The Danish Biobank System · 2015-12-09 · • Unravel the molecular basis of disease subtypes and...
Transcript of The Danish Biobank System · 2015-12-09 · • Unravel the molecular basis of disease subtypes and...
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The Danish Biobank System – a unique resource for biomedical research and
development
Professor Stephen Hamilton-Dutoit Chair of Pathology, Aarhus University
Denmark
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Population = 5.7 million
Denmark – a great little country for biobank research
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• An organized collection of
human biological material
• The associated data, stored in
a readily analysable format
What is a Biobank?
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Biobanks hold the key to:
• Unravel the molecular basis of disease subtypes and enable precision medicine
• Understand gene-environmental/lifestyle interactions
• Develop biomarkers
• Identify new targets for therapy
• Boost development in drug discovery
Why are Biobanks Useful?
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Clinical Medicine = Precision Medicine
Precision medicine “an approach to disease treatment and prevention based on individual variability in genes, environment, and lifestyle for each person.”
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Precision Medicine
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Translational clinical research
Precision Medicine - the hunt for BIOMARKERS!
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1850s:
Every era has transformative events!
The birth of modern cancer histopathology
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Since 2000:
Every era has transformative events!
New ways to hunt for biomarkers of disease
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Biobanks are hot!
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Using Biobanks for Drug Discovery and Develoment
Zatloukal & Hainaut 2010
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Clinical knowledge
Electronic medical records
Biospecimens Molecular analysis
Linked health data
The Basis for Precision Medicine
DENMARK!
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• The world’s most valuable epidemiological research infrastructure
• Unique system of registers and clinical databases
• Enormous financial investment in registers
• Now – coordination of biobanks
• The key is the CPR-number system
Health Data Research– the Danish Model
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The Danish Registers
• Neonatal history
• Clinical history
• Specific disease register
• National Danish Pathology Databank
• Disease Screening
• Other laboratory tests
• Vaccination history
• Social, school and education
• Prescription database
• Clinical Quality databases
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The Danish Registers
• Neonatal history
• Clinical history
• Specific disease register
• National Danish Pathology Databank
• Disease Screening
• Other laboratory tests
• Vaccination history
• Social, school and education
• Prescription database
• Clinical Quality databases
CPR-number
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The Danish Registers
• Neonatal history
• Clinical history
• Specific disease register
• National Danish Pathology Databank
• Disease Screening
• Other laboratory tests
• Vaccination history
• Social, school and education
• Prescription database
• Clinical Quality databases
CPR-number
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Health data from cradle to grave
………and beyond the grave
The Danish Registers
Danish biobanks can follow disease over generations
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The Danish Biobanks
• Danish National Biobank
• Danish Cancer Society biobanks
• Danish National Birth Cohort biobank
• Danish Phenylketouria Cards (blood from all Danes since 1976
• The National Danish Cancer Biobank
• Danish Pathology Bank (approx. 25 million tissue samples)
• Disease specific biobanks
• Local hospital and research project biobanks
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Danish Biobanks – state of the art facilities
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Danish Biobanks – state of the art facilities
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Danish Biobanks - Organization
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Danish Biobank Register
BIOBANK REGISTER
ONLINE ACCESS
NATIONAL REGISTERS
Civil Registration
System Danish National Patient Registry Danish Family
Relations Database
Danish Medical Birth Registry
National Danish Pathology Registry
BIOBANKS
DK Cancer Society
Hospital Biobanks
Pathology Bank
National Biobank
DK Cancer Biobank
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Accessing Data and Specimens in the Danish Biobanks
• In principle, data and specimens are freely accessible • Easy online access
• Modest retrieval costs
• Necessary permissions
– Danish Data Protection Agency
– Ethical Board approval
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Accessing Data and Specimens in the Danish Biobanks
• See the video of how to do it here!
