The Prokaryotes: Domains of Bacteria and Archaea
Transcript of The Prokaryotes: Domains of Bacteria and Archaea
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Copyright © 2013 Pearson Education, Inc. Lectures prepared by Christine L. Case
Chapter 11 The Prokaryotes:
Domains of Bacteria and
Archaea
© 2013 Pearson Education, Inc. Lectures prepared by Christine L. Case
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The Prokaryotes
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Domain Bacteria
Proteobacteria From the mythical Greek god Proteus, who could assume
many shapes Gram-negative Chemoheterotrophic
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The Alphaproteobacteria
11-1 Differentiate the alphaproteobacteria described in this chapter by drawing a dichotomous key.
Learning Objective
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The Alphaproteobacteria
Pelagibacter ubique Discovered by FISH technique 20% of prokaryotes in oceans 0.5% of all prokaryotes 1354 genes
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The Alphaproteobacteria
Human pathogens Bartonella
− B. henselae: cat-scratch disease Brucella: brucellosis Ehrlichia: tickborne
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The Alphaproteobacteria
Obligate intracellular parasites Ehrlichia: tickborne, ehrlichiosis Rickettsia: arthropod-borne, spotted fevers
−R. prowazekii: epidemic typhus −R. typhi: endemic murine typhus −R. rickettsii: Rocky Mountain spotted fever
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Figure 11.1 Rickettsias.
Slime layer Scattered rickettsias
Chicken embryo cell
Nucleus
Masses of rickettsias in nucleus
A rickettsial cell that has just been released from a host cell
Rickettsias grow only within a host cell, such as the chicken embryo cell shown here. Note the scattered rickettsias within the cell and the compact masses of rickettsias in the cell nucleus.
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The Alphaproteobacteria
Wolbachia: live in insects and other animals
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Applications of Microbiology 11.1a Wolbachia are red inside the cells of this fruit fly embryo.
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Applications of Microbiology 11.1b In an infected pair, only female hosts can reproduce.
Neither infected Uninfected offspring
Male infected No offspring
Female infected Infected offspring
Both infected Infected offspring
Unfertilized female infected Infected female offspring
Wolbachia
Females Males
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The Alphaproteobacteria
Have prosthecae Caulobacter: stalked bacteria found in lakes Hyphomicrobium: budding bacteria found in lakes
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Insert Fig 11.2b
Figure 11.2b Caulobacter.
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Figure 11.3 Hyphomicrobium, a type of budding bacterium.
Hypha
Bud
Bud
Holes in filter
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The Alphaproteobacteria
Plant pathogen Agrobacterium: insert a plasmid into plant cells,
inducing a tumor
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Figure 9.19 Crown gall disease on a rose plant.
Crown gall
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The Alphaproteobacteria
Chemoautotrophic Oxidize nitrogen for energy Fix CO2
−Nitrobacter: NH3 → NO2–
−Nitrosomonas: NO2– → NO3
–
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The Alphaproteobacteria
Nitrogen-fixing bacteria Azospirillum
−Grow in soil, using nutrients excreted by plants − Fix nitrogen
Rhizobium − Fix nitrogen in the roots of plants
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Figure 27.5 The formation of a root nodule.
An infection thread is formed, through which bacteria enter root cells.
Enlarged root cells form a nodule.
Bacteria change into bacteroids; packed root cells enlarge.
Rhizobia attach to root hair.
Pea plant
Root hairs
Rhizobia
Infection thread
Bacteroids
Root
Nodules
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The Alphaproteobacteria
Produce acetic acid from ethanol Acetobacter Gluconobacter
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Check Your Understanding Make a dichotomous key to distinguish the
orders of alphaproteobacteria described in this chapter. 11-1
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Chapter 11, unnamed figure, page 303.
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The Betaproteobacteria
11-2 Differentiate the betaproteobacteria described in this chapter by drawing a dichotomous key.
Learning Objective
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The Betaproteobacteria
Thiobacillus Chemoautotrophic; oxidize sulfur: H2S → SO4
2– Sphaerotilus Chemoheterotophic; form sheaths
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Figure 11.5 Sphaerotilus natans.
Bacterial cell
Sheath
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Figure 11.6 The gram-negative coccus Neisseria gonorrhoeae.
Capsule
Fimbriae
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Figure 11.4 Spirillum volutans.
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The Betaproteobacteria
Bordetella Chemoheterotrophic; rods B. pertussis
Burkholderia Nosocomial infections
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Figure 24.7 Ciliated cells of the respiratory system infected with Bordetella pertussis.
B. pertussis
Cilia
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Figure 27.19 Floc formed by an activated sludge system.
Bacterial cells embedded in particles of floc
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Check Your Understanding Make a dichotomous key to distinguish the
orders of betaproteobacteria described in this chapter. 11-2
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The Gammaproteobacteria
11-3 Differentiate the gammaproteobacteria described in this chapter by drawing a dichotomous key.
