Molecular mechanisms of intensive care unit-acquired weakness
Unit 2 9 Mechanisms Notes
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Transcript of Unit 2 9 Mechanisms Notes
Unit 2.9 - Mechanisms in organic chemistry
Chemical reactions can be broken down and studied in great detail.
By very careful experimentation we can tell exactly how a reaction
happens; in other words we can know its mechanism, right down to
the movement of individual electrons
1. Classifying reactions
There are an almost infinite number of different organic compounds
and, therefore, an even greater number of different organic
reactions. It is vital for chemists to be able to put reactions into
categories:
a) Addition
An addition reaction is…
Example of an addition reaction:
b) Elimination
An elimination reaction is…
Example of an elimination reaction:
c) Condensation
A condensation reaction is…
Example of a condensation reaction:
d) Substitution
A substitution reaction is…
Examples of substitution reactions:
e) Oxidation and reduction
Oxidation is…
Oxidation levels in organic chemistry
Alcohol Aldehyde / ketone Carboxylic acid
Examples of oxidation reactions:
f) Polymerisation
Polymerisation is…
Examples of polymerisation reactions:
[O]
2. Classifying reagents
Reagents are, simply put, the chemicals involved in making chemical reactions happen. Just like the
reactions themselves there are literally millions of different organic reagents. It is helpful to be able to
put them into categories:
a) Nucleophiles
Are attracted to partially _______________ atoms (look for polar bonds)
Are electron ‘rich’ with a _____________ charge or _______ pair of electrons
Can donate a pair of electrons to form a new ______________ bond
Nucleophilc substitution:
The hydrolysis of halogenoalkanes is an example of how nucleophiles ‘attack’, as this example with
1-iodopropane shows:
CH3CH2CH2I(l) + KOH(aq) CH3CH2CH2OH(l) + KI(aq)
Mechanism for nucleophilic substitution
b) Electrophiles
Are attracted to electron ‘rich’ atoms or groups
Either have a ____________ charge or are electron deficient (‘poor’)
Can accept a pair of _______________ to form a new _____________ bond
Electrophilic addition
The addition of hydrogen halides (HF, ___, ___ and ___) to alkenes is an example of how
eletrophiles can ‘attack’, as shown in this example with propene:
CH3CHCH2 + HBr CH3CHBrCH3
Mechanism for electrophilic addition
3. Breaking bonds
A single covalent bond contains a _________ of electrons. Bonds
can be made and broken by the movement of electrons. The way in
which the electrons move in a reaction is known as the reaction
_____________. Bonds can break in two different ways:
a) Homolytic fission
In homolytic fission the pair of electrons are shared evenly creating two _____ ___________
X Y X + Y e.g. formation of chlorine radicals:
The unpaired electrons of free radicals make them very ______________
A + B e.g. formation of chloroethane:
b) Heterolytic fission
In heterolytic fission the pair of electrons goes to one side of the bond creating one _________
and one ____________ ion:
X Y X + Y e.g. dissociation of hydrogen chloride:
Remember - Double and single-headed curly arrows show electron movement
Heterolytic or homolytic?
Homo
In this course homolytic fission appears twice: Firstly in free radical substitution reactions of
alkanes (p118) and secondly in the problems with CFCs section (p214).
Both cases have one thing in common - Light
If the question mentions ‘sunlight’ or ‘UV light’ think homolytic fission
Light is the initiator for the reaction, it causes the free radicals to form in the first place
Cl2 + h Cl + Cl Initiation
Cl + CH4 CH3 + HCl Propagation
CH3 + CH3 C2H6 _____________
Hetero
Hetero lytic fission is luckily also quite easy to spot if you know what to look for: Bonds which
are polar (have a highly ______________ atom at one end and a less ________________
atom at the other) or polarised tend to undergo homolytic fission. For example:
4. The ozone layer - Free radical chemistry
The ozone Earth’s ozone
layer can be found between
10-50 km above the surface.
It actually consists of quite
low ozone concentrations.
The ozone is naturally
formed: O2 + h O + O
O2 + O O3
And destroyed in a series of
free radical reactions.
The ozone layer is vital to life on Earth. It protects us
by absorbing harmful ultraviolet radiation from the
Sun:
O3 + h O2 + O
O + O3 O3
And replenishes itself naturally as the oxygen _____
____________ produced when ozone breaks down
are very ___________ and will rapidly react with
another oxygen molecule to form ___________
Without this process UV-B radiation can damage
cells and can lead to ____________
CFCs and destruction of the ozone layer
CFCs are organic compounds containing carbon ______________ and _______________
They were widely used as _______________, ________________ and _______________
until it was discovered that they catalyse the destruction of stratospheric ozone
The use of CFCs was banned in 1987 by the Montreal protocol. Since then ozone levels have
begun to recover
A typical mechanism for destruction of ozone by CFCs is shown below:
1. CCl2F2 + h CClF2 + Cl _______________
2. Cl + O3 ClO + O2 _______________
3. ClO + O3 Cl + 2O2 _______________
NB The chlorine radical is not removed in this process - one molecule of CFC can lead to the
destruction of thousands of molecules of ozone
The mechanism for part 1 involves the ________________ fission of the C-Cl bond and is shown
below:
Changes in Antarctic ozone levels (p228)
Rememberh represents energy from UV radiation
As shown in the graph (above right), stratospheric ozone layers drop dramatically in spring and are at
their lowest in October. The reason for this is…
Polar stratospheric clouds