The All-Species Living Tree (Release LTPs111):

February 2013

16S rRNA-based phylogenetic tree harboring all type strains of all species with validly published names up to August 2012.

Type species are highlighted in red. Incorrectly affiliated and ungrouped species are indicated by their valid family.

For suggestions please contact:linving-tree@arb-silva.de

For further information and downloads:www.elsevier.de/syapmwww.arb-silva.de/projects/living-treewww.arb-home.dewww.bacterio.cict.fr

References:

R. Munoz, P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, R. Rosselló-Móra. Release LTPs104 of the All-Species Living Tree. Syst. Appl. Microbiol. 34 (2011) 169-170. http://www.dx.doi.org/10.1016/j.syapm.2011.03.001

P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.-H. Schleifer, F.O. Glöckner, R. Rosselló- Móra. Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses. Syst. Appl. Microbiol. 33 (2010) 291-299. http://www.dx.doi.org/10.1016/j.syapm.2010.08.001

P. Yarza, M. Richter, J. Peplies, J. Euzéby, R. Amann, K.-H. Schleifer, W. Ludwig, F.O. Glöckner, R. Rosselló-Móra. The All-Species Living Tree Project: a 16S rRNA-based phylogenetic tree of all sequenced type strains. Syst. Appl. Microbiol. 31 (2008) 241-250. http://www.dx.doi.org/10.1016/j.syapm.2008.07.001

Bacteria (9340)

Proteobacteria (3196)

Gammaproteobacteria and Betaproteobacteria (2094)

Enterobacteriaceae and Pasteurellaceae (316)

GU810925, Erwinia oleae, Enterobacteriaceae

GU166291, Erwinia typographi, Enterobacteriaceae

GQ367478, Pantoea calida, Enterobacteriaceae

GQ367483, Pantoea gaviniae, Enterobacteriaceae

FR870447, Erwinia toletana, Enterobacteriaceae

AJ233413, Pantoea cypripedii, Enterobacteriaceae

DQ504305, Pantoea dispersa, Enterobacteriaceae

JF295057, Pantoea wallisii, Enterobacteriaceae

FN547376, Erwinia aphidicola, Enterobacteriaceae

Z96086, Erwinia persicina, Enterobacteriaceae

AJ233417, Erwinia rhapontici, Enterobacteriaceae

AM055716, Erwinia tasmaniensis, Enterobacteriaceae

AJ233410, Erwinia amylovora, type sp., Enterobacteriaceae

AB546198, Erwinia uzenensis, Enterobacteriaceae

EU216736, Pantoea eucrina, Enterobacteriaceae

AJ233414, Erwinia mallotivora, Enterobacteriaceae

JQ809696, Erwinia psidii, Enterobacteriaceae

Y13250, Erwinia tracheiphila, Enterobacteriaceae

AJ233423, Pantoea agglomerans, type sp., Enterobacteriaceae

EF688012, Pantoea vagans, Enterobacteriaceae

EF688009, Pantoea eucalypti, Enterobacteriaceae

EF688010, Pantoea anthophila, Enterobacteriaceae

EU216737, Pantoea conspicua, Enterobacteriaceae

EF688011, Pantoea deleyi, Enterobacteriaceae

EU216735, Pantoea brenneri, Enterobacteriaceae

U80196, Pantoea ananatis, Enterobacteriaceae

AY530795, Pantoea allii, Enterobacteriaceae

U80208, Pantoea stewartii subsp. stewartii, Enterobacteriaceae

EU216734, Pantoea septica, Enterobacteriaceae

AJ010486, Enterobacter pyrinus, Enterobacteriaceae

AB004748, Enterobacter gergoviae, Enterobacteriaceae

AJ508302, Enterobacter hormaechei, Enterobacteriaceae

AF530476, Escherichia vulneris, Enterobacteriaceae

AJ853891, Enterobacter ludwigii, Enterobacteriaceae

EU721605, Enterobacter mori, Enterobacteriaceae

Z96078, Enterobacter cancerogenus, Enterobacteriaceae

AB004744, Enterobacter asburiae, Enterobacteriaceae

Z96077, Enterobacter nimipressuralis, Enterobacteriaceae

U78182, Raoultella ornithinolytica, Enterobacteriaceae

AF129443, Raoultella planticola, type sp., Enterobacteriaceae

AB004750, Enterobacter aerogenes, Enterobacteriaceae

EF688007, Tatumella terrea, Enterobacteriaceae

AJ233437, Tatumella ptyseos, type sp., Enterobacteriaceae

FJ756351, Tatumella punctata, Enterobacteriaceae

AB021400, Pseudomonas flectens, Pseudomonadaceae

EU344769, Tatumella morbirosei, Enterobacteriaceae

DQ838096, Tatumella citrea, Enterobacteriaceae

AF008579, Kluyvera ascorbata, type sp., Enterobacteriaceae

AF047186, Kluyvera georgiana, Enterobacteriaceae

AF310217, Kluyvera intermedia, Enterobacteriaceae

AF310218, Kluyvera cryocrescens, Enterobacteriaceae

AF025368, Citrobacter braakii, Enterobacteriaceae

AF025369, Citrobacter murliniae, Enterobacteriaceae

AF025373, Citrobacter werkmanii, Enterobacteriaceae

AF129440, Klebsiella oxytoca, Enterobacteriaceae

AJ233408, Citrobacter freundii, type sp., Enterobacteriaceae

AB519796, Yokenella regensburgei, type sp., Enterobacteriaceae

AF025367, Citrobacter gillenii, Enterobacteriaceae

AJ233400, Buttiauxella agrestis, type sp., Enterobacteriaceae

AJ233401, Buttiauxella brennerae, Enterobacteriaceae

AJ233402, Buttiauxella ferragutiae, Enterobacteriaceae

AJ233403, Buttiauxella gaviniae, Enterobacteriaceae

AJ233406, Buttiauxella warmboldiae, Enterobacteriaceae

AJ233405, Buttiauxella noackiae, Enterobacteriaceae

JF295053, Pantoea rodasii, Enterobacteriaceae

JF295055, Pantoea rwandensis, Enterobacteriaceae

AJ233404, Buttiauxella izardii, Enterobacteriaceae

AB004749, Enterobacter amnigenus, Enterobacteriaceae

AJ508301, Enterobacter kobei, Enterobacteriaceae

Y17658, Raoultella terrigena, Enterobacteriaceae

EF059838, Cronobacter dublinensis subsp. lactaridi, Enterobacteriaceae

EF059892, Cronobacter dublinensis subsp. dublinensis, Enterobacteriaceae

EF059841, Cronobacter dublinensis subsp. lausannensis, Enterobacteriaceae

EF059845, Cronobacter muytjensii, Enterobacteriaceae

EF059877, Cronobacter universalis, Enterobacteriaceae

EF059891, Cronobacter turicensis, Enterobacteriaceae

EF059881, Cronobacter malonaticus, Enterobacteriaceae

EF088379, Cronobacter sakazakii, type sp., Enterobacteriaceae

FN539031, Cronobacter condimenti, Enterobacteriaceae

FJ267523, Shimwellia pseudoproteus, type sp., Enterobacteriaceae

FJ267520, Shimwellia blattae, Enterobacteriaceae

EF488759, Enterobacter oryzae, Enterobacteriaceae

AY563134, Enterobacter radicincitans, Enterobacteriaceae

EU672801, Enterobacter arachidis, Enterobacteriaceae

AJ508303, Enterobacter cowanii, Enterobacteriaceae

DQ273684, Enterobacter pulveris, Enterobacteriaceae

AJ508775, Escherichia albertii, Enterobacteriaceae

X80725, Escherichia coli, type sp., Enterobacteriaceae

X96963, Shigella flexneri, Enterobacteriaceae

AF530475, Escherichia fergusonii, Enterobacteriaceae

FR870445, Shigella sonnei, Enterobacteriaceae

X96966, Shigella dysenteriae, type sp., Enterobacteriaceae

HQ992945, Citrobacter koseri, Enterobacteriaceae

AB273741, Citrobacter youngae, Enterobacteriaceae

AY373829, Salmonella subterranea, Enterobacteriaceae

AY373830, Trabulsiella guamensis, type sp., Enterobacteriaceae

DQ453129, Trabulsiella odontotermitis, Enterobacteriaceae

FR870441, Citrobacter amalonaticus, Enterobacteriaceae

AF025371, Citrobacter farmeri, Enterobacteriaceae

AF025363, Citrobacter rodentium, Enterobacteriaceae

AF025364, Citrobacter sedlakii, Enterobacteriaceae

AF008580, Salmonella enterica subsp. arizonae, Enterobacteriaceae

EU014684, Salmonella enterica subsp. houtenae, Enterobacteriaceae

EU014680, Salmonella enterica subsp. indica, Enterobacteriaceae

EU014680, Salmonella enterica subsp. indica, Enterobacteriaceae

EU014685, Salmonella enterica subsp. salamae, Enterobacteriaceae

EU014688, Salmonella enterica subsp. diarizonae, Enterobacteriaceae

EF643377, Mangrovibacter plantisponsor, type sp., Enterobacteriaceae

AF029227, Salmonella bongori, Enterobacteriaceae

AE006468, Salmonella enterica subsp. enterica, type sp., Enterobacteriaceae

Z96079, Enterobacter cloacae subsp. dissolvens, Enterobacteriaceae

AJ251469, Enterobacter cloacae subsp. cloacae, type sp., Enterobacteriaceae

AF250285, Klebsiella singaporensis, Enterobacteriaceae

AJ783916, Klebsiella variicola, Enterobacteriaceae

X87276, Klebsiella pneumoniae subsp. pneumoniae, type sp., Enterobacteriaceae

Y17657, Klebsiella pneumoniae subsp. rhinoscleromatis, Enterobacteriaceae

AF130982, Klebsiella pneumoniae subsp. ozaenae, Enterobacteriaceae

AJ854062, Serratia ureilytica, Enterobacteriaceae

GU814270, Enterobacter soli, Enterobacteriaceae

AF493976, Cedecea davisae, type sp., Enterobacteriaceae

AB086230, Cedecea neteri, Enterobacteriaceae

AB050826, Edwardsiella ictaluri, Enterobacteriaceae

AB050827, Edwardsiella tarda, type sp., Enterobacteriaceae

AB050825, Edwardsiella hoshinae, Enterobacteriaceae

GU562337, Gibbsiella quercinecans, type sp., Enterobacteriaceae

AB004751, Serratia rubidaea, Enterobacteriaceae

AB061685, Serratia marcescens subsp. sakuensis, Enterobacteriaceae

EU036987, Serratia nematodiphila, Enterobacteriaceae

AJ233431, Serratia marcescens subsp. marcescens, type sp., Enterobacteriaceae

AJ233432, Serratia odorifera, Enterobacteriaceae

AJ233427, Serratia entomophila, Enterobacteriaceae

AJ233428, Serratia ficaria, Enterobacteriaceae

AF366383, Yersinia pestis, type sp., Enterobacteriaceae

AF366375, Yersinia pseudotuberculosis, Enterobacteriaceae

AM182404, Yersinia similis, Enterobacteriaceae

AF366385, Yersinia ruckeri, Enterobacteriaceae

AJ233407, Budvicia aquatica, type sp., Enterobacteriaceae

EF179119, Yersinia massiliensis, Enterobacteriaceae

AF366377, Yersinia bercovieri, Enterobacteriaceae

AJ627597, Yersinia aleksiciae, Enterobacteriaceae

AF366376, Yersinia aldovae, Enterobacteriaceae

AF366382, Yersinia mollaretii, Enterobacteriaceae

GQ451990, Yersinia pekkanenii, Enterobacteriaceae

AF366384, Yersinia rohdei, Enterobacteriaceae

AF366379, Yersinia frederiksenii, Enterobacteriaceae

AF366381, Yersinia kristensenii, Enterobacteriaceae

AF366380, Yersinia intermedia, Enterobacteriaceae

FJ717338, Yersinia nurmii, Enterobacteriaceae

DQ400782, Yersinia entomophaga, Enterobacteriaceae

FR729477, Yersinia enterocolitica subsp. palearctica, Enterobacteriaceae

AF366378, Yersinia enterocolitica subsp. enterocolitica, Enterobacteriaceae

AJ233426, Rahnella aquatilis, type sp., Enterobacteriaceae

M59155, Hafnia alvei, type sp., Enterobacteriaceae

AJ233422, Obesumbacterium proteus, type sp., Enterobacteriaceae

FM179943, Hafnia paralvei, Enterobacteriaceae

AJ233429, Serratia fonticola, Enterobacteriaceae

FJ790328, Serratia glossinae, Enterobacteriaceae

AJ233434, Serratia proteamaculans, Enterobacteriaceae

AJ233435, Serratia quinivorans, Enterobacteriaceae

AJ233430, Serratia grimesii, Enterobacteriaceae

AJ306725, Serratia liquefaciens, Enterobacteriaceae

AJ233433, Serratia plymuthica, Enterobacteriaceae

GU394001, Serratia symbiotica, Enterobacteriaceae

Pasteurellaceae (73)

AF228001, Gallibacterium anatis, type sp., Pasteurellaceae

L06078, Gallibacterium salpingitidis, Pasteurellaceae

EU423985, Gallibacterium melopsittaci, Pasteurellaceae

EU339199, Gallibacterium trehalosifermentans, Pasteurellaceae

AY216869, Volucribacter amazonae, Pasteurellaceae

AY216868, Volucribacter psittacicida, type sp., Pasteurellaceae

AY362921, Avibacterium gallinarum, type sp., Pasteurellaceae

M75070, Avibacterium volantium, Pasteurellaceae

AY498868, Avibacterium paragallinarum, Pasteurellaceae

M75058, Avibacterium avium, Pasteurellaceae

AF024525, Actinobacillus succinogenes, Pasteurellaceae

AF549387, Histophilus somni, type sp., Pasteurellaceae

AY362907, Haemophilus haemoglobinophilus, Pasteurellaceae

AY362891, Actinobacillus indolicus, Pasteurellaceae

AY362909, Haemophilus parasuis, Pasteurellaceae

AY362886, Actinobacillus capsulatus, Pasteurellaceae

M75061, Haemophilus paracuniculus, Pasteurellaceae

AY362919, Pasteurella canis, Pasteurellaceae

M75052, Pasteurella oralis, Pasteurellaceae

AY362920, Pasteurella dagmatis, Pasteurellaceae

AY362925, Pasteurella stomatis, Pasteurellaceae

AF294412, Pasteurella multocida subsp. gallicida, Pasteurellaceae

AF294410, Pasteurella multocida subsp. multocida, type sp., Pasteurellaceae

AF294411, Pasteurella multocida subsp. septica, Pasteurellaceae

AF224292, Haemophilus felis, Pasteurellaceae

AY508816, Nicoletella semolina, type sp., Pasteurellaceae

HM439607, Mannheimia caviae, Pasteurellaceae

AF053893, Mannheimia varigena, Pasteurellaceae

AF053902, Mannheimia granulomatis, Pasteurellaceae

AF053889, Mannheimia glucosida, Pasteurellaceae

M75080, Mannheimia haemolytica, type sp., Pasteurellaceae

AF053900, Mannheimia ruminalis, Pasteurellaceae

FJ463881, Basfia succiniciproducens, type sp., Pasteurellaceae

AY362927, Bibersteinia trehalosi, type sp., Pasteurellaceae

AY362917, Pasteurella bettyae, Pasteurellaceae

AY362893, Actinobacillus minor, Pasteurellaceae

M75076, Haemophilus paraphrohaemolyticus, Pasteurellaceae

AY172727, Actinobacillus anseriformium, Pasteurellaceae

AY362892, Actinobacillus lignieresii, type sp., Pasteurellaceae

M75074, Actinobacillus pleuropneumoniae, Pasteurellaceae

AY362900, Actinobacillus ureae, Pasteurellaceae

AF247716, Actinobacillus equuli subsp. haemolyticus, Pasteurellaceae

AF381186, Actinobacillus equuli subsp. equuli, Pasteurellaceae

AY362890, Actinobacillus hominis, Pasteurellaceae

AY362899, Actinobacillus suis, Pasteurellaceae

L06084, Actinobacillus arthritidis, Pasteurellaceae

AY362918, Pasteurella caballi, Pasteurellaceae

AY362894, Actinobacillus muris, Pasteurellaceae

GU966652, Necropsobacter rosorum, type sp., Pasteurellaceae

AY362895, Actinobacillus rossii, Pasteurellaceae

AY362922, Pasteurella langaaensis, Pasteurellaceae

U65583, Actinobacillus porcinus, Pasteurellaceae

Y17189, Lonepinella koalarum, type sp., Pasteurellaceae

AJ243202, Pasteurella skyensis, Pasteurellaceae

AJ243202, Pasteurella skyensis, Pasteurellaceae

X89379, Phocoenobacter uteri, type sp., Pasteurellaceae

M63900, Haemophilus ducreyi, Pasteurellaceae

AY362889, Actinobacillus delphinicola, Pasteurellaceae

Y09653, Actinobacillus scotiae, Pasteurellaceae

GU295084, Bisgaardia hudsonensis, type sp., Pasteurellaceae

M75039, Aggregatibacter actinomycetemcomitans, type sp., Pasteurellaceae

AY362906, Aggregatibacter aphrophilus, Pasteurellaceae

M75043, Aggregatibacter segnis, Pasteurellaceae

AY362897, Actinobacillus seminis, Pasteurellaceae

AY362923, Pasteurella mairii, Pasteurellaceae

U66491, Pasteurella aerogenes, Pasteurellaceae

AJ290755, Haemophilus pittmaniae, Pasteurellaceae

AY362924, Pasteurella pneumotropica, Pasteurellaceae

AY362905, Haemophilus aegyptius, Pasteurellaceae

M35019, Haemophilus influenzae, type sp., Pasteurellaceae

AY362908, Haemophilus parainfluenzae, Pasteurellaceae

JF506642, Haemophilus sputorum, Pasteurellaceae

EU331064, Chelonobacter oris, type sp., Pasteurellaceae

AY362926, Pasteurella testudinis, Pasteurellaceae

FJ612598, Orbus hercynius, type sp., Unclassified Gammaproteobacteria

AY837748, Thorsellia anophelis, type sp., Enterobacteriaceae

AY264674, Arsenophonus nasoniae, type sp., Enterobacteriaceae

AJ560630, Photorhabdus luminescens subsp. kayaii, Enterobacteriaceae

AJ007404, Photorhabdus luminescens subsp. laumondii, Enterobacteriaceae

HM072284, Photorhabdus luminescens subsp. kleinii, Enterobacteriaceae

EU930342, Photorhabdus luminescens subsp. hainanensis, Enterobacteriaceae

AJ007359, Photorhabdus luminescens subsp. akhurstii, Enterobacteriaceae

EU930345, Photorhabdus luminescens subsp. caribbeanensis, Enterobacteriaceae

AJ560634, Photorhabdus temperata subsp. thracensis, Enterobacteriaceae

AY280572, Photorhabdus asymbiotica subsp. australis, Enterobacteriaceae

EU136626, Photorhabdus temperata subsp. cinerea, Enterobacteriaceae

AY278657, Photorhabdus temperata subsp. khanii, Enterobacteriaceae

EF467859, Photorhabdus temperata subsp. stackebrandtii, Enterobacteriaceae

AJ007405, Photorhabdus temperata subsp. temperata, Enterobacteriaceae

EU930339, Photorhabdus temperata subsp. tasmaniensis, Enterobacteriaceae

Z76755, Photorhabdus asymbiotica subsp. asymbiotica, Enterobacteriaceae

X82248, Photorhabdus luminescens subsp. luminescens, type sp., Enterobacteriaceae

