgene27891 --------------------------------------------------MEGTLGLLGGgene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------

Page 41: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene32595 VELIYYCCGGCVSLSIYLSHIVETNIISRRGHKKQRKKKKQKQKRER--AAL--HLHKYKgene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ----------------------------------------------------------MPgene09007 ----------------------------------------MGQFHN-------LAELHV-gene22779 -----------------------------MGLRAAA-HSSSSSIDSS--NHPDLDGLLIPgene26830 ---ALSSSLS------------------------------MDSV-CP--NSSDLKERNYMgene25723 ----------------------------------------------MEEACPQLLDLIP-gene25817 -------------MSV-----------------------------------P--LEHDYIgene05990 ------------------------------------------------------------gene05993 --------------------------------------------MDQ--SQPHLLLVDHIgene16979 ------------------------------------------------------------gene03675 LVLNNFCTIPAKLLLQLTTAFKEGGLRDRSGTYLYKDH----------------------

AT1G04100-AtIAA10 LQEVCSSSGSVMIGLPAEEDENAAHSSEDSSCPDESVSETELDLALGLSIGRRKVR--S-AT1G04240-AtIAA3 --------------------------------MDEFVNLKETELRLGLPGTDNVCE--AKAT1G04250-AtIAA17 ------------------------------MMGSVELNLRETELCLGLPGGDTVA-----AT1G04550-AtIAA12 ----------------MR--GVSELEVGKSNLP----AESELELGLGLSL----------AT1G15050-AtIAA34 -------------------------------------QQKDHKLILSWKKP---------AT1G15580-AtIAA5 -----------------------------MANESNNLGLEITELRLGLPGDIVVSG----AT1G51950-AtIAA18 QE------------------RRNWFHD--EKNSVFKTEEKKLELKLGPPGEEDDDE--SMAT1G52830-AtIAA6 -------------------------------MAKEGLALEITELRLGLPGDNYSEI--SVAT1G80390-AtIAA15 ---------------------MS--PEEYVRVWPDSGDLGGTELTLALPGTPTNAS--EGAT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 GLSDCSSVDS-------------STIPNVV--GKSNLNFKATELRLGLPESQSPER--ETAT2G33310-AtIAA13 --------------------MITELEMGK--------GESELELGLGLSLGGGTAA--KIAT2G46990-AtIAA20 GRGRSSSSSSIESSSKSNP----------FGASS-STRNLSTDLRLGLSFGTSSGT--QYAT3G04730-AtIAA16 -----------------------------------MINFEATELRLGLPGGNHGGE--MAAT3G15540-AtIAA19 -------------------------------MEKEGLGLEITELRLGLPGRDVAEK--MMAT3G16500-AtIAA26 -Q------------------GRKWYQE--DKNNT--DQEKKLELRLGPPGGDEEDH--SAAT3G17600-AtIAA31 --------MEVSNSCSSFSSSS--V---DSTKPSP--SESSVNLS----------L--S-AT3G23030-AtIAA2 ----------------------------MAYEKVNELNLKDTELCLGLPGRTEKIK--EEAT3G23050-AtIAA7 -------------------------------MIGQLMNLKATELCLGLPGGAEAVE--SPAT3G62100-AtIAA30 GRGRSSSSSSIESSCKSNP----------FGVSSSNTRNLSTDLRLGLSFGSSSGQ--Y-AT4G14550-AtIAA14 ------------------------------------MNLKETELCLGLPGGTETVE--SPAT4G14560-AtIAA1 ------------------------------MEVTNGLNLKDTELRLGLPGAQEE----QQAT4G28640-AtIAA11 G----SASGS---ASALSNDENLVVSCEDSSSP----IGNELELGLTLSLGRKGYR--D-AT4G29080-AtIAA27 GLSEFPTMEATTMSD-----------KTKTRDNNNGLNFKATELRLGLPGSESPER--VDAT4G32280-AtIAA29 -----------------------------------------MELDLGLSLSPHKSSKLGFAT5G25890-AtIAA28 -----------------------------------MEEEKRLELRLAPPCHQFTSN--N-AT5G43700-AtIAA4 ---------------------ME--K---VDVYDELVNLKATELRLGLPGTEET------AT5G65670-AtIAA9 GLSDCSSVGS-------------STLSPLAEDDKATISLKATELTLGLPGSQSPAR--DTgene05555 GLSDCSSVDS-------------STVSSLSEENKSKFNFKATELRLGLPGSQSPER--QSgene16569 -----------------------------MAFQAEDLNLEATELRLGLPGTKETEQ--Q-gene16571 ---------------------MGGGVTV-EDRNYSLINFEETELRLGLPGALKDGD--QGgene11861 GLSESMEA--------------------SDKGGAAAWNLKATELRLGLPGSESPKR--DSgene27891 GSSGCCTNESAMSKVDHQ--VVEHMSSEVSSYP----AEAELELGLGLSLGTGSGG--GSgene31097 -----------------------------------------MELQLGLALPANNDFPVKGgene30941 ----------------------------------MAMSYKDTELTLGLPGGGSRGY--STgene32593 ---------------------ME--S--KGYENDLNLNLKATELRLGLPGSDASEE--QAgene32595 RKHTDTHRLFLSEHLSST---VAQLVSMEVVIRKMNLNFKETELCLGLPGGAALTT--EPgene08191 ---------------------ME--GSVSYESHDEQLNFKATELRLGLPGSGIEES--AAgene08194 ---------------------------------------METELRLGLPGGGGGGG--GGgene08336 SATGSVTDMSIV-----S--KDDNLSSEDSCNP----DESELELNLGLSLGGGAAK--A-gene09007 SE------------------EMSVRAN--KRSCGMASEDKKLELRLGPPGDQDHSG--HSgene22779 KPSGSSSSSSLSHKIKIFNGGTNSR---NSRRSSHTRTDLSTDLRLGLSISPYHHS--D-gene26830 GLSDCSSVDS-------------SKGSDV-DGSKSRLNLMATELRLGLPGSQSPER--NSgene25723 -K------------------EREWLVS--KDESHGYSEEKKLELRLCPPGQDWSNL--RDgene25817 GLAETYPMERSSDRISSS---SSSAHSSTEDVKTSAFNLKETELRLGLPGSQSPER--KPgene05990 -------------------------------MEKEGLGLEITELRLGLPSGPSLGD----gene05993 HF---PPTQ-----K------PSKMSPENEQHSPAGLNYDETKLTLGLPGSG--------gene16979 ------------------------------------------------------------gene03675 -------------------------------------IHKSNVPILALAGD---------

AT1G04100-AtIAA10 ----------------------------------------------SL------------AT1G04240-AtIAA3 ER--------------------------------VS-CCNNNNKRVLSTDT---EK----AT1G04250-AtIAA17 --------------------------------------PVTGNKRGF-------------AT1G04550-AtIAA12 -------------------------------------GGGAWKERGRILTAKDFPSVGS-AT1G15050-AtIAA34 -------------------------TMDSD-------------------PLGVFPN--SPAT1G15580-AtIAA5 -------------------------------------ESISGKKRASPEV----------AT1G51950-AtIAA18 --------IR----------------------------HMK-------------------AT1G52830-AtIAA6 C------------------------------------GSSKKKKRVLSDM-MTSSALD-TAT1G80390-AtIAA15 -------------------------------------PKKFGNKRRFLETVD--------AT2G01200-AtIAA32 -------------------------MDPNT-------------------PADFFKG--SSAT2G22670-AtIAA8 DFGLLSPRTPDEK----LLFPLLPSKDNGSATTGHK-NVVSGNKRGFADTWDEFSGVKGSAT2G33310-AtIAA13 GKSG---------------------------------GGGAWGERGRLLTAKDFPSVGS-AT2G46990-AtIAA20 F-----------------------------------------------------------AT3G04730-AtIAA16 --------------------------------------GKNNGKRGF-------------AT3G15540-AtIAA19 K------------------------------------------KRAFTEMNMTSSGSNSDAT3G16500-AtIAA26 IKKKNTE-IR----------------------------NIK-------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 QE--------------------------------VS-CVKSNNKRLFEETR---D-----AT3G23050-AtIAA7 AK------------------------------------SAVGSKRGF-------------AT3G62100-AtIAA30 Y-----------------------------------------------------------AT4G14550-AtIAA14 AK------------------------------------SGVGNKRGF-------------AT4G14560-AtIAA1 LE--------------------------------LS-CVRSNNKRKNNDS----T-----AT4G28640-AtIAA11 ----------------------------------------------CRVYADD-------AT4G29080-AtIAA27 SRFLAL--------------------------NKSS-CPVSGAKRVFSDAIND-------AT4G32280-AtIAA29 NFDLNKH----------------------CAIEGAA-SCLGTEKLRFEATFGL-GNVEENAT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 -----------------------------------V-SCGKSNKRVLPEAT---EK----

Page 42: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT5G65670-AtIAA9 ELNLLSPAKLDEK----PFFPLLPSKDEI-CSSSQK-NNASGNKRGFSDTMDQFAEAKSSgene05555 ELCL-----LDEK----PLFPLLPSKDGI-CSSSQK-NVVSGNKRGFSDTMDGFSEVKSSgene16569 ---------------------------------------KTNNKRALPVEH---ES----gene16571 VK------------------------------------SCSSGKRGF-------------gene11861 VEDKTG--------------------------FSLK-PCVSGAKRVFSDAIDGA------gene27891 AQKP---------------------------------KGCAWGERGRILTAKDFPSMVS-gene31097 GLDLNIN----------------------DFLYHPTDGSNKNKKRSFTQAFDP-SI-ASAgene30941 GGGV----------------------------------YGELMKRGFIETLDDPHDLDLLgene32593 AA--------------------------------PV-PSTLNKKRVVPEKS---EE----gene32595 EICT----------------------------------PKATGKRGF-------------gene08191 SP--------------------------------PP----STKKRASPEQDSADNE----gene08194 GGGE---------------------------GGGDQ-VVVMMRKRVFSETESQITTDDESgene08336 -------------------------------------HQGPIGSYARILTAKDFRYVGL-gene09007 Q---------------LGFITSDPEAKRVC-------HESQ--VKGKNEE----------gene22779 ------------------------------------------------------------gene26830 ELRLIST-QPDEK----PLFPLHPVKDSL-----QK-TIVSGNKRGFSDAMDEFSEGKYAgene25723 NTSRGQK-ERDESLLSLGYFYNSSSSGNQT-------HHFASSERKTVLS----------gene25817 GLALSIFGKDLED----NK------QNGYPPNPSKT-NPVSGAKRGFSDAIDGS------gene05990 --------------------------------------NIKEKKRVFSEINGGGDGNGA-gene05993 ------------------------------------------SKRVFSETA---------gene16979 ------------------------------------------------------------gene03675 -------------------------KDSICPPEAVE-ETVKV-IPKHLVTYKVFGESGGA

