Chapter 19: Assessing Key Vulnerabilities and the Risk from Climate ...
The use of networks in the study of climate-related vulnerabilities
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Transcript of The use of networks in the study of climate-related vulnerabilities
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The use of networks in the study of climate-related
vulnerabilitiesMarco Pautasso,
Division of Biology, Imperial College London,
Silwood Park
PIK Potsdam, 2 August 2010
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DiseaseBiodiversity x
Review
Researchy Empirical
Theoreticalz
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(a), (b) & (c) from: Pautasso & Gaston (2006) Global Ecology & Biogeography;(d) from: Pautasso & Gaston (2005) Ecology Letters
Research interests - 1. Macroecology
Survey year
Log 10
plot
are
a (k
m2 )
Log 1
0as
sem
blag
e ab
unda
nce
(indi
vidu
als)(c)
Log10 plot area (km2)
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Research interests - 2. Landscape pathology
Picture: D. Rizzo, UC Davis Pautasso et al. (2010) Biological Reviews
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NATURAL
TECHNOLOGICAL SOCIAL
food webs
airport networks
cell metabolism
neural networks
railway networks
ant nests
WWWInternet
electrical power grids
software mapscomputing
gridsE-mail
patterns
innovation flows
telephone calls
co-authorship nets
family networks
committees
sexual partnerships DISEASE
SPREAD
Food web of Little Rock Lake, Wisconsin, US
Internet structure
Network pictures from: Newman (2003) SIAM Review
HIV spread
network
Research interests - 3. Network epidemiology
urban road networks
Modified from: Jeger et al. (2007) New Phytologist
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Current research – 1. epidemic modellingin small-size directed networks
N replicates = 100; error bars are St. Dev.; different letters show sign. different means
at p < 0.05
from: Moslonka-Lefebvre et al. (2009) Journal of Theoretical Biology
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Current research -2. fire blight epidemic development in Switzerland
From: Eidgenössisches Volkswirtschaftsdepartement, Swiss Confederation
2003 2007
199919952003-07
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b from: http://www.worldmapper.org/
a, c & d: from: Pautasso & Parmentier (2007) Botanica Helvetica
(c)
(d)
(a)(c)
log 1
0sp
pri
chne
ss (n
)
(b) Size of countries reflects n of botanic gardens
Current research – 3. biogeography of the living collections of the world’s botanical gardens
(d)
(yr)
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Acknowledgements
Ottmar Holdenrieder,
ETHZ, CH
Mike Jeger, Imperial College,
Silwood
Mike Shaw, Univ. of Reading
Kevin Gaston, Univ. of
Sheffield
Mathieu Moslonka-Lefebvre,
Agro-Paris Tech, France
Joan Webber, Forest Research
Peter Weisberg, Univ. of Nevada,
Reno, USA
Mike McKinney, Univ. of Tennessee, USA
Ingrid Parmentier, Univ. of Brussels,
Belgium
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US counties with (•) or without (o) Universities and/or Botanical Gardens
from: Pautasso & McKinney (2007) Conservation Biology
• N = 692, r2 = 0.13, y = 2.15 (SE = 0.08) + 0.15 (SE = 0.01) x, p < 0.0001
o N = 2187, r2 = 0.10, y = 2.18 (SE = 0.05) + 0.15 (SE = 0.01) x, p < 0.0001
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European trade flows in ornamental plants (2004)
Dehnen-Schmutz et al. (2010) Scientia Horticulturae
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step 1
step 2
step 3
step n
…
Simple model of infection spread (e.g. P. ramorum) in a network
pt probability of infection transmission
pp probability of infection persistence
… 100node 1 2 3 4 5 6 7 8
from: Moslonka-Lefebvre et al. (in review) Phytopathology
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0.00
0.25
0.50
0.75
1.00
0.00 0.25 0.50 0.75 1.00
probability of transmission
prob
abili
ty o
f per
sist
ence
localrandomsmall-worldscale-free (two-way)scale-free (uncorrelated)scale-free (one way)
Lower epidemic threshold for scale-free networks with positive correlation between in- and out-degree
modified from: Pautasso & Jeger (2008) Ecological Complexity
Epidemic does not develop Epidemic develops
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from: Golding et al. (2010) Annals of Botany
Living collections of the world’s botanic gardens (2)
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ReferencesDehnen-Schmutz K, Holdenrieder O, Jeger MJ & Pautasso M (2010) Structural change in the international horticultural industry: some implications for plant health. Scientia Horticulturae 125: 1-15Golding J, Güsewell S, Kreft H, Kuzevanov VY, Lehvävirta S, Parmentier I & Pautasso M (2010) Species-richness patterns of the living collections of the world's botanic gardens: a matter of socio-economics? Annals of Botany 105: 689-696Harwood TD, Xu XM, Pautasso M, Jeger MJ & Shaw M (2009) Epidemiological risk assessment using linked network and grid based modelling: Phytophthora ramorum and P. kernoviae in the UK. Ecological Modelling 220: 3353-3361 MacLeod A, Pautasso M, Jeger MJ & Haines-Young R (2010) Evolution of the international regulation of plant pests and challenges for future plant health. Food Security 2: 49-70 Moslonka-Lefebvre M, Pautasso M & Jeger MJ (2009) Disease spread in small-size directed networks: epidemic threshold, correlation between links to and from nodes, and clustering. Journal of Theoretical Biology 260: 402-411Moslonka-Lefebvre M, Finley A, Dorigatti I, Dehnen-Schmutz K, Harwood T, Jeger MJ, Xu XM, Holdenrieder O & Pautasso M (2011) Networks in plant epidemiology: from genes to landscapes, countries and continents. Phytopathology 101: 392-403Pautasso M (2009) Geographical genetics and the conservation of forest trees. Perspectives in Plant Ecology, Systematics and Evolution 11: 157-189Pautasso M, Dehnen-Schmutz K, Holdenrieder O, Pietravalle S, Salama N, Jeger MJ, Lange E & Hehl-Lange S (2010) Plant health and global change – some implications for landscape management. Biological Reviews 85: 729-755Pautasso M, Moslonka-Lefebvre M & Jeger MJ (2010) The number of links to and from the starting node as a predictor of epidemic size in small-size directed networks. Ecological Complexity 7: 424-432 Pautasso M, Xu XM, Jeger MJ, Harwood T, Moslonka-Lefebvre M & Pellis L (2010) Disease spread in small-size directed trade networks: the role of hierarchical categories. Journal of Applied Ecology 47: 1300-1309Xu XM, Harwood TD, Pautasso M & Jeger MJ (2009) Spatio-temporal analysis of an invasive plant pathogen (Phytophthora ramorum) in England and Wales. Ecography 32: 504-516