AY278675, Xenorhabdus beddingii, Enterobacteriaceae

D78010, Xenorhabdus poinarii, Enterobacteriaceae

DQ211709, Xenorhabdus doucetiae, Enterobacteriaceae

DQ211717, Xenorhabdus romanii, Enterobacteriaceae

DQ211710, Xenorhabdus griffiniae, Enterobacteriaceae

DQ211715, Xenorhabdus mauleonii, Enterobacteriaceae

AY278674, Xenorhabdus nematophila, type sp., Enterobacteriaceae

HQ877464, Xenorhabdus magdalenensis, Enterobacteriaceae

AY521244, Xenorhabdus cabanillasii, Enterobacteriaceae

AM040494, Xenorhabdus indica, Enterobacteriaceae

DQ211713, Xenorhabdus miraniensis, Enterobacteriaceae

AJ810295, Xenorhabdus szentirmaii, Enterobacteriaceae

AY278673, Xenorhabdus bovienii, Enterobacteriaceae

AJ810293, Xenorhabdus budapestensis, Enterobacteriaceae

AJ810294, Xenorhabdus ehlersii, Enterobacteriaceae

DQ211716, Xenorhabdus kozodoii, Enterobacteriaceae

DQ205450, Xenorhabdus koppenhoeferi, Enterobacteriaceae

D78008, Xenorhabdus japonica, Enterobacteriaceae

DQ205447, Xenorhabdus vietnamensis, Enterobacteriaceae

AJ810292, Xenorhabdus innexi, Enterobacteriaceae

DQ202309, Xenorhabdus stockiae, Enterobacteriaceae

DQ211719, Xenorhabdus hominickii, Enterobacteriaceae

DQ885256, Proteus mirabilis, Enterobacteriaceae

DQ885258, Proteus penneri, Enterobacteriaceae

DQ885257, Proteus vulgaris, type sp., Enterobacteriaceae

FR733709, Proteus hauseri, Enterobacteriaceae

DQ885259, Cosenzaea myxofaciens, type sp., Enterobacteriaceae

AJ301684, Providencia alcalifaciens, type sp., Enterobacteriaceae

AM040489, Providencia rustigianii, Enterobacteriaceae

HM038004, Providencia burhodogranariea, Enterobacteriaceae

AM040490, Providencia heimbachae, Enterobacteriaceae

AM040492, Providencia rettgeri, Enterobacteriaceae

AM040495, Providencia vermicola, Enterobacteriaceae

AF008581, Providencia stuartii, Enterobacteriaceae

HM038003, Providencia sneebia, Enterobacteriaceae

DQ358146, Morganella morganii subsp. sibonii, Enterobacteriaceae

AJ301681, Morganella morganii subsp. morganii, type sp., Enterobacteriaceae

DQ358135, Morganella psychrotolerans, Enterobacteriaceae

AJ233421, Leminorella grimontii, type sp., Enterobacteriaceae

AJ233424, Pragia fontium, type sp., Enterobacteriaceae

AJ233416, Lonsdalea quercina subsp. quercina, Enterobacteriaceae

U80210, Brenneria salicis, type sp., Enterobacteriaceae

JF311441, Lonsdalea quercina subsp. iberica, Enterobacteriaceae

JF311442, Lonsdalea quercina subsp. britannica, Enterobacteriaceae

AM774412, Biostraticola tofi, type sp., Enterobacteriaceae

M99060, Sodalis glossinidius, type sp., Enterobacteriaceae

AJ233418, Brenneria rubrifaciens, Enterobacteriaceae

AF520707, Dickeya dadantii, Enterobacteriaceae

AF520708, Dickeya dianthicola, Enterobacteriaceae

Z96096, Dickeya paradisiaca, Enterobacteriaceae

AJ233412, Dickeya chrysanthemi, type sp., Enterobacteriaceae

AF520712, Dickeya dadantii subsp. dieffenbachiae, Enterobacteriaceae

AF520711, Dickeya zeae, Enterobacteriaceae

U80203, Brenneria nigrifluens, Enterobacteriaceae

AJ233409, Brenneria alni, Enterobacteriaceae

AF273037, Samsonia erythrinae, type sp., Enterobacteriaceae

AJ223407, Pectobacterium carotovorum subsp. odoriferum, Enterobacteriaceae

AJ233411, Pectobacterium carotovorum subsp. carotovorum, type sp., Enterobacteriaceae

AJ223409, Pectobacterium cacticida, Enterobacteriaceae

U80199, Pectobacterium wasabiae, Enterobacteriaceae

Z96090, Pectobacterium atrosepticum, Enterobacteriaceae

U80198, Pectobacterium betavasculorum, Enterobacteriaceae

X60418, Plesiomonas shigelloides, type sp., Enterobacteriaceae

Aeromonadaceae and Succinivibrionaceae (42)

FJ230076, Aeromonas sanarellii, Aeromonadaceae

FJ230077, Aeromonas taiwanensis, Aeromonadaceae

X71121, Aeromonas enteropelogenes, Aeromonadaceae

X60408, Aeromonas punctata subsp. punctata, Aeromonadaceae

AJ508765, Aeromonas hydrophila subsp. dhakensis, Aeromonadaceae

EU085557, Aeromonas aquariorum, Aeromonadaceae

X74674, Aeromonas punctata subsp. caviae, Aeromonadaceae

AM262151, Aeromonas hydrophila subsp. ranae, Aeromonadaceae

X60410, Aeromonas media, Aeromonadaceae

DQ207728, Aeromonas hydrophila subsp. hydrophila, type sp., Aeromonadaceae

FR870443, Aeromonas hydrophila subsp. anaerogenes, Aeromonadaceae

FR870443, Aeromonas hydrophila subsp. anaerogenes, Aeromonadaceae

Succinivibrionaceae (6)

U96412, Anaerobiospirillum succiniciproducens, type sp., Succinivibrionaceae

Y17600, Succinivibrio dextrinosolvens, type sp., Succinivibrionaceae

AJ420985, Anaerobiospirillum thomasii, Succinivibrionaceae

AB490810, Succinatimonas hippei, type sp., Succinivibrionaceae

Y17599, Succinimonas amylolytica, type sp., Succinivibrionaceae

Y15992, Ruminobacter amylophilus, type sp., Succinivibrionaceae

X92889, Tolumonas auensis, type sp., Aeromonadaceae

GU370947, Tolumonas osonensis, Aeromonadaceae

DQ013306, Aeromonas sharmana, Aeromonadaceae

AJ009859, Aeromonas salmonicida subsp. smithia, Aeromonadaceae

FM999971, Aeromonas piscicola, Aeromonadaceae

AB027542, Aeromonas salmonicida subsp. masoucida, Aeromonadaceae

X60407, Aeromonas salmonicida subsp. achromogenes, Aeromonadaceae

X60406, Aeromonas bestiarum, Aeromonadaceae

AY987751, Aeromonas salmonicida subsp. salmonicida, Aeromonadaceae

AF134065, Aeromonas salmonicida subsp. pectinolytica, Aeromonadaceae

AY532690, Aeromonas molluscorum, Aeromonadaceae

FJ976900, Aeromonas rivuli, Aeromonadaceae

AJ224309, Aeromonas encheleia, Aeromonadaceae

AJ224308, Aeromonas popoffii, Aeromonadaceae

X60412, Aeromonas sobria, Aeromonadaceae

DQ504429, Aeromonas bivalvium, Aeromonadaceae

X60411, Aeromonas eucrenophila, Aeromonadaceae

AJ458402, Aeromonas tecta , Aeromonadaceae

X71120, Aeromonas ichthiosmia, Aeromonadaceae

X60414, Aeromonas veronii, Aeromonadaceae

FJ230078, Aeromonas fluvialis, Aeromonadaceae

X60413, Aeromonas jandaei, Aeromonadaceae

X60416, Aeromonas schubertii, Aeromonadaceae

GQ365710, Aeromonas diversa, Aeromonadaceae

AJ536821, Aeromonas simiae, Aeromonadaceae

Vibrionaceae (128)

AJ293802, Vibrio pelagius, Vibrionaceae

AJ514916, Vibrio fortis, Vibrionaceae

X99761, Vibrio mytili, Vibrionaceae

X99762, Vibrio diabolicus, Vibrionaceae

AB428897, Vibrio azureus, Vibrionaceae

AB428909, Vibrio sagamiensis, Vibrionaceae

AF388386, Vibrio parahaemolyticus, Vibrionaceae

X74714, Vibrio natriegens, Vibrionaceae

GU078672, Vibrio communis, Vibrionaceae

GU018180, Vibrio owensii, Vibrionaceae

AB562589, Vibrio jasicida, Vibrionaceae

AY750575, Vibrio harveyi, Vibrionaceae

AJ316187, Vibrio rotiferianus, Vibrionaceae

X56576, Vibrio alginolyticus, Vibrionaceae

X56575, Vibrio campbellii, Vibrionaceae

FJ009624, Vibrio atypicus, Vibrionaceae

X74723, Vibrio proteolyticus, Vibrionaceae

GQ397859, Vibrio xiamenensis, Vibrionaceae

X74716, Vibrio nereis, Vibrionaceae

GU929925, Vibrio maritimus, Vibrionaceae

GU929924, Vibrio variabilis, Vibrionaceae

X74717, Vibrio nigripulchritudo, Vibrionaceae

DQ451211, Vibrio sinaloensis, Vibrionaceae

AJ316172, Vibrio brasiliensis, Vibrionaceae

GU223601, Vibrio caribbeanicus, Vibrionaceae

AJ440005, Vibrio coralliilyticus, Vibrionaceae

AJ316171, Vibrio neptunius, Vibrionaceae

AJ345063, Vibrio hepatarius, Vibrionaceae

X74725, Vibrio tubiashii, Vibrionaceae

AJ316181, Vibrio xuii, Vibrionaceae

EF032499, Vibrio albensis, Vibrionaceae

X76337, Vibrio cholerae, type sp., Vibrionaceae

X74713, Vibrio mimicus, Vibrionaceae

EF488079, Vibrio porteresiae, Vibrionaceae

DQ847123, Vibrio rhizosphaerae, Vibrionaceae

AF462458, Vibrio ruber, Vibrionaceae

EU144014, Vibrio mangrovi, Vibrionaceae

X74705, Vibrio gazogenes, Vibrionaceae

X76335, Vibrio fluvialis, Vibrionaceae

X76336, Vibrio furnissii, Vibrionaceae

EU143360, Vibrio areninigrae, Vibrionaceae

AY254040, Vibrio hispanicus, Vibrionaceae

X74701, Vibrio diazotrophicus, Vibrionaceae

GQ352641, Vibrio plantisponsor, Vibrionaceae

X74698, Vibrio cincinnatiensis, Vibrionaceae

X74711, Vibrio metschnikovii, Vibrionaceae

AM235737, Vibrio anguillarum, Vibrionaceae

X74718, Vibrio ordalii, Vibrionaceae

X74715, Vibrio navarrensis, Vibrionaceae

X76333, Vibrio vulnificus, Vibrionaceae

X74689, Vibrio aestuarianus, Vibrionaceae

FJ968722, Vibrio casei, Vibrionaceae

DQ097523, Vibrio litoralis, Vibrionaceae

AB013297, Vibrio rumoiensis, Vibrionaceae

FJ847833, Vibrio marisflavi, Vibrionaceae

AJ421444, Vibrio penaeicida, Vibrionaceae

Y08430, Vibrio tapetis, Vibrionaceae

Y13830, Vibrio pectenicida, Vibrionaceae

AM162657, Vibrio kanaloae, Vibrionaceae

AJ515230, Vibrio splendidus, Vibrionaceae

AM162656, Vibrio cyclitrophicus, Vibrionaceae

EU541605, Vibrio gallaecicus, Vibrionaceae

AJ278881, Vibrio lentus, Vibrionaceae

AJ316192, Vibrio tasmaniensis, Vibrionaceae

EF599163, Vibrio atlanticus, Vibrionaceae

EF599164, Vibrio artabrorum, Vibrionaceae

EF599162, Vibrio celticus, Vibrionaceae

EF094888, Vibrio gigantis, Vibrionaceae

AJ316199, Vibrio chagasii, Vibrionaceae

EF094887, Vibrio crassostreae, Vibrionaceae

AJ491290, Vibrio pomeroyi, Vibrionaceae

AJ316194, Vibrio pacinii, Vibrionaceae

X74710, Vibrio mediterranei, Vibrionaceae

X74719, Vibrio orientalis, Vibrionaceae

AJ630103, Vibrio ponticus, Vibrionaceae

AJ437616, Aliivibrio logei, Vibrionaceae

X70643, Aliivibrio salmonicida, Vibrionaceae

AB464964, Aliivibrio sifiae, Vibrionaceae

AB464964, Aliivibrio sifiae, Vibrionaceae

AJ132227, Aliivibrio wodanis, Vibrionaceae

EU541604, Aliivibrio finisterrensis, Vibrionaceae

X74702, Aliivibrio fischeri, type sp., Vibrionaceae

AY257972, Vibrio gallicus, Vibrionaceae

AY155585, Vibrio superstes, Vibrionaceae

DQ922915, Vibrio comitans, Vibrionaceae

DQ922920, Vibrio inusitatus, Vibrionaceae

DQ914239, Vibrio rarus, Vibrionaceae

EF599161, Vibrio breoganii, Vibrionaceae

AY426980, Vibrio ezurae, Vibrionaceae

AY426979, Vibrio neonatus, Vibrionaceae

AB000390, Vibrio halioticoli, Vibrionaceae

AJ310647, Vibrio agarivorans, Vibrionaceae

EU082035, Vibrio hangzhouensis, Vibrionaceae

AJ421445, Vibrio ichthyoenteri, Vibrionaceae

U46579, Vibrio scophthalmi, Vibrionaceae

FN421434, Vibrio hippocampi, Vibrionaceae

GQ281380, Vibrio stylophorae, Vibrionaceae

X74699, Salinivibrio costicola subsp. costicola, type sp., Vibrionaceae

AJ640132, Salinivibrio costicola subsp. alcaliphilus, Vibrionaceae

AM279734, Salinivibrio sharmensis, Vibrionaceae

AB285018, Salinivibrio siamensis, Vibrionaceae

AF057016, Salinivibrio costicola subsp. vallismortis, Vibrionaceae

DQ092443, Salinivibrio proteolyticus, Vibrionaceae

AF118021, Enterovibrio calviensis, Vibrionaceae

AM942722, Enterovibrio nigricans, Vibrionaceae

AJ842343, Enterovibrio coralii, Vibrionaceae

AJ514909, Grimontia hollisae, type sp., Vibrionaceae

AJ316208, Enterovibrio norvegicus, type sp., Vibrionaceae

AY551089, Photobacterium halotolerans, Vibrionaceae

FN796493, Photobacterium aphoticum, Vibrionaceae

AY960847, Photobacterium ganghwense, Vibrionaceae

D25307, Photobacterium angustum, Vibrionaceae

D25310, Photobacterium phosphoreum, type sp., Vibrionaceae

AB428873, Photobacterium aquimaris, Vibrionaceae

AY643710, Photobacterium iliopiscarium, Vibrionaceae

AY341439, Photobacterium kishitanii, Vibrionaceae

AY781193, Photobacterium aplysiae, Vibrionaceae

AY554009, Photobacterium lipolyticum, Vibrionaceae

D21226, Photobacterium profundum, Vibrionaceae

AB016982, Photobacterium indicum, Vibrionaceae

AY538749, Photobacterium frigidiphilum, Vibrionaceae

GQ386822, Photobacterium swingsii, Vibrionaceae

GU065210, Photobacterium jeanii, Vibrionaceae

DQ534014, Photobacterium lutimaris, Vibrionaceae

AJ842344, Photobacterium rosenbergii, Vibrionaceae

GQ260188, Photobacterium gaetbulicola, Vibrionaceae

X78105, Photobacterium damselae subsp. piscicida, Vibrionaceae

AB032015, Photobacterium damselae subsp. damselae, Vibrionaceae

X74686, Photobacterium leiognathi, Vibrionaceae

AF168367, Oceanimonas baumannii, Aeromonadaceae

AY538714, Oceanimonas smirnovii, Aeromonadaceae

AB019390, Oceanimonas doudoroffii, type sp., Aeromonadaceae

DQ195675, Zobellella denitrificans, type sp., Aeromonadaceae

HM475140, Zobellella aerophila, Aeromonadaceae

DQ195676, Zobellella taiwanensis, Aeromonadaceae

DQ190441, Oceanisphaera donghaensis, Aeromonadaceae

HQ171441, Oceanisphaera sediminis, Aeromonadaceae

FN377705, Oceanisphaera arctica, Aeromonadaceae

AJ550470, Oceanisphaera litoralis, type sp., Aeromonadaceae

HQ340607, Oceanisphaera ostreae, Aeromonadaceae

FM955224, Gallaecimonas pentaromativorans, type sp., Unclassified Gammaproteobacteria

Colwelliaceae (17)

U85846, Colwellia psychrotropica, Colwelliaceae

U14581, Colwellia rossensis, Colwelliaceae

AB002630, Colwellia maris, Colwelliaceae

AB094412, Colwellia piezophila, Colwelliaceae

AB011364, Colwellia psychrerythraea, type sp., Colwelliaceae

DQ055844, Colwellia aestuarii, Colwelliaceae

FJ889599, Colwellia chukchiensis, Colwelliaceae

DQ007434, Colwellia polaris, Colwelliaceae

EU599214, Colwellia asteriadis, Colwelliaceae

U85845, Colwellia demingiae, Colwelliaceae

AB369380, Thalassomonas actiniarum, Colwelliaceae

AJ294747, Thalassomonas viridans, type sp., Colwelliaceae

AB369381, Thalassomonas haliotis, Colwelliaceae

AY194066, Thalassomonas ganghwensis, Colwelliaceae

DQ212914, Thalassomonas agarivorans, Colwelliaceae

AY643537, Thalassomonas loyana, Colwelliaceae

HM237288, Thalassomonas agariperforans, Colwelliaceae

AB076561, Agarivorans albus, type sp., Alteromonadaceae

GQ200591, Agarivorans gilvus, Alteromonadaceae

FJ167390, Aliagarivorans marinus, type sp., Alteromonadaceae

FJ167391, Aliagarivorans taiwanensis, Alteromonadaceae

DQ913890, Celerinatantimonas diazotrophica, type sp., Celerinatantimonadaceae

Idiomarinaceae (21)

EU723884, Idiomarina maris, Idiomarinaceae

HQ537484, Aliidiomarina taiwanensis, type sp., Idiomarinaceae

GU471247, Idiomarina xiamenensis, Idiomarinaceae

FJ768737, Idiomarina aestuarii, Idiomarinaceae

EF212001, Idiomarina sediminum, Idiomarinaceae

DQ118948, Idiomarina taiwanensis, Idiomarinaceae

EF486355, Pseudidiomarina salinarum, Idiomarinaceae

EU600204, Idiomarina donghaiensis, Idiomarinaceae

EU423908, Idiomarina marina, Idiomarinaceae

EU423907, Idiomarina tainanensis, Idiomarinaceae

EU600203, Idiomarina maritima, Idiomarinaceae

DQ342238, Pseudidiomarina homiensis, Idiomarinaceae

FJ906745, Idiomarina aquimaris, Idiomarinaceae

FM877003, Idiomarina insulisalsae, Idiomarinaceae

AJ440214, Idiomarina baltica, Idiomarinaceae

AY526861, Idiomarina fontislapidosi, Idiomarinaceae

AY635468, Idiomarina seosinensis, Idiomarinaceae

AF052741, Idiomarina zobellii, Idiomarinaceae

AF288370, Idiomarina loihiensis, Idiomarinaceae

AY526862, Idiomarina ramblicola, Idiomarinaceae

AF052740, Idiomarina abyssalis, type sp., Idiomarinaceae

Psychromonadaceae (14)

AB374544, Psychromonas agarivorans, Psychromonadaceae

AB365352, Psychromonas heitensis, Psychromonadaceae

AB365352, Psychromonas heitensis, Psychromonadaceae

AB094413, Psychromonas hadalis, Psychromonadaceae

AJ416756, Psychromonas profunda, Psychromonadaceae

AB052160, Psychromonas kaikoae, Psychromonadaceae

AB023378, Psychromonas marina, Psychromonadaceae

AF374385, Psychromonas arctica, Psychromonadaceae

AB304805, Psychromonas aquimarina, Psychromonadaceae

AB304806, Psychromonas macrocephali, Psychromonadaceae

AB304808, Psychromonas ossibalaenae, Psychromonadaceae

AB304804, Psychromonas japonica, Psychromonadaceae

FJ822615, Psychromonas boydii, Psychromonadaceae

U73721, Psychromonas ingrahamii, Psychromonadaceae

Y14697, Psychromonas antarctica, type sp., Psychromonadaceae

Pseudoalteromonadaceae (37)