AT1G04100-AtIAA10 ------------------------SSSSSS------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 S----ETVDLKLN------------LNNEPANKE-GSTT----HDVV-------------AT1G04550-AtIAA12 ----------KRSAESSS------------------------------------------AT1G15050-AtIAA34 KYH---------------------PYYSQTT---EFGGV---IDLGLSLRT--I------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------KEPKDKSILSLAG----KYFSPSS------------------AT1G52830-AtIAA6 E--------------------------NE-------------------------------AT1G80390-AtIAA15 ---------LKLGE----------------------------------------------AT2G01200-AtIAA32 KFH---------------------TYYSQTK---KGGGV---IDLGLSLRT--I------AT2G22670-AtIAA8 VRP-GGGIN-----------------------------------MMLSPKVK--------AT2G33310-AtIAA13 ----------KRAADSAS------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 S----ETVDLKLN------------LSSTAMDSV-S-KV----DL---------------AT3G15540-AtIAA19 Q--------------------------CE-------------------------------AT3G16500-AtIAA26 ------------------KETEDKSFHCFNG----NHFSPSN------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 S----ETVDLMLN------------LQSNKE----GS-V----DLKN-------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 S----ETVDLKLN------------LQSNKQ----GH-V----DLNT-------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ---------------------SSSSSSSSS------------------------------AT4G29080-AtIAA27 S----NKWVFSPGSTTA--TGDVGSGSGPR------------------TSVVKDGKSTTFAT4G32280-AtIAA29 CYMPKQRLFALNGQ----------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 VYT-EKNWMFPEAAATQ---------SVTKKDVPQN----------------------I-gene05555 VYN-EGKWMFPAAAGSD---------SESPESVGQGKFPVSSINVMLSSRTSGTQPTNLVgene16569 ------------------------------------------------------------gene16571 S----ETVDLKLN------------FSSENDDVS-RSGR---DGQ-V-------------gene11861 S----GKWVFSGSGGSEAELGKGGSLVSPRGVNG-GKGL---AGSECKSQQISAVKDGVLgene27891 ----------HGSARFSQRANNASSVS---------------------------------gene31097 AVPRKLPWLLWNNQ----------------------------------------------gene30941 SST-GEEFR---------------------------------------GQVKPED-----gene32593 ------------------------------------------------------------gene32595 S----ETVDLKLN------------LHANEG----LMNE----SVKN-------------gene08191 ------------------------------------------------------------gene08194 S----ACVDLKLN------------LSSKDGSST-AEKS---KSLMM-------------gene08336 ----------NKSDKSSAEVGSSSSSSSSS------------------------------gene09007 -----TKWLANTA----QHQPKSSYFKCP-----------------M----IPHPDKKACgene22779 ------------------------------------------------------------gene26830 NTD-VNLLMSPRPSPNL---------GLKSGSVPENHGT-------QEPKMKEIVSQKIIgene25723 -----SPWSSSPSGY-PNNQTKGPSFL---------QFSPSSQSLPV----TQMTSQPCCgene25817 S----EKWVFRMSNGSEADKGP--ALFSPKGDSN-AK-T---QQLCVSGQTKKEVAASVVgene05990 ------------------------------------------------------------gene05993 -----TTVDLNLGSSCS----------SS-------------------------------gene16979 ------------------------------------------------------------gene03675 HYA-H--YDLVGGR---------MSVHYEAK---ENEGI---IDLGLSLRA--L------

AT1G04100-AtIAA10 -----LTRE---SGTKRSADSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGAT1G04240-AtIAA3 -----EI------ESSSR----KTETSPPRKAQIVGWPPVRSYRKNNIQSKKNESE----AT1G04250-AtIAA17 -----TF------DSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMVSCQKS------AT1G04550-AtIAA12 -------------HQGASP--------PRS-SQVVGWPPIGLHRMNSLVNNQAMKAARAEAT1G15050-AtIAA34 -------------QHEIYHS-SGQ------------------------------------AT1G15580-AtIAA5 --------------------EIDLKCEPAKKSQVVGWPPVCSYRRK-NSLER--------AT1G51950-AtIAA18 ----------------TK----TTSHKRTAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTAT1G52830-AtIAA6 -----------NSVVSS----VEDESLPVVKSQAVGWPPVCSYRRKKNNEEA--------AT1G80390-AtIAA15 ------------------AHENNYISSMVTNDQLVGWPPVATARKTVRRK----------AT2G01200-AtIAA32 -------------QHETYLP-PARMIGLDGYGELIDWSQPSYNSITQLKSEDTGHQRLA-AT2G22670-AtIAA8 -----DVSKSI--QEERSHAKGGLNNAPAAKAQVVGWPPIRSYRKNTMASSTSKNTDEV-AT2G33310-AtIAA13 -------------HAGSSP--------PRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEAT2G46990-AtIAA20 ------------NGGYGYS------VAAPAVEDAE--------YVAAVEEEE--------AT3G04730-AtIAA16 ------------------ENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEAT3G15540-AtIAA19 -----------SGVVSSGGDAEKVNDSPAAKSQVVGWPPVCSYRKKNSCKEA--------AT3G16500-AtIAA26 ----------------KTTSVPHISQKRTAPGPVVGWPPVRSFRKNLASTSSSKLGNESSAT3G17600-AtIAA31 ---------------LTFP------STSPQREARQDWPPIKSRLRDTLKGRR--------AT3G23030-AtIAA2 ----------------------EEESTPPTKTQIVGWPPVRSSRKNN--N----------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT3G23050-AtIAA7 -----VS------AVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEAAT3G62100-AtIAA30 ------------NGGDNHE------Y--DGVGAAE--------EMMIMEEEE--------AT4G14550-AtIAA14 ------N------GAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEA-AT4G14560-AtIAA1 ----------------------EESAPPPAKTQIVGWPPVRSNRKNNNNK----------AT4G28640-AtIAA11 -----LSRASVIAGIKRTADS-----MAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPAT4G29080-AtIAA27 TKPAVPV------KEKK-----SSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSAT4G32280-AtIAA29 ---PNEED-----EDPLESESSIVYDDEEENSEVVGWPPVKTCMIKYGSYHHRHIRNHHHAT5G25890-AtIAA28 -------NINGSKQKSSTKETSFLSNNRVEVAPVVGWPPVRSSRRNLTAQLKEE------AT5G43700-AtIAA4 -----EI------ESTGK-----TETASPPKAQIVGWPPVRSYRKNNVQTKKS--E----AT5G65670-AtIAA9 ---PKG----------QSSTTNNSSSPPAAKAQIVGWPPVRSYRKNTLAT-TCKNSDEV-gene05555 TNSSKDQSKTANGASQNHAVASNNSSAPAAKAQVVGWPPIRSFRKN-LTT-ASKNSDEV-gene16569 -----NA--------------SSAPKPPPSKAQVVGWPPVKSYRKNCFEAKKT--E----gene16571 -------------EIKK-EKDASAAPAPRAKAQVVGWPPVRSFRKNIVAVQKKSTDQDQAgene11861 QQSPNPL------HEKK-----PQVSAPAAKAQVVGWPPIRSFRKNSMASIPSKKDDD--gene27891 --------GNKRAAEEGGS--------PTAVSQVVGWPPISAARMNSLVNQAKAARSEDDgene31097 ---PNDDD-----DDDTGHSSRYTNMIKNEEDGLVGWPPITSWRKET-CFH---IQ----gene30941 -----EQSEAA--NYSSIRNSTTAVKAPTAKDQVVGWPPVRSTRNKALDSKNLK------gene32593 -----EI------GSKRGTDDAEKITAPPAKAQIVGWPPVRSYRKNCLQASKN-SE----gene32595 -----VS------SREKNLPCIKDPAKPPAKAQVVGWPPVRSFRKNVMAQKSTGEESST-gene08191 -----EC------RSSTTDDETPDLTSRPSKTQVVGWPPIRSYRKNAMQA----------gene08194 -----NK------NKEKNVDLPADPAKPPAKAQVVGWPPVRSFRKNMLSAQKSSTTDES-gene08336 -----LSSVNVAAGTKRSA--------DSVANQPVGWPPIRTYRMNSLVHQAKSSATEVVgene09007 SVPAT---ASKFPTSAAANGSDEKSKSRISQAPVVGWPPVRSFRKNLANKSSLAKPASDQgene22779 ---------------LSST------TSSPREEALLSWPPIKSILRCTLSGKA--------gene26830 QECPQT-------ATETGPNHTITTSVPANKAQVVGWPPIRSFRKNSLAS-LSKNADEV-gene25723 TEAVDLQNAEKKKASANPAVTNNTSQKRTAPAPVVGWPPIRSFRKNLASTSASKPAPESQgene25817 PQSPKPV------QEKQKAKVSEHVTPPAAKAQVVGWPPIRSFRKNTMASNLAKNNDDAEgene05990 --------------NT--TGDRDDYRKGQAKSQVVGWPPVCSYRRKVNSLSE--------gene05993 ---------------TTTVDDEVKTQKPTAKAQVVGWPPVRGSRRNLMK-----------gene16979 ---------------------MNYFQSQRQDSLKRRWQEIRRSSATTQPSSDM-----ITgene03675 -------------QPETYHHSSAHLVSLEGYDGLIDWPQANNLNLKNVNVISP---RAM-

AT1G04100-AtIAA10 LSSGIQ-KET-T-KSVVVAAKN--DDA--CFIKSSRTSMLVKVTMDGVIIGRKVDLNALDAT1G04240-AtIAA3 ---------------------------------HEGQGIYVKVSMDGAPYLRKIDLSCYKAT1G04250-AtIAA17 -------------------------------SGGPEAAAFVKVSMDGAPYLRKIDLRMYKAT1G04550-AtIAA12 EG-DGE-KKV------VKNDELKDVSM--KVNPKVQGLGFVKVNMDGVGIGRKVDMRAHSAT1G15050-AtIAA34 --------------------RYCS-----N-EGYRRKWGYVKVTMDGLVVGRKVCVLDHGAT1G15580-AtIAA5 -----------------------------------TKSSYVKVSVDGAAFLRKIDLEMYKAT1G51950-AtIAA18 TSN----------GVTLKNQKCDAAAK--TTEPKRQGGMFVKINMYGVPIGRKVDLSAHNAT1G52830-AtIAA6 -------------------------------S---KAIGYVKVSMDGVPYMRKIDLGSSNAT1G80390-AtIAA15 ---------------------------------------YVKVALDGAAYLRKVDLGMYDAT2G01200-AtIAA32 -------------------QGYYN-----NEGESRGKYAYVKVNLDGLVVGRKVCLVDQGAT2G22670-AtIAA8 ------------------------------DGKPGLGVLFVKVSMDGAPYLRKVDLRTYTAT2G33310-AtIAA13 EE-AGK-KK-------VKDDEPKDVTK--KVNGKV-QVGFIKVNMDGVAIGRKVDLNAHSAT2G46990-AtIAA20 -----------------------------ENECNSVGSFYVKVNMEGVPIGRKIDLMSLNAT3G04730-AtIAA16 GNDKTS-GS--------------SGAT--SSASACATVAYVKVSMDGAPYLRKIDLKLYKAT3G15540-AtIAA19 -------------------------------STTKVGLGYVKVSMDGVPYLRKMDLGSSQAT3G16500-AtIAA26 HGG----------QINKSD----DGE---KQVETKKEGMFVKINMDGVPIGRKVDLNAYNAT3G17600-AtIAA31 -----------------------------LLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSAT3G23030-AtIAA2 ------------------------------------SVSYVKVSMDGAPYLRKIDLKTYKAT3G23050-AtIAA7 SSEKAG-NF----------------------GGGAAGAGLVKVSMDGAPYLRKVDLKMYKAT3G62100-AtIAA30 -----------------------------QNECNSVGSFYVKVNMEGVPIGRKIDLLSLNAT4G14550-AtIAA14 --------M----------------------SSGGGTVAFVKVSMDGAPYLRKVDLKMYTAT4G14560-AtIAA1 ------------------------------------NVSYVKVSMDGAPYLRKIDLKMYKAT4G28640-AtIAA11 NLE-------------ISQAVN--KNR--SDSTKMRNSMFVKVTMDGIPIGRKIDLNAHKAT4G29080-AtIAA27 ETE---------------------EAE--AKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKAT4G32280-AtIAA29 CPYHHRGRRITAMNNNISNPTTATVGSSSSSSISSRSSMYVKVKMDGVAIARKVDIKLFNAT5G25890-AtIAA28 -------------------------MK--KKESDEEKELYVKINMEGVPIGRKVNLSAYNAT5G43700-AtIAA4 ---------------------------------SEGQGNYVKVSMDGAPYLRKIDLTMYKAT5G65670-AtIAA9 ------------------------------DGRPGSGALFVKVSMDGAPYLRKVDLRSYTgene05555 ------------------------------DGKPGRGALFVKVSMDGAPYLRKVDLRTYGgene16569 ---------------------------------GESGGMFVKVSMDGAPYLRKMDLKVYKgene16571 A-------------------------E--KSGSTSTSAAFVKVSMDGAPYLRKVDLKLYQgene11861 -----------------------------AEGKMGAGCLYIKVSMDGAPYLRKVDLKTYGgene27891 KT-DGD-KSKDT----FKKKINTGNNK--STVKEKGHLGFVKVNMDGIPIGRKVDLNAHTgene31097 --GDGGGRR----------P--------RTVRVNGGGSTFVKVKMEGVGIARKIDLSQHQgene30941 ---------------------------------NISSSKYVKVGADGAPYLRKVDLEMYTgene32593 ---------------------------------AETPGIYVKVSMDGAPYLRKIDLKVYKgene32595 ---------------------------------TTEKAAFVKVCMDGAPYLRKVDLKMYKgene08191 ---------------------------------------YVKVSVDGAPYLRKIDIKVYKgene08194 --------------------------------KAGGNAALVKVSMDGAPYLRKVDLNMYKgene08336 NSEKGE-CKIVSGKAKIGGQENNGN-A--KERQRLTSSLFVKVNMDGSPIGRKVNLTAHSgene09007 SPH----------E-TLK---EESKGK--SVDCNTKEHMFVKINMEGVPIGRKINLKAYDgene22779 -----------------------------ENFHHQNSSLFVKVYMEGIPIGRKLNLFAHDgene26830 ------------------------------DGKPGPGVLYVKVSMDGAPYLRKVDLKHYSgene25723 NVN----------PSKV-------PNV--KPVETSRKGMFVKINMDGVPIGRKVDLSAYAgene25817 -------------------------------GKQGSGCLYVKVSMDGAPYLRKVDLKMYNgene05990 -----------------------------------TSKMYVKVSMDGAPFLRKLDLGMHSgene05993 ------------------------------------SCKYVKVAVDGAPYLRKMDLEMCKgene16979 NPN---------------GALNCFPGLLGDDDLVSTLVPPVNVVLEGRSICQRICLQKHTgene03675 -------------------PEACDEEA--EGVQSKERWAYVKVNMDGIVIGRKVCVLDHS ::: * ::: :