Learning Objective
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The Gammaproteobacteria
Pseudomonadales Pseudomonas
−Opportunistic pathogens −Metabolically diverse − Polar flagella
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Figure 11.7 Pseudomonas.
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The Gammaproteobacteria
Pseudomonadales Moraxella
−Conjunctivitis Azotobacter and Azomonas
−Nitrogen-fixing
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The Gammaproteobacteria
Legionellales Legionella
− Found in streams, warm-water pipes, cooling towers − L. pneumophilia
Coxiella −Q fever transmitted via aerosols or milk
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Figure 24.14b Coxiella burnetii, the cause of Q fever.
This cell has just divided; notice the endospore-like body (E), which is probably responsible for the relative resistance of the organism.
E
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The Gammaproteobacteria
Vibrionales Found in coastal water
− Vibrio cholerae causes cholera − V. parahaemolyticus causes gastroenteritis
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Figure 11.8 Vibrio cholerae.
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The Gammaproteobacteria
Enterobacteriales (enterics) Peritrichous flagella;
facultatively anaerobic
Enterobacter Erwinia Escherichia Klebsiella Proteus Salmonella Serratia Shigella Yersinia
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Figure 11.19 Streptomyces.
Filaments
Filament Conidiospores
Drawing of a typical streptomycete showing filamentous, branching growth with asexual reproductive conidiospores at the filament tips.
Coils of conidiospores supported by filaments of the streptomycete.
Conidiospores in coils
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The Gammaproteobacteria
Pasteurellales Pasteurella
−Cause pneumonia and septicemia Haemophilus
−Require X (heme) and V (NAD+, NADP+) factors
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The Gammaproteobacteria
Beggiatoa Chemoautotrophic; oxidize H2S to S0 for energy
Francisella Chemoheterotrophic; tularemia
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Check Your Understanding Make a dichotomous key to distinguish the
orders of gammaproteobacteria described in this chapter. 11-3
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The Deltaproteobacteria
11-4 Differentiate the deltaproteobacteria described in this chapter by drawing a dichotomous key.
Learning Objective
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Figure 11.10 Bdellovibrio bacteriovorus.
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The Deltaproteobacteria
Desulfovibrionales Use S instead of O2 as final electron acceptor
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Figure 11.11 Myxococcales.
Myxospores Myxospores are resistant resting cells released from sporangioles upon favorable conditions.
Germination Myxospores germinate and form gram-negative vegetative cells, which divide to reproduce.
Vegetative growth cycle Vegetative myxobacteria are motile by gliding, forming visible slime trails.
Aggregation Under favorable conditions, the vegetative cells swarm to central locations, forming an aggregation.
Mounding Aggregations of cells heap up into a mound, an early fruiting body.
Mounds of myxobacteria differentiate into a mature fruiting body, which produces myxospores packed within sporangioles.
Sporangiole
Myxobacteria fruiting body
Myxospores
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Check Your Understanding Make a dichotomous key to distinguish the
deltaproteobacteria described in this chapter. 11-4
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The Epsilonproteobacteria
11-5 Differentiate the epsilonproteobacteria described in this chapter by drawing a dichotomous key.
Learning Objective
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The Epsilonproteobacteria
Campylobacter One polar flagellum Gastroenteritis
Helicobacter Multiple flagella Peptic ulcers Stomach cancer
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Figure 11.12 Heliobacter pylori.
Flagella
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Check Your Understanding Make a dichotomous key to distinguish the
epsilonproteobacteria described in this chapter. 11-5
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The Gram-Positive Bacteria
11-6 Differentiate the genera of firmicutes described in this chapter by drawing a dichotomous key.
11-7 Differentiate the actinobacteria described in this chapter by drawing a dichotomous key.
Learning Objectives
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Firmicutes
Low G + C Gram-positive
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Clostridiales
Clostridium Endospore-producing Obligate anaerobes
Epulopiscium
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Figure 11.13 Clostridium difficile.
Endospore
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Figure 11.14 A giant prokaryote, Epulopiscium fishelsoni.
Epulopiscium
Paramecium
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Bacillales
Bacillus Endospore-producing rods
Staphylococcus Cocci
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Figure 11.15 Bacillus.
This Bacillus cereus cell is shown emerging from the endospore.
Endospore case
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Figure 11.16 Staphylococcus aureus.
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Lactobacillales
Generally aerotolerant anaerobes; lack an electron transport chain Lactobacillus Streptococcus Enterococcus Listeria
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Figure 11.17 Streptococcus.
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Mycoplasmatales
Wall-less; pleomorphic 0.1–0.24 µm M. pneumoniae
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Actinobacteria
High G + C Gram-positive
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Actinobacteria
Actinomyces Corynebacterium Frankia Gardnerella Mycobacterium Nocardia Propionibacterium Streptomyces
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Figure 11.19a Streptomyces.