X98336, Pseudoalteromonas antarctica, Pseudoalteromonadaceae

AY040230, Pseudoalteromonas translucida, Pseudoalteromonadaceae

AY387858, Pseudoalteromonas aliena, Pseudoalteromonadaceae

AY563031, Pseudoalteromonas marina, Pseudoalteromonadaceae

X82140, Pseudoalteromonas undina, Pseudoalteromonadaceae

X67024, Pseudoalteromonas haloplanktis, type sp., Pseudoalteromonadaceae

X82146, Pseudoalteromonas nigrifaciens, Pseudoalteromonadaceae

DQ787199, Pseudoalteromonas arctica, Pseudoalteromonadaceae

AF082562, Pseudoalteromonas elyakovii, Pseudoalteromonadaceae

AY040229, Pseudoalteromonas paragorgicola, Pseudoalteromonadaceae

AF082564, Pseudoalteromonas distincta, Pseudoalteromonadaceae

AJ417594, Pseudoalteromonas agarivorans, Pseudoalteromonadaceae

X82134, Pseudoalteromonas atlantica, Pseudoalteromonadaceae

X82143, Pseudoalteromonas espejiana, Pseudoalteromonadaceae

X82136, Pseudoalteromonas carrageenovora, Pseudoalteromonadaceae

AF316144, Pseudoalteromonas issachenkonii, Pseudoalteromonadaceae

AF214730, Pseudoalteromonas tetraodonis, Pseudoalteromonadaceae

AJ507251, Pseudoalteromonas mariniglutinosa, Pseudoalteromonadaceae

U85855, Pseudoalteromonas prydzensis, Pseudoalteromonadaceae

FJ754319, Pseudoalteromonas donghaensis, Pseudoalteromonadaceae

FJ404721, Pseudoalteromonas lipolytica, Pseudoalteromonadaceae

AF297958, Pseudoalteromonas flavipulchra, Pseudoalteromonadaceae

AF144036, Pseudoalteromonas maricaloris, Pseudoalteromonadaceae

Z25522, Pseudoalteromonas tunicata , Pseudoalteromonadaceae

AF172987, Pseudoalteromonas ulvae, Pseudoalteromonadaceae

AB090232, Pseudoalteromonas piscicida, Pseudoalteromonadaceae

AF007286, Pseudoalteromonas peptidolytica, Pseudoalteromonadaceae

X82147, Pseudoalteromonas rubra, Pseudoalteromonadaceae

X82135, Pseudoalteromonas aurantia, Pseudoalteromonadaceae

X82137, Pseudoalteromonas citrea, Pseudoalteromonadaceae

X82138, Pseudoalteromonas denitrificans, Pseudoalteromonadaceae

AF332880, Pseudoalteromonas phenolica, Pseudoalteromonadaceae

AY769918, Pseudoalteromonas spongiae, Pseudoalteromonadaceae

X82144, Pseudoalteromonas luteoviolacea, Pseudoalteromonadaceae

DQ011289, Pseudoalteromonas byunsanensis, Pseudoalteromonadaceae

AF316891, Pseudoalteromonas ruthenica, Pseudoalteromonadaceae

AB545807, Psychrosphaera saromensis, type sp., Pseudoalteromonadaceae

Moritellaceae (8)

AJ252022, Moritella abyssi, Moritellaceae

EF192283, Moritella dasanensis, Moritellaceae

AJ252023, Moritella profunda, Moritellaceae

AJ132226, Moritella viscosa, Moritellaceae

AB008797, Moritella yayanosii, Moritellaceae

D21224, Moritella japonica, Moritellaceae

AB038033, Moritella marina, type sp., Moritellaceae

AB364966, Paramoritella alkaliphila, type sp., Moritellaceae

Shewanellaceae (59)

AY579751, Shewanella halifaxensis, Shewanellaceae

CP000851, Shewanella pealeana, Shewanellaceae

AB081757, Shewanella marinintestina, Shewanellaceae

AB081762, Shewanella sairae, Shewanellaceae

AB204519, Shewanella pneumatophori, Shewanellaceae

AF420312, Shewanella fidelis, Shewanellaceae

AB081760, Shewanella schlegeliana, Shewanellaceae

AB094598, Shewanella kaireitica, Shewanellaceae

AJ551089, Shewanella psychrophila, Shewanellaceae

AJ551090, Shewanella piezotolerans, Shewanellaceae

D21225, Shewanella violacea, Shewanellaceae

X82131, Shewanella benthica, Shewanellaceae

AB201475, Shewanella abyssi, Shewanellaceae

U85907, Shewanella gelidimarina, Shewanellaceae

AB094597, Shewanella surugensis, Shewanellaceae

AY579749, Shewanella canadensis, Shewanellaceae

FR733715, Shewanella sediminis, Shewanellaceae

CP000821, Shewanella sediminis, Shewanellaceae

X82132, Shewanella hanedai, Shewanellaceae

CP000961, Shewanella woodyi, Shewanellaceae

AY579752, Shewanella atlantica, Shewanellaceae

AY485225, Shewanella aquimarina, Shewanellaceae

DQ286387, Shewanella loihica, Shewanellaceae

AY485224, Shewanella marisflavi, Shewanellaceae

AB205570, Shewanella algidipiscicola, Shewanellaceae

AY653177, Shewanella colwelliana, Shewanellaceae

AY170366, Shewanella waksmanii, Shewanellaceae

AF005249, Shewanella algae, Shewanellaceae

GQ260190, Shewanella upenei, Shewanellaceae

HM016084, Shewanella indica, Shewanellaceae

FM203122, Shewanella fodinae, Shewanellaceae

GQ245918, Shewanella dokdonensis, Shewanellaceae

FM210033, Shewanella chilikensis, Shewanellaceae

EF178282, Shewanella haliotis, Shewanellaceae

FJ041083, Shewanella corallii, Shewanellaceae

AF005248, Shewanella amazonensis, Shewanellaceae

EU290154, Shewanella marina, Shewanellaceae

AY326275, Shewanella donghaensis, Shewanellaceae

AF295592, Shewanella olleyana, Shewanellaceae

AF500075, Shewanella pacifica, Shewanellaceae

AF145921, Shewanella japonica, Shewanellaceae

AB205571, Shewanella glacialipiscicola, Shewanellaceae

AB205576, Shewanella morhuae, Shewanellaceae

AJ000214, Shewanella baltica, Shewanellaceae

AF005251, Shewanella oneidensis, Shewanellaceae

FR733713, Shewanella profunda, Shewanellaceae

X81623, Shewanella putrefaciens, type sp., Shewanellaceae

FJ589031, Shewanella xiamenensis, Shewanellaceae

AJ609571, Shewanella decolorationis, Shewanellaceae

AB205566, Shewanella hafniensis, Shewanellaceae

AB205566, Shewanella hafniensis, Shewanellaceae

AJ300834, Shewanella livingstonensis, Shewanellaceae

AM980877, Shewanella vesiculosa, Shewanellaceae

U85903, Shewanella frigidimarina, Shewanellaceae

GU564402, Shewanella arctica, Shewanellaceae

EU143361, Shewanella basaltis, Shewanellaceae

AJ311964, Shewanella denitrificans, Shewanellaceae

AY190533, Shewanella gaetbuli, Shewanellaceae

DQ180743, Shewanella irciniae, Shewanellaceae

DQ167234, Shewanella spongiae, Shewanellaceae

AB252732, Paraferrimonas sedimenticola, type sp., Ferrimonadaceae

Ferrimonadaceae (5)

X93021, Ferrimonas balearica, type sp., Ferrimonadaceae

AB193751, Ferrimonas marina, Ferrimonadaceae

DQ778094, Ferrimonas senticii, Ferrimonadaceae

AB245515, Ferrimonas futtsuensis, Ferrimonadaceae

AB245514, Ferrimonas kyonanensis, Ferrimonadaceae

D89929, Algicola bacteriolytica, type sp., Pseudoalteromonadaceae

AB063324, Algicola sagamiensis, Pseudoalteromonadaceae

GQ168584, Rheinheimera aquatica, Chromatiaceae

AY701891, Rheinheimera texasensis, Chromatiaceae

DQ874340, Rheinheimera tangshanensis, Chromatiaceae

EF575565, Rheinheimera soli, Chromatiaceae

DQ298025, Rheinheimera chironomi, Chromatiaceae

EF076757, Rheinheimera aquimaris, Chromatiaceae

AJ441080, Rheinheimera baltica, type sp., Chromatiaceae

FJ169968, Rheinheimera nanhaiensis, Chromatiaceae

AB073132, Rheinheimera pacifica, Chromatiaceae

EF660759, Alishewanella aestuarii, Alteromonadaceae

EU817498, Alishewanella jeotgali, Alteromonadaceae

AF144407, Alishewanella fetalis, type sp., Alteromonadaceae

EU909459, Alishewanella agri, Alteromonadaceae

GQ505294, Alishewanella tabrizica, Alteromonadaceae

AM183347, Rheinheimera perlucida, Chromatiaceae

AF250323, Alkalimonas amylolytica, type sp., Unclassified Gammaproteobacteria

X92130, Alkalimonas delamerensis, Unclassified Gammaproteobacteria

AB270706, Alkalimonas collagenimarina, Unclassified Gammaproteobacteria

GQ262000, Catenovulum agarivorans, type sp., Alteromonadaceae

Alteromonadaceae (26)

Y18228, Alteromonas macleodii, type sp., Alteromonadaceae

DQ836766, Alteromonas simiduii, Alteromonadaceae

AF529060, Alteromonas marina, Alteromonadaceae

DQ836765, Alteromonas tagae, Alteromonadaceae

AY428573, Alteromonas litorea, Alteromonadaceae

AY682202, Alteromonas addita, Alteromonadaceae

AJ295715, Alteromonas stellipolaris, Alteromonadaceae

AM885866, Alteromonas genovensis, Alteromonadaceae

AY926460, Alteromonas hispanica, Alteromonadaceae

DQ343294, Bowmanella denitrificans, type sp., Alteromonadaceae

EU440951, Bowmanella pacifica, Alteromonadaceae

AY553295, Salinimonas chungwhensis, type sp., Alteromonadaceae

FJ847832, Aestuariibacter aggregatus, Alteromonadaceae

AY207503, Aestuariibacter halophilus, Alteromonadaceae

AY207502, Aestuariibacter salexigens, type sp., Alteromonadaceae

AB473549, Aestuariibacter litoralis, Alteromonadaceae

EU183316, Glaciecola lipolytica, Alteromonadaceae

AY787042, Glaciecola nitratireducens, Alteromonadaceae

U85854, Glaciecola pallidula, Alteromonadaceae

DQ784575, Glaciecola agarilytica, Alteromonadaceae

AB247623, Glaciecola chathamensis, Alteromonadaceae

AJ293820, Glaciecola polaris, Alteromonadaceae

AJ488501, Glaciecola mesophila, Alteromonadaceae

DQ007436, Glaciecola psychrophila, Alteromonadaceae

EU365479, Glaciecola arctica, Alteromonadaceae

U85853, Glaciecola punicea, type sp., Alteromonadaceae

JF330773, Methylophaga lonarensis, Piscirickettsiaceae

AY694421, Methylophaga muralis, Piscirickettsiaceae

AF384373, Methylophaga alcalica, Piscirickettsiaceae

DQ660915, Methylophaga thiooxydans, Piscirickettsiaceae

X95461, Methylophaga sulfidovorans, Piscirickettsiaceae

DQ463161, Methylophaga aminisulfidivorans, Piscirickettsiaceae

X95460, Methylophaga thalassica, Piscirickettsiaceae

X95459, Methylophaga marina, type sp., Piscirickettsiaceae

L34955, Cycloclasticus pugetii, type sp., Piscirickettsiaceae

EF495157, Methylomicrobium alcaliphilum, Methylococcaceae

AF307138, Methylomicrobium buryatense, Methylococcaceae

D89279, Methylomicrobium japanense, Methylococcaceae

AJ132384, Methylomicrobium kenyense, Methylococcaceae

X72775, Methylomicrobium pelagicum, Methylococcaceae

X72767, Methylomicrobium agile, type sp., Methylococcaceae

X72777, Methylomicrobium album, Methylococcaceae

X72773, Methylobacter whittenburyi, Methylococcaceae

HQ676599, Methylococcus mobilis, Methylococcaceae

AF177297, Methylosarcina quisquiliarum, Methylococcaceae

AF177296, Methylosarcina fibrata, type sp., Methylococcaceae

AY007296, Methylosarcina lacus, Methylococcaceae

AF304195, Methylobacter luteus, type sp., Methylococcaceae

AF304197, Methylobacter marinus, Methylococcaceae

X72776, Methylomonas aurantiaca, Methylococcaceae

X72778, Methylomonas fodinarum, Methylococcaceae

AB538964, Methylomonas koyamae, Methylococcaceae

AJ131369, Methylomonas scandinavica, Methylococcaceae

AF304196, Methylomonas methanica, type sp., Methylococcaceae

AF152597, Methylobacter psychrophilus, Methylococcaceae

AJ414655, Methylobacter tundripaludum, Methylococcaceae

DQ119050, Methylosoma difficile, type sp., Methylococcaceae

AB501287, Methylovulum miyakonense, type sp., Methylococcaceae

U67929, Methylosphaera hansonii, type sp., Methylococcaceae

AJ404731, Thiomicrospira arctica, Piscirickettsiaceae

AJ404732, Thiomicrospira psychrophila, Piscirickettsiaceae

AF013975, Thiomicrospira chilensis, Piscirickettsiaceae

AF013974, Thiomicrospira frisia, Piscirickettsiaceae

L40810, Thiomicrospira crunogena, Piscirickettsiaceae

AB166731, Thiomicrospira thermophila, Piscirickettsiaceae

DQ390450, Thiomicrospira halophila, Piscirickettsiaceae

D86374, Hydrogenovibrio marinus, type sp., Piscirickettsiaceae

AF013978, Thiomicrospira kuenenii, Piscirickettsiaceae

AF126548, Thioalkalimicrobium aerophilum, type sp., Piscirickettsiaceae

AF126549, Thioalkalimicrobium sibiricum, Piscirickettsiaceae

AF329082, Thioalkalimicrobium cyclicum, Piscirickettsiaceae

DQ900623, Thioalkalimicrobium microaerophilum, Piscirickettsiaceae

L40809, Thiomicrospira pelophila, type sp., Piscirickettsiaceae

L40809, Thiomicrospira pelophila, type sp., Piscirickettsiaceae

AF016046, Thiomicrospira thyasirae, Piscirickettsiaceae

AB495251, Cocleimonas flava, type sp., Thiotrichaceae

X87277, Leucothrix mucor, type sp., Thiotrichaceae

AF432145, Sedimenticola selenatireducens, type sp., Unclassified Gammaproteobacteria

Halomonadaceae (94)

AF212202, Halomonas neptunia, Halomonadaceae

FN433898, Halomonas titanicae, Halomonadaceae

AJ564880, Halomonas alkaliantarctica, Halomonadaceae

AY245449, Halomonas boliviensis, Halomonadaceae

AJ306893, Halomonas variabilis, Halomonadaceae

FJ429198, Halomonas zhanjiangensis, Halomonadaceae

AF212204, Halomonas sulfidaeris, Halomonadaceae

AM229315, Halomonas janggokensis, Halomonadaceae

EF144148, Halomonas subterranea, Halomonadaceae

EF144147, Halomonas arcis, Halomonadaceae

AM229314, Halomonas gomseomensis, Halomonadaceae

EU557315, Halomonas vilamensis, Halomonadaceae

AM941388, Halomonas stevensii, Halomonadaceae

AM941396, Halomonas hamiltonii, Halomonadaceae

X92150, Halomonas magadiensis, Halomonadaceae

AM941399, Halomonas johnsoniae, Halomonadaceae

AJ306888, Halomonas aquamarina, Halomonadaceae

AJ306891, Halomonas meridiana, Halomonadaceae

AF212206, Halomonas axialensis, Halomonadaceae

AJ640133, Halomonas alkaliphila, Halomonadaceae

AJ306894, Halomonas venusta, Halomonadaceae

AF212218, Halomonas hydrothermalis, Halomonadaceae

EF622233, Halomonas andesensis, Halomonadaceae

L42619, Halomonas halodurans, Halomonadaceae

EU909458, Halomonas jeotgali, Halomonadaceae

AJ306892, Halomonas subglaciescola, Halomonadaceae

AJ417388, Halomonas halocynthiae, Halomonadaceae

EU541349, Halomonas fontilapidosi, Halomonadaceae

EF613112, Halomonas cerina, Halomonadaceae

AB021386, Chromohalobacter beijerinckii, Halomonadaceae

AB105159, Chromohalobacter japonicus, Halomonadaceae

AJ295143, Chromohalobacter canadensis, Halomonadaceae

AY373448, Chromohalobacter sarecensis, Halomonadaceae

AJ277205, Chromohalobacter nigrandesensis, Halomonadaceae

X87219, Chromohalobacter marismortui, type sp., Halomonadaceae

AJ295144, Chromohalobacter israelensis, Halomonadaceae

CP000285, Chromohalobacter salexigens , Halomonadaceae

DQ280368, Halomonas kribbensis, Halomonadaceae

HM026177, Halomonas rifensis, Halomonadaceae

EF674852, Halomonas lutea, Halomonadaceae

EF421176, Halomonas xianhensis, Halomonadaceae

AJ320530, Halomonas muralis, Halomonadaceae

EU218533, Halomonas ilicicola, Halomonadaceae

X93493, Halomonas pantelleriensis, Halomonadaceae

EU085033, Halomonas korlensis, Halomonadaceae

FJ984862, Halomonas daqiaonensis, Halomonadaceae

DQ421808, Halomonas gudaonensis, Halomonadaceae

FJ418176, Aidingimonas halophila, type sp., Halomonadaceae

DQ641495, Modicisalibacter tunisiensis, type sp., Halomonadaceae

EF121854, Halomonas daqingensis, Halomonadaceae

X92417, Halomonas desiderata, Halomonadaceae

AY962237, Halomonas kenyensis, Halomonadaceae

AF054286, Halomonas campisalis, Halomonadaceae

AJ515365, Halomonas campaniensis, Halomonadaceae

AY962236, Halomonas mongoliensis, Halomonadaceae

EF121853, Halomonas shengliensis, Halomonadaceae

AF211860, Halomonas alimentaria, Halomonadaceae

L04942, Halomonas halodenitrificans, Halomonadaceae

AY268080, Halomonas ventosae, Halomonadaceae

EF527874, Halomonas caseinilytica, Halomonadaceae

AM238662, Halomonas sinaiensis, Halomonadaceae

X67023, Halomonas elongata, type sp., Halomonadaceae

X87218, Halomonas eurihalina, Halomonadaceae

AJ306889, Halomonas halmophila, Halomonadaceae

EF442769, Halomonas sabkhae, Halomonadaceae

AY858696, Halomonas almeriensis, Halomonadaceae

L42615, Halomonas cupida, Halomonadaceae

AM229317, Halomonas denitrificans, Halomonadaceae

EF144149, Halomonas saccharevitans, Halomonadaceae

AJ271864, Halomonas maura, Halomonadaceae

EF613113, Halomonas nitroreducens, Halomonadaceae

HM242216, Halomonas stenophila, Halomonadaceae

AM941744, Halomonas halophila, Halomonadaceae

AJ295145, Halomonas salina, Halomonadaceae

AJ616910, Halomonas organivorans, Halomonadaceae

AY382579, Halomonas koreensis, Halomonadaceae

L42616, Halomonas pacifica, Halomonadaceae

EF527873, Halomonas salifodinae, Halomonadaceae

AJ427626, Salinicola halophilus, Halomonadaceae

AM229316, Salinicola salarius, Halomonadaceae

DQ979342, Salinicola socius, type sp., Halomonadaceae

AY489405, Halomonas anticariensis, Halomonadaceae

EU822512, Halomonas xinjiangensis, Halomonadaceae

AY671975, Halomonas taeanensis, Halomonadaceae

AM941746, Kushneria aurantia, type sp., Halomonadaceae

FJ667549, Kushneria sinocarnis, Halomonadaceae

DQ888315, Kushneria avicenniae, Halomonadaceae

AF251143, Kushneria marisflavi, Halomonadaceae

AJ427627, Kushneria indalinina, Halomonadaceae

AJ306890, Cobetia marina, type sp., Halomonadaceae

EU909460, Cobetia crustatorum , Halomonadaceae

DQ421388, Halotalea alkalilenta, type sp., Halomonadaceae

AF211871, Zymobacter palmae, type sp., Halomonadaceae

Y13299, Carnimonas nigrificans, type sp., Halomonadaceae

AB098510, Marinospirillum insulare, Oceanospirillaceae

AB006770, Marinospirillum megaterium, Oceanospirillaceae

AB006769, Marinospirillum minutulum, type sp., Oceanospirillaceae

AF275713, Marinospirillum alkaliphilum, Oceanospirillaceae

EU375807, Marinospirillum celere, Oceanospirillaceae

AB006766, Pseudospirillum japonicum, type sp., Oceanospirillaceae

DQ403810, Reinekea blandensis, Oceanospirillaceae

GQ456131, Reinekea aestuarii, Oceanospirillaceae

AJ561121, Reinekea marinisedimentorum, type sp., Oceanospirillaceae

Saccharospirillaceae (3)

EF177670, Saccharospirillum salsuginis, Saccharospirillaceae

GQ250189, Saccharospirillum aestuarii, Saccharospirillaceae

GQ250189, Saccharospirillum aestuarii, Saccharospirillaceae

AJ315983, Saccharospirillum impatiens, type sp., Saccharospirillaceae

Litoricolaceae (2)