AT1G04100-AtIAA10 SYAALEKTLDLMFFQIPSPVTR-SNTQGYK---TIKETCTSKLLDGSSEYIITYQDKDGDAT1G04240-AtIAA3 GYSELLKALEVMFK-FSVGEYF--E-------------RD-GY--KGSDFVPTYEDKDGDAT1G04250-AtIAA17 SYDELSNALSNMFSSFTMGKHG--GEEG--MIDFMNERKLMDLV-NSWDYVPSYEDKDGDAT1G04550-AtIAA12 SYENLAQTLEEMFFGMTGTT-------------CREKVKPLRLLDGSSDFVLTYEDKEGDAT1G15050-AtIAA34 SYSTLAHQLEDMFGMQSVSGL--------------------RLFQMESEFCLVYRDEEGLAT1G15580-AtIAA5 CYQDLASALQILFGCYINFDD---------------------TL-KESECVPIYEDKDGDAT1G51950-AtIAA18 SYEQLSFTVDKLFRGLLAAQRDFP-------SSIEDEKPITGLLDGNGEYTLTYEDNEGDAT1G52830-AtIAA6 SYINLVTVLENLFGCLGIGVA--------------------KEG-KKCEYIIIYEDKDRDAT1G80390-AtIAA15 CYGQLFTALENMFQGIIT-I-----------------CRVTELE-RKGEFVATYEDKDGD

Page 44: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT2G01200-AtIAA32 AYATLALQLNDMFGMQTVSGL--------------------RLFQTESEFSLVYRDREGIAT2G22670-AtIAA8 SYQQLSSALEKMFSCFTLGQCG---LHGAQGRERMSEIKLKDLL-HGSEFVLTYEDKDGDAT2G33310-AtIAA13 SYENLAQTLEDMFFRTNPGTV----GL------TSQFTKPLRLLDGSSEFVLTYEDKEGDAT2G46990-AtIAA20 GYRDLIRTLDFMFNASILWAE--------EEDM-----------CNEKSHVLTYADKEGDAT3G04730-AtIAA16 TYQDLSNALSKMFSSFTIGNYG---PQG--MKDFMNESKLIDLL-NGSDYVPTYEDKDGDAT3G15540-AtIAA19 GYDDLAFALDKLFGFRGIGVAL-------------------KDG-DNCEYVTIYEDKDGDAT3G16500-AtIAA26 SYEQLSFVVDKLFRGLLAAQRDIS-------DGQGEEKPIIGLLDGKGEFTLTYEDNEGDAT3G17600-AtIAA31 GYESLLENLSHMFDTSIICGN--------RD---------------RKHHVLTYEDKDGDAT3G23030-AtIAA2 NYPELLKALENMFK-VMIGEYC--E-------------RE-GY--KGSGFVPTYEDKDGDAT3G23050-AtIAA7 SYQDLSDALAKMFSSFTMGNYG---AQG--MIDFMNESKLMNLL-NSSEYVPSYEDKDGDAT3G62100-AtIAA30 GYHDLITTLDYMFNASILWAE--------EEDM-----------CSEKSHVLTYADKEGDAT4G14550-AtIAA14 SYKDLSDALAKMFSSFTMGSYG---AQG--MIDFMNESKVMDLL-NSSEYVPSYEDKDGDAT4G14560-AtIAA1 NYPELLKALENMFK-FTVGEYS--E-------------RE-GY--KGSGFVPTYEDKDGDAT4G28640-AtIAA11 CYESLSNTLEEMFLKPKLGSRT-LETD------GHMETPVKILPDGSSGLVLTYEDKEGDAT4G29080-AtIAA27 SYLELSSALEKMFSCFTIGQFG---SHGGCGRDGLNESRLTDLL-RGSEYVVTYEDKDSDAT4G32280-AtIAA29 SYESLTNSLITMFTEYEDCDR------------------------EDTNYTFTFQGKEGDAT5G25890-AtIAA28 NYQQLSHAVDQLFSKK-------------------------DSWDLNRQYTLVYEDTEGDAT5G43700-AtIAA4 QYPELMKSLENMFK-FSVGEYF--E-------------RE-GY--KGSDFVPTYEDKDGDAT5G65670-AtIAA9 NYGELSSALEKMFTTFTLGQCG---SNGAAGKDMLSETKLKDLL-NGKDYVLTYEDKDGDgene05555 TYQELSSALEKMFSCFTIGQYG---SHGAPGRERLSESKLRDLL-HGSEYVLTYEDKDGDgene16569 GYPELLKALEEMFK-FKVGEYC--E-------------KELGYN-NRSEFVPTYEDKDGDgene16571 SYQELSTALGKMFSSFTIGNCG---SQG--MKDFMNESKLIDLL-NGSEYVPSYEDKDGDgene11861 SYVDLSLALEKMFSCFTIGQCG---PHGVSSQDGMSESRLMDLL-HGAEYVLTYEDKDGDgene27891 CYETLAQTLEEMFFSTTSNVNS-IAGD------KEQATKPSRLLDGSSEFVLTYEDKEGDgene31097 GFHTLLRTLMHM---FDKCEM------------------------DSDNYKLTYQDREGDgene30941 SYEELLTAMEKIFTSFTINGKQYMEDDRKQQVLLMKHAVVNGMV-EYNQYVLTYEDKDNDgene32593 GYPDLLKGLESMFK-FTVGQYT--E-------------RE-GY--KGSDYAPTYEDKDGDgene32595 SYKELSDALSKMFSSFTTGYYG---AQG--MIDFMNESKLMDLL-NSTEYVPTYEDKDGDgene08191 SYPELLKALEEMFK-LTIGSYS--E-------------RE-GY--NGSEFAPTYQDKDGDgene08194 TYPQLSDALAKMFSSFTIGNCG---SQG--TIDFMNERKLMDLL-NDSDYIPTYEDKDGDgene08336 SYEALAQTLEDMFQGPSSNAKL-IRAGGQEHDMMVGETTPSKLLDGSFDFALTYEDKEGDgene09007 SYEKLSSAIDHLFQGLLAAQRDYSA--VEKENK-EE------TKTISDSYTLLYEDNEGDgene22779 GYDALITSLSLMFKTTILCPD--------NNHV-----------HSEKYHVLTYEDQEGDgene26830 AYQELSSALEKMFSCFTIGQYV---SHGARGRE-ISESKLKDLL-HGSEYVLTYEDKDGDgene25723 SYEKLSSAVDELFRGLLAAQRDSCA--GGIKNNIDEEKEITGLLDGSGEYTLVYEDNEGDgene25817 NYMELSMALEKMFSCFIIGQCS---SNGFPKKDGLSESRLMDLL-HGSEYVLTFEDKDDDgene05990 CYADLVVALEKLFGCFGIGEVL-------------------KDA-DSCEFAPIYEDKDGDgene05993 SYQQLLGALEDLFSFLTIR-------------KDMNERKLMDLA-NGVEYVPTYEDRDGDgene16979 SYTSLAKALRQMFVDGGDVGAA---------TAADIDSKDLDLSNAVPGHVIAYEDMENDgene03675 GYSSLAFQLEDMFGRQSVSGL--------------------RLFQVGSDFSLFYKDRDDN : * : : : :

