The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin...

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The The Ecological Data Application Ecological Data Application System System (EDAS) (EDAS) for for upload upload of of biological data biological data to to STORET STORET Benjamin Jessup. Tetra Tech, Benjamin Jessup. Tetra Tech, Inc. Inc.

Transcript of The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin...

Page 1: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

TheThe Ecological Data Application SystemEcological Data Application System (EDAS)(EDAS)

forfor uploadupload ofof biological databiological data toto

STORETSTORET

Benjamin Jessup. Tetra Tech, Inc.Benjamin Jessup. Tetra Tech, Inc.

Page 2: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

Why use EDAS?Why use EDAS?

“ “ Do your Do your Bug-thinking Bug-thinking in EDAS ” in EDAS ”

Page 3: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

Ecological Data TypesEcological Data Types

• Metadata for Programs, Metadata for Programs, Projects, Station, Projects, Station, Samples, Replicates, Samples, Replicates, Personnel, and Personnel, and MethodsMethods

• Taxonomic census Taxonomic census data for Benthic data for Benthic Macroinvertebrates, Macroinvertebrates, Fish, and PeriphytonFish, and Periphyton

• Water QualityWater Quality

• Habitat Habitat AssessmentsAssessments

• Physical Physical CharacteristicsCharacteristics– Pebble CountsPebble Counts– Cross-sectionsCross-sections

Page 4: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.
Page 5: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.
Page 6: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

Data EntryData Entry

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Taxa Characteristics ReviewTaxa Characteristics Review

Navigate and Navigate and Update the ListUpdate the List

Taxonomic Taxonomic HierarchyHierarchy

Referential DataReferential Data

GraphicsGraphics

Taxon Taxon CharacteristicsCharacteristics

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Metric CalculationsMetric Calculations

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126 Stations, 312 Samples, 336 taxa collected from 1997-2000126 Stations, 312 Samples, 336 taxa collected from 1997-2000

Page 10: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

Alaska Data UploadsAlaska Data Uploads

• ENRI of UAA working with ADECENRI of UAA working with ADEC

• Biocriteria Development projectBiocriteria Development project

• Cook Inlet as pilot regionCook Inlet as pilot region

• 5474 biological results5474 biological results

• 966 water quality results966 water quality results

Page 11: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

EDAS and STORETEDAS and STORET

• EDAS incorporates STORET conventions EDAS incorporates STORET conventions and codes for sample types, methods, etc.and codes for sample types, methods, etc.

• Batch files are prepared in EDAS, exported Batch files are prepared in EDAS, exported to a text file, and imported in STORETto a text file, and imported in STORET

• EDAS currently supports data transfer for EDAS currently supports data transfer for

benthic macroinvertebrate and water benthic macroinvertebrate and water

quality dataquality data

Page 12: The Ecological Data Application System (EDAS) for upload of biological data to STORET Benjamin Jessup. Tetra Tech, Inc.

Preparation for Batch UploadPreparation for Batch Upload

• EDASEDAS– Required fields completed with meaningful dataRequired fields completed with meaningful data– Sample and Biological units uniquely identifiedSample and Biological units uniquely identified

• Sample IDs, Replicate IDs, Method IDs, PersonnelSample IDs, Replicate IDs, Method IDs, Personnel• Characteristic Groups and Row IDsCharacteristic Groups and Row IDs

• STORETSTORET– Metadata entered for:Metadata entered for:

• organization, stations, taxa, personnel, methods, etc.organization, stations, taxa, personnel, methods, etc.

– Determine complete replacement or partial uploadDetermine complete replacement or partial upload

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Batch File GenerationBatch File Generation

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Error ReductionError Reduction

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Save batch file to text fileSave batch file to text file

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STORET Batch Upload STORET Batch Upload

Dialogue from STORET screensDialogue from STORET screens

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Future DevelopmentsFuture Developments

• Support for upload of other data typesSupport for upload of other data types

• Coordination with SIMCoordination with SIM

• EDAS Analysis Pack for STORETEDAS Analysis Pack for STORET

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ftp://anon:[email protected]/anon/EDAS/ftp://anon:[email protected]/anon/EDAS/

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The EndThe End

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Relational DatabaseRelational Database

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Flexible Query DesignFlexible Query DesignThis slide will probably not be included

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Applications of EDASApplications of EDAS

• Biomonitoring data analysisBiomonitoring data analysis– 305(b) reporting305(b) reporting– 303(d) listing for aquatic life use303(d) listing for aquatic life use– Biocriteria developmentBiocriteria development– Discharge permitting Discharge permitting – Aquatic resource management plansAquatic resource management plans

• Communication of resultsCommunication of results– Summary reportsSummary reports– Data exportData export

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EDAS UsersEDAS Users

– AlaskaAlaska

– ArizonaArizona

– CaliforniaCalifornia

– ColoradoColorado

– GeorgiaGeorgia

– IllinoisIllinois

– Iowa Iowa

– KentuckyKentucky

– MarylandMaryland

– MassachusettsMassachusetts

– MississippiMississippi– TennesseeTennessee– Rhode IslandRhode Island– South DakotaSouth Dakota– TexasTexas– VirginiaVirginia– West VirginiaWest Virginia– WyomingWyoming– USGSUSGS

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Station Information

Sample Information

SampleTaxonomy

Metrics

Metric Scores

Data SummariesData SummariesThis slide will probably not be included

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