biobankdenmark.dk ”Register”
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The Danish National Biobank
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Danish Guthrie (PKU) Card Biobank
• Blood cards from all Danes since 1976 (ca. 2 million)
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The National Danish Cancer Biobank
www.cancerbiobank.dk/en/aboutus
• National, population based cancer biobank
• Collect blood, cells, tissues, molecules
• From all Danish cancer patients at first diagnosis
• 6 University-based centres
– Departments of Pathology
– Departments of Biochemistry
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The National Danish Cancer Biobank
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The National Danish Cancer Biobank
Local and Regional
• Biospecimen collection
• Biospecimen storage
• Online data registration
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The National Danish Cancer Biobank
Local and Regional
• Biospecimen collection
• Biospecimen storage
• Online data registration
National
• Administration
• Data management
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Specimens in the National Danish Cancer Biobank
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Specimens in the National Danish Cancer Biobank
Blood Tissue
Molecules miRNA DNA RNA
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The National Danish Cancer Biobank - Local Organization
Department of Oncology
• Obtains patient consent
• Blood sample
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The National Danish Cancer Biobank - Local Organization
Department of Oncology
• Obtains patient consent
• Blood sample
Blood specimen taken Cancer biopsy or operation
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The National Danish Cancer Biobank - Local Organization
Department of Biochemistry • Blood preparation & storage
Department of Pathology • Tissue selection & storage
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The National Danish Cancer Biobank - Local Organization
Department of Biochemistry • Blood preparation & storage
Department of Pathology • Tissue selection & storage
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Paraffin Block Archive, Institute of Pathology Aarhus University Hospital
• Routine diagnostic specimens from ca. 1960
• Stored indefinitely
• Millions of paraffin blocks
• A treasure chest for researchers
Part of Denmark’s largest biobank!
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The National Danish Pathology Data- and Tissue Bank
• National database
• Paraffin block archives stored at 19 pathology departments
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Danish National Pathology Registry
• Developed routine diagnostic for Danish pathologists
• Real-time updating of all pathology analyses performed throughout Denmark
• > 14 million biospecimens
• Complete from 1997 – some data back to 1960s
• CPR ID-number based
• Available for researchers
• Unique in the world
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• CPR-number based
• Enables powerful molecular epidemiological studies
• We can find >90% of paraffin blocks for 30 year-old cohorts
• Blocks suitable for molecular studies
Good for:
• Biomarker discovery and validation
• Cheap, efficient retrospective drug studies (phase 3 & 4)
http://www.patobank.dk/
Danish National Pathology Registry
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What can we do using the Danish National Pathology Registry?
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HOLYDAN: HOdgkin LYmphoma in DANmark
AIM • Study the molecular profile and viral association of
ALL cases of Hodgkin Lymphoma diagnosed in Denmark 1990-2010
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HOLYDAN: HOdgkin LYmphoma in DANmark
CPR
DK Pathology
Bank
DK Cancer Register
DK Cause of Death Register
DK Haematology Database
Civil Reg. System
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HOLYDAN: HOdgkin LYmphoma in DANmark
CPR
DK Pathology
Bank
DK Cancer Register
DK Cause of Death Register
DK Haematology Database
Civil Reg. System
• Database-linkage via CPR (ID) number
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HOLYDAN: HOdgkin LYmphoma in DANmark
CPR
DK Pathology
Bank
DK Cancer Register
DK Cause of Death Register
DK Haematology Database
Civil Reg. System
• Database-linkage via CPR (ID) number
• 2520 cases diagnosed as cHL identified (1990-2010)
• 2432 cases biopsied • Review - 52 not cHL • Paraffin block retrieved
in 2237 cases • (94% success rate)
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HOLYDAN: HOdgkin LYmphoma in DANmark
ON-GOING in >2200 cases!
• Protein studies – TMAs &immunohistochemistry
– proteomics
• DNA studies – GWAS
• RNA & miRNA – Gene expression profiling
(NanoString)
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The Danish Biobanking System - has the key components for success
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Japanese inspired garden in Aarhus, Denmark
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有難う 御座います
Tak!