AT1G04100-AtIAA10 WMLVGD--VPWQMFLGSVTRLRIMKTSIGAGVGK--*-----------------------AT1G04240-AtIAA3 WMLIGD--VPWEMFICTCKRLRIMKGSEAKGLGC--GV*---------------------AT1G04250-AtIAA17 WMLVGD--VPWPMFVDTCKRLRLMKGSDAIGLAP--RAME--------------------AT1G04550-AtIAA12 WMLVGD--VPWRMFINSVKRLRIMGTSEASGLAP--RRQEQKDRQ---------------AT1G15050-AtIAA34 WRNAGD--VPWNEFIESVERLRITRRNDAVLPF*--------------------------AT1G15580-AtIAA5 WMLAGD--VPWEMFLGSCKRLRIMKRSCNRG*----------------------------AT1G51950-AtIAA18 KMLVGD--VPWQMFVSSVKRLRVIKTSEISSALTYGNGKQ--EKM---------------AT1G52830-AtIAA6 WMLVGD--VPWQMFKESCKRLRIVKRSDATGFGLQQD*----------------------AT1G80390-AtIAA15 LMLVGD--VPWMMFVESCKRMRLMKTGDAIGL*---------------------------AT2G01200-AtIAA32 WRNVGD--VPWKEFVESVDRMRIARRNDALLPF*--------------------------AT2G22670-AtIAA8 WMLVGD--VPWEIFTETCQKLKIMKGSDSIGLAP--GAVE--------------------AT2G33310-AtIAA13 WMLVGD--VPWRMFINSVKRLRVMKTSEANGLAA--RNQEPNERQ---------------AT2G46990-AtIAA20 WMMVGD--VPWEMFLSTVRRLKISRANYHY*-----------------------------AT3G04730-AtIAA16 WMLVGD--VPWEMFVDSCKRIRIMKGSEAIGLAP--RALE--------------------AT3G15540-AtIAA19 WMLAGD--VPWGMFLESCKRLRIMKRSDATGFGLQPRGVDE*------------------AT3G16500-AtIAA26 KMLVGD--VPWQMFVSSVKRLRVIKSSEISSALTFGCSKQ--EKM---------------AT3G17600-AtIAA31 WMMVGD--IPWDMFLETVRRLKITRPER-Y*-----------------------------AT3G23030-AtIAA2 WMLVGD--VPWDMFSSSCKRLRIMKGSDAPALDS--SL*---------------------AT3G23050-AtIAA7 WMLVGD--VPWEMFVESCKRLRIMKGSEAVGLAP--RAME--------------------AT3G62100-AtIAA30 WMMVGD--VPWEMFLSSVRRLKISRA-YHY*-----------------------------AT4G14550-AtIAA14 WMLVGD--VPWPMFVESCKRLRIMKGSEAIGLAP--RAME--------------------AT4G14560-AtIAA1 WMLVGD--VPWDMFSSSCQKLRIMKGSEAPTAL*--------------------------AT4G28640-AtIAA11 WMLVGD--VPWGMFIGSVRRLRIMKTSEATGKDD--IMKQIIIYEEP--FMFE-----AVAT4G29080-AtIAA27 WMLVGD--VPWEMFICSCKKLRIMKSSEAIGLAP--RVME--------------------AT4G32280-AtIAA29 WLLRGD--VTWKIFAESVHRISIIRDRPCAYTRC----LF*-------------------AT5G25890-AtIAA28 KVLVGD--VPWEMFVSTVKRLHVLKTSHAFSLSPRKHGKE--*-----------------AT5G43700-AtIAA4 WMLVGD--VPWEMFVSSCKRLRIMKGSEVKGLGC--GGL*--------------------AT5G65670-AtIAA9 WMLVGD--VPWEMFIDVCKKLKIMKGCDAIGLAAAPRAME--------------------gene05555 WMLVGD--VPWEMFIDSCKRLKIMKGSDAIGLA--PRSME--------------------gene16569 WMLLGD--VPWEMFFTSCKRLRIMKGSEAKGLGC--AV*---------------------gene16571 WMLVGD--DVRRFMQTL-------ADNEGIGGDW--TCAESGGEVQEQKLKMKLLALSAWgene11861 WMLVGD--VPWQMFTDSCRRMRIMKSSEAIGLDM--HRER--------------------gene27891 WMLVGD--VPWRMFHTSVKRLRIMRTSEANGLAP--RFQERGERL---------------gene31097 WLLAHDQDVPWRY*----------------------------------------------gene30941 WMLVGD--VPWK*-----------------------------------------------gene32593 WMLVGD--VPWEMFMSSCKKLRIMKGSEARGLGC--GV*---------------------gene32595 WMLVGD--VPWEMFVDSCKRLRIMKGSEAIGLAP--KAME--------------------gene08191 WMLVGD--VPWSMFSSSCKRLRIMKGSEARGLAC--L*----------------------gene08194 WMLVGD--VPWEMFVESCKRLRIMKGKEAVGLAP--RAME--------------------gene08336 WMLVGD--VPWGMFLSSVKRLRIMRTSEANGLAP--RLQERNARQ---------------gene09007 RMLVGD--VPWK*-----------------------------------------------gene22779 WMLVGD--VPWE*-----------------------------------------------gene26830 WMLVGD--VPWE*-----------------------------------------------gene25723 RMLVGD--VPWQ*-----------------------------------------------gene25817 WMLVGD--VPWGMFTETCRKLRIMKGSEAIGLAP--RAME--------------------gene05990 WMLVGD--VPWEMFLESCKRLRIMKRSDAKGFGILESKGFLKATMKDEPK*---------gene05993 WMLVGD--VPWNMFVESCKRLRLMKSSEAIGLAP--RTPP--------------------gene16979 LLLAGD--LNWKDFVRVAKRIRILPAKANSRRGGGRRST*--------------------gene03675 WRTVGD--VPWREFVECVKRLRIARKN*-------------------------------- *

AT1G04100-AtIAA10 ------------------------------------------------------------

Page 45: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------KCKSRA*-----------------------------------------AT1G04550-AtIAA12 ------------RNNPV*------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ----------------RR*-----------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------KSKNKERV*---------------------------------------AT2G33310-AtIAA13 ------------RKQPV*------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------KCKNRS*-----------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ----------------MH*-----------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------KYCKNRS*----------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------KFKNRS*-----------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 IR---QITDQREDKNIVRSFFFFSPLYSFFFGSAI-------FLLVSYMFSL*-------AT4G29080-AtIAA27 ------------KCRSRN*-----------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------KSKMRA*-----------------------------------------gene05555 ------------KSKIRN*-----------------------------------------gene16569 ------------------------------------------------------------gene16571 LIYFLARTQSNEKFADRLYTKLEHEVWMCL*-----------------------------gene11861 ------------KWKKENNWPE--PHWTPVTGRRTPVNGRQTLVDGHWTPVIRISRPSDSgene27891 ------------RNKPI*------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 ------------KCKNRS*-----------------------------------------gene08191 ------------------------------------------------------------gene08194 ------------KCKNRS*-----------------------------------------gene08336 ------------RCTS*-------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------gene25723 ------------------------------------------------------------gene25817 ------------KCRNRN*-----------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------KCTSSS*-----------------------------------------gene16979 ------------------------------------------------------------gene03675 ------------------------------------------------------------

AT1G04100-AtIAA10 ------------------------------------------------------------AT1G04240-AtIAA3 ------------------------------------------------------------AT1G04250-AtIAA17 ------------------------------------------------------------AT1G04550-AtIAA12 ------------------------------------------------------------AT1G15050-AtIAA34 ------------------------------------------------------------AT1G15580-AtIAA5 ------------------------------------------------------------AT1G51950-AtIAA18 ------------------------------------------------------------AT1G52830-AtIAA6 ------------------------------------------------------------AT1G80390-AtIAA15 ------------------------------------------------------------AT2G01200-AtIAA32 ------------------------------------------------------------AT2G22670-AtIAA8 ------------------------------------------------------------AT2G33310-AtIAA13 ------------------------------------------------------------AT2G46990-AtIAA20 ------------------------------------------------------------AT3G04730-AtIAA16 ------------------------------------------------------------AT3G15540-AtIAA19 ------------------------------------------------------------AT3G16500-AtIAA26 ------------------------------------------------------------AT3G17600-AtIAA31 ------------------------------------------------------------AT3G23030-AtIAA2 ------------------------------------------------------------AT3G23050-AtIAA7 ------------------------------------------------------------AT3G62100-AtIAA30 ------------------------------------------------------------AT4G14550-AtIAA14 ------------------------------------------------------------AT4G14560-AtIAA1 ------------------------------------------------------------AT4G28640-AtIAA11 ------------------------------------------------------------AT4G29080-AtIAA27 ------------------------------------------------------------AT4G32280-AtIAA29 ------------------------------------------------------------AT5G25890-AtIAA28 ------------------------------------------------------------AT5G43700-AtIAA4 ------------------------------------------------------------AT5G65670-AtIAA9 ------------------------------------------------------------gene05555 ------------------------------------------------------------gene16569 ------------------------------------------------------------gene16571 ------------------------------------------------------------gene11861 GHRNFPSHLEALRVQSSRVVTSRHRQNLTATTEPRRAQRVPATPFPDSQRASPAETKAEGgene27891 ------------------------------------------------------------gene31097 ------------------------------------------------------------gene30941 ------------------------------------------------------------gene32593 ------------------------------------------------------------gene32595 ------------------------------------------------------------gene08191 ------------------------------------------------------------gene08194 ------------------------------------------------------------gene08336 ------------------------------------------------------------gene09007 ------------------------------------------------------------gene22779 ------------------------------------------------------------gene26830 ------------------------------------------------------------

Page 46: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene25723 ------------------------------------------------------------gene25817 ------------------------------------------------------------gene05990 ------------------------------------------------------------gene05993 ------------------------------------------------------------gene16979 ------------------------------------------------------------gene03675 ------------------------------------------------------------

AT1G04100-AtIAA10 -----------------------------------------------AT1G04240-AtIAA3 -----------------------------------------------AT1G04250-AtIAA17 -----------------------------------------------AT1G04550-AtIAA12 -----------------------------------------------AT1G15050-AtIAA34 -----------------------------------------------AT1G15580-AtIAA5 -----------------------------------------------AT1G51950-AtIAA18 -----------------------------------------------AT1G52830-AtIAA6 -----------------------------------------------AT1G80390-AtIAA15 -----------------------------------------------AT2G01200-AtIAA32 -----------------------------------------------AT2G22670-AtIAA8 -----------------------------------------------AT2G33310-AtIAA13 -----------------------------------------------AT2G46990-AtIAA20 -----------------------------------------------AT3G04730-AtIAA16 -----------------------------------------------AT3G15540-AtIAA19 -----------------------------------------------AT3G16500-AtIAA26 -----------------------------------------------AT3G17600-AtIAA31 -----------------------------------------------AT3G23030-AtIAA2 -----------------------------------------------AT3G23050-AtIAA7 -----------------------------------------------AT3G62100-AtIAA30 -----------------------------------------------AT4G14550-AtIAA14 -----------------------------------------------AT4G14560-AtIAA1 -----------------------------------------------AT4G28640-AtIAA11 -----------------------------------------------AT4G29080-AtIAA27 -----------------------------------------------AT4G32280-AtIAA29 -----------------------------------------------AT5G25890-AtIAA28 -----------------------------------------------AT5G43700-AtIAA4 -----------------------------------------------AT5G65670-AtIAA9 -----------------------------------------------gene05555 -----------------------------------------------gene16569 -----------------------------------------------gene16571 -----------------------------------------------gene11861 AIDDRRRTAAAMRLRICVVARERGPAHEDDDVSWLGSATREETASA*gene27891 -----------------------------------------------gene31097 -----------------------------------------------gene30941 -----------------------------------------------gene32593 -----------------------------------------------gene32595 -----------------------------------------------gene08191 -----------------------------------------------gene08194 -----------------------------------------------gene08336 -----------------------------------------------gene09007 -----------------------------------------------gene22779 -----------------------------------------------gene26830 -----------------------------------------------gene25723 -----------------------------------------------gene25817 -----------------------------------------------gene05990 -----------------------------------------------gene05993 -----------------------------------------------gene16979 -----------------------------------------------gene03675 -----------------------------------------------

Page 47: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

GA20ox genes

AT4G25420-GA20ox1(GA5) -------------------------------------------------------MAVSFAT5G51810-GA20ox2 -------------------------------------------------------MAILCAT5G07200-GA20ox3 -------------------------------------------------------MATECAT1G60980-GA20ox4 ---------------------------------------------------------MECAT1G44090-GA20ox5 ----------------------------------MCI---------------YASRQTVCgene13360 MANIAMPPDTSITIHSCSLVVPTYLVQNKSAFEILCFLLPPPPPPLSLSLSFVNAMAVECgene19438 ------------------------------------MPMPPSNHPSSL------------gene19437 ------------------------------------------------------------gene09034 ------------------------------------------------------------gene10825 ------------------------------------------------------------

