Using Biological Variables and Social Determinants to ...swim/jpn/presentations/swim2017-21.pdf ·...
Transcript of Using Biological Variables and Social Determinants to ...swim/jpn/presentations/swim2017-21.pdf ·...
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IEICE Software Interprise Modeling (SWIM)
Using Biological Variables and Social Determinants to Predict Malaria and Anemia among Children in Senegal
Date: December 2nd, 2017Venue: Tokyo University of SciencePresented by: M. Boubacar Sow, Miyagi University, Graduate School of Project Design: Information design Program.Email: [email protected]
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Outline❖ Background and problem Statement
❖ Purpose
❖ Malaria and Anemia Definitions
❖ Disease classification
❖ Data Collection
❖ Data Reduction
❖ Model Building
❖ Results
❖ Key Findings
❖ Research contributions
❖ Limitations
❖ Future Work
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Introduction❖ Machine learning techniques in public health care.
❖ Improving child health by disease prediction.
❖ Presenting two classification models for two life-threating diseases.
❖ Predicting Malaria and Anemia using four machine learning techniques.
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Purpose
❖ The Purpose of this paper is to solve health perspective problems and seeking knowledge for better health.
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Hypothesis
❖ H1: Using social and biological variables is an innovative approach in solving public health problems by data analytics.
❖ H2: We can predict Malaria and Anemia by considering data related to mothers as a social determinants of child health
❖ H3: By data analytics we can figure out the relation between Malaria and Anemia
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Malaria and Anemia
❖ Disorders of the red blood cells:
❖ Malaria caused by plasmodium parasites from the bite of Anopheles.
❖ Anemia is caused by iron deficiency.
❖ Severe Malaria can cause Anemia
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What is disease Classification
❖ The use of Machine learning techniques in Medicine.
❖ Binary classification: absence or presence of a disease, normal or abnormal condition.
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Types of variables used in DC
❖ Clinical data
❖ Morphometric parameters
❖ Physiological data
❖ environmental data
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Is it relevant to use SDH and biological variables?
❖ Biological variables of health: Personal biological factors such as Age, Gender, BMI,…
❖ Social Determinants of health: Information related to where people live, what they eat, what they do, what they learn, do they have occupation and those conditions affect their health.
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Getting Started by collecting the Data
❖ Demographic Health survey: Survey made in Senegal 2015 to 2016.
❖ Initial Dataset : 986 variables and 6935 instances.
❖ Composition: Household information, Mother’s record, Immunization record, Child Information, etc.
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Data Reduction
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Data Reduction cont’d
Techniques Number of variables removed
Number of variables remaining
Missing values and irrelevant variables 940 46
Correlation Anemia(11)Malaria(17)
Anemia(35)Malaria(29)
RFE Anemia(10)Malaria(5)
Anemia(25)Malaria(24)
PCA Anemia(5)Malaria(7)
Anemia(20)Malaria(17)
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Final Dataset
❖ Malaria: 62 instances and 17 attributes
❖ Anemia: 2583 instances and 20 attributes
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Binary classification❖ supervised learning considering two class labels.
❖ Separate input data into two classes.
❖ In medical testing is the approach to determine if a person has certain disease or no.
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Binary classification Setting
Anemia
SevereModerate PositiveMild
Not anemic: Negative
Malaria Result of Malaria test: Positive or Negative
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Building a Model for Malaria and Anemia
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Results
❖ For Malaria:
0% 20% 40% 60% 80% 100%
KNN
Random Forest
SVM
Naive Bayes
92.30%
76.92%
84.60%
84.61%
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Results cont’d
❖ For Anemia
0% 20% 40% 60% 80% 100%
KNN
Random Forest
SVM
Naive Bayes
80.85%
84.14%
93.61%
76.64%
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Key Findings
❖ SVM Classifies more consistently for two-dimensional output labels(Positive and Negative).
❖ Non-medical factors predict accurately Anemia and Malaria.
❖ Information related to mother are good predictors for our classification task.
❖ Using some common variables for both classification sustain the relationship between Malaria and Anemia.
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Research Contributions
❖ Promote the use of SVM in disease prediction.
❖ Give more value to Social determinants of health and biological variables for medical diagnostic and healthcare.
❖ Involving variables related to mother in preliminary disease diagnose.
❖ This study is a knowledge discovery to tackle child health problems.
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Research Limitations
❖ Parameters tuning for SVM and Random Forests
❖ This study is limited by the small sample size of Malaria dataset.
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Future work
❖ Classify the severe stage of Malaria known as Malarial anemia.
❖ Design an Ontology model for Social determinants of Health. (Integration and Interoperability)
❖ Classification for multi-class problems.
❖ Use social determinants of heath to predict other diseases.
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THANK YOU
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