EF176580, Litoricola lipolytica, type sp., Litoricolaceae

FJ943234, Litoricola marina, Litoricolaceae

Oceanospirillaceae (38)

DQ492749, Marinomonas arctica, Oceanospirillaceae

AJ833000, Marinomonas polaris, Oceanospirillaceae

AB074193, Marinomonas primoryensis, Oceanospirillaceae

AJ627909, Marinomonas ushuaiensis, Oceanospirillaceae

EU188444, Marinomonas foliarum, Oceanospirillaceae

AY539835, Marinomonas pontica, Oceanospirillaceae

EU188442, Marinomonas alcarazii, Oceanospirillaceae

EU188443, Marinomonas rhizomae, Oceanospirillaceae

EU188447, Marinomonas aquiplantarum, Oceanospirillaceae

EU188445, Marinomonas posidonica, Oceanospirillaceae

DQ011526, Marinomonas dokdonensis, Oceanospirillaceae

AB467281, Marinomonas arenicola, Oceanospirillaceae

EU188441, Marinomonas pollencensis, Oceanospirillaceae

DQ011528, Marinomonas communis, type sp., Oceanospirillaceae

AB242868, Marinomonas ostreistagni, Oceanospirillaceae

AJ843077, Marinomonas aquimarina, Oceanospirillaceae

X67025, Marinomonas vaga, Oceanospirillaceae

GU929940, Marinomonas brasilensis, Oceanospirillaceae

AF063027, Marinomonas mediterranea, Oceanospirillaceae

EU188448, Marinomonas balearica, Oceanospirillaceae

AM747817, Oceaniserpentilla haliotis, Oceanospirillaceae

AM117931, Spongiispira norvegica, type sp., Unclassified Oceanospirillales

AY136131, Bermanella marisrubri, Oceanospirillaceae

AJ426420, Oleispira antarctica, type sp., Oceanospirillaceae

AB006767, Oceanobacter kriegii, type sp., Oceanospirillaceae

AB435649, Oleibacter marinus, type sp., Oceanospirillaceae

AJ431699, Thalassolituus oleivorans, type sp., Oceanospirillaceae

AB288092, Neptunomonas japonica, Oceanospirillaceae

AF053734, Neptunomonas naphthovorans, type sp., Oceanospirillaceae

FJ713802, Neptunomonas antarctica, Oceanospirillaceae

AB006760, Oceanospirillum beijerinckii, Oceanospirillaceae

AB006763, Oceanospirillum maris, Oceanospirillaceae

AB006764, Oceanospirillum multiglobuliferum, Oceanospirillaceae

AM156910, Amphritea atlantica, type sp., Oceanospirillaceae

AB330883, Amphritea balenae, Oceanospirillaceae

AB330881, Amphritea japonica, Oceanospirillaceae

AY136116, Neptuniibacter caesariensis, type sp., Oceanospirillaceae

GQ131677, Neptuniibacter halophilus, Oceanospirillaceae

U58339, Marinobacterium georgiense, type sp., Alteromonadaceae

AY563030, Marinobacterium halophilum, Alteromonadaceae

EU399548, Marinobacterium maritimum, Alteromonadaceae

AB021367, Marinobacterium stanieri, Alteromonadaceae

EU573966, Marinobacterium sediminicola, Alteromonadaceae

GU183820, Marinobacterium coralli, Alteromonadaceae

AB006765, Marinobacterium jannaschii, Alteromonadaceae

EF192391, Marinobacterium rhizophilum, Alteromonadaceae

AY567473, Nitrincola lacisaponensis, type sp., Oceanospirillaceae

DQ917760, Marinobacterium litorale, Alteromonadaceae

FJ230839, Marinobacterium lutimaris, Alteromonadaceae

EU573965, Marinobacterium nitratireducens, Alteromonadaceae

Y17112, Balneatrix alpica, type sp., Oceanospirillaceae

AJ295154, Oleiphilus messinensis, type sp., Oleiphilaceae

DQ060402, Marinobacter psychrophilus, Alteromonadaceae

FJ196022, Marinobacter antarcticus, Alteromonadaceae

AJ704395, Marinobacter maritimus, Alteromonadaceae

EF660754, Marinobacter goseongensis, Alteromonadaceae

AY147906, Marinobacter lipolyticus, Alteromonadaceae

AM503093, Marinobacter guineae, Alteromonadaceae

AY241552, Marinobacter adhaerens, Alteromonadaceae

AY517632, Marinobacter flavimaris, Alteromonadaceae

AY258110, Marinobacter algicola, Alteromonadaceae

EF028328, Marinobacter salsuginis, Alteromonadaceae

AJ609270, Marinobacter sediminum, Alteromonadaceae

AJ609271, Marinobacter bryozoorum, Alteromonadaceae

EF157832, Marinobacter segnicrescens, Alteromonadaceae

EU047505, Marinobacter lacisalsi, Alteromonadaceae

EF486354, Marinobacter salicampi, Alteromonadaceae

FJ984869, Marinobacter daqiaonensis, Alteromonadaceae

DQ414419, Marinobacter gudaonensis, Alteromonadaceae

AY180101, Marinobacter excellens, Alteromonadaceae

AF479689, Marinobacter litoralis, Alteromonadaceae

DQ235263, Marinobacter vinifirmus, Alteromonadaceae

AY517633, Marinobacter daepoensis, Alteromonadaceae

X67022, Marinobacter hydrocarbonoclasticus, type sp., Alteromonadaceae

FJ897726, Marinobacter oulmenensis, Alteromonadaceae

DQ325514, Marinobacter koreensis, Alteromonadaceae

EU496088, Marinobacter santoriniensis, Alteromonadaceae

DQ458821, Marinobacter pelagius, Alteromonadaceae

EU164778, Marinobacter szutsaonensis, Alteromonadaceae

EU293412, Marinobacter mobilis, Alteromonadaceae

EU293413, Marinobacter zhejiangensis, Alteromonadaceae

HQ203044, Marinobacter xestospongiae, Alteromonadaceae

AF288157, Marinobacter lutaoensis, Alteromonadaceae

DQ072719, Halospina denitrificans, type sp., Hahellaceae

DQ072718, Halovibrio denitrificans, Halomonadaceae

AB021383, Pseudomonas halophila, Pseudomonadaceae

DQ019934, Salicola marasensis, type sp., Unclassified Oceanospirillales

DQ129689, Salicola salis, Unclassified Oceanospirillales

Hahellaceae (4)

CP000155, Hahella chejuensis , type sp., Hahellaceae

AY676463, Hahella ganghwensis, Hahellaceae

EF495227, Hahella antarctica, Hahellaceae

AY130994, Zooshikella ganghwensis, type sp., Hahellaceae

AB196667, Endozoicomonas elysicola, type sp., Hahellaceae

FJ347758, Endozoicomonas montiporae, Hahellaceae

EU599216, Kistimonas asteriae, type sp., Hahellaceae

Pseudomonadaceae (149)

D84009, Pseudomonas azotoformans, Pseudomonadaceae

AJ936933, Pseudomonas simiae, Pseudomonadaceae

AF374472, Pseudomonas costantinii, Pseudomonadaceae

AJ581999, Pseudomonas lurida, Pseudomonadaceae

AJ492829, Pseudomonas poae, Pseudomonadaceae

AJ492831, Pseudomonas trivialis, Pseudomonadaceae

AF405328, Pseudomonas extremorientalis, Pseudomonadaceae

AF405328, Pseudomonas extremorientalis, Pseudomonadaceae

AF255336, Pseudomonas tolaasii, Pseudomonadaceae

AY091527, Pseudomonas palleroniana, Pseudomonadaceae

AY091528, Pseudomonas salomonii, Pseudomonadaceae

AJ492830, Pseudomonas cedrina subsp. fulgida, Pseudomonadaceae

AF064461, Pseudomonas cedrina subsp. cedrina, Pseudomonadaceae

AF064457, Pseudomonas orientalis, Pseudomonadaceae

D84013, Pseudomonas fluorescens, Pseudomonadaceae

AJ537601, Pseudomonas antarctica, Pseudomonadaceae

AJ537602, Pseudomonas meridiana, Pseudomonadaceae

AJ583501, Pseudomonas extremaustralis, Pseudomonadaceae

AF268029, Pseudomonas grimontii, Pseudomonadaceae

AF268968, Pseudomonas brenneri, Pseudomonadaceae

AJ537603, Pseudomonas proteolytica, Pseudomonadaceae

AF074384, Pseudomonas gessardii, Pseudomonadaceae

AF064459, Pseudomonas rhodesiae, Pseudomonadaceae

D84017, Pseudomonas mucidolens, Pseudomonadaceae

D84025, Pseudomonas synxantha, Pseudomonadaceae

HQ223108, Thermoleophilum minutum, Thermoleophilaceae

AF057645, Pseudomonas libanensis, Pseudomonadaceae

Z76663, Pseudomonas marginalis, Pseudomonadaceae

AY787208, Pseudomonas panacis, Pseudomonadaceae

AF064460, Pseudomonas veronii, Pseudomonadaceae

Z76654, Pseudomonas amygdali, Pseudomonadaceae

AY180972, Pseudomonas viridiflava, Pseudomonadaceae

AB021378, Pseudomonas ficuserectae, Pseudomonadaceae

DQ318866, Pseudomonas syringae , Pseudomonadaceae

AJ492828, Pseudomonas congelans, Pseudomonadaceae

AJ492827, Pseudomonas cannabina, Pseudomonadaceae

AJ278812, Pseudomonas protegens, Pseudomonadaceae

FM208264, Pseudomonas saponiphila, Pseudomonadaceae

Z76658, Pseudomonas cichorii, Pseudomonadaceae

D84010, Pseudomonas caricapapayae, Pseudomonadaceae

AB021402, Pseudomonas savastanoi, Pseudomonadaceae

AJ492826, Pseudomonas tremae, Pseudomonadaceae

AJ249382, Pseudomonas frederiksbergensis, Pseudomonadaceae

AF058286, Pseudomonas mandelii, Pseudomonadaceae

D84012, Pseudomonas corrugata, Pseudomonadaceae

AJ292426, Pseudomonas kilonensis, Pseudomonadaceae

AF100321, Pseudomonas brassicacearum subsp. brassicacearum, Pseudomonadaceae

EU391388, Pseudomonas brassicacearum subsp. neoaurantiaca, Pseudomonadaceae

AF386080, Pseudomonas mediterranea, Pseudomonadaceae

AF100323, Pseudomonas thivervalensis, Pseudomonadaceae

AY035996, Pseudomonas lini, Pseudomonadaceae

AF074383, Pseudomonas migulae, Pseudomonadaceae

FN645213, Pseudomonas arsenicoxydans, Pseudomonadaceae

AF094733, Pseudomonas fragi, Pseudomonadaceae

AB041885, Pseudomonas psychrophila, Pseudomonadaceae

GU936597, Pseudomonas deceptionensis, Pseudomonadaceae

D84027, Pseudomonas taetrolens, Pseudomonadaceae

AB021395, Pseudomonas lundensis, Pseudomonadaceae

FJ168539, Pseudomonas chlororaphis subsp. piscium, Pseudomonadaceae

Z76673, Pseudomonas chlororaphis subsp. chlororaphis, Pseudomonadaceae

AY509898, Pseudomonas chlororaphis subsp. aureofaciens, Pseudomonadaceae

DQ682655, Pseudomonas chlororaphis subsp. aurantiaca, Pseudomonadaceae

AF468450, Pseudomonas umsongensis, Pseudomonadaceae

AM293566, Pseudomonas moorei, Pseudomonadaceae

AJ011507, Pseudomonas vancouverensis, Pseudomonadaceae

AM293567, Pseudomonas mohnii, Pseudomonadaceae

AF068259, Pseudomonas jessenii, Pseudomonadaceae

AM293565, Pseudomonas reinekei, Pseudomonadaceae

FM201274, Pseudomonas baetica, Pseudomonadaceae

Z76652, Pseudomonas agarici, Pseudomonadaceae

AY970952, Pseudomonas moraviensis, Pseudomonadaceae

AF468452, Pseudomonas koreensis, Pseudomonadaceae

Y11150, Pseudomonas graminis, Pseudomonadaceae

AY364537, Pseudomonas lutea, Pseudomonadaceae

AJ011504, Pseudomonas abietaniphila, Pseudomonadaceae

AY152673, Pseudomonas rhizosphaerae, Pseudomonadaceae

AB126621, Pseudomonas japonica, Pseudomonadaceae

AY970951, Pseudomonas vranovensis, Pseudomonadaceae

AB021397, Pseudomonas asplenii, Pseudomonadaceae

FJ483519, Pseudomonas fuscovaginae, Pseudomonadaceae

AF064458, Pseudomonas monteilii, Pseudomonadaceae

AB009457, Pseudomonas plecoglossicida, Pseudomonadaceae

EU103629, Pseudomonas taiwanensis, Pseudomonadaceae

AY907566, Pseudomonas entomophila, Pseudomonadaceae

AF072688, Pseudomonas mosselii, Pseudomonadaceae

D84004, Pseudomonas oryzihabitans, Pseudomonadaceae

D84020, Pseudomonas putida, Pseudomonadaceae

AB060137, Pseudomonas cremoricolorata, Pseudomonadaceae

AB046999, Pseudomonas parafulva, Pseudomonadaceae

AB046996, Pseudomonas fulva, Pseudomonadaceae

AB021380, Pseudomonas pertucinogena, Pseudomonadaceae

DQ088664, Pseudomonas xiamenensis, Pseudomonadaceae

GQ161991, Pseudomonas bauzanensis, Pseudomonadaceae

FN908483, Pseudomonas litoralis, Pseudomonadaceae

EU888911, Pseudomonas pelagia, Pseudomonadaceae

EU143352, Pseudomonas sabulinigri, Pseudomonadaceae

EU286805, Pseudomonas xinjiangensis, Pseudomonadaceae

AB125366, Pseudomonas pachastrellae, Pseudomonadaceae

EU046271, Pseudomonas duriflava, Pseudomonadaceae

D84002, Pseudomonas luteola, Pseudomonadaceae

AB175652, Azomonas agilis, type sp., Pseudomonadaceae

FM208263, Pseudomonas benzenivorans, Pseudomonadaceae

AB175655, Azotobacter armeniacus, Pseudomonadaceae

AB175656, Azotobacter salinestris, Pseudomonadaceae

AB175657, Azotobacter vinelandii, Pseudomonadaceae

AJ308318, Azorhizophilus paspali, type sp., Pseudomonadaceae

AB175651, Azotobacter nigricans subsp. nigricans, Pseudomonadaceae

AB189452, Pseudomonas azotifigens, Pseudomonadaceae

AF302795, Pseudomonas indica, Pseudomonadaceae

U26418, Pseudomonas balearica, Pseudomonadaceae

AJ311980, Pseudomonas thermotolerans, Pseudomonadaceae

AJ308319, Azotobacter beijerinckii, Pseudomonadaceae

AB175653, Azotobacter chroococcum, type sp., Pseudomonadaceae

Z76659, Pseudomonas citronellolis, Pseudomonadaceae

DQ339153, Pseudomonas delhiensis, Pseudomonadaceae

AF468448, Pseudomonas jinjuensis, Pseudomonadaceae

AF039489, Pseudomonas knackmussii, Pseudomonadaceae

AM088473, Pseudomonas nitroreducens, Pseudomonadaceae

EF424401, Pseudomonas panipatensis, Pseudomonadaceae

X06684, Pseudomonas aeruginosa, type sp., Pseudomonadaceae

Z76668, Pseudomonas resinovorans, Pseudomonadaceae

AY953147, Pseudomonas otitidis, Pseudomonadaceae

D84018, Pseudomonas oleovorans subsp. oleovorans, Pseudomonadaceae

AJ575816, Pseudomonas psychrotolerans, Pseudomonadaceae

AF094748, Pseudomonas stutzeri, Pseudomonadaceae

AB176954, Pseudomonas xanthomarina, Pseudomonadaceae

DQ868767, Pseudomonas tuomuerensis, Pseudomonadaceae

GU269546, Serpens flexibilis, type sp., Pseudomonadaceae

EU620679, Pseudomonas caeni, Pseudomonadaceae

DQ842018, Pseudomonas oleovorans subsp. lubricantis, Pseudomonadaceae

Z76666, Pseudomonas pseudoalcaligenes, Pseudomonadaceae

AB030583, Pseudomonas alcaliphila, Pseudomonadaceae

AB453701, Pseudomonas toyotomiensis, Pseudomonadaceae

D84016, Pseudomonas mendocina, Pseudomonadaceae

D84006, Pseudomonas alcaligenes, Pseudomonadaceae

AY691188, Pseudomonas argentinensis, Pseudomonadaceae

D84023, Pseudomonas straminea, Pseudomonadaceae

FJ422810, Pseudomonas seleniipraecipitans, Pseudomonadaceae

U01916, Pseudomonas flavescens, Pseudomonadaceae

X99540, Pseudomonas anguilliseptica, Pseudomonadaceae

AM114534, Pseudomonas peli, Pseudomonadaceae

AM491810, Pseudomonas guineae, Pseudomonadaceae

EU791281, Pseudomonas cuatrocienegasensis, Pseudomonadaceae

DQ339144, Pseudomonas pohangensis, Pseudomonadaceae

FJ424813, Pseudomonas taeanensis, Pseudomonadaceae

FN429930, Pseudomonas composti, Pseudomonadaceae

AM114527, Pseudomonas borbori, Pseudomonadaceae

AB301071, Pseudomonas marincola, Pseudomonadaceae

AY770691, Pseudomonas segetis, Pseudomonadaceae

AB175654, Azomonas macrocytogenes, Pseudomonadaceae

AAOA01000004, Congregibacter litoralis, type sp., Unclassified Gammaproteobacteria

EU161717, Haliea rubra, Alteromonadaceae

FN398053, Haliea mediterranea, Alteromonadaceae

AM691086, Chromatocurvus halotolerans, type sp., Unclassified Gammaproteobacteria

AY576769, Haliea salexigens, type sp., Alteromonadaceae

AB602427, Halioglobus japonicus, type sp., Unclassified Gammaproteobacteria

AB602430, Halioglobus pacificus, Unclassified Gammaproteobacteria

FJ889619, Zhongshania antarctica, type sp., Unclassified Gammaproteobacteria

HQ199599, Spongiibacter borealis, Unclassified Gammaproteobacteria

FJ889678, Zhongshania guokunii, Unclassified Gammaproteobacteria

EF988653, Spongiibacter tropicus, Unclassified Gammaproteobacteria

AM117932, Spongiibacter marinus, type sp., Unclassified Gammaproteobacteria

AY771747, Dasania marina, type sp., Unclassified Pseudomonadales

AF055269, Saccharophagus degradans, type sp., Alteromonadaceae

AB467279, Umboniibacter marinipuniceus , type sp., Unclassified Gammaproteobacteria

FJ347760, Pseudoteredinibacter isoporae, type sp., Unclassified Alteromonadales

AB626730, Maricurvus nonylphenolicus, type sp., Unclassified Alteromonadales

AY576771, Eionea nigra, type sp., Unclassified Alteromonadales

DQ822530, Gilvimarinus chinensis, type sp., Unclassified Alteromonadales

AY028398, Teredinibacter turnerae, type sp., Unclassified Alteromonadales

EF468719, Porticoccus litoralis, Unclassified Gammaproteobacteria

AJ289164, Cellvibrio fibrivorans, Pseudomonadaceae

AJ493583, Cellvibrio ostraviensis, Pseudomonadaceae

AF448514, Cellvibrio fulvus, Pseudomonadaceae

AF448513, Cellvibrio vulgaris, Pseudomonadaceae

AF448515, Cellvibrio mixtus subsp. mixtus, type sp., Pseudomonadaceae

AF452103, Cellvibrio japonicus, Pseudomonadaceae

AJ289162, Cellvibrio gandavensis, Pseudomonadaceae

AY839870, Marinimicrobium agarilyticum, Alteromonadaceae

EU874388, Marinimicrobium locisalis, Alteromonadaceae

AY839869, Marinimicrobium koreense, type sp., Alteromonadaceae

AB158515, Microbulbifer agarilyticus, Alteromonadaceae

AF500006, Microbulbifer elongatus, Alteromonadaceae

GQ262813, Microbulbifer yueqingensis, Alteromonadaceae

AF479688, Microbulbifer salipaludis, Alteromonadaceae

U58338, Microbulbifer hydrolyticus, type sp., Alteromonadaceae

EF486352, Microbulbifer celer, Alteromonadaceae

AB500894, Microbulbifer chitinilyticus, Alteromonadaceae

EF674853, Microbulbifer halophilus, Alteromonadaceae

AB124836, Microbulbifer thermotolerans, Alteromonadaceae

AB266054, Microbulbifer epialgicus, Alteromonadaceae

AB167354, Microbulbifer variabilis, Alteromonadaceae

AY377986, Microbulbifer maritimus, Alteromonadaceae

EU365694, Microbulbifer donghaiensis, Alteromonadaceae

GQ262812, Microbulbifer marinus, Alteromonadaceae

AB500893, Microbulbifer okinawensis, Alteromonadaceae

EF617350, Simiduia agarivorans, type sp., Unclassified Gammaproteobacteria

GQ872422, Simiduia areninigrae, Unclassified Gammaproteobacteria

Alcanivoracaceae (7)