AT4G25420-GA20ox1(GA5) VTTSPE-EEDKPKLGLG-NIQTPLIFNPSMLNLQ-ANIPNQFIWPDDEKPSINVLEL---AT5G51810-GA20ox2 TTTSPAEKEHEPKQDLEKDQTSPLIFNPSLLNLQ-SQIPNQFIWPDEEKPSIDIPEL---AT5G07200-GA20ox3 IATVPQIFSEN-----KTKE-DSSIFDAKLLNQHSHHIPQQFVWPDHEKPSTDVQPL---AT1G60980-GA20ox4 IIKLPQRFNKN-----KSKKNPLRIFDSTVLNHQPDHIPQEFVWPDHEKPSKNVPIL---AT1G44090-GA20ox5 PYLTPFKV-KRP----KSREMNSSDVNFSLLQSQ-PNVPAEFFWPEKDVA-PSEGDL---gene13360 MKTLS---------HHKEDDQKPLVFDASLLRYE-TDIPKQFIWPDDEKPCPNTREL---gene19438 ---NQ---------TKHENERTSLVFDAPVLQYE-SNIPPQFIWPDNEKPCPDRLEL---gene19437 ----------------MPEQTTPVVFDTEVIQYQ-SNIPSPFIWPDDEKPGSDLPDL---gene09034 --MLPILLSSSSKLHARQTKRGPCPIDSSFLQRQ-THVPSGFIWPEADLVA-AHEEL---gene10825 -------------MSLQIEE----QYVESLSSMGHKLSVKNFIWSKEEWPSINHDEFTDA . *.* . : :

AT4G25420-GA20ox1(GA5) -DVPLIDLQNLLSD-P-SSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFAT5G51810-GA20ox2 -NVPFIDLS----S-Q-DSTLEAPRVIAEACTKHGFFLVVNHGVSESLIADAHRLMESFFAT5G07200-GA20ox3 -QVPLIDLAGFLSGDS-CLASEATRLVSKAATKHGFFLITNHGVDESLLSRAYLHMDSFFAT1G60980-GA20ox4 -QVPVIDLAGFLSNDP-LLVSEAERLVSEAAKKHGFFLVTNHGVDERLLSTAHKLMDTFFAT1G44090-GA20ox5 -DLPIIDLSGFLNGNE-AETQLAAKAVKKACMAHGTFLVVNHGFKSGLAEKALEISSLFFgene13360 -QVPLIDLGDFLSGNP-EAAMKASRLVGEACEKHGFFLVVNHGVKESLIADAHQYMDEFFgene19438 -LVPPIDLKGFLTGDA-SVVSEAIRTVDEACKKHGFFLIVNHGVDFQLIEKAHEYMDAFFgene19437 -QAPAIDLNGFLSGDP-SIVAESIRAVDEACKKHGFFLIVNHGVDPELAAKAHDYFDVFFgene09034 -NEHLIDLKGFFKGDD-VATENAAKLIRASCLNHGFFQVTNHGIDSSLIQLVEDHFDKFFgene10825 HDIPVISLQEISDVRRNPNYEKVCEDMVSACHKWGFFKLVDHGVALEIVKRFKGSMNDLF *.* . : :. * * :.:**. : . :*

AT4G25420-GA20ox1(GA5) DMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMS---RSKSVQDYFCAT5G51810-GA20ox2 DMPLAGKQKAQRKPGESCGYASSFTGRFSTKLPWKETLSFQFSNDNS---GSRTVQDYFSAT5G07200-GA20ox3 KAPACEKQKAQRKWGESSGYASSFVGRFSSKLPWKETLSFKFSPEEKI--HSQTVKDFVSAT1G60980-GA20ox4 KSPNYEKLKAQRKVGETTGYASSFVGRFKENLPWKETLSFSFSPTEKSENYSQTVKNYISAT1G44090-GA20ox5 GLSKDEKLRAYRIPGNISGYTAGHSQRFSSNLPWNETLTLAFKKGP-----PHVVEDFLTgene13360 GLPLSEKQRAQRKAGEHCGYASSFTGRFSSKLPWKETLSFSYTADQS---SSNVVKDYLCgene19438 SMKLAEKQRAQRKVGDSCGYASSFTGRFSSKLPWKETLSFRSCADSQ---CSTIVKDYFVgene19437 GRKLSEKQRAQRKVGDSWGYTSSFTGRFNSKLPWKETLSVRYSSESQ---CSTIVDDYFVgene09034 HLPISEKLRVKRVPGSPWGYSGSHADRFSTKLPWKETLSFGFHENGP----EKVVVDFFKgene10825 DLPMEQKLKGARSTSLPLGYCATN-PDYGKNLPWAEILQLLQS--------PQMVVAFAT * : * . ** . : :*** * * . * :

AT4G25420-GA20ox1(GA5) DALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVK-RDYFREFFEENDSIMRLNYYAT5G51810-GA20ox2 DTLGQEFEQFGKVYQDYCEAMSSLSLKIMELLGLSLGVN-RDYFRGFFEENDSIMRLNHYAT5G07200-GA20ox3 KKMGDGYEDFGKVYQEYAEAMNTLSLKIMELLGMSLGVE-RRYFKEFFEDSDSIFRLNYYAT1G60980-GA20ox4 KTMGDGYKDFGSVYQEYAETMSNLSLKIMELLGMSLGIK-REHFREFFEDNESIFRLNYYAT1G44090-GA20ox5 SRLGNHRQEIGQVFQEFCDAMNGLVMDLMELLGISMGLKDRTYYRRFFEDGSGIFRCNYYgene13360 NAMGEEFDEFGRVYQDYSEAMSTLSIGIMELLGMSLGVG-RTHFKEFFGDNDSIMRLNYYgene19438 NVMGEDFAEFGKVYQEYVEAMNNLTNGIMELLGLSLGVG-REYFKEFFEGNDSIMRLNYYgene19437 NVLGEDFREMGKLYQEYSEVVNKVGNVVLELLGLSLGVG-REYFKEYYKGNEAILRWNYYgene09034 SKLGNGFEDTGKVYQKYCEAMTSLALSIMELLAISLGVK-RSQYREFFKDAHSIMRCNYYgene10825 KVFGDQHQPFSDAMIDYLNALDNLGMTILEMLAHGLGLPDNFFTKNFEAKEATMIRVNRY . :*. . .: :.: : ::*:*. .:*: . : : ::* * *

AT4G25420-GA20ox1(GA5) PPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFV-ENQWRSIRPNPKAFVVNIGDTFMAT5G51810-GA20ox2 PPCQTPDLTLGTGPHCDPSSLTILHQDHVNGLQVFV-DNQWQSIRPNPKAFVVNIGDTFMAT5G07200-GA20ox3 PQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFV-DNKWQSIPPNPHAFVVNIGDTFMAT1G60980-GA20ox4 PKCKQPDLVLGTGPHCDPTSLTILQQDQVSGLQVFV-DNQWQSIPPIPQALVVNIGDTLMAT1G44090-GA20ox5 PPCKQPEKALGVGPHNDPTAITVLLQDDVVGLEVFA-AGSWQTVRPRPGALVVNVGDTFMgene13360 PPCQKPDQTLGTGPHCDPTSLTILHQDQVGGLEVFV-DEEWRSISPNLNAFVVNIGDTFM

Page 48: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene19438 PICQKPDLTLGTGPHCDPTSLTILHQDQVGGLEVFV-DEKWHAITPILDSFVINVGDTFMgene19437 PICQKPDLTLGTGPHRDPTSVTILHQDQVGGLEVFV-DEKWHTVTPVPGSFVINIGDTFMgene09034 PTCQEPKLSLGTGPHCDPTSLTILHQDQVRGLEVFV-DNKWQCVKPIRGALVINIGDTFTgene10825 PPCPLPEKCLGLGSHSDPHTLTILLQDDVGGLQVHMNDNKWIGIRPVPNSFIINIGDTLE * * *. ** * * ** ::*:* **.* **:*. .* : * ::::*:***:

AT4G25420-GA20ox1(GA5) ALSNDRYKSCLHRAVVNSESERKSLAFFLCPKKDRVVTPPRELLDS--ITSRRYPDFTWSAT5G51810-GA20ox2 ALSNGIFKSCLHRAVVNRESARKSMAFFLCPKKDKVVKPPSDILEK--MKTRKYPDFTWSAT5G07200-GA20ox3 ALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELVNGVKSGERKYPDFTWSAT1G60980-GA20ox4 ALTNGIYKSCLHRAVVNGETTRKTLAFFLCPKVDKVVKPPSEL-----EGERAYPDFTWSAT1G44090-GA20ox5 ALSNGNYRSCYHRAVVNKEKVRRSLVFFSCPREDKIIVPPPELVEG-EEASRKYPDFTWAgene13360 ALSNGRYKSCLHRAVVNSKTPRKSLAFFLCPKDDKVVKPPRELIDS--SYPRIYPDFTWPgene19438 ALSNGIYKSCLHRAVVNNKTVRKSLAFFLCPNKDKVVTPPTSLVDT--ETPRLYPDFTWPgene19437 ALCNGIYKSCKHRAVVNNKTARKSLAFFIVPHKDRVVSAPASLISA--DSPRLYPDFTWPgene09034 ALSNGLYKSCLHRASVNAVTERRSLAFFLCPKDDNVVKPPEELVTE--VGTRKYPDFTWSgene10825 AWTNGRLKSVVHRAVVNKEKNRLSAAYFMSPSDSATIESPPELMNP-IINPRKYESFTWG * * :* *** ** * : .:* * . : * .: * * .***

AT4G25420-GA20ox1(GA5) MFLEFTQKHYRADMNTLQAFSDWLTKPI*----------------AT5G51810-GA20ox2 MFLEFTQKHYRADVNTLDSFSNWVITNNNPI--------------AT5G07200-GA20ox3 MFLEFTQKHYRADMNTLDEFSIWLKNRRSF*--------------AT1G60980-GA20ox4 MFLEFTMKHYRADMNTLEEFTNWLKNKGSF*--------------AT1G44090-GA20ox5 QLQKFTQSGYRVDNTTLHNFSSWLVSNSDKKST*-----------gene13360 MLLEFTQKHYRADMKTLQAFTNWLQEQRSS*--------------gene19438 SLLEFTQKHYRADIRTLDAFSDWISQNSN*---------------gene19437 TLLEFTQKKRRADLSTIDAFVDWIKQEGGEKNKDQGKGVFVKSF*gene09034 ELLGFTQNHYRCDEFTLHQFFKFIKSESKSVN*------------gene10825 DFKKQLLVQKRVVGKT--ALARYLIPN*----------------- : * * : ::

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

GA3ox genes

AT1G15550-GA3ox1 ------------------------------------------------------------AT1G80340-GA3ox2 ------------------------------------------------------------AT4G21690-GA3ox3 ------------------------------------------------------------AT1G80330-GA3ox4 ------------------------------------------------------------gene06004 ------------------------------------------------------------gene01056 ------------------------------------------------------------gene01058 ------------------------------------------------------------gene01059 ------------------------------------------------------------gene01060 ------------------------------------------------------------gene11192 MELDRISSLPSDVIENILSHLPIRVAARTSVLSSKWRYQFAKLQHLGFGCLCRSNIVDHV

