THE EFFECTS OF PHOTIC ENVIRONMENT ON MARINE MAMMAL MELANOPSINTHE EFFECTS OF PHOTIC ENVIRONMENT ON MARINE MAMMAL MELANOPSIN

Vanessa Ortiz Vanessa Ortiz 1*1*, April Triano , April Triano 2* 2* and Jeffry I. Fasick, Ph.D and Jeffry I. Fasick, Ph.D

11 B.S Biology (Biotechnology Option), Kean University, Union, NJ 07083, USA B.S Biology (Biotechnology Option), Kean University, Union, NJ 07083, USA 22 B.S Biology (General Option), Kean University, Union, NJ 07083, USA B.S Biology (General Option), Kean University, Union, NJ 07083, USA

* These students contributed equally to this research.* These students contributed equally to this research.

Studies of the retina from cetaceans (dolphins and whales) have revealed that it is quite different from its terrestrial counterparts in that its visual pigments are strongly blue-shifted (Fasick et al., 1998; Fasick & Robinson, 2000). The blue-shifted rod and cone pigments, as well as the lack of color vision found in the cetacean eye, are believed to be associated with the relatively monochromatic blue light available to the animals at foraging depth. A recently discovered class of retinal photopigment, melanopsin, has been shown to be closely associated with photoentrainment as well as directing the pupil response to light (Provencio et al., 1998). Our study is designed to determine which photic environment, surface or depth, is responsible for the spectral tuning properties of cetacean melanopsins. To date we have sequenced approximately 900 bp of the dolphin melanopsin cDNA. Alignments with mammalian melanopsin nucleotide sequences show that dolphin melanopsin, like the dolphin retinal visual pigments, is most closely related (90 % identity) to melanopsin from even-toed ungulates, such as the domestic cow (Bos taurus). Once the full length dolphin melanopsin cDNA is cloned, we will express, reconstitute and purify the resulting pigment to determine its absorption spectrum and compare it to the absorption spectrum determined from B. taurus melanopsin.

• Clone, sequence & express full-length & truncated carboxyl-tail dolphin melanopsin cDNAs

• Perform phylogenetic analyses of full-length dolphin melanopsin nucleotide and amino acid sequences with those of other vertebrate melanopsins to determine relatedness and evolutionary distances

• Perform sequence analyses to compare the evolutionary rates between the dolphin melanopsin and visual pigment opsin nucleotide and amino acid sequences

• Clone, sequence and express full-length & truncated melanopsin cDNA from cetaceans occupying different photic environments to understand which selection pressure, photoentrainment or pupillary light response, most influences the melanopsin protein

• Compare marine mammal melanopsin sequences and absorption maxima to each other, as well as with bovine melanopsin, to identify candidate sites for site-directed mutagenesis in order to determine the amino acids involved with spectral tuning of the melanopsin pigments

• Melanopsin is a novel photopigment found in specialized photosensitive ganglion cells of the retina.

• Although melanopsin is not involved with image formations, it is responsible for the light activation of the G-protein Gq typically found in invertebrates photoreceptors.

•Melanopsin is composed of an opsin protein covalently attached to the light absorbing chromophore 11-cis retinal.

• Melanopsin, when activated by light, sends signals through the axons of ganglion cells, to specific parts of the brain including the olivary pretectal nucleus (a center responsible for controlling the pupil of the eye) and the suprachiasmatic nucleus of the hypothalamus (the master pacemaker of circadian rhythms).

• Studies of the retina from cetaceans (dolphins and whales) have revealed that it is quite different from its terrestrial counterparts in that its visual pigments are strongly blue-shifted.

•The blue-shifted rod and cone pigments and lack of color vision found in the cetacean eye are believed to be associated with the relatively monochromatic blue light available to the animals at foraging depth.

• Align subsets of known vertebrate melanopsin amino acid and nucleotide sequences

• From these alignments, design degenerate oligonucleotide primers for use in PCR amplification of marine mammal melanopsin polynucleotide sequences

• PCR amplify from a dolphin retinal cDNA library and dolphin gDNA to determine if a) the dolphin possess a melanopsin-like gene and b) is so, is the gene transcribed into a functional mRNA transcript

• Sequence positive PCR products

• Incorporate sequence data into blast searches for identification based on homology

• Perform sequence alignments and construct phylogenetic trees to determine the evolutionary relationships to other vertebrate melanopsins

Bovine Melanopsin Amino Acid Positions

61 74 91 195 218 203 411

Squid Rhodopsin (0.3811)Mouse Melanopsin (0.1360)

Cat Melanopsin (0.0924)Human Melanopsin (0.1105)

Pig Melanopsin (0.0285)Dolphin Melanopsin (Tufts_3329_seq.2) (0.0967)

Cow Melanopsin (0.0058)Horse Melanopsin (0.0269)

Dog Melanopsin (0.0990)

Provencio et al. 2000

Structure of Human Melanopsin Gene

5’ 3’