Y12579, Alcanivorax borkumensis, type sp., Alcanivoracaceae

AJ001150, Alcanivorax jadensis, Alcanivoracaceae

EU438901, Alcanivorax hongdengensis, Alcanivoracaceae

AF328762, Alcanivorax venustensis, Alcanivoracaceae

AY686709, Alcanivorax balearicus, Alcanivoracaceae

AY683537, Alcanivorax dieselolei, Alcanivoracaceae

DQ659451, Alcanivorax pacificus, Alcanivoracaceae

Francisellaceae (8)

EU683030, Francisella noatunensis subsp. orientalis, Francisellaceae

DQ295795, Francisella noatunensis subsp. noatunensis, Francisellaceae

JF290376, Francisella halioticida, Francisellaceae

AY928394, Francisella philomiragia, Francisellaceae

CP000915, Francisella tularensis subsp. mediasiatica, Francisellaceae

Z21931, Francisella tularensis subsp. tularensis, type sp., Francisellaceae

AY928396, Francisella tularensis subsp. novicida, Francisellaceae

FN252413, Francisella hispaniensis, Francisellaceae

M21292, Wolbachia persica, Anaplasmataceae

AY102612, Caedibacter taeniospiralis, type sp., Unclassified Thiotrichales

AB176554, Fangia hongkongensis, type sp., Unclassified Thiotrichales

U36941, Piscirickettsia salmonis, type sp., Piscirickettsiaceae

AB505051, Kangiella japonica, Alcanivoracaceae

GU339304, Kangiella spongicola, Alcanivoracaceae

HQ340606, Kangiella geojedonensis, Alcanivoracaceae

AY520560, Kangiella koreensis, type sp., Alcanivoracaceae

AY520561, Kangiella aquimarina, Alcanivoracaceae

AB500095, Marinicella litoralis, type sp., Unclassified Gammaproteobacteria

AB500096, Arenicella xantha, type sp., Unclassified Gammaproteobacteria

Legionellaceae (52)

Z32637, Legionella dumoffii, Legionellaceae

Z32639, Legionella gormanii, Legionellaceae

Z49720, Legionella cherrii, Legionellaceae

HQ398202, Legionella steelei, Legionellaceae

Z49725, Legionella gratiana, Legionellaceae

Z49738, Legionella wadsworthii, Legionellaceae

Z32635, Legionella anisa, Legionellaceae

Z49731, Legionella parisiensis, Legionellaceae

Z49737, Legionella steigerwaltii, Legionellaceae

Z32644, Legionella tucsonensis, Legionellaceae

Z49721, Legionella cincinnatiensis, Legionellaceae

Z49734, Legionella sainthelensi, Legionellaceae

AY444740, Legionella longbeachae, Legionellaceae

X97364, Legionella lytica, Legionellaceae

X97359, Legionella rowbothamii, Legionellaceae

X97366, Legionella drancourtii, Legionellaceae

Z49732, Legionella quateirensis, Legionellaceae

Z49736, Legionella shakespearei, Legionellaceae

Z49729, Legionella moravica, Legionellaceae

Z49739, Legionella worsleiensis, Legionellaceae

X97363, Legionella fallonii, Legionellaceae

HQ287902, Legionella pneumophila subsp. fraseri, Legionellaceae

AF122885, Legionella pneumophila subsp. pascullei, Legionellaceae

AE017354, Legionella pneumophila subsp. pneumophila, type sp., Legionellaceae

AF122886, Legionella waltersii, Legionellaceae

AM747393, Legionella dresdenensis, Legionellaceae

AF424887, Legionella busanensis, Legionellaceae

AF122883, Legionella gresilensis, Legionellaceae

AF122884, Legionella beliardensis, Legionellaceae

AF227161, Legionella maceachernii, Legionellaceae

AF227162, Legionella micdadei, Legionellaceae

Z49727, Legionella lansingensis, Legionellaceae

Z32643, Legionella rubrilucens, Legionellaceae

DQ667196, Legionella taurinensis, Legionellaceae

Z32638, Legionella erythra, Legionellaceae

Z49723, Legionella geestiana, Legionellaceae

Z49733, Legionella quinlivanii, Legionellaceae

AB233209, Legionella impletisoli, Legionellaceae

AB233210, Legionella yabuuchiae, Legionellaceae

EU701006, Legionella nagasakiensis, Legionellaceae

Z32642, Legionella oakridgensis, Legionellaceae

Z32640, Legionella israelensis, Legionellaceae

Z49730, Legionella londiniensis, Legionellaceae

Z49716, Legionella adelaidensis, Legionellaceae

Z49717, Legionella birminghamensis, Legionellaceae

Z49726, Legionella jamestowniensis, Legionellaceae

Z32667, Legionella jordanis, Legionellaceae

Z49722, Legionella fairfieldensis, Legionellaceae

Z49728, Legionella nautarum, Legionellaceae

Z32636, Legionella brunensis, Legionellaceae

X97355, Legionella drozanskii, Legionellaceae

X73395, Legionella feeleii, Legionellaceae

AY359282, Aquicella lusitana, type sp., Coxiellaceae

AY359283, Aquicella siphonis, Coxiellaceae

GQ857549, Diplorickettsia massiliensis, type sp., Coxiellaceae

Thiotrichaceae (9)

GU269554, Thiothrix fructosivorans, Thiotrichaceae

EU642573, Thiothrix caldifontis, Thiotrichaceae

EU642572, Thiothrix lacustris, Thiotrichaceae

L79961, Thiothrix unzii, Thiotrichaceae

L40993, Thiothrix nivea, type sp., Thiotrichaceae

AB042545, Thiothrix flexilis, Thiotrichaceae

AF127020, Thiothrix defluvii, Thiotrichaceae

AB042532, Thiothrix disciformis, Thiotrichaceae

AB042819, Thiothrix eikelboomii, Thiotrichaceae

EU672873, Methylogaea oryzae, type sp., Methylococcaceae

Methylococcaceae (4)

U89298, Methylocaldum gracile, Methylococcaceae

U89300, Methylocaldum szegediense, type sp., Methylococcaceae

U89297, Methylocaldum tepidum, Methylococcaceae

AJ563935, Methylococcus capsulatus, type sp., Methylococcaceae

Betaproteobacteria (491)

Burkholderiales (348)

Comamonadaceae (92)

Y18616, Acidovorax defluvii, Comamonadaceae

HM027578, Acidovorax radicis, Comamonadaceae

AF078764, Acidovorax delafieldii, Comamonadaceae

DQ327663, Verminephrobacter eiseniae, type sp., Comamonadaceae

FJ599672, Acidovorax soli, Comamonadaceae

AM084006, Acidovorax caeni, Comamonadaceae

AF078765, Acidovorax facilis, type sp., Comamonadaceae

AF078766, Acidovorax temperans, Comamonadaceae

AB064317, Diaphorobacter nitroreducens, type sp., Comamonadaceae

EU342381, Diaphorobacter oryzae, Comamonadaceae

AJ418042, Alicycliphilus denitrificans, type sp., Comamonadaceae

AJ007013, Acidovorax anthurii, Comamonadaceae

AJ431731, Acidovorax valerianellae, Comamonadaceae

AB074527, Giesbergeria anulus, Comamonadaceae

AY780907, Giesbergeria kuznetsovii, Comamonadaceae

AY780905, Giesbergeria voronezhensis, type sp., Comamonadaceae

AB074522, Giesbergeria giesbergeri, Comamonadaceae

AF078754, Giesbergeria sinuosa, Comamonadaceae

EF469609, Pseudacidovorax intermedius, type sp., Comamonadaceae

AF137505, Acidovorax avenae, Comamonadaceae

AF137504, Acidovorax cattleyae, Comamonadaceae

AF137506, Acidovorax citrulli, Comamonadaceae

DQ360414, Acidovorax oryzae, Comamonadaceae

AJ420325, Acidovorax konjaci, Comamonadaceae

AB187586, Comamonas granuli, Comamonadaceae

AF078753, Hylemonella gracilis, type sp., Comamonadaceae

AJ420330, Xylophilus ampelinus, type sp., Unclassified Burkholderiales

AB164432, Comamonas badia, Comamonadaceae

GQ245981, Comamonas zonglianii, Comamonadaceae

AF078772, Comamonas terrigena, type sp., Comamonadaceae

AJ430344, Comamonas aquatica, Comamonadaceae

AF233877, Comamonas denitrificans, Comamonadaceae

AJ251577, Comamonas nitrativorans, Comamonadaceae

AJ430347, Comamonas kerstersii, Comamonadaceae

DQ453128, Comamonas odontotermitis, Comamonadaceae

AF275377, Comamonas koreensis, Comamonadaceae

DQ322069, Comamonas thiooxydans, Comamonadaceae

M11224, Comamonas testosteroni, Comamonadaceae

EF015884, Comamonas composti, Comamonadaceae

EF015884, Comamonas composti, Comamonadaceae

EU888308, Delftia lacustris, Comamonadaceae

AB075017, Delftia tsuruhatensis, Comamonadaceae

AB021417, Delftia acidovorans, type sp., Comamonadaceae

EU346912, Brachymonas chironomi, Comamonadaceae

D14320, Brachymonas denitrificans, Comamonadaceae

AB089485, Lampropedia hyalina, type sp., Comamonadaceae

AF285414, Xenophilus azovorans, type sp., Comamonadaceae

EF660342, Xenophilus aerolatus, Comamonadaceae

AF078755, Simplicispira psychrophila, Comamonadaceae

DQ372987, Simplicispira limi, Comamonadaceae

Y18618, Simplicispira metamorpha, type sp., Comamonadaceae

GU233447, Rhodoferax antarcticus, Comamonadaceae

D16211, Rhodoferax fermentans, type sp., Comamonadaceae

CP000267, Albidiferax ferrireducens, type sp., Comamonadaceae

EU825700, Pseudorhodoferax soli, type sp., Comamonadaceae

AJ606333, Pseudorhodoferax caeni, Comamonadaceae

FM178226, Limnohabitans australis, Comamonadaceae

AJ938026, Limnohabitans curvus, type sp., Comamonadaceae

FM165536, Limnohabitans parvus, Comamonadaceae

FM165535, Limnohabitans planktonicus, Comamonadaceae

DQ094183, Polaromonas hydrogenivorans, Comamonadaceae

AY166684, Polaromonas naphthalenivorans, Comamonadaceae

AM039830, Polaromonas aquatica, Comamonadaceae

U14585, Polaromonas vacuolata, type sp., Comamonadaceae

EU030285, Polaromonas jejuensis, Comamonadaceae

AB120963, Curvibacter fontanus, Comamonadaceae

AB109889, Curvibacter gracilis, type sp., Comamonadaceae

AB021390, Curvibacter lanceolatus, Comamonadaceae

AF078756, Curvibacter delicatus, Comamonadaceae

AB300597, Variovorax boronicumulans, Comamonadaceae

AJ420329, Variovorax paradoxus, type sp., Comamonadaceae

AB245358, Variovorax ginsengisoli, Comamonadaceae

DQ349098, Caenimonas koreensis, type sp., Comamonadaceae

EU518930, Ottowia pentelensis, Comamonadaceae

AJ537466, Ottowia thiooxydans, type sp., Comamonadaceae

AF439400, Ramlibacter henchirensis, Comamonadaceae

AF144383, Ramlibacter tataouinensis, type sp., Comamonadaceae

DQ178978, Variovorax dokdonensis, Comamonadaceae

HQ385753, Variovorax defluvii, Comamonadaceae

DQ432053, Variovorax soli, Comamonadaceae

DQ372983, Hydrogenophaga caeni, Comamonadaceae

AJ585992, Hydrogenophaga atypica, Comamonadaceae

AJ585993, Hydrogenophaga defluvii, Comamonadaceae

AF078769, Hydrogenophaga palleronii, Comamonadaceae

AF078768, Hydrogenophaga taeniospiralis, Comamonadaceae

AF019037, Hydrogenophaga intermedia, Comamonadaceae

EF532793, Hydrogenophaga bisanensis, Comamonadaceae

AF078770, Hydrogenophaga pseudoflava, Comamonadaceae

AF078771, Hydrogenophaga flava, type sp., Comamonadaceae

AJ627188, Malikia granosa, type sp., Comamonadaceae

AB077038, Malikia spinosa, Comamonadaceae

AB077037, Macromonas bipunctata, Comamonadaceae

DQ295805, Tepidicella xavieri, type sp., Comamonadaceae

AM042693, Tepidimonas thermarum, Unclassified Burkholderiales

AY845054, Tepidimonas taiwanensis, Unclassified Burkholderiales

AF177943, Tepidimonas ignava, type sp., Unclassified Burkholderiales

AY324139, Tepidimonas aquatica, Unclassified Burkholderiales

AB008801, Caldimonas manganoxidans, type sp., Comamonadaceae

AY845052, Caldimonas taiwanensis, Comamonadaceae

AM501435, Pelomonas aquatica, Comamonadaceae

AM501439, Pelomonas puraquae, Comamonadaceae

AB021407, Pelomonas saccharophila, type sp., Comamonadaceae

AY136099, Kinneretia asaccharophila, Comamonadaceae

AB006851, Mitsuaria chitosanitabida, type sp., Unclassified Burkholderiales

AY515390, Paucibacter toxinivorans, type sp., Unclassified Burkholderiales

AB003623, Roseateles depolymerans, type sp., Comamonadaceae

AM501445, Roseateles terrae, Comamonadaceae

AM501446, Roseateles aquatilis, Comamonadaceae

DQ664238, Inhella inkyongensis, type sp., Unclassified Burkholderiales

HM013811, Inhella fonticola, Unclassified Burkholderiales

HM037993, Vitreoscilla filiformis, Neisseriaceae

L33975, Leptothrix discophora, Unclassified Burkholderiales

GU591795, Sphaerotilus hippei, Unclassified Burkholderiales

EU636006, Sphaerotilus montanus, Unclassified Burkholderiales

FR749902, Sphaerotilus natans, type sp., Unclassified Burkholderiales

FJ871054, Sphaerotilus natans subsp. sulfidivorans, Unclassified Burkholderiales

X97071, Leptothrix mobilis, Unclassified Burkholderiales

DQ656489, Aquincola tertiaricarbonis, type sp., Unclassified Burkholderiales

AB188124, Azohydromonas australica, Alcaligenaceae

EU542576, Ideonella azotifigens, Unclassified Burkholderiales

X72724, Ideonella dechloratans, type sp., Unclassified Burkholderiales

AJ888903, Rubrivivax benzoatilyticus, Unclassified Burkholderiales

D16213, Rubrivivax gelatinosus, type sp., Unclassified Burkholderiales

AY455809, Thiomonas intermedia, type sp., Unclassified Burkholderiales

AY455808, Thiomonas perometabolis, Unclassified Burkholderiales

AM492684, Thiomonas arsenitoxydans, Unclassified Burkholderiales

DQ092334, Thiomonas bhubaneswarensis, Unclassified Burkholderiales

GU233443, Thiomonas thermosulfata, Unclassified Burkholderiales

AB245481, Thiomonas delicata, Unclassified Burkholderiales

EU625663, Thiomonas islandica, Unclassified Burkholderiales

AM774413, Rivibacter subsaxonicus, type sp., Unclassified Burkholderiales

AB245356, Rhizobacter fulvus, Pseudomonadaceae

AB297965, Rhizobacter dauci, type sp., Pseudomonadaceae

DQ664244, Piscinibacter aquaticus, type sp., Unclassified Burkholderiales

AF176594, Methylibium petroleiphilum, type sp., Unclassified Burkholderiales

AF035050, Aquabacterium citratiphilum, Unclassified Burkholderiales

AF035054, Aquabacterium commune, type sp., Unclassified Burkholderiales

GU319965, Aquabacterium limnoticum, Unclassified Burkholderiales

EF626687, Aquabacterium fontiphilum, Unclassified Burkholderiales

AF035052, Aquabacterium parvum, Unclassified Burkholderiales

AB188125, Azohydromonas lata, type sp., Alcaligenaceae

DQ417336, Schlegelella aquatica, Comamonadaceae

AY152824, Schlegelella thermodepolymerans, type sp., Comamonadaceae

AB366174, Limnobacter litoralis, Burkholderiaceae

AJ289885, Limnobacter thiooxidans, type sp., Burkholderiaceae

Burkholderiaceae (70)

AB495123, Burkholderia heleia, Burkholderiaceae

AY965240, Burkholderia silvatlantica, Burkholderiaceae

AY752958, Burkholderia mimosarum, Burkholderiaceae

DQ514537, Burkholderia ferrariae, Burkholderiaceae

AY773189, Burkholderia nodosa, Burkholderiaceae

AB561874, Burkholderia bannensis, Burkholderiaceae

AB561874, Burkholderia bannensis, Burkholderiaceae

AJ420332, Burkholderia tropica, Burkholderiaceae

AY221956, Burkholderia unamae, Burkholderiaceae

AB488693, Burkholderia oxyphila, Burkholderiaceae

AF263278, Burkholderia sacchari, Burkholderiaceae

AB513180, Burkholderia acidipaludis, Burkholderiaceae

AB024310, Burkholderia kururiensis, Burkholderiaceae

AJ302311, Burkholderia tuberum, Burkholderiaceae

AY435213, Burkholderia phenoliruptrix, Burkholderiaceae

AJ302312, Burkholderia phymatum, Burkholderiaceae

AY773186, Burkholderia sabiae, Burkholderiaceae

Y17009, Burkholderia caribensis, Burkholderiaceae

AY040365, Burkholderia hospita, Burkholderiaceae

AB201285, Burkholderia terrae, Burkholderiaceae

AM489502, Burkholderia megapolitana, Burkholderiaceae

AM489501, Burkholderia bryophila, Burkholderiaceae

AF215704, Burkholderia caledonica, Burkholderiaceae

AB201286, Burkholderia ginsengisoli, Burkholderiaceae

U96939, Burkholderia graminis, Burkholderiaceae

AY040362, Burkholderia terricola, Burkholderiaceae

U86373, Burkholderia xenovorans, Burkholderiaceae

AY497470, Burkholderia phytofirmans, Burkholderiaceae

EU035613, Burkholderia sediminicola, Burkholderiaceae

AF215705, Burkholderia fungorum, Burkholderiaceae

U96936, Burkholderia phenazinium, Burkholderiaceae

AF061872, Burkholderia sartisoli, Burkholderiaceae

U96935, Burkholderia glathei, Burkholderiaceae

HM802212, Burkholderia zhejiangensis, Burkholderiaceae

AF512827, Burkholderia sordidicola, Burkholderiaceae

AB021423, Burkholderia caryophylli, Burkholderiaceae

DQ465451, Burkholderia soli, Burkholderiaceae

EU024168, Burkholderia gladioli, Burkholderiaceae

U96933, Burkholderia plantarii, Burkholderiaceae

U96931, Burkholderia glumae, Burkholderiaceae

Y18703, Burkholderia multivorans, Burkholderiaceae

AB030584, Burkholderia ubonensis, Burkholderiaceae

AF097534, Burkholderia vietnamiensis, Burkholderiaceae

AF148556, Burkholderia cenocepacia, Burkholderiaceae

AM747628, Burkholderia latens, Burkholderiaceae

U96927, Burkholderia cepacia, type sp., Burkholderiaceae

AM747631, Burkholderia seminalis, Burkholderiaceae

AM747632, Burkholderia metallica, Burkholderiaceae

AM747630, Burkholderia arboris, Burkholderiaceae

CP000150, Burkholderia lata, Burkholderiaceae

GQ397111, Burkholderia contaminans, Burkholderiaceae

AF043302, Burkholderia ambifaria, Burkholderiaceae

AM747629, Burkholderia diffusa, Burkholderiaceae

U96930, Burkholderia pyrrocinia, Burkholderiaceae

AF097533, Burkholderia stabilis, Burkholderiaceae

DQ108388, Burkholderia oklahomensis, Burkholderiaceae

AF110188, Burkholderia mallei, Burkholderiaceae

DQ108392, Burkholderia pseudomallei, Burkholderiaceae

U91838, Burkholderia thailandensis, Burkholderiaceae

AM420302, Burkholderia endofungorum, Burkholderiaceae

AJ938142, Burkholderia rhizoxinica, Burkholderiaceae

AF139173, Pandoraea apista, type sp., Burkholderiaceae

Y09879, Pandoraea norimbergensis, Burkholderiaceae

AB510957, Pandoraea faecigallinarum, Burkholderiaceae

AB510956, Pandoraea vervacti, Burkholderiaceae

AY268170, Pandoraea pnomenusa, Burkholderiaceae

AB469785, Pandoraea oxalativorans, Burkholderiaceae

AF139176, Pandoraea sputorum, Burkholderiaceae

AF139175, Pandoraea pulmonicola, Burkholderiaceae

EF397578, Pandoraea thiooxydans, Burkholderiaceae

AEQP01000026, Lautropia mirabilis, type sp., Burkholderiaceae

Oxalobacteraceae (57)