AT1G15550-GA3ox1 ------------------------------------------------------------AT1G80340-GA3ox2 ------------------------------------------------------------AT4G21690-GA3ox3 ------------------------------------------------------------AT1G80330-GA3ox4 ------------------------------------------------------------gene06004 ------------------------------------------------------------gene01056 ------------------------------------------------------------gene01058 ------------------------------------------------------------gene01059 ------------------------------------------------------------gene01060 ------------------------------------------------------------gene11192 LLNHIGPISKFRLVQGRVDTADIDRWVLHLSRHPLKEFILLIWVFQERRYDIPSCIFSCQ

AT1G15550-GA3ox1 ------------------------------------------------------------AT1G80340-GA3ox2 ------------------------------------------------------------AT4G21690-GA3ox3 ------------------------------------------------------------AT1G80330-GA3ox4 ------------------------------------------------------------gene06004 ------------------------------------------------------------gene01056 ------------------------------------------------------------gene01058 ------------------------------------------------------------gene01059 ------------------------------------------------------------gene01060 ------------------------------------------------------------gene11192 DMIHLRLSSCLLKPPSTFKGFRSLKSLAFTNITMAQDVFERLICAPLLERLTLRYCDGFS

AT1G15550-GA3ox1 ------------------------------------------------------------AT1G80340-GA3ox2 ------------------------------------------------------------AT4G21690-GA3ox3 ------------------------------------------------------------AT1G80330-GA3ox4 ------------------------------------------------------------gene06004 ------------------------------------------------------------gene01056 ------------------------------------------------------------gene01058 ------------------------------------------------------------gene01059 ------------------------------------------------------------gene01060 ------------------------------------------------------------gene11192 QLKIDAPNLQFLDVGGSYEDVSIVNMFNVADVSICFSERGTPSSSGSLIKFFDDLPRLQR

AT1G15550-GA3ox1 ------------------------------------------------------------AT1G80340-GA3ox2 ------------------------------------------------------------AT4G21690-GA3ox3 ------------------------------------------------------------AT1G80330-GA3ox4 ------------------------------------------------------------gene06004 ------------------------------------------------------------gene01056 ------------------------------------------------------------gene01058 ------------------------------------------------------------gene01059 ------------------------------------------------------------gene01060 ------------------------------------------------------------gene11192 LQINWNFFKYLLAGGALLDKLPNKPCLHLKYLCLDDLEDISTALCLIRSSPALERLEISA

Page 50: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT1G15550-GA3ox1 -----------------------------------------------------MPAMLTDAT1G80340-GA3ox2 -----------------------------------------------------MSSTLSDAT4G21690-GA3ox3 ------------------------------------------------------MSSVTQAT1G80330-GA3ox4 -----------------------------------------------------MP-----gene06004 -----------------------------------------------------MPVRISEgene01056 -----------------------------------------------------MGALTADgene01058 -----------------------------------------------------MTSTPDEgene01059 ------------------------------------------------------MATPWDgene01060 -----------------------------------------------------MATPP-Dgene11192 IHDYRFLLLSSPMLETMTVDARHYQLDVDIEPLDLAKKLLRLKRASTNLEELGMATPADQ

AT1G15550-GA3ox1 VFRGHPIHLPHSHIPDFTSLRELPDSYKWTPKDD--LLFSAA-PSPPATGENIPLIDLDHAT1G80340-GA3ox2 VFRSHPIHIPLSNPPDFK---SLPDSYTWTPKDD--LLFSAS-A----SDETLPLIDLSDAT4G21690-GA3ox3 LFKNNPVNRDRIIPLDFTNTKTLPDSHVWSKPEP--ET----------TSGPIPVISLSNAT1G80330-GA3ox4 ------SLAEEICIGNLGSLQTLPESFTWKLTAADSLLRPSSAVSFDAVEESIPVIDLSNgene06004 AFPSHPH---KHYPADFNSLHELPDSYAWTNQLD--E-FPSL-DSPFGSDLCVPVIDLNDgene01056 ------FSRNHIVPLDFASVQTVPESHVWSESDD--EY-RCPSGSTADPCLSVPIIDLWDgene01058 ------AYIKRLVPLDFGSAKSVPDSFVWPQASD--EV-HSGD------GLTIPVIDLTDgene01059 ------QAYKHIIPLDFNSVNSVPDSFVWSQS-D--VI-QPDN------GLFIPIIDLMDgene01060 ------QAYKDVIPLDFTSAKTLPDSYVWPESDD--LY-SGTD------QQSIPVIDLMDgene11192 ------AAYKDVIPLDFGSVKTLPDSFVWPESDD--FY-SGTD------QPCIPVINLMD :: :*:*. * :*:*.* .

AT1G15550-GA3ox1 PDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETG-VSGAT1G80340-GA3ox2 IHVATLVGHACTTWGAFQITNHGVPSRLLDDIEFLTGSLFRLPVQRKLKAARSENG-VSGAT4G21690-GA3ox3 PEEHGLLRQACEEWGVFHITDHGVSHSLLHNVDCQMKRLFSLPMHRKILAVRSPDE-STGAT1G80330-GA3ox4 PDVTTLIGDASKTWGAFQIANHGISQKLLDDIESLSKTLFDMPSERKLEAASSDKG-VSGgene06004 QNVIKLIGHACKTWGVFQVTNHGVPQKLVHDIESTCRSLFSLPVQQKLKAARPADG-ISGgene01056 PNATHLIFEACEKWGVFQLTGHGIPAKLIEEVEDKTQRLFSLPVDQKLKVLRSPGA-GTGgene01058 PNAPQLITEACKTWGILQVKGHGIPTKLLEDMESECERLFSLPTDQKMKAVRSPGR-ITGgene01059 SNAPKLIVEACETWGVFQLKNHGVRTKIMEDIESEARKLFDLPIDQKLKAVRSPDG-LSGgene01060 PNATQLIIQACETWGVFQLINHGIPQKLVEDVESQTHRLFALPAEQKLKTLRTPGKVSTGgene11192 PNASQLIIQACETWGVFQLIGHGIPQKLVEDMESQTHRLFALPADQKLKTLRTPGKAIIG . : .*. ** ::: **: ::.::: ** :* .:*: *

AT1G15550-GA3ox1 YGVARIASFFNKQMWSEGFTITGS-PLNDFRKLWPQHHLNYCDIVEEYEEHMKKLASKLMAT1G80340-GA3ox2 YGVARIASFFNKKMWSEGFTVIGS-PLHDFRKLWPSHHLKYCEIIEEYEEHMQKLAAKLMAT4G21690-GA3ox3 YGVVRISMFYDKLMWSEGFSVMGSSLRRHATLLWPDDHAEFCNVMEEYQKAMDDLSHRLIAT1G80330-GA3ox4 YGEPRISPFFEKKMWSEGFTIADDSYRNHFNTLWPHDHTKYCGIIQEYVDEMEKLASRLLgene06004 YGIHRISSFFQKLMWSEGFTLVGS-PLEHFRQLWPQDYNKFCCMVEEYETEMKKLAGRLMgene01056 YGRAMISPFFPKHMWHEGFTIMGS-AADHAKHLWPHDYEEFCVTMDEYQKQMKALIEQLIgene01058 YGIAHIQSLFSTTMWHEGFTIVGS-AIDHARLLWPNDYQGFCDTIDDYQKQMKALAEQLMgene01059 YGIVPIQSLFSTFMWHEGLTLFGS-AIDHAKALWPHDYQQFSDTIDEYQSQMKALAEKVTgene01060 YGNPPSQALLPRKLWQEGFTIMGS-PADQAKVLWPNDHQGFCDIMDDYQKQARGLAEQLIgene11192 YGNPPFQARLSRKLWQEGFTIMGY-PVDQARVLWPHDYQGVCDTMDEYQKQVKALAEQLI ** :* **::: . *** .: . :::* * ::

AT1G15550-GA3ox1 WLALNSLGVSEEDIEWASL--SS--DLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLAT1G80340-GA3ox2 WFALGSLGVEEKDIQWAGP--NS--DFQGTQAVIQLNHYPKCPEPDRAMGLAAHTDSTLMAT4G21690-GA3ox3 SMLMGSLGLTHEDLGWLVPDKTG-SGTDSIQSFLQLNSYPVCPDPHLAMGLAPHTDSSLLAT1G80330-GA3ox4 YCILGSLGVTVEDIEWAHKLEKS--GSKVGRGAIRLNHYPVCPEPERAMGLAAHTDSTILgene06004 WLIFGSLGISKEDVSWAGP--KG--GFEDASNALQLNSYPACPDPSRAMGLAEHTDSTLLgene01056 HIILKSLNISSQKLSWLKSQCSGHCTSTTPGTALQLNSYPPCPNPNRAMGLAQHTDTSLVgene01058 RILFKALSISVEELNWLDDPTNS----SGCSLSLQLNSYPPCPEPSRTLGLAPHTDTSIVgene01059 GILFRALSIPVEDLNWFDDPTNR----SGCNLALQLNSYPPCPEPTRTLGLAPHTDTSIVgene01060 RTIFIFLTI---KVNWFDDPT-M------CQAALQLNSFPPCPDPTRVLGLPPHTDSSLLgene11192 RIVFKFLSISQEEVDWFDDPTNM------CPSAFQLNSYPPCPDPTQALGLPPHTDGSLF : * : .: * ::** :* **:* .:** *** ::.

AT1G15550-GA3ox1 TILYQNNTAGLQVF---RDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQAT1G80340-GA3ox2 TILYQNNTAGLQVF---RDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVNHAT4G21690-GA3ox3 TILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKAT1G80330-GA3ox4 TILHQSNTGGLQVF---REESGWVTVEPAPGVLVVNIGDLFHILSNGKIPSVVHRAKVNHgene06004 TIIHQSNISGLQVL---REGAGWLTVPPVAGALVINIGDLIHILSNGEYQNVLHRAIVNRgene01056 TIL-QAQTSGLQIF---RDDVGWISVQPVRGALTVNIGDFLHILSNGRFVNVLHRVV-VNgene01058 TIL-QAKTSGLQVF---KDGVGWILVELEPDALFVNLGDFSRILSNGQFISVLHRVV-VKgene01059 TIL-QAKTSGLQVF---KDGVGWIPVEPEPEAIIVNLGDFTHLLSNGRFISVLHRVV-VKgene01060 TIL-HSRTEGLQVF---K-GVGWITVQPNPESLIVNVGDLLHILSNGRFVSVFHRAAVVQgene11192 TIL-HSRTEGLQVF---KEGVGWITVQPNPEAFIVNLGDVLHIMSNGRFVSVLHRAAVIQ **: : . **:: . *: . : : :**. ::::** ...**. .

AT1G15550-GA3ox1 TRARLSVAFLWGP-QSDIKISPV-PKLVSPV--ESPLYQSVTWKEYLRTKA--THFNKALAT1G80340-GA3ox2 VRSRFSMAYLWGP-PSDIMISPL-PKLVDPL--QSPLYPSLTWKQYLATKA--THFNQSLAT4G21690-GA3ox3 THHRVSAAYFAGP-PKNLQIGPLTSD-----KNHPPIYRRLIWEEYLAAKA--THFNKALAT1G80330-GA3ox4 TRSRISIAYLWGGPAGDVQIAPI-SKLTGPA--EPSLYRSITWKEYLQIKY--EVFDKAMgene06004 SQQRLSVAYLYGP-PINVQISPH-SKLVTPS--HPSLYRPVTWKEYLGIKG--KLYNKALgene01056 SIQRFSAAYFYGP-PSDFLISPLLSETLCDSEEAVARYRSVTAKEFIGMKA--KHLDRTLgene01058 PIQRYSMAYFFRP-PTDFVASPLLSKDLGP-G-EVPRYRSVTVKEYLDLKG--KHLENALgene01059 PIQRYSMGYFYRP-PKDFVVSPLLSKDLGP-G-EVPRYRSIIAKEYHELKANCKHYEKAFgene01060 KKHRISVAYFYWS-PLDCTVSPLLSKNFADSK-QVPKYRSVTSKEYHVLKA--KHSRDTLgene11192 KDHRISAAYFYWP-PMDFTISPILSKNSADSE-QVPKYRSVTLKEYHVIKT--KHCQDTL * * .:: : .* . * : ::: * ::

AT1G15550-GA3ox1 SMIRNHREE*----AT1G80340-GA3ox2 SIIRN*--------AT4G21690-GA3ox3 TLFRC*--------AT1G80330-GA3ox4 DAIRVVNPTN*---gene06004 SSIKFHDHQNDQM*gene01056 SLLKT*--------gene01058 SFIEN*--------gene01059 SLIEN*--------gene01060 SVVKI*--------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene11192 SVIRI*-------- ..