Filaments
Drawing of a typical streptomycete showing filamentous, branching growth with asexual reproductive conidiospores at the filament tips.
(a)
Conidiospores in coils
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Figure 11.19b Streptomyces.
Filament Conidiospores
Coils of conidiospores supported by filaments of the streptomycete.
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Figure 11.20 Actinomyces.
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Check Your Understanding To which genus is Enterococcus more closely
related: Staphylococcus or Lactobacillus? 11-6 What group of bacteria makes most of the
commercially important antibiotics? 11-7
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Nonproteobacteria Gram-Negative Bacteria 11-8 Differentiate among planctomycetes,
chlamydias, Bacteroidetes, Cytophaga, and Fusobacteria by drawing a dichotomous key.
11-9 Compare and contrast purple and green photosynthetic bacteria with the cyanobacteria.
11-10 Describe the features of spirochetes and Deinococcus.
Learning Objectives
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Oxygenic photosynthesis Anoxygenic photosynthesis
Phototrophic
2H2O + CO2 light
(CH2O) + H2O + O2
2H2S + CO2 light
(CH2O) + H2O + 2S0
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Oxygenic Photosynthetic Bacteria
Cyanobacteria Gliding motility Fix nitrogen
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Figure 11.21 Cyanobacteria.
Heterocysts
(b) A unicellular, nonfilamentous cyanobacterium, Gloeocapsa. Groups of these cells, which divide by binary fission, are held together by the surrounding glycocalyx.
(a) Filamentous cyanobacterium showing heterocysts, in which nitrogen-fixing activity is located.
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Chlamydias
Chlamydia trachomatis Trachoma STI, urethritis
Chlamydophila pneumoniae Chlamydophila psittaci Psittacosis
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Figure 11.22a Chlamydias.
The bacterium’s infectious form, the elementary body, attaches to a host cell.
The host cell phagocytizes the elementary body, housing it in a vacuole.
The elementary body reorganizes to form a reticulate body.
The reticulate body divides successively, producing multiple reticulate bodies.
The reticulate bodies begin to convert back into elementary bodies.
The elementary bodies are released from the host cell.
Reticulate body
Host cell
Nucleus
Vacuole
Elementary body
Vacuole forming
Life cycle of the chlamydias, which takes about 48 hours to complete.
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Planctomycetes
Gemmata obscuriglobus Double internal membrane around DNA
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Figure 11.23 Gemmata obscuriglobus.
Nucleoid
Nuclear envelope
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Nonproteobacteria Gram-Negatives
Bacteroidetes Anaerobic
−Bacteroides are found in the mouth and large intestine −Cytophaga: degrade cellulose in soil
Fusobacterium Are found in the mouth May be involved in dental diseases
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Anoxygenic Photosynthetic Bacteria
Purple sulfur Purple nonsulfur Green sulfur Green nonsulfur
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Figure 11.25 Purple sulfur bacteria.
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Figure 11.26 Spirochetes.
This cross section of a spirochete shows numerous axial filaments between the dark cell and the outer sheath.
This micrograph of a portion of Treponema pallidum shows the sheath, which has shrunk away from the cell, and two axial filaments attached near one of the cell under the sheath.
Axial filaments
Sheath
Axial filaments
Sheath
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Deinococci-Thermus
Deinococcus radiodurans More resistant to radiation than are endospores
Thermus aquaticus Hot spring in Yellowstone National Park Source of Taq polymerase
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Check Your Understanding Which gram-negative group has a life cycle that
includes different stages? 11-8 Both the purple and green photosynthetic bacteria
and the photosynthetic cyanobacteria use plantlike photosynthesis to make carbohydrates. In what way does the photosynthesis carried out by these two groups differ from plant photosynthesis? 11-9
The axial filament distinguishes what genera of bacteria? 11-10
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Domain Archaea
11-11 Name a habitat for each group of archaea. Learning Objective
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Domain Archaea
Extremophiles Hyperthermophiles Pyrodictium Sulfolobus
Methanogens Methanobacterium
Extreme halophiles Halobacterium
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Figure 11.27 Archaea.
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Check Your Understanding What kind of archaea would populate solar
evaporating ponds? 11-11
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Microbial Diversity
11-12 List two factors that contribute to the limits of our knowledge of microbial diversity.
Learning Objective
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Microbial Diversity
Bacteria size range Thiomargarita (diameter of 750 µm) Carsonella ruddii (182 genes)
Metagenomics PCR GeoChip
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Figure 11.28 Thiomargarita namibiensis.
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Microbial Diversity
PCR indicates up to 10,000 bacteria per gram of soil Many bacteria have not been identified because they Have not been cultured Need special nutrients Are a part of complex food chains requiring the products of
other bacteria Need to be cultured to understand their metabolism and
ecological role
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Check Your Understanding How can you detect the presence of a
bacterium that cannot be cultured? 11-12