Sense Primer Anti Primer

N.T. Position: 423 1400

> ref|XM_593123.3| PREDICTED: Bos taurus similar to opsin 4 (OPN4), mRNA Length=1437 GENE ID: 515152 OPN4 | opsin 4 [Bos taurus] Score = 1291 bits (699), Expect = 0.0 Identities = 830/894 (92%), Gaps = 7/894 (0%) Strand=Plus/Plus Query 2 GGCCATCGCCCTGGACCGCTACCTGGTGATCACACGCCCACTGGCCACCGTCGGGATGGT 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 GGCCATCGCCCTGGACCGCTACCTGGTGATCACACGCCCACTGGCCACCGTCGGGATGGT 545 Query 62 GTCCAAGAGGCGGGCGGCGCTTGTCCTGCTGGGCGTCTGGCTCTATGCCCTGGCTTGGAG 121 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 546 GTCCAAGAGGCGGGCCGCGCTTGTCCTGCTGGGCGTCTGGCTCTATGCCCTAGCTTGGAG 605 Query 122 TCTGCCGCCCTTCTTTGGCTGGAGTGCCTATGTGCCCGAGGGGCTGCTGACCTCTTGCTC 181 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 606 CCTGCCGCCCTTCTTTGGCTGGAGTGCCTATGTGCCCGAAGGCCTGCTGACCTCTTGCTC 665 Query 182 CTGGGACTACGTGAGCTTCACGCCATCGGTCCGCGCCTACACCATGCTGCTCTTCTGCTT 241 |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || Sbjct 666 CTGGGACTACGTGAGCTTCACGCCGTCCGTCCGCGCCTACACCATGCTGCTCTTCTGTTT 725 Query 242 TGTGTTCTTCCTCCCCCTGGTCGTCATCATCTACTGATACATCTTCATCTTCAAGGCCAT 301 |||||||||||||||| || || ||||||| ||||| ||||||||||||||||||||||| Sbjct 726 TGTGTTCTTCCTCCCCTTGCTCATCATCATTTACTGCTACATCTTCATCTTCAAGGCCAT 785 Query 302 CCGGGAGACGGGCCAAGCTCTCCAGACTTTCNGGG-CCAGCGAGGGGTGGTGGTGAGTG- 359 ||| ||||||||||||||||||||||| ||| ||| || |||| |||||| ||||||| Sbjct 786 CCGAGAGACGGGCCAAGCTCTCCAGACCTTC-GGGACCTGCGA-GGGTGGCAGTGAGTGT 843 Query 360 CCCCTGGCAACGGCAGCGTCTGCAGAACGAGTGGAAAATGGCCAAGATCGAGCTGTTGGT 419 |||| |||| |||||||| || ||||| ||||||||||||||||||||||||||| |||| Sbjct 844 CCCC-GGCAGCGGCAGCGGCTACAGAATGAGTGGAAAATGGCCAAGATCGAGCTGCTGGT 902 Query 420 CATCCTTCTCTTCGTGCTCTCCTGGGCCCCCTACTCCACTGTAGCCCTGATGGGCTTTGC 479 |||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 903 CATCCTCCTCTTTGTGCTCTCCTGGGCCCCCTACTCCACTGTCGCCCTGATGGGCTTTGC 962 Query 480 TGGGTACGCACATGTCCTGACGCCCTACATGAACTCGGTGCCAGCTGTCATCGCCAAGGC 539 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 963 TGGGTACGCACATATCCTGACGCCCTACATGAACTCGGTGCCAGCTGTCATTGCCAAGGC 1022 Query 540 CTCTGCCATCTACAACCCCATCATTTATGCCATCACCCACCCCAAGTACAGAATGGCCAT 599 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 1023 CTCTGCCATCTACAACCCCATCATTTACGCCATCACCCACCCCAAGTACAGATTGGCCAT 1082 Query 600 CGCCCAGCACCTGCCCTGCCTCGGGGTGCTGCTGGGCGTGTCAGGCCAGCGCACTGGCCT 659 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 1083 CGCCCAGCACCTGCCCTGCCTGGGGGTGCTGCTGGGCGTGTCGGGCCAGCGCACTGGCCT 1142 Query 660 GTACACCAGCTACCGCTTCACCCACCGCTCCACACTGAGCAGCCAGGCCTCAGACCTCAG 719 ||||||||||||||||| ||| || |||||||| ||||| ||||||||||| |||||||| Sbjct 1143 GTACACCAGCTACCGCTCCACTCATCGCTCCACGCTGAGTAGCCAGGCCTCGGACCTCAG 1202 Query 720 CTGGATCACTGGACGGAGGCGCCAGGTGTCCCTGGGCTCTGAGAGTGAGGTGGGCTGGAC 779 ||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1203 CTGGATCTCTGGACGGAGGCGCCAGGCATCCCTGGGCTCTGAGAGCGAGGTGGGCTGGAT 1262 Query 780 AGACACGGAGGTAACAGCTGCTTGGGGGACTGCCCAGCAAATGAGCGGGTGGTCCCCCTG 839 ||||| || | |||||||||||||||| ||| |||||| ||||||| ||||||||||| Sbjct 1263 GGACACAGAAGCAACAGCTGCTTGGGGGGCTGGCCAGCAGGTGAGCGGATGGTCCCCCTG 1322 Query 840 CAGTCAGGGCCTGGAGGATGTGGAAGCCAAGGCCCCT-CCCAAGTCCCANGGAC 892 ||||||| ||||||| ||||||||||||||||||| | |||| | |||| |||| Sbjct 1323 CAGTCAGCGCCTGGATGATGTGGAAGCCAAGGCCC-TGCCCAGGCCCCAGGGAC 1375

References

Fasick JI, Cronin TW, Hunt DM, Robinson PR. 1998. The visual pigments of the bottlenose dolphin (Tursiops truncatus). Vis Neurosci. 15(4):643-51.Fasick JI, Robinson PR. 2000. Spectral-tuning mechanisms of marine mammal rhodopsins and correlations with foraging depth. Vis Neurosci. 17(5):781-8. Provencio I, Jiang G, De Grip WJ, Hayes WP, Rollag MD. 1998. Melanopsin: An opsin in melanophores, brain, and eye. Proc Natl Acad Sci U S A. 95(1):340-5.Provencio I, Rodriguez IR, Jiang G, Hayes WP, Moreira EF, Rollag MD. 2000. A novel human opsin in the inner retina. J Neurosci. 20(2):600-5