GA receptor genesgene22353 -----------------------------------------MISDMTQKRELPLLHDSGDgene27756 MACRNRSTCLKSQLFRTRHVFCHVGMLECLTLRHSRGVECPCNIGRKERKKQRV-VVMAGgene20092 -----------------------------------------MRILYNQSKEVPLSKVVPSAT3G05120-GID1a ---------------------------------------------------------MAAAT3G63010-GID1b ---------------------------------------------------------MAGAT5G27320-GID1c ---------------------------------------------------------MAG

gene22353 SESDEEERQEMVVPLNTWVLISNFKLSYTLLRRPDGDFNRHLAEFLDRREPANTIPVEGVgene27756 SNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRSDGTFNRELAEFLDRKVPANTVPVDGVgene20092 NPSNLFSFLQRVVPLNTWVLISNFKLSYNLLRRSDGTFNRELAEFLDRKVPANTIPVDGVAT3G05120-GID1a SDEVNLIESRTVVPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANPVDGVAT3G63010-GID1b GNEVNLNECKRIVPLNTWVLISNFKLAYKVLRRPDGSFNRDLAEFLDRKVPANSFPLDGVAT5G27320-GID1c SEEVNLIESKTVVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVNGV . . :*************::*.:*** ** ***.***:***: **: *::**

gene22353 FSFDVIIDRETSLLTRVYRPASADAPPNLTIFDLMKPVE-DEIVPVIIFFHGGSFAHSSAgene27756 FSFDH-VDRSTGLLNRVYQMAPA-NNAQWGFVNLEKPLSTTEIVPVIIFFHGGSFTHSSAgene20092 FSFDH-VDRSTGLLNRVYQMAPA-NYAQWDIANLEKPLSTTEIVPVIIFFHGGSFTHSSAAT3G05120-GID1a FSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVD-GDIVPVILFFHGGSFAHSSAAT3G63010-GID1b FSFDH-VDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSAAT5G27320-GID1c FSFDVIIDRQTNLLSRVYRPADA--GTSPSITDLQNPVD-GEIVPVIVFFHGGSFAHSSA **** :* **.*:*: * :* :*:. :****::*******:****

gene22353 NSAIYDIMCRRLVKTCNAVVVSVNYRRSPEHRYPCAYDDGWTTVKWVNSRSWLRSTKDSKgene27756 NSAIYDTFCRRLVNTCKAAVVSVDYRRSPEHRYPCAYDDGWSALKWVKSRTWLQSGKDSKgene20092 NSAIYDTFCRRLVKTCKAAAVSVDYRRSPEHRYPCAYEDGCAALKWVKSRTWLQSGKDSKAT3G05120-GID1a NSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSKAT3G63010-GID1b NSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNAT5G27320-GID1c NSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSK ****** :***** * ..***:***:**. *****:** .::**:* **:* ***:

gene22353 VHIYLAGDSSGGNIVHNVALRAADSEIDVLGNILLNPMFGGQERTATETRLDGKYFVTIQgene27756 VYVYLAGDSSGGNIAHHVAVKAAEAEVEVLGNILLHPMFAGQMRTASEVKLDGKYFVSIQgene20092 VYVYLAGDSSGGNIVHHVAVRAAEAEVEVLGNILVHPMFGGQMRTESEVKLDGKYFVTVQAT3G05120-GID1a VHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRAT3G63010-GID1b VYVYLAGDSSGGNIAHNVAVRATNEGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQAT5G27320-GID1c VRIFLAGDSSGGNIVHNVAVRAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVR * ::**********.*.**::* : :.******:.***.* ** :* *******:::

gene22353 DRDWYWRAFLPEGEDRDHHACNPFGPRGISVKGLKFPRSLVVVAGLDLVQDWQLAYAKGLgene27756 DRDWYWRAFLPEGEDRDHPACNIFGPRGKGIQGLKFPKSLVVVAGLDLMQDWQLAYVEGLgene20092 DRDWYWRAFLPEGEDRDHPACNTFGPRDKGIQGLKFPKSLVVVAGLDLMQDWQLAYVEGLAT3G05120-GID1a DRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLAT3G63010-GID1b DRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLAT5G27320-GID1c DRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGL ******:*:*******:* **. *.** .::*:.**:**********::**** *..**

gene22353 EDAGQDVKLLYLEQATIGFYLLPNTVHYHTVMNEMSSFVRSDC*-------------gene27756 RNSGQDVKLLFLEEATIGFYFLPNNKHFYCLMEEMSNFVKPDC*-------------gene20092 RISGQEVKLVFLKEATIGFYFLPNNKHFCRLMEEISNFVKPDCC*------------AT3G05120-GID1a KKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNAEC*-------------AT3G63010-GID1b KKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELNKFVHSIEDSQSKSSPVLLTP*AT5G27320-GID1c KKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIAAFVNAECQ*------------ . :* :*:*:.*::**:***:***. *: :*:*: **.

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

DELLA genes

AT1G14920-GAI ---------------------------MK----------RDHHHHHHQDKKTMM---M--AT1G66350-RGL1 -MKREHNHRESS------------AGEGG----------------------SSS---M--AT2G01570-RGA -MKRDHHQFQGR------------LSNHG----------TSSSSSSISKDKMMM---V--AT3G03450-RGL2 -MKRGYGETWDP------------P-PKP----------LP--ASRSGEGPSMADKKK--AT5G17490-RGL3 -MKRSHQ---------------------------------E--TSVEEEAPSMVEKLE--gene06210 -MKREHHSHPHH------------PNPNP----------SVASTSNDKAGKAAM------gene30958 ---------MEP------------YNSGG----------GVSSSSSASSSSS-----S--gene01356 MMMNSHCGSMGSIKSENSCTDFKPTSPNESTIMSEAPKKATSTTTTALSSSDMMEQSTTSgene22702 ------------------------------------------------------------gene06947 ------------------------------------------------------------

AT1G14920-GAI ------------------------------------------------------------AT1G66350-RGL1 ------------------------------------------------------------AT2G01570-RGA ------------------------------------------------------------AT3G03450-RGL2 ------------------------------------------------------------AT5G17490-RGL3 ------------------------------------------------------------gene06210 ------------------------------------------------------------gene30958 ------------------------------------------------------------gene01356 LTPPSLNFPALKFELDGDVEVESPDHSMWESFFSEQFDTDFMVLSPVANMNNNLPNSPRSgene22702 ------------------------------------------------------------gene06947 ------------------------------------------------------------

AT1G14920-GAI ------------------------------NEED--DGNGMDELLAVLGYKVRSSEMADVAT1G66350-RGL1 ------------------------------TTVIKEEAAGVDELLVVLGYKVRSSDMADVAT2G01570-RGA ------------------------------KKEEDGGGNMDDELLAVLGYKVRSSEMAEVAT3G03450-RGL2 ------------------------------ADDDNNNSNMDDELLAVLGYKVRSSEMAEVAT5G17490-RGL3 ------------------------------NGCGGGGDDNMDEFLAVLGYKVRSSDMADVgene06210 -------------------------------WEESQHDDGMDELLAVLGYKVKSSSMADVgene30958 ------------------------------SATSITQPQEMDGYLAEAGYNVRSSDLRHVgene01356 FCYNNGQVMQGQSSFSSCSPPRFGSSPVGAFSRDNSKGKGLSPLRRVF-----NSPVNYIgene22702 ------------------------------------------------------------gene06947 ------------------------------------------------------------

AT1G14920-GAI AQKLEQLEVMMSNVQEDDLSQLATETVHYNPAELYTWLDSMLTDLNPPSS----------AT1G66350-RGL1 AHKLEQLEMVL----GDGISNLSDETVHYNPSDLSGWVESMLSDLDPTRIQ---------AT2G01570-RGA ALKLEQLETMMSNVQEDGLSHLATDTVHYNPSELYSWLDNMLSELNPPPLPASSNGLDPVAT3G03450-RGL2 AQKLEQLEMVLSNDD-VG-STVLNDSVHYNPSDLSNWVESMLSELNNPASSDLD------AT5G17490-RGL3 AQKLEQLEMVLSNDI-ASSSNAFNDTVHYNPSDLSGWAQSMLSDLNYYP--DLD------gene06210 AQKIEQLEEFMGTVQQDGLSHLASDTVHYNPSDLSNWLESMISEITPPSNFEPVMAPPPPgene30958 AQRLERLENVMVNSH-DDLAQFASDAVIYNPSDMASWVDSLLSASDFNAP-D--------gene01356 QQEPENLQSLPPASIEDFLDDY--------Q------RDGFVAAYGNPNLNNQTTTCTSKgene22702 ---------MAPGHGRRFMTEH--------ECTDHEIRSNRMSDLELHGLNHSSMACYSSgene06947 ---------MESG----FYV-Q--------PCEV--YGDNKCDEVVGLDLNLSSMSCLPF . .

AT1G14920-GAI -------------------------------------------------NAEYDLKAIPGAT1G66350-RGL1 ----------------------------------------------EKPDSEYDLRAIPGAT2G01570-RGA LPS-------------------------------------P--EICGFPASDYDLKVIPGAT3G03450-RGL2 -----------------------------------------TTRSC-VDRSEYDLRAIPGAT5G17490-RGL3 -----------------------------------------PNRIC-DLRPIT-------

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Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

gene06210 LGSSVMMNDSFLAPAESSTITSIDFADQSMNTKSKSVSPRTQFEDC-SSSSNYELKAIPGgene30958 ----------------------LDFADAIMTDP----------------T----------gene01356 ----------------MS-------A-GVNNPSSQSYHNPMTSMDCN-------------gene22702 ----------------YPYMASLDQE-GSANDSSSLINPYSVHE----------------gene06947 ----------------SS-LSTL-------ENSSAVWEIPFIDE----------------

AT1G14920-GAI DAILNQFAIDSASSSNQGGGGDTY-------TTN------------KRLK-----CS-NGAT1G66350-RGL1 SAVYPRDEHVTRRSK---------------------------------------------AT2G01570-RGA NAIYQFPAIDSSSSSNNQNKRLKSCSSPDSMVTST-------S-TGTQIGGVIGTTV-TTAT3G03450-RGL2 LSAFPKEEEVFDEEASSKRIRL---------------------------G----------AT5G17490-RGL3 ----DDDECCSSNSNSNKRIRL---------------------------G----------gene06210 KAIFSQQTQFDSSPR--EPKRL--KPSPDFYSTTS-------S-----------SSL-QPgene30958 -AAFPADTWSDIPP------PI---------STA--------------------------gene01356 -----------MSSTMQTPSRFSRSVSETSLVTECNSQMSQESRGGGAYHHQMGSNCGAPgene22702 ---------------SRDRKRLKRTISID------DSLSSITSINGGMM--SRSSSTNSLgene06947 ---------------TRNLKRVKLENSAD------ESIV---STNYSLYSGSGSMYTGGF

