The use of Computerized Tomography in pig breeding
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Transcript of The use of Computerized Tomography in pig breeding
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www.norsvin.com 11
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The use of Computerized Tomography in pig breeding
Jørgen KongsroNorsvin
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Purpose
To give an overview to the use of Computerized Tomography (CT) in pig breeding
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Computed Tomography
4The use of Computerized Tomography in pig breedingEAAP 2011
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PixelsVoxels
5EAAP 2011 The use of Computerized Tomography in pig breeding
Texture
512
512
z z = Slice thickness
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Computed Tomography
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HU = 0; gray value = 1024
EAAP 2011 The use of Computerized Tomography in pig breeding
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Norsvin Delta test station
7EAAP 2011 The use of Computerized Tomography in pig breeding
Boar test station
3.500 boars tested annually (1800 landrace and 1700 duroc)
Boars are recruited from nucleus farms across Norway
- CT- FIRE (feed and weight)- Exterior evaluation
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Norsvin Delta test stationThe CT unit
8EAAP 2011 The use of Computerized Tomography in pig breeding
1000-1100 images per animal
10 min handling and scanning per animal
25 min image analysis time per animal
24 animals a day
72 animals a week
3.500 animals a year
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9EAAP 2011 The use of Computerized Tomography in pig breeding
GE Healthcare Lightspeed VCT Select 32
Multi-slice32 slices per rotation (upgradable to 64)
100 kW, 800 mA X-ray tube
0.4 s rotation time0.625 mm slice thickness190 cm scan length
Norsvin Delta test stationThe CT scanner
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10EAAP 2011 The use of Computerized Tomography in pig breeding
Norsvin Delta test stationThe CT software
MATLABImage processing toolboxAutomating
OSIRIXGraphic workstationsDICOM reader/writerNavigationVisualization
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11EAAP 2011 The use of Computerized Tomography in pig breeding
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12EAAP 2011 The use of Computerized Tomography in pig breeding
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Phenotyping
13EAAP 2011 The use of Computerized Tomography in pig breeding
Diagnostic imaging
Body composition
Carcass quality
Meat quality
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14EAAP 2011 The use of Computerized Tomography in pig breeding
Body compositionCarcass quality
www.eupigclass.net
Lean meat Fat Bone
Saleable meat yield Rest
Ham Belly Loin Shoulder
For body composition, it works!A matter of reference method; what is the gold standardBiological vs. commercial dissection
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15EAAP 2011 The use of Computerized Tomography in pig breeding
Meat quality
Marbling IMF
Fatty acid compositionFA
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16EAAP 2011 The use of Computerized Tomography in pig breeding
Intramuscular fat
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17EAAP 2011 The use of Computerized Tomography in pig breeding
Fatty acid composition(MUFA / PUFA)
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18EAAP 2011 The use of Computerized Tomography in pig breeding
Scapula morphology
Duroc Landrace
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19EAAP 2011 The use of Computerized Tomography in pig breeding
Scapula morphology
Duroc Landrace
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20EAAP 2011 The use of Computerized Tomography in pig breeding
Scapula morphology
Shape variance in the primate scapula, N. M. Young
© 2006 The Author Journal compilation © 2006 Anatomical Society of Great Britain and Ireland
629
For this reason, the former group was combined anddesignated ‘non-quadrupedal’ and the latter groupwas combined and designated ‘quadrupedal’.
Standard errors for shape variance were compara-ble across species. The highest standard errors wereassociated with small sample sizes in infants (e.g.
Cercopithecus
) or with juveniles of non-quadrupeds(e.g.
Hylobates
,
Pan troglodytes
and
Pongo
), but thesewere still small relative to observed shape variance.In all species, the landmarks that appeared to be themost variable in location were numbers 2–5, which areassociated with the shape of the scapular blade (Fig. 2).
Table 2 Shape variance (V ), standard error (SE), 95% confidence intervals, quadrupedalism index (QI) and eigenvalue variance (EV)
Species
Infant Juvenile Adult
QI EVV SE 95% CI V SE 95% CI V SE 95% CI
Alouatta belzebuth – – – – – – 0.0044 0.0004 0.0034–0.0050 0.59 0.0039Ateles geoffroyi – – – – – – 0.0059 0.0004 0.0048–0.0065 0.19 0.0034Cercocebus albigena – – – 0.0022 0.0002 0.0018–0.0023 0.0026 0.0002 0.0022–0.0029 0.54 0.0028Cercopithecus aethiops 0.0052 0.0011 0.0025–0.0065 0.0045 0.0006 0.0031–0.0053 0.0036 0.0003 0.0029–0.0040 0.59 0.0031Colobus guereza – – – 0.0031 0.0007 0.0017–0.0045 0.0040 0.0003 0.0031–0.0044 0.53 0.0028Gorilla gorilla 0.0071 0.0007 0.0052–0.0077 0.0057 0.0004 0.0048–0.0065 0.0074 0.0003 0.0066–0.0077 0.09 0.0035Hylobates lar – – – 0.0064 0.0008 0.0045–0.0077 0.0070 0.0005 0.0059–0.0080 0.00 0.0022Lagothrix lagothrica – – – – – – 0.0061 0.0005 0.0050–0.0069 0.22 0.0021Macaca fasicularis 0.0027 0.0004 0.0014–0.0031 0.0036 0.0005 0.0024–0.0044 0.0034 0.0003 0.0027–0.0039 0.74 0.0027Nasalis larvatus – – – – – – 0.0037 0.0003 0.0030–0.0043 0.60 0.0029Pan paniscus 0.0075 0.0015 0.0048–0.0100 – – – 0.0050 0.0006 0.0038–0.0060 0.14 0.0024Pan troglodytes 0.0076 0.0007 0.0059–0.0085 0.0081 0.0006 0.0067–0.0093 0.0072 0.0003 0.0065–0.0077 0.08 0.0018Papio anubis – – – 0.0023 0.0002 0.0017–0.0026 0.0034 0.0004 0.0022–0.0039 0.68 –Pongo pygmaeus – – – 0.0076 0.0010 0.0055–0.0091 0.0071 0.0005 0.0059–0.0079 0.12 0.0024Presbytis cristatus 0.0036 0.0004 0.0025–0.0040 0.0028 0.0004 0.0015–0.0032 0.0035 0.0003 0.0029–0.0040 0.69 0.0031Saimiri sciureus – – – 0.0039 0.0004 0.0029–0.0045 0.0033 0.0003 0.0025–0.0036 0.87 0.0036Symphalangus syndactylus – – – – – – 0.0060 0.0003 0.0052–0.0065 0.00 0.0020
Fig. 2 Three-dimensional scatterplots of Procrustes-aligned landmark data for adult Macaca fasicularis (left, blue) and Pan troglodytes (right, red). Macaques exhibit significantly less shape variance at this ontogenetic stage (V = 0.0034) and earlier stages as compared with chimpanzees (V = 0.0072) (t = 6.221, P = 0.000).
Young 2006. “Function, ontogeny and canalization of shape variance in the primate scapula.” Journal of anatomy 209(5):623-36.
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21EAAP 2011 The use of Computerized Tomography in pig breeding
Osteochondrosis
Olstad et al. 2008. “Micro-computed tomography of early lesions of osteochondrosis in the tarsus of foals.” Bone 43(3):574–583.
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22EAAP 2011 The use of Computerized Tomography in pig breeding
Empel & Sehested 1986. “Qualitative, Semiquantitative and Quantitative Diagnosis of Osteochondrosis in Pigs by Computed Tomography (CT).” Acta Agriculturae Scandinavica 36(2):186-194.
Osteochondrosis - quantitative
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23EAAP 2011 The use of Computerized Tomography in pig breeding
Requirements to apply CT in animal selection programs
Handling
Isolated units
Biosecurity
Large-scale breeding program to serve
Image analysis system for CT
Horn (1995)
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Conclusion
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• Body compositionHarmonization of the use of CT in commercial dissectionPrediction / estimation of cuts, saleable meat yield
• Meat qualityPrediction of IMF and fatty acid composition
• Diagnostic imagingLamenessInternal organsHerniaConformation and shapeExterior traits
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Conclusion
What benefits do CT give to a pig breeding company like Norsvin?
Before CT, there was half-sib test...
Genetic improvement:-> Carcass traits sampled from live animals-> Higher reliability-> Increased test capacity-> Multiple registrations backward in time
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www.norsvin.com 1