EU808005, Massilia niastensis, Oxalobacteraceae

FN814307, Massilia consociata, Oxalobacteraceae

EF688526, Massilia aerilata, Oxalobacteraceae

FR773700, Massilia oculi, Oxalobacteraceae

AM231588, Massilia aurea, Oxalobacteraceae

EF546777, Massilia brevitalea, Oxalobacteraceae

FJ969486, Massilia jejuensis, Oxalobacteraceae

EU808006, Massilia niabensis, Oxalobacteraceae

AY679161, Massilia alkalitolerans, Oxalobacteraceae

AM774587, Massilia varians, Oxalobacteraceae

AM774589, Massilia haematophila, Oxalobacteraceae

FJ969487, Massilia suwonensis, Oxalobacteraceae

X65590, Telluria chitinolytica, Oxalobacteraceae

X65589, Telluria mixta, type sp., Oxalobacteraceae

U54470, Massilia timonae, type sp., Oxalobacteraceae

HM777013, Massilia flava, Oxalobacteraceae

AY965999, Massilia albidiflava, Oxalobacteraceae

AY966001, Massilia lutea, Oxalobacteraceae

AY376163, Duganella violaceinigra, Oxalobacteraceae

AY965998, Massilia dura, Oxalobacteraceae

AY966000, Massilia plicata, Oxalobacteraceae

D14256, Duganella zoogloeoides, type sp., Oxalobacteraceae

HM038005, Rugamonas rubra, type sp., Pseudomonadaceae

Y08845, Janthinobacterium agaricidamnosum, Oxalobacteraceae

Y08846, Janthinobacterium lividum, type sp., Oxalobacteraceae

AB074523, Aquaspirillum arcticum, Neisseriaceae

AM397630, Undibacterium pigrum, type sp., Oxalobacteraceae

AM397629, Undibacterium parvum, Oxalobacteraceae

GQ379228, Undibacterium oligocarboniphilum, Oxalobacteraceae

EU489741, Herminiimonas glaciei, Oxalobacteraceae

AM493906, Herminiimonas saxobsidens, Oxalobacteraceae

AY728038, Herminiimonas arsenicoxydans, Oxalobacteraceae

AM085762, Herminiimonas aquatilis, Oxalobacteraceae

AY676462, Herminiimonas fonticola, type sp., Oxalobacteraceae

AB469788, Oxalicibacterium faecigallinarum, Oxalobacteraceae

AY061962, Oxalicibacterium flavum, type sp., Oxalobacteraceae

AB469786, Oxalicibacterium horti, Oxalobacteraceae

AB008503, Oxalicibacterium solurbis, Oxalobacteraceae

AB021366, Herbaspirillum huttiense subsp. huttiense, Oxalobacteraceae

AB109890, Herbaspirillum huttiense subsp. putei, Oxalobacteraceae

FJ267649, Herbaspirillum aquaticum, Oxalobacteraceae

AB094401, Herbaspirillum chlorophenolicum, Oxalobacteraceae

AJ238358, Herbaspirillum frisingense, Oxalobacteraceae

AF137508, Herbaspirillum rubrisubalbicans, Oxalobacteraceae

Y10146, Herbaspirillum seropedicae, type sp., Oxalobacteraceae

DQ150563, Herbaspirillum hiltneri, Oxalobacteraceae

AF543312, Herbaspirillum lusitanum, Oxalobacteraceae

DQ188986, Herbaspirillum rhizosphaerae, Oxalobacteraceae

DQ188986, Herbaspirillum rhizosphaerae, Oxalobacteraceae

AB074524, Herbaspirillum autotrophicum, Oxalobacteraceae

AY281146, Collimonas arenae, Oxalobacteraceae

AY281137, Collimonas pratensis, Oxalobacteraceae

AJ310394, Collimonas fungivorans, type sp., Oxalobacteraceae

HQ830497, Herbaspirillum aurantiacum, Oxalobacteraceae

HQ830498, Herbaspirillum soli, Oxalobacteraceae

HQ830496, Herbaspirillum canariense, Oxalobacteraceae

U49757, Oxalobacter formigenes, type sp., Oxalobacteraceae

FR733700, Oxalobacter vibrioformis, Oxalobacteraceae

GU441679, Glaciimonas immobilis, type sp., Oxalobacteraceae

X92555, Paucimonas lemoignei, type sp., Burkholderiaceae

AF155567, Cupriavidus oxalaticus, Burkholderiaceae

AF300324, Cupriavidus taiwanensis, Burkholderiaceae

AB054961, Cupriavidus laharis, Burkholderiaceae

AB121221, Cupriavidus pinatubonensis, Burkholderiaceae

AF312022, Cupriavidus basilensis, Burkholderiaceae

AF312020, Cupriavidus campinensis, Burkholderiaceae

AF191737, Cupriavidus necator, type sp., Burkholderiaceae

AB104447, Wautersia numazuensis, Burkholderiaceae

AF500583, Cupriavidus respiraculi, Burkholderiaceae

D87999, Cupriavidus metallidurans, Burkholderiaceae

AF085226, Cupriavidus pauculus, Burkholderiaceae

AF076645, Cupriavidus gilardii, Burkholderiaceae

FN430567, Cupriavidus pampae, Burkholderiaceae

EF016361, Ralstonia solanacearum, Burkholderiaceae

AB021403, Ralstonia syzygii, Burkholderiaceae

AF488779, Ralstonia insidiosa, Burkholderiaceae

AJ270258, Ralstonia mannitolilytica, Burkholderiaceae

AY741342, Ralstonia pickettii, type sp., Burkholderiaceae

FM208180, Polynucleobacter acidiphobus, Burkholderiaceae

FM208181, Polynucleobacter difficilis, Burkholderiaceae

AM397067, Polynucleobacter necessarius subsp. necessarius, type sp., Burkholderiaceae

AJ879783, Polynucleobacter necessarius subsp. asymbioticus, Burkholderiaceae

AJ550672, Polynucleobacter cosmopolitanus, Burkholderiaceae

FM208182, Polynucleobacter rarus, Burkholderiaceae

Alcaligenaceae (45)

AM944734, Advenella incenata, type sp., Alcaligenaceae

AJ864470, Advenella kashmirensis, Alcaligenaceae

AY880023, Advenella mimigardefordensis, Alcaligenaceae

AJ251912, Oligella ureolytica, Alcaligenaceae

AF133538, Oligella urethralis, type sp., Alcaligenaceae

AJ277742, Brackiella oedipodis, type sp., Alcaligenaceae

AF067729, Taylorella asinigenitalis, Alcaligenaceae

X68645, Taylorella equigenitalis, type sp., Alcaligenaceae

Y11890, Pelistega europaea, type sp., Alcaligenaceae

FN556191, Candidimonas nitroreducens, type sp., Alcaligenaceae

FN556192, Candidimonas humi, Alcaligenaceae

DQ466075, Parapusillimonas granuli, type sp., Alcaligenaceae

GQ232740, Pusillimonas harenae, Alcaligenaceae

EF672088, Pusillimonas ginsengisoli, Alcaligenaceae

GQ241322, Pusillimonas soli, Alcaligenaceae

AY695828, Pusillimonas noertemannii, type sp., Alcaligenaceae

FJ793551, Paralcaligenes ureilyticus, type sp., Alcaligenaceae

AB166879, Castellaniella caeni, Alcaligenaceae

EU873313, Castellaniella ginsengisoli, Alcaligenaceae

U82826, Castellaniella denitrificans, Alcaligenaceae

AJ005447, Castellaniella defragrans, type sp., Alcaligenaceae

GQ241321, Castellaniella daejeonensis, Alcaligenaceae

AY296718, Alcaligenes faecalis subsp. phenolicus, Alcaligenaceae

D88008, Alcaligenes faecalis subsp. faecalis, type sp., Alcaligenaceae

AJ242986, Alcaligenes faecalis subsp. parafaecalis, Alcaligenaceae

FN391024, Paenalcaligenes hominis, type sp., Alcaligenaceae

AJ278451, Achromobacter denitrificans, Alcaligenaceae

AB010840, Achromobacter ruhlandii, Alcaligenaceae

Y14908, Achromobacter xylosoxidans subsp. xylosoxidans, type sp., Alcaligenaceae

AY170847, Achromobacter insolitus, Alcaligenaceae

AY170848, Achromobacter spanius, Alcaligenaceae

AB010841, Achromobacter piechaudii, Alcaligenaceae

EU150134, Achromobacter marplatensis, Alcaligenaceae

AF177666, Bordetella avium, Alcaligenaceae

AJ277798, Bordetella trematum, Alcaligenaceae

AF177667, Bordetella hinzii, Alcaligenaceae

U04948, Bordetella bronchiseptica, Alcaligenaceae

U04949, Bordetella parapertussis, Alcaligenaceae

U04820, Bordetella holmesii, Alcaligenaceae

U04950, Bordetella pertussis, type sp., Alcaligenaceae

AJ249861, Bordetella petrii, Alcaligenaceae

AY131213, Kerstersia gyiorum, type sp., Alcaligenaceae

EF100696, Pigmentiphaga daeguensis, Alcaligenaceae

AF282916, Pigmentiphaga kullae, type sp., Alcaligenaceae

EU583723, Pigmentiphaga litoralis, Alcaligenaceae

Sutterellaceae (5)

AJ566849, Sutterella stercoricanis, Sutterellaceae

GU585669, Sutterella wadsworthensis, type sp., Sutterellaceae

AB300989, Sutterella parvirubra, Sutterellaceae

AB491209, Parasutterella secunda, Sutterellaceae

AB370250, Parasutterella excrementihominis, type sp., Sutterellaceae

AB089482, Derxia gummosa, type sp., Alcaligenaceae

Neisseriaceae (71)

AB525415, Eikenella corrodens, type sp., Neisseriaceae

EF212897, Stenoxybacter acetivorans, Neisseriaceae

AF328147, Simonsiella muelleri, type sp., Neisseriaceae

AB087265, Bergeriella denitrificans, type sp., Neisseriaceae

AY551999, Kingella kingae, type sp., Neisseriaceae

ADBF01000003, Neisseria elongata subsp. glycolytica, Neisseriaceae

L06171, Neisseria elongata subsp. elongata, Neisseriaceae

M22516, Kingella denitrificans, Neisseriaceae

AJ239288, Neisseria animalis, Neisseriaceae

X07714, Neisseria gonorrhoeae, type sp., Neisseriaceae

AJ239289, Neisseria polysaccharea, Neisseriaceae

ACDY02000019, Neisseria cinerea, Neisseriaceae

GU233442, Neisseria iguanae, Neisseriaceae

AJ239286, Neisseria lactamica, Neisseriaceae

ACKO02000016, Neisseria sicca, Neisseriaceae

L06168, Neisseria flavescens, Neisseriaceae

AJ239291, Neisseria subflava, Neisseriaceae

AJ629192, Kingella potus, Neisseriaceae

AY560519, Neisseria bacilliformis, Neisseriaceae

L06164, Kingella oralis, Neisseriaceae

L06164, Kingella oralis, Neisseriaceae

FJ654664, Neisseria shayeganii, Neisseriaceae

AF328150, Conchiformibius kuhniae, Neisseriaceae

AB087261, Conchiformibius steedae, type sp., Neisseriaceae

AJ586614, Uruburuella suis, type sp., Neisseriaceae

L06170, Neisseria canis, Neisseriaceae

AF487709, Neisseria dentiae, Neisseriaceae

FJ654662, Neisseria wadsworthii, Neisseriaceae

DQ006843, Neisseria zoodegmatis, Neisseriaceae

AB087264, Alysiella crassa, Neisseriaceae

AF487710, Alysiella filiformis, type sp., Neisseriaceae

DQ006842, Neisseria animaloris, Neisseriaceae

L06174, Vitreoscilla stercoraria, Neisseriaceae

AM396358, Paludibacterium yongneupense, type sp., Neisseriaceae

EF626692, Pseudogulbenkiania subflava, type sp., Neisseriaceae

DQ415656, Gulbenkiania indica, Neisseriaceae

AM295491, Gulbenkiania mobilis, type sp., Neisseriaceae

EU109734, Chromobacterium aquaticum, Neisseriaceae

DQ785104, Chromobacterium haemolyticum, Neisseriaceae

AJ871127, Chromobacterium piscinae, Neisseriaceae

AJ871128, Chromobacterium pseudoviolaceum, Neisseriaceae

AE016825, Chromobacterium violaceum , type sp., Neisseriaceae

AY344056, Chromobacterium subtsugae, Neisseriaceae

EU594330, Aquitalea denitrificans, Neisseriaceae

DQ018117, Aquitalea magnusonii, type sp., Neisseriaceae

AB021385, Vogesella indigofera, type sp., Neisseriaceae

EU287927, Vogesella lacus, Neisseriaceae

EF626691, Vogesella perlucida, Neisseriaceae

GQ246809, Vogesella mureinivorans, Neisseriaceae

AB076000, Aquaspirillum putridiconchylium, Neisseriaceae

AB074518, Aquaspirillum serpens, type sp., Neisseriaceae

AF389085, Laribacter hongkongensis, type sp., Neisseriaceae

U89333, Microvirgula aerodenitrificans, type sp., Neisseriaceae

FJ593907, Chitinibacter alvei, Neisseriaceae

AY264287, Chitinibacter tainanensis, type sp., Neisseriaceae

AB681839, Iodobacter fluviatilis, type sp., Neisseriaceae

FJ347759, Deefgea chitinilytica, Neisseriaceae

AM397080, Deefgea rivuli, type sp., Neisseriaceae

EU682455, Chitinilyticum litopenaei, Neisseriaceae

DQ314581, Chitinilyticum aquatile, type sp., Neisseriaceae

Y17602, Formivibrio citricus, type sp., Neisseriaceae

AB453176, Chitiniphilus shinanonensis, type sp., Neisseriaceae

DQ836355, Andreprevotia chitinilytica, type sp., Neisseriaceae

EU287926, Andreprevotia lacus, Neisseriaceae

FJ669217, Jeongeupia naejangsanensis , Neisseriaceae

AB326110, Silvimonas iriomotensis, Neisseriaceae

AB194302, Silvimonas terrae, type sp., Neisseriaceae

AB326111, Silvimonas amylolytica, Neisseriaceae

DQ256728, Chitinimonas koreensis, Burkholderiaceae

AY323827, Chitinimonas taiwanensis, type sp., Burkholderiaceae

GU362099, Chitinivorax tropicus, type sp., Unclassified Betaproteobacteria

DQ280369, Leeia oryzae, type sp., Neisseriaceae

EU685841, Thiobacillus thiophilus, Hydrogenophilaceae

M79426, Thiobacillus thioparus, type sp., Hydrogenophilaceae

AJ243144, Thiobacillus denitrificans, Hydrogenophilaceae

U58019, Thiobacillus aquaesulis, Hydrogenophilaceae

Methylophilaceae (13)

AB193724, Methylophilus methylotrophus, type sp., Methylophilaceae

EU194887, Methylophilus rhizosphaerae, Methylophilaceae

FJ872109, Methylophilus luteus, Methylophilaceae

FJ872108, Methylophilus flavus, Methylophilaceae

AB193725, Methylophilus leisingeri, Methylophilaceae

HM001269, Methylophilus glucosoxydans, Methylophilaceae

DQ287786, Methylotenera mobilis, type sp., Methylophilaceae

CP002056, Methylotenera versatilis, Methylophilaceae

FR733702, Methylovorus glucosotrophus, type sp., Methylophilaceae

AY486132, Methylovorus mays, Methylophilaceae

DQ287787, Methylobacillus flagellatus, Methylophilaceae

FR733701, Methylobacillus glycogenes, type sp., Methylophilaceae

AY298905, Methylobacillus pratensis, Methylophilaceae

Spirillaceae (2)

GU585672, Spirillum volutans, type sp., Spirillaceae

AY845251, Spirillum winogradskyi, Spirillaceae

AB506456, Sulfuricella denitrificans, type sp., Hydrogenophilaceae

Nitrosomonadaceae (3)

AB070982, Nitrosomonas europaea, type sp., Nitrosomonadaceae

AY123795, Nitrosomonas eutropha, Nitrosomonadaceae

CP000103, Nitrosospira multiformis , Nitrosomonadaceae

EF219370, Georgfuchsia toluolica, type sp., Rhodocyclaceae

AB552842, Sulfuritalea hydrogenivorans, type sp., Rhodocyclaceae

AJ306683, Sterolibacterium denitrificans, type sp., Rhodocyclaceae

DQ442273, Methyloversatilis universalis, type sp., Rhodocyclaceae

AY879297, Denitratisoma oestradiolicum, type sp., Rhodocyclaceae

AB180657, Thiobacter subterraneus, type sp., Unclassified Burkholderiales

Rhodocyclaceae (19)

AJ318917, Dechloromonas denitrificans, Rhodocyclaceae

AY277621, Dechloromonas hortensis, Rhodocyclaceae

Y17060, Ferribacterium limneticum, type sp., Rhodocyclaceae

AY007722, Quatrionicoccus australiensis, type sp., Rhodocyclaceae

AF047462, Dechloromonas agitata, type sp., Rhodocyclaceae

AB166882, Azonexus caeni, Rhodocyclaceae

EF158390, Azonexus hydrophilus, Rhodocyclaceae

AF011350, Azonexus fungiphilus, type sp., Rhodocyclaceae

Y17601, Propionivibrio dicarboxylicus, type sp., Rhodocyclaceae

AF016690, Propionivibrio pelophilus, Rhodocyclaceae

AJ307983, Propionivibrio limicola, Rhodocyclaceae

M34132, Rhodocyclus purpureus, type sp., Rhodocyclaceae

D16208, Rhodocyclus tenuis, Rhodocyclaceae

AF011347, Azospira oryzae, type sp., Rhodocyclaceae

DQ974114, Azospira restricta, Rhodocyclaceae

DQ413148, Zoogloea caeni, Rhodocyclaceae

AJ011506, Zoogloea resiniphila, Rhodocyclaceae

AB201043, Zoogloea oryzae, Rhodocyclaceae

X74913, Zoogloea ramigera, type sp., Rhodocyclaceae

AF011346, Azovibrio restrictus, type sp., Rhodocyclaceae

AF123077, Azoarcus toluclasticus, Rhodocyclaceae

L33694, Azoarcus tolulyticus, Rhodocyclaceae

L33692, Azoarcus toluvorans, Rhodocyclaceae

X77679, Azoarcus evansii, Rhodocyclaceae

Y14701, Azoarcus anaerobius, Rhodocyclaceae

AJ315676, Azoarcus buckelii, Rhodocyclaceae

AF011345, Azoarcus indigens, type sp., Rhodocyclaceae

AF011343, Azoarcus communis, Rhodocyclaceae

AJ005817, Thauera terpenica, Rhodocyclaceae

AJ315677, Thauera aminoaromatica, Rhodocyclaceae

Y17591, Thauera selenatis, type sp., Rhodocyclaceae

AJ315678, Thauera phenylacetica, Rhodocyclaceae

X77118, Thauera aromatica, Rhodocyclaceae

AF123264, Thauera chlorobenzoica, Rhodocyclaceae

Y17590, Thauera mechernichensis, Rhodocyclaceae

AB021377, Thauera butanivorans, Rhodocyclaceae

AJ005816, Thauera linaloolentis, Rhodocyclaceae

Hydrogenophilaceae (5)

FR749905, Hydrogenophilus hirschii, Hydrogenophilaceae

AB009828, Hydrogenophilus thermoluteolus, type sp., Hydrogenophilaceae

EU625664, Hydrogenophilus islandicus, Hydrogenophilaceae

AY219713, Petrobacter succinatimandens, type sp., Hydrogenophilaceae

AJ504663, Tepidiphilus margaritifer, type sp., Hydrogenophilaceae

DQ665916, Uliginosibacterium gangwonense, type sp., Rhodocyclaceae

Xanthomonadaceae (132)

FR733718, Xanthomonas euvesicatoria, Xanthomonadaceae

FR749910, Xanthomonas perforans, Xanthomonadaceae

AB021399, Pseudomonas cissicola, Pseudomonadaceae

Y10762, Xanthomonas cassavae, Xanthomonadaceae

Y10757, Xanthomonas arboricola, Xanthomonadaceae

Y10764, Xanthomonas bromi, Xanthomonadaceae

GU993265, Xanthomonas phaseoli, Xanthomonadaceae

Y10765, Xanthomonas codiaei, Xanthomonadaceae

X95921, Xanthomonas oryzae, Xanthomonadaceae

Y10758, Xanthomonas pisi, Xanthomonadaceae

FR749942, Xanthomonas citri subsp. malvacearum, Xanthomonadaceae

Y10755, Xanthomonas vasicola, Xanthomonadaceae

Y10759, Xanthomonas hortorum, Xanthomonadaceae

X95920, Xanthomonas fragariae, Xanthomonadaceae

JQ955625, Xanthomonas dyei, Xanthomonadaceae

X95922, Xanthomonas populi, Xanthomonadaceae

AF208315, Xanthomonas cynarae, Xanthomonadaceae

Y10763, Xanthomonas theicola, Xanthomonadaceae

AE008922, Xanthomonas campestris, type sp., Xanthomonadaceae

Y10761, Xanthomonas vesicatoria, Xanthomonadaceae

Y10760, Xanthomonas cucurbitae, Xanthomonadaceae

FR749911, Xanthomonas gardneri, Xanthomonadaceae

X95919, Xanthomonas axonopodis, Xanthomonadaceae

AY650027, Pseudoxanthomonas kaohsiungensis, Xanthomonadaceae

AY550263, Pseudoxanthomonas koreensis, Xanthomonadaceae

AY550264, Pseudoxanthomonas daejeonensis, Xanthomonadaceae

AY927994, Pseudoxanthomonas suwonensis, Xanthomonadaceae

AB008507, Pseudoxanthomonas japonensis, Xanthomonadaceae

AF273082, Pseudoxanthomonas mexicana, Xanthomonadaceae

EF424397, Pseudoxanthomonas indica, Xanthomonadaceae

AF427039, Pseudoxanthomonas taiwanensis, Xanthomonadaceae

AJ012231, Pseudoxanthomonas broegbernensis, type sp., Xanthomonadaceae

AF203388, Xylella fastidiosa subsp. multiplex, Xanthomonadaceae

AF192343, Xylella fastidiosa subsp. fastidiosa, type sp., Xanthomonadaceae

AB021391, Pseudomonas boreopolis, Pseudomonadaceae

AF273080, Stenotrophomonas acidaminiphila, Xanthomonadaceae

GQ241320, Stenotrophomonas daejeonensis, Xanthomonadaceae

AJ012229, Stenotrophomonas nitritireducens, Xanthomonadaceae

AM403589, Stenotrophomonas terrae, Xanthomonadaceae

AJ131116, Pseudomonas pictorum, Pseudomonadaceae

AM403587, Stenotrophomonas humi, Xanthomonadaceae

DQ109037, Stenotrophomonas ginsengisoli, Xanthomonadaceae

AB166885, Stenotrophomonas koreensis, Xanthomonadaceae

AB021406, Pseudomonas beteli, Pseudomonadaceae

AB021405, Pseudomonas hibiscicola, Pseudomonadaceae

AB294553, Stenotrophomonas maltophilia, type sp., Xanthomonadaceae

FJ748683, Stenotrophomonas pavanii, Xanthomonadaceae

AB021404, Pseudomonas geniculata, Pseudomonadaceae

EU573216, Stenotrophomonas chelatiphaga, Xanthomonadaceae

AJ293463, Stenotrophomonas rhizophila, Xanthomonadaceae

EF575564, Pseudoxanthomonas sacheonensis, Xanthomonadaceae

DQ438977, Pseudoxanthomonas yeongjuensis, Xanthomonadaceae

AY686710, Pseudoxanthomonas kalamensis, Xanthomonadaceae

DQ178977, Pseudoxanthomonas dokdonensis, Xanthomonadaceae

AM418384, Pseudoxanthomonas spadix, Xanthomonadaceae

Y10754, Xanthomonas hyacinthi, Xanthomonadaceae

Y10756, Xanthomonas melonis, Xanthomonadaceae

X99299, Xanthomonas translucens, Xanthomonadaceae

X95918, Xanthomonas albilineans, Xanthomonadaceae

Y10766, Xanthomonas sacchari, Xanthomonadaceae

EU780693, Lysobacter bugurensis, Xanthomonadaceae

EU833988, Lysobacter xinjiangensis, Xanthomonadaceae

AB245359, Lysobacter panaciterrae, Xanthomonadaceae

EF626688, Luteimonas aquatica, Xanthomonadaceae

DQ846687, Luteimonas composti, Xanthomonadaceae

EU295459, Luteimonas marina, Xanthomonadaceae

AJ012228, Luteimonas mephitis, type sp., Xanthomonadaceae

GU199001, Luteimonas lutimaris, Xanthomonadaceae

EF660758, Luteimonas aestuarii, Xanthomonadaceae

FJ948107, Luteimonas terricola, Xanthomonadaceae

EU376963, Lysobacter oryzae, Xanthomonadaceae

DQ191179, Lysobacter yangpyeongensis, Xanthomonadaceae

DQ462461, Lysobacter niabensis, Xanthomonadaceae

AB166878, Lysobacter koreensis, Xanthomonadaceae

EU908051, Lysobacter korlensis, Xanthomonadaceae

AJ298291, Lysobacter enzymogenes, type sp., Xanthomonadaceae

AB019582, Lysobacter antibioticus, Xanthomonadaceae

AB161361, Lysobacter gummosus, Xanthomonadaceae

EF488749, Lysobacter capsici, Xanthomonadaceae

EF623862, Lysobacter soli, Xanthomonadaceae

AB161360, Lysobacter brunescens, Xanthomonadaceae

AY557615, Silanimonas lenta, type sp., Xanthomonadaceae

EF100698, Lysobacter dokdonensis, Xanthomonadaceae

DQ462462, Lysobacter niastensis, Xanthomonadaceae

AJ519986, Thermomonas fusca, Xanthomonadaceae

DQ154906, Thermomonas koreensis, Xanthomonadaceae

AJ519989, Thermomonas brevis, Xanthomonadaceae

AJ300185, Thermomonas haemolytica, type sp., Xanthomonadaceae

AF542054, Thermomonas hydrothermalis, Xanthomonadaceae

AB245363, Lysobacter ginsengisoli, Xanthomonadaceae

EU237492, Lysobacter ximonensis, Xanthomonadaceae

EU237492, Lysobacter ximonensis, Xanthomonadaceae

AB161359, Lysobacter concretionis, Xanthomonadaceae

HQ315827, Lysobacter arseniciresistens, Xanthomonadaceae

AM283465, Lysobacter defluvii, Xanthomonadaceae

AB299978, Lysobacter spongiicola, Xanthomonadaceae

DQ191178, Lysobacter daejeonensis, Xanthomonadaceae

GU086401, Lysobacter ruishenii, Xanthomonadaceae

EU376961, Arenimonas oryziterrae, Xanthomonadaceae

HQ698842, Arenimonas metalli, Xanthomonadaceae

AM229324, Arenimonas composti, Xanthomonadaceae

DQ239766, Arenimonas malthae, Xanthomonadaceae

AM229325, Arenimonas daejeonensis, Xanthomonadaceae

DQ411038, Arenimonas donghaensis, type sp., Xanthomonadaceae

AB245362, Dokdonella ginsengisoli, Xanthomonadaceae

EU685334, Dokdonella soli, Xanthomonadaceae

AJ969432, Dokdonella fugitiva, Xanthomonadaceae

AY987368, Dokdonella koreensis, type sp., Xanthomonadaceae

EU741687, Rudaea cellulosilytica, type sp., Xanthomonadaceae

AY544768, Aquimonas voraii, type sp., Xanthomonadaceae

AF039167, Rhodanobacter lindaniclasticus, type sp., Xanthomonadaceae

AB286179, Rhodanobacter thiooxydans, Xanthomonadaceae

EU332826, Rhodanobacter ginsenosidimutans, Xanthomonadaceae

EU332829, Rhodanobacter panaciterrae, Xanthomonadaceae

EF166076, Rhodanobacter terrae, Xanthomonadaceae

FJ605268, Rhodanobacter soli, Xanthomonadaceae

AB100608, Rhodanobacter fulvus, Xanthomonadaceae

AM087226, Rhodanobacter spathiphylli, Xanthomonadaceae

EU682683, Frateuria terrea, Xanthomonadaceae

EF166075, Rhodanobacter ginsengisoli, Xanthomonadaceae

AB091194, Frateuria aurantia, type sp., Xanthomonadaceae

AB245367, Dyella ginsengisoli, Xanthomonadaceae

EU604272, Dyella soli, Xanthomonadaceae

AY884571, Dyella koreensis, Xanthomonadaceae

AM939778, Dyella marensis, Xanthomonadaceae

EF397574, Dyella thiooxydans, Xanthomonadaceae

AJ580498, Luteibacter rhizovicinus, type sp., Xanthomonadaceae

FM212561, Luteibacter anthropi, Xanthomonadaceae

DQ181549, Luteibacter yeojuensis, Xanthomonadaceae

AB110498, Dyella japonica, type sp., Xanthomonadaceae

EU604273, Dyella terrae, Xanthomonadaceae

AJ311653, Fulvimonas soli, type sp., Xanthomonadaceae

FN298515, Pseudofulvimonas gallinarii, type sp., Xanthomonadaceae

AF387301, Acidiferrobacter thiooxydans, type sp., Ectothiorhodospiraceae

AF110274, Beggiatoa alba, type sp., Thiotrichaceae

DQ834966, Methylohalomonas lacus, type sp., Unclassified Gammaproteobacteria

Moraxellaceae (79)

U39399, Psychrobacter immobilis, type sp., Moraxellaceae

U46144, Psychrobacter phenylpyruvicus, Moraxellaceae

AB094794, Psychrobacter okhotskensis, Moraxellaceae

AY660685, Psychrobacter cryohalolentis, Moraxellaceae

AY639871, Psychrobacter cibarius, Moraxellaceae

AJ609555, Psychrobacter urativorans, Moraxellaceae

AJ312213, Psychrobacter glacincola, Moraxellaceae

AJ609556, Psychrobacter frigidicola, Moraxellaceae

AJ430828, Psychrobacter luti, Moraxellaceae

AY444822, Psychrobacter arcticus, Moraxellaceae

AJ430827, Psychrobacter fozii, Moraxellaceae

AJ313425, Psychrobacter nivimaris, Moraxellaceae

AB453700, Psychrobacter piscatorii, Moraxellaceae

AJ272303, Psychrobacter proteolyticus, Moraxellaceae

AY722804, Psychrobacter aquimaris, Moraxellaceae

AY722805, Psychrobacter namhaensis, Moraxellaceae

AJ584833, Psychrobacter aquaticus, Moraxellaceae

AJ584832, Psychrobacter vallis, Moraxellaceae

AJ309941, Psychrobacter marincola, Moraxellaceae

AJ309940, Psychrobacter submarinus, Moraxellaceae

AJ539104, Psychrobacter salsus, Moraxellaceae

AF441201, Psychrobacter jeotgali, Moraxellaceae

AJ609272, Psychrobacter maritimus, Moraxellaceae

AY513645, Psychrobacter alimentarius, Moraxellaceae

AJ421528, Psychrobacter faecalis, Moraxellaceae

AJ437696, Psychrobacter pulmonis, Moraxellaceae

AB438958, Psychrobacter fulvigenes, Moraxellaceae

AY842259, Psychrobacter celer, Moraxellaceae

AB016057, Psychrobacter pacificensis, Moraxellaceae

EU939718, Psychrobacter aestuarii, Moraxellaceae

AJ609273, Psychrobacter arenosus, Moraxellaceae

HM212668, Psychrobacter sanguinis, Moraxellaceae

FM165580, Psychrobacter lutiphocae, Moraxellaceae

AJ550856, Enhydrobacter aerosaccus, type sp., Moraxellaceae

HM161851, Moraxella atlantae, Moraxellaceae

DQ156147, Moraxella boevrei, Moraxellaceae

FR822735, Moraxella lincolnii, Moraxellaceae

AM884564, Moraxella pluranimalium, Moraxellaceae

FM872292, Moraxella porci, Moraxellaceae

AF005188, Moraxella cuniculi, Moraxellaceae

AF005182, Moraxella bovis, Moraxellaceae

AF005187, Moraxella caviae, Moraxellaceae

DQ153089, Moraxella bovoculi, Moraxellaceae

AF005186, Moraxella ovis, Moraxellaceae

D64049, Moraxella lacunata, type sp., Moraxellaceae

AF005184, Moraxella equi, Moraxellaceae

DQ156148, Moraxella caprae, Moraxellaceae

HM152563, Moraxella nonliquefaciens, Moraxellaceae

AF005185, Moraxella catarrhalis, Moraxellaceae

AJ269511, Moraxella canis, Moraxellaceae

AF509827, Acinetobacter bouvetii, Moraxellaceae

Z93440, Acinetobacter johnsonii, Moraxellaceae

AJ278311, Acinetobacter schindleri, Moraxellaceae

AJ293694, Acinetobacter gyllenbergii, Moraxellaceae

AF509830, Acinetobacter tandoii, Moraxellaceae

AF509825, Acinetobacter tjernbergiae, Moraxellaceae

X81662, Acinetobacter haemolyticus, Moraxellaceae

AJ626712, Acinetobacter beijerinckii, Moraxellaceae

X81665, Acinetobacter lwoffii, Moraxellaceae

X81659, Acinetobacter guillouiae, Moraxellaceae

Z93443, Acinetobacter bereziniae, Moraxellaceae

HQ180192, Acinetobacter nosocomialis, Moraxellaceae

HQ180184, Acinetobacter pittii, Moraxellaceae

AJ888983, Acinetobacter calcoaceticus, type sp., Moraxellaceae

DQ832256, Acinetobacter brisouii, Moraxellaceae

AF509820, Acinetobacter baylyi, Moraxellaceae

AF509823, Acinetobacter towneri, Moraxellaceae

AF509823, Acinetobacter towneri, Moraxellaceae

EU290155, Acinetobacter soli, Moraxellaceae

AJ275038, Acinetobacter ursingii, Moraxellaceae

AJ293691, Acinetobacter parvus, Moraxellaceae

AJ295007, Acinetobacter venetianus, Moraxellaceae

X81660, Acinetobacter baumannii, Moraxellaceae

AF509829, Acinetobacter gerneri, Moraxellaceae

X81664, Acinetobacter junii, Moraxellaceae

X81666, Acinetobacter radioresistens, Moraxellaceae

EF204258, Acinetobacter rudis, Moraxellaceae

AF513979, Alkanindiges illinoisensis, type sp., Moraxellaceae

GU731671, Paraperlucidibaca baekdonensis, type sp., Moraxellaceae

DQ664237, Perlucidibaca piscinae, type sp., Moraxellaceae

Sinobacteraceae (12)

AJ001010, Nevskia ramosa, type sp., Nevskiaceae

EF178286, Nevskia soli, Nevskiaceae

GQ845011, Nevskia terrae, Nevskiaceae

AY363245, Hydrocarboniphaga effusa, type sp., Nevskiaceae

EU313812, Hydrocarboniphaga daqingensis, Nevskiaceae

AB257720, Panacagrimonas perspica, type sp., Xanthomonadaceae

AJ555478, Solimonas variicoloris, Unclassified Gammaproteobacteria

EF067861, Solimonas soli, type sp., Unclassified Gammaproteobacteria

EF154515, Solimonas flava, Unclassified Gammaproteobacteria

EU303271, Solimonas aquatica, Unclassified Gammaproteobacteria

AJ313020, Alkanibacter difficilis, type sp., Sinobacteraceae

EF605262, Steroidobacter denitrificans, type sp., Sinobacteraceae

Salinisphaeraceae (4)

EF988634, Salinisphaera dokdonensis , Salinisphaeraceae

AJ421425, Salinisphaera shabanensis, type sp., Salinisphaeraceae

EU740416, Salinisphaera hydrothermalis, Salinisphaeraceae

HM137558, Salinisphaera orenii, Salinisphaeraceae

Halothiobacillaceae (6)

U58020, Halothiobacillus halophilus, Halothiobacillaceae

M90662, Halothiobacillus hydrothermalis, Halothiobacillaceae

EU124668, Thioalkalibacter halophilus, type sp., Halothiobacillaceae

AF170419, Halothiobacillus kellyi, Halothiobacillaceae

AB304258, Thiofaba tepidiphila, type sp., Halothiobacillaceae

AB118236, Thiovirga sulfuroxydans, type sp., Halothiobacillaceae

Cardiobacteriaceae (4)

M35014, Cardiobacterium hominis, type sp., Cardiobacteriaceae

AF506987, Cardiobacterium valvarum, Cardiobacteriaceae

M35015, Suttonella indologenes, type sp., Cardiobacteriaceae

AJ717394, Suttonella ornithocola, Cardiobacteriaceae

EU008088, Ignatzschineria indica, Xanthomonadaceae

EU008089, Ignatzschineria ureiclastica, Xanthomonadaceae

AJ252143, Ignatzschineria larvae, type sp., Xanthomonadaceae

AM397063, Wohlfahrtiimonas chitiniclastica, type sp., Xanthomonadaceae

GU206550, Plasticicumulans acidivorans, type sp., Unclassified Gammaproteobacteria

AB266389, Thioprofundum hispidum, Thioalkalispiraceae

AB468957, Thioprofundum lithotrophicum, type sp., Thioalkalispiraceae

DQ469584, Thiohalophilus thiocyanatoxydans, type sp., Thioalkalispiraceae

HM208383, Coxiella burnetii, type sp., Coxiellaceae

Granulosicoccaceae (2)

EF495228, Granulosicoccus antarcticus, type sp., Granulosicoccaceae

FJ535355, Granulosicoccus coccoides, Granulosicoccaceae

AF481118, Thioalkalispira microaerophila, type sp., Thioalkalispiraceae

Chromatiaceae (45)

AJ242772, Thiocapsa litoralis, Chromatiaceae

AJ006062, Thiocapsa rosea, Chromatiaceae

AF112998, Thiocapsa marina, Chromatiaceae

AF113000, Thiocapsa roseopersicina, type sp., Chromatiaceae

Y12297, Thiolamprovum pedioforme, type sp., Chromatiaceae

AJ404006, Thiobaca trueperi, type sp., Chromatiaceae

AJ223235, Lamprocystis purpurea, Chromatiaceae

AJ006063, Lamprocystis roseopersicina, type sp., Chromatiaceae

EF999974, Thiodictyon bacillosum, Chromatiaceae

EF999973, Thiodictyon elegans, type sp., Chromatiaceae

Y11317, Thiocystis gelatinosa, Chromatiaceae

AJ224438, Thiocystis violascens, Chromatiaceae

AM086640, Thiocystis cadagnonensis, Chromatiaceae

Y12372, Thiocystis minor, Chromatiaceae

AM086641, Thiocystis chemoclinalis, Chromatiaceae

Y11315, Thiocystis violacea, type sp., Chromatiaceae

AJ223234, Chromatium okenii, type sp., Chromatiaceae

AJ224430, Isochromatium buderi, type sp., Chromatiaceae

AM282561, Thiorhodococcus kakinadensis, Chromatiaceae

FJ482231, Thiohalobacter thiocyanaticus, type sp., Unclassified Gammaproteobacteria

AJ971090, Thiorhodococcus mannitoliphagus, Chromatiaceae

Y11316, Thiorhodococcus minor, type sp., Chromatiaceae

AM993156, Thiorhodococcus modestalkaliphilus, Chromatiaceae

AM748925, Thiophaeococcus mangrovi, type sp., Chromatiaceae

AM282559, Thiorhodococcus bheemlicus, Chromatiaceae

AM712619, Allochromatium phaeobacterium, Chromatiaceae

Y12365, Allochromatium warmingii, Chromatiaceae

AM399029, Allochromatium renukae, Chromatiaceae

Y12369, Allochromatium minutissimum, Chromatiaceae

FM178268, Allochromatium vinosum, type sp., Chromatiaceae

FM210274, Marichromatium fluminis, Chromatiaceae

X93473, Marichromatium gracile, type sp., Chromatiaceae

AJ224439, Marichromatium purpuratum, Chromatiaceae

AJ543328, Marichromatium indicum, Chromatiaceae

AM180952, Marichromatium bheemlicum, Chromatiaceae

AM283535, Halochromatium roseum, Chromatiaceae

X98597, Halochromatium salexigens, type sp., Chromatiaceae

X93472, Halochromatium glycolicum, Chromatiaceae

AJ002796, Thiohalocapsa halophila, type sp., Chromatiaceae

AJ010125, Thioflavicoccus mobilis, type sp., Chromatiaceae

AJ277023, Thioalkalicoccus limnaeus, type sp., Chromatiaceae

Y12373, Thiococcus pfennigii, type sp., Chromatiaceae

X84316, Rhabdochromatium marinum, type sp., Chromatiaceae

AB016986, Thiorhodovibrio winogradskyi, type sp., Chromatiaceae

AM491592, Thiohalocapsa marina, Chromatiaceae

Ectothiorhodospiraceae (21)

AF329083, Thioalkalivibrio jannaschii, Ectothiorhodospiraceae

AF126546, Thioalkalivibrio versutus, type sp., Ectothiorhodospiraceae

AF126547, Thioalkalivibrio nitratis, Ectothiorhodospiraceae

AF126547, Thioalkalivibrio nitratis, Ectothiorhodospiraceae

AF302081, Thioalkalivibrio thiocyanoxidans, Ectothiorhodospiraceae

AY346464, Thioalkalivibrio halophilus, Ectothiorhodospiraceae

AY079010, Thioalkalivibrio nitratireducens, Ectothiorhodospiraceae

AF151432, Thioalkalivibrio paradoxus, Ectothiorhodospiraceae

AJ006530, Thiorhodospira sibirica, type sp., Ectothiorhodospiraceae

AF126545, Thioalkalivibrio denitrificans, Ectothiorhodospiraceae

AY360060, Thioalkalivibrio thiocyanodenitrificans, Ectothiorhodospiraceae

EU709878, Thioalkalivibrio sulfidiphilus, Ectothiorhodospiraceae

X93476, Ectothiorhodospira marina, Ectothiorhodospiraceae

AM943121, Ectothiorhodospira variabilis, Ectothiorhodospiraceae

X93479, Ectothiorhodospira haloalkaliphila, Ectothiorhodospiraceae

FM244738, Ectothiorhodospira salini, Ectothiorhodospiraceae

X93481, Ectothiorhodospira mobilis, type sp., Ectothiorhodospiraceae

FR733667, Ectothiorhodospira shaposhnikovii, Ectothiorhodospiraceae

HM149323, Ectothiorhodospira magna, Ectothiorhodospiraceae

AY298904, Ectothiorhodosinus mongolicus, type sp., Ectothiorhodospiraceae

EU169227, Thiohalospira alkaliphila, Ectothiorhodospiraceae

DQ469576, Thiohalospira halophila, type sp., Ectothiorhodospiraceae

EF117909, Thiohalomonas denitrificans, type sp., Unclassified Gammaproteobacteria

DQ836238, Thiohalomonas nitratireducens, Unclassified Gammaproteobacteria

EU837269, Thioalbus denitrificans, type sp., Ectothiorhodospiraceae

DQ789390, Methylonatrum kenyense, type sp., Unclassified Gammaproteobacteria

X93477, Halorhodospira abdelmalekii, Ectothiorhodospiraceae

FR749892, Halorhodospira halochloris, Ectothiorhodospiraceae

CP000544, Halorhodospira halophila, type sp., Ectothiorhodospiraceae

AJ318525, Halorhodospira neutriphila, Ectothiorhodospiraceae

AF114783, Alkalispirillum mobile, type sp., Ectothiorhodospiraceae

AF406554, Alkalilimnicola ehrlichii, Ectothiorhodospiraceae

AJ404972, Alkalilimnicola halodurans, type sp., Ectothiorhodospiraceae

EF103128, Natronocella acetinitrilica, type sp., Ectothiorhodospiraceae

M26631, Arhodomonas aquaeolei, type sp., Ectothiorhodospiraceae

HM038001, Nitrococcus mobilis, type sp., Ectothiorhodospiraceae

AM404263, Aquisalimonas asiatica, type sp., Ectothiorhodospiraceae

AB536747, Methylothermus subterraneus, Methylococcaceae

AY829009, Methylothermus thermalis, type sp., Methylococcaceae

AJ581837, Methylohalobius crimeensis, type sp., Methylococcaceae

AB245479, Sulfurivirga caldicuralii, type sp., Piscirickettsiaceae

CP000127, Nitrosococcus oceani , Chromatiaceae

Acidithiobacillaceae (5)

AJ459804, Acidithiobacillus albertensis, Acidithiobacillaceae

Y11596, Acidithiobacillus thiooxidans, type sp., Acidithiobacillaceae

AF376020, Acidithiobacillus ferrivorans, Acidithiobacillaceae

AF465604, Acidithiobacillus ferrooxidans, Acidithiobacillaceae

Z29975, Acidithiobacillus caldus, Acidithiobacillaceae

AJ459801, Thermithiobacillus tepidarius, type sp., Thermithiobacillaceae

DQ469582, Thiohalorhabdus denitrificans, type sp., Unclassified Gammaproteobacteria

Alphaproteobacteria (1101)

Bradyrhizobiaceae (31)

M65248, Afipia felis, type sp., Bradyrhizobiaceae

AB021393, Pseudomonas carboxydohydrogena, Pseudomonadaceae

FR733697, Oligotropha carboxidovorans, type sp., Bradyrhizobiaceae

M69186, Afipia clevelandensis, Bradyrhizobiaceae

AF069956, Nitrobacter alkalicus, Bradyrhizobiaceae

CP000115, Nitrobacter winogradskyi, type sp., Bradyrhizobiaceae

AM114522, Nitrobacter vulgaris, Bradyrhizobiaceae

L11663, Nitrobacter hamburgensis, Bradyrhizobiaceae

AF123085, Rhodopseudomonas faecalis, Bradyrhizobiaceae

AB087719, Rhodopseudomonas rhenobacensis, Bradyrhizobiaceae

AB498818, Rhodopseudomonas pseudopalustris, Bradyrhizobiaceae

AM947938, Rhodopseudomonas parapalustris, Bradyrhizobiaceae

AB498815, Rhodopseudomonas palustris, type sp., Bradyrhizobiaceae

FN813512, Rhodopseudomonas harwoodiae, Bradyrhizobiaceae

D78366, Agromonas oligotrophica, type sp., Bradyrhizobiaceae

AF338176, Bradyrhizobium denitrificans, Bradyrhizobiaceae

AY372184, Bradyrhizobium betae, Bradyrhizobiaceae

AB300992, Bradyrhizobium iriomotense, Bradyrhizobiaceae

HQ231463, Bradyrhizobium huanghuaihaiense, Bradyrhizobiaceae

AF208513, Bradyrhizobium liaoningense, Bradyrhizobiaceae

AF193818, Bradyrhizobium yuanmingense, Bradyrhizobiaceae

AJ558025, Bradyrhizobium canariense, Bradyrhizobiaceae

U69638, Bradyrhizobium japonicum, type sp., Bradyrhizobiaceae

X87273, Rhizobium lupini, Rhizobiaceae

AF288304, Afipia birgiae, Bradyrhizobiaceae

U87759, Afipia broomeae, Bradyrhizobiaceae

AY029562, Afipia massiliensis, Bradyrhizobiaceae

AY624134, Bradyrhizobium jicamae, Bradyrhizobiaceae

U35000, Bradyrhizobium elkanii, Bradyrhizobiaceae

AY624135, Bradyrhizobium pachyrhizi, Bradyrhizobiaceae

GU433448, Bradyrhizobium lablabi, Bradyrhizobiaceae

DQ062742, Pseudolabrys taiwanensis, type sp., Xanthobacteraceae

DQ417335, Labrys neptuniae, Xanthobacteraceae

AY362040, Labrys portucalensis, Xanthobacteraceae

AB236172, Labrys methylaminiphilus, Xanthobacteraceae

AJ535707, Labrys monachus, type sp., Xanthobacteraceae

AB236170, Labrys miyagiensis, Xanthobacteraceae

AB236169, Labrys okinawensis, Xanthobacteraceae

EF382666, Labrys wisconsinensis, Xanthobacteraceae

Beijerinckiaceae (16)

AJ563931, Beijerinckia indica subsp. lacticogenes, Beijerinckiaceae

CP001016, Beijerinckia indica subsp. indica, type sp., Beijerinckiaceae

AJ563934, Beijerinckia derxii subsp. venezuelae, Beijerinckiaceae

AJ563933, Beijerinckia derxii subsp. derxii, Beijerinckiaceae

AJ563932, Beijerinckia mobilis, Beijerinckiaceae

EU401905, Beijerinckia doebereinerae, Beijerinckiaceae

FR686343, Methyloferula stellata, type.sp, Beijerinckiaceae

FR733696, Rhodoblastus acidophilus, type sp., Bradyrhizobiaceae

AM040096, Rhodoblastus sphagnicola, Bradyrhizobiaceae

FM252034, Methylovirgula ligni, type sp., Beijerinckiaceae

AJ278726, Methylocapsa acidiphila, type sp., Beijerinckiaceae

FN433469, Methylocapsa aurea, Beijerinckiaceae

EU586035, Methylorosula polaris, type sp., Beijerinckiaceae

Y17144, Methylocella palustris, type sp., Beijerinckiaceae

AJ491847, Methylocella silvestris, Beijerinckiaceae

AJ555244, Methylocella tundrae, Beijerinckiaceae

D25311, Rhodoplanes elegans, Hyphomicrobiaceae

AB087717, Rhodoplanes serenus, Hyphomicrobiaceae

FM202448, Rhodoplanes pokkaliisoli, Hyphomicrobiaceae

D25313, Rhodoplanes roseus, type sp., Hyphomicrobiaceae

D25313, Rhodoplanes roseus, type sp., Hyphomicrobiaceae

AM502287, Blastochloris gulmargensis, Hyphomicrobiaceae

AF084495, Blastochloris viridis, type sp., Hyphomicrobiaceae

D86514, Blastochloris sulfoviridis, Hyphomicrobiaceae

Methylocystaceae (7)

Y18946, Methylosinus sporium, Methylocystaceae

Y18947, Methylosinus trichosporium, type sp., Methylocystaceae

Y18945, Methylocystis parvus, type sp., Methylocystaceae

AJ458473, Methylocystis echinoides, Methylocystaceae

DQ364433, Methylocystis hirsuta, Methylocystaceae

AJ414656, Methylocystis rosea, Methylocystaceae

AM283543, Methylocystis heyeri, Methylocystaceae

Methylobacteriaceae (37)

AJ250801, Methylobacterium fujisawaense, Methylobacteriaceae

AY683045, Methylobacterium oryzae, Methylobacteriaceae

EF126746, Methylobacterium phyllosphaerae, Methylobacteriaceae

FN868949, Methylobacterium longum, Methylobacteriaceae

AB252208, Methylobacterium tardum, Methylobacteriaceae

D32227, Methylobacterium radiotolerans, Methylobacteriaceae

EF174498, Methylobacterium aerolatum, Methylobacteriaceae

AB252202, Methylobacterium persicinum, Methylobacteriaceae

AB252201, Methylobacterium komagatae, Methylobacteriaceae

AB175649, Methylobacterium brachiatum, Methylobacteriaceae

AB175636, Methylobacterium mesophilicum, Methylobacteriaceae

AB252200, Methylobacterium gregans, Methylobacteriaceae

AJ635304, Methylobacterium hispanicum, Methylobacteriaceae

AM040156, Methylobacterium adhaesivum, Methylobacteriaceae

EU912445, Methylobacterium gossipiicola, Methylobacteriaceae

EF174497, Methylobacterium iners, Methylobacteriaceae

AB607860, Methylobacterium oxalidis, Methylobacteriaceae

FJ268657, Methylobacterium bullatum, Methylobacteriaceae

FJ157976, Methylobacterium marchantiae, Methylobacteriaceae

DQ471331, Methylobacterium jeotgali, Methylobacteriaceae

FR733885, Methylobacterium cerastii, Methylobacteriaceae

AF514774, Methylobacterium podarium, Methylobacteriaceae

AB175642, Methylobacterium rhodesianum, Methylobacteriaceae

AY251818, Methylobacterium populi, Methylobacteriaceae

U58018, Methylobacterium thiocyanatum, Methylobacteriaceae

AB175647, Methylobacterium zatmanii, Methylobacteriaceae

AB175629, Methylobacterium aminovorans, Methylobacteriaceae

D32224, Methylobacterium extorquens, Methylobacteriaceae

AB175645, Methylobacterium suomiense, Methylobacteriaceae

EF015478, Methylobacterium salsuginis, Methylobacteriaceae

AB175644, Methylobacterium rhodinum, Methylobacteriaceae

AJ635303, Methylobacterium aquaticum, Methylobacteriaceae

EF426729, Methylobacterium platani, Methylobacteriaceae

AJ851087, Methylobacterium variabile, Methylobacteriaceae

AJ888239, Methylobacterium isbiliense, Methylobacteriaceae

AF220763, Methylobacterium nodulans, Methylobacteriaceae

AB175638, Methylobacterium organophilum, type sp., Methylobacteriaceae

AF288300, Bosea eneae, Bradyrhizobiaceae

AF288306, Bosea vestrisii, Bradyrhizobiaceae

AJ250796, Bosea thiooxidans, type sp., Bradyrhizobiaceae

AF273081, Bosea minatitlanensis, Bradyrhizobiaceae

AF288309, Bosea massiliensis, Bradyrhizobiaceae

EF584507, Chelatococcus daeguensis, Beijerinckiaceae

DQ322070, Chelatococcus sambhunathii, Beijerinckiaceae

AJ294349, Chelatococcus asaccharovorans, type sp., Beijerinckiaceae

AB098515, Microvirga flocculans, type sp., Methylobacteriaceae

GQ421849, Microvirga aerilata, Methylobacteriaceae

FR733708, Microvirga subterranea, type sp., Methylobacteriaceae

EU727176, Microvirga guangxiensis, Methylobacteriaceae

GQ421848, Microvirga aerophila, Methylobacteriaceae

FN430422, Camelimonas lactis, type sp., Beijerinckiaceae

FR851926, Camelimonas abortus, Beijerinckiaceae

EU878006, Salinarimonas rosea, type sp., Bradyrhizobiaceae

GU125653, Salinarimonas ramus, Bradyrhizobiaceae

DQ404188, Hansschlegelia plantiphila, type sp., Methylocystaceae

DQ916067, Hansschlegelia zhihuaiae, Methylocystaceae

FR733694, Albibacter methylovorans, type sp., Methylocystaceae

AF004844, Methylopila capsulata, type sp., Methylocystaceae

FJ502233, Methylopila jiangsuensis, Methylocystaceae

AJ535709, Angulomicrobium amanitiforme, Hyphomicrobiaceae

AJ535708, Angulomicrobium tetraedrale, type sp., Hyphomicrobiaceae

AF004845, Methylorhabdus multivorans, type sp., Hyphomicrobiaceae

AB166877, Starkeya koreensis, Xanthobacteraceae

D32247, Starkeya novella, type sp., Xanthobacteraceae

AM778407, Ancylobacter oerskovii, Xanthobacteraceae

AY056830, Ancylobacter rudongensis, Xanthobacteraceae

EU589386, Ancylobacter dichloromethanicus, Xanthobacteraceae

M62790, Ancylobacter aquaticus, type sp., Xanthobacteraceae

AY211515, Ancylobacter vacuolatus, Xanthobacteraceae

AY211516, Ancylobacter polymorphus, Xanthobacteraceae

FR733686, Aquabacter spiritensis, type sp., Hyphomicrobiaceae

X99469, Xanthobacter tagetidis, Xanthobacteraceae

AF399969, Xanthobacter aminoxidans, Xanthobacteraceae

X94199, Xanthobacter flavus, Xanthobacteraceae

X94201, Xanthobacter autotrophicus, type sp., Xanthobacteraceae

AF399970, Xanthobacter viscosus, Xanthobacteraceae

AF391130, Azorhizobium doebereinerae, Xanthobacteraceae

D11342, Azorhizobium caulinodans, type sp., Xanthobacteraceae

X94198, Xanthobacter agilis, Xanthobacteraceae

AY039817, Kaistia adipata, type sp., Rhizobiaceae

AB244762, Kaistia granuli, Rhizobiaceae

EU723082, Kaistia terrae, Rhizobiaceae

AM409363, Kaistia geumhonensis, Rhizobiaceae

EF592609, Kaistia soli, Rhizobiaceae

AM409364, Kaistia dalseonensis, Rhizobiaceae

Hyphomicrobiaceae (16)

HM037996, Pedomicrobium americanum, Hyphomicrobiaceae

X97693, Pedomicrobium australicum, Hyphomicrobiaceae

GU269548, Pedomicrobium ferrugineum, type sp., Hyphomicrobiaceae

GU269549, Pedomicrobium manganicum, Hyphomicrobiaceae

Y14313, Filomicrobium fusiforme, type sp., Hyphomicrobiaceae

EF117253, Filomicrobium insigne, Hyphomicrobiaceae

AB543807, Hyphomicrobium vulgare, type sp., Hyphomicrobiaceae

Y14305, Hyphomicrobium zavarzinii, Hyphomicrobiaceae

Y14303, Hyphomicrobium hollandicum, Hyphomicrobiaceae

Y14311, Hyphomicrobium facile subsp. tolerans, Hyphomicrobiaceae

Y14310, Hyphomicrobium facile subsp. ureaphilum, Hyphomicrobiaceae

Y14309, Hyphomicrobium facile subsp. facile, Hyphomicrobiaceae

CP002083, Hyphomicrobium denitrificans, Hyphomicrobiaceae

CP002083, Hyphomicrobium denitrificans, Hyphomicrobiaceae

AF198623, Hyphomicrobium chloromethanicum, Hyphomicrobiaceae

Y14307, Hyphomicrobium methylovorum, Hyphomicrobiaceae

AF235089, Hyphomicrobium sulfonivorans, Hyphomicrobiaceae

AB365487, Rhizomicrobium electricum, Unclassified Alphaproteobacteria

AB081581, Rhizomicrobium palustre, type sp., Unclassified Alphaproteobacteria

AF180468, Meganema perideroedes, type sp., Methylobacteriaceae

AM403172, Geminicoccus roseus, type sp., Unclassified Alphaproteobacteria

HM037994, Prosthecomicrobium hirschii, Hyphomicrobiaceae

FN666247, Rhodomicrobium vannielii, type sp., Hyphomicrobiaceae

AB127972, Pleomorphomonas koreensis, Methylocystaceae

AB159680, Pleomorphomonas oryzae, type sp., Methylocystaceae

AB017203, Prosthecomicrobium pneumaticum, type sp., Hyphomicrobiaceae

FJ594057, Agaricicola taiwanensis, type sp., Rhodobacteraceae

DQ097300, Amorphus coralli, type sp., Unclassified Rhizobiales

FJ998414, Amorphus orientalis, Unclassified Rhizobiales

Caulobacteraceae (41)

AJ227797, Brevundimonas poindexterae, Caulobacteraceae

AJ227798, Brevundimonas staleyi, Caulobacteraceae

D12785, Brevundimonas bullata, Caulobacteraceae

EF363713, Brevundimonas lenta, Caulobacteraceae

AJ227784, Brevundimonas subvibrioides, Caulobacteraceae

EU143355, Brevundimonas basaltis, Caulobacteraceae

AJ227782, Brevundimonas bacteroides, Caulobacteraceae

AJ227783, Brevundimonas variabilis, Caulobacteraceae

AJ227785, Brevundimonas alba, Caulobacteraceae

AY971368, Brevundimonas kwangchunensis, Caulobacteraceae

DQ372984, Brevundimonas aveniformis, Caulobacteraceae

FR775448, Brevundimonas faecalis, Caulobacteraceae

DQ335215, Brevundimonas terrae, Caulobacteraceae

AB021415, Brevundimonas diminuta, type sp., Caulobacteraceae

AJ227779, Brevundimonas vancanneytii, Caulobacteraceae

FJ544245, Brevundimonas naejangsanensis, Caulobacteraceae

M83810, Brevundimonas halotolerans, Caulobacteraceae

AM087199, Asticcacaulis benevestitus, Caulobacteraceae

AY500141, Asticcacaulis taihuensis, Caulobacteraceae

AJ247193, Asticcacaulis biprosthecium, Caulobacteraceae

AJ247194, Asticcacaulis excentricus, type sp., Caulobacteraceae

AJ