AT1G14920-GAI VV-----------------------------ETTTATAESTRHVVLVDSQENGVRLVHALAT1G66350-RGL1 -R-----------------------------TRIESELSSTRSVVVLDSQETGVRLVHALAT2G01570-RGA TT-----------------------------TTTTAAGESTRSVILVDSQENGVRLVHALAT3G03450-RGL2 -S-----------------------------WCESSDE-STRSVVLVDSQETGVRLVHALAT5G17490-RGL3 -P-----------------------------WCDSVTSESTRSVVL--IEETGVRLVQALgene06210 VS-----------------------------LPLPTAAESTRPVVVVDSQENGVRLVHGLgene30958 -------------------------------APPPMQNHQQITSFTAMEEDSGIRLVQLLgene01356 LSQQLMHERQQEKQHMQMHPQKQ----HHNNHNYNMMPPSLPPVAPEPEQDSGLQLVHLLgene22702 TTLP----RLHFRDHIWTYTQRYLAAEAVEEAAAAMINAEENGAEQEDGTADGMRLVQLLgene06947 NSLS----RIQIRDHISAYTRRYMAAEAMEEAASTFLG----GEPEEEGSGDGMKLVQKL *::**: *

AT1G14920-GAI LACAEAVQKENLTVAEALVKQIGFLA--VSQIGAMRKVATYFAEALARRIYRLSP----SAT1G66350-RGL1 LACAEAVQQNNLKLADALVKHVGLLA--SSQAGAMRKVATYFAEGLARRIYRIYP----RAT2G01570-RGA MACAEAIQQNNLTLAEALVKQIGCLA--VSQAGAMRKVATYFAEALARRIYRLSP----PAT3G03450-RGL2 VACAEAIHQENLNLADALVKRVGTLA--GSQAGAMGKVATYFAQALARRIYRDYTAETDVAT5G17490-RGL3 VACAEAVQLENLSLADALVKRVGLLA--ASQAGAMGKVATYFAEALARRIYRIHP----Sgene06210 MACAEAVQQNNLNLAKALVTQISYLA--ISQAGAMRKVATFFAEALAQRIFRVYP-----gene30958 VTCAESVQRGDLALAGSIIETMQALLTRVNTGCGIGKVAGYFIDALSRRVFTPQSVTSDGgene01356 LACAEAVAKEDYMLARRYLHHLNQVV--SALGDSMQRVAACFTEALSARLAATLTTNSSAgene22702 IACAEAVACRDKSHASALLSELRANA--LVFGSSFQRVASCFVQGLASRLALVQPLGAVGgene06947 ISCAEAVACRDKTHASALLYELRTNA--QVFGTSFQRVASCFIQALSDRLALVQPLGAVG ::***:: : * : : .: :** * :.*: *:

AT1G14920-GAI QSP--------IDHSLSDTLQMHFYETCPYLKFAHFTANQAILEAFQGKKRVHVIDFS--AT1G66350-RGL1 DDV--------ALSSFSDTLQIHFYESCPYLKFAHFTANQAILEVFATAEKVHVIDLG--AT2G01570-RGA QNQ--------IDHCLSDTLQMHFYETCPYLKFAHFTANQAILEAFEGKKRVHVIDFS--AT3G03450-RGL2 CAA--------VNPSFEEVLEMHFYESCPYLKFAHFTANQAILEAVTTARRVHVIDLG--AT5G17490-RGL3 AAA--------IDPSFEEILQMNFYDSCPYLKFAHFTANQAILEAVTTSRVVHVIDLG--gene06210 AAP--------IDHSYSEMLQMHFYETCPYLKFAHFTANQAILEGFQGKKRVHVIDFS--gene30958 GS-----------AHENELLYHYFYEACPYLKFAHFTANQAILEAFHGHDCVHVIDFN--gene01356 LAPKPFSPFPP-NSLEILKIYQIVYQACPYIKFAHFTANQAIFEAFESEERVHVIDLD--gene22702 FVPSKLNAKDYALMDKKEEALRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTgene06947 VTTKII-----GVSSEKDEALHLVYDICPHIRFSHFVANTSILEAFEGESSVHVIDLGMT .*: **:::*.**.** :*:* . ***:*:

AT1G14920-GAI --MSQGLQWPALMQALALRPGGPP--VFRLTGIGPPAPDNFDYLHEVGCKLAHLAEAIHVAT1G66350-RGL1 --LNHGLQWPALIQALALRPNGPP--DFRLTGIGYSLT----DIQEVGWKLGQLASTIGVAT2G01570-RGA --MNQGLQWPALMQALALREGGPP--TFRLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVAT3G03450-RGL2 --LNQGMQWPALMQALALRPGGPP--SFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVAT5G17490-RGL3 --LNQGMQWPALMQALALRPGGPP--SFRLTGVGNPS--NREGIQELGWKLAQLAQAIGVgene06210 --MNQGMQWPALMQALALRPGGPP--VFRLTGIGPPAADNSDHLQEVGWKLAQLAETIHVgene30958 --LMHGLQWPALIQALALRPGGPP--LLRLTGIGPPSPDGRDSLREIGLRLAELARSVNVgene01356 --ILQGYQWPAFMQALAARSGGAP--FLRITGVGPCI----EAVKETGRCLMELAISLHVgene22702 LGLPHGDQWRGLIHSLTTRAGQPPVSRLRITGVGLCA----DRLQIIGEELEAYADSLGLgene06947 LGLLHGYQWRNLIDRLASRTGRLP--RLRITGVGNSC----ERLEAIGNELKLYAQNVEL : :* ** ::. *: * * :*:**:* :. * * * : :

AT1G14920-GAI EFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRP-GAIDKVLGVVNQIKAT1G66350-RGL1 NFEFKSIALNNLSDLKPEMLDIRPG-LESVAVNSVFELHRLLAHP-GSIDKFLSTIKSIRAT2G01570-RGA EFEYRGFVANSLADLDASMLELRPSDTEAVAVNSVFELHKLLGRP-GGIEKVLGVVKQIKAT3G03450-RGL2 EFEFKGLAAESLSDLEPEMFETRPE-SETLVVNSVFELHRLLARS-GSIEKLLNTVKAIKAT5G17490-RGL3 EFKFNGLTTERLSDLEPDMFETRTE-SETLVVNSVFELHPVLSQP-GSIEKLLATVKAVKgene06210 EFEYRGFVANSLADLDASMLELRPSEVESVAVNSVFELHKLLARP-GAIEKVLSVVKQMKgene30958 RFAFRGVAASRLEDVKPWMLQVSPK--EAVAVNSIMQLHRLLGSDSTRIEMMLGWIRNLNgene01356 PFEFHAV-GEQLEDLKPHMFNRRIG--EALAVNTVNRLHRVPGN---CLGNLLAMIRDQAgene22702 SVEFTCV-ESNLENLKPEDIKLYEG--EVLVVNSILQLHCVVKESRGALNSVLQMIHELSgene06947 EFEFLAL-ESNLENLKAEDFSLIDG--EVLVINSILQLHCLVKESRGALNSVLQTLYELS . : . . * ::. :. * :.:*:: .** : : .* :

AT1G14920-GAI PEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGV--PSGQD-KVMSEVYLGKQICAT1G66350-RGL1 PDIMTVVEQEANHNGTVFLDRFTESLHYYSSLFDSLEGP--P-SQD-RVMSELFLGRQILAT2G01570-RGA PVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGV--PNSQD-KVMSEVYLGKQICAT3G03450-RGL2 PSIVTVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSYSLPSQD-RVMSEVYLGRQILAT5G17490-RGL3 PGLVTVVEQEANHNGDVFLDRFNEALHYYSSLFDSLEDGVVIPSQD-RVMSEVYLGRQILgene06210 PEIVTVVEQEANHNGPVFLNRFNESLHYYSTLFDSLEGS--VNSQD-KMMSEVYLGKQIFgene30958 PKIVTVVEQEADHNKPGFLERFTEALYYYSNMFDSLEACGA-MQPD-KTLAEMYIQREICgene01356 PNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAKVEQYIFAPEIRgene22702 PKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKgene06947 PKLMVLVEQDSSHNGPFFLGRFMEALHNYSAIFDSLDAMLPKYDTRRAKVEQFYFGEEIK * :..:***::.** ** ** *:*: ** :****: : : : :*

AT1G14920-GAI NVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFNGGEGYRVEESAT1G66350-RGL1 NLVACEGEDRVERHETLNQWRNRFGLGGFKPVSIGSNAYKQASMLLALYAGADGYNVEEN

Page 54: · Web viewAT5G57090-AtPIN2 VS-TDPKVSIPPHD-NLATKAMQNLIENMSP-GRKGHVEMDQDG-NNGG-----K----gene04070 FGGPDFAASEQSGRSDQGAKEIRMLVADHPQNGETKVAVTDNDG-EHHHHQAVAEAFKFA

Supplemental Data set 10. Kang et al. Plant Cell. (2013). 10.1105/tpc.113.111732Sequence alignment file used to generate phylogenetic trees shown in Supplemental Fig. 3, 4 online.

AT2G01570-RGA NLVACEGPDRVERHETLSQWGNRFGSSGLAPAHLGSNAFKQASMLLSVFNSGQGYRVEESAT3G03450-RGL2 NVVAAEGSDRVERHETAAQWRIRMKSAGFDPIHLGSSAFKQASMLLSLYATGDGYRVEENAT5G17490-RGL3 NLVATEGSDRIERHETLAQWRKRMGSAGFDPVNLGSDAFKQASLLLALSGGGDGYRVEENgene06210 NVVACEGVERVERHETLAQWRTRFDKSGFTPVHLGSNAFKQASMLLALFAGGDGYRVEENgene30958 NVVCCEGVARVERHEPLAKWRTRLEQAGFRPLHLGSNAYKQASMLLTLFS-AEGYRVEEKgene01356 NIVAFEGAERTERHERLEKWRKVMEGKGFKSVPLSANAVTQSKILL-GLYSCDGYRMMEDgene22702 NIISCEGPARVERHERVDQWRRRMSRAGFQGAPIKMMA--QAKQWLGKNKVCEGYTVVEEgene06947 NIVSCEGPARVERHERIDQWRRRMRRAGFQPAPLKTIT--QATKWLEKN-ASEGYTIVED *::. :* * **** :* : *: : : *:. * :** : *.

AT1G14920-GAI DGCLMLGWHTRPLIATSAWKLSTN*---------------------AT1G66350-RGL1 EGCLLLGWQTRPLIATSAWRINRVE*--------------------AT2G01570-RGA NGCLMLGWHTRPLITTSAWKLSTAAY*-------------------AT3G03450-RGL2 DGCLMIGWQTRPLITTSAWKLA*-----------------------AT5G17490-RGL3 DGSLMLAWQTKPLIAASAWKLAAELRR*------------------gene06210 DGCLMLGWHTRPLIATSAWKLGAQAVMTH*----------------gene30958 EGCLTIGWHSRPLIAASAWQVMPLPEPTATATNPLGIVNHSANHV*gene01356 KGCLLLGWQDRSIMAASAWRC*------------------------gene22702 KGCLVLGWKSRPIVAASCWKC*------------------------gene06947 KGCFVLGWKSKPIIAASCWRCS*----------------------- .*.: :.*: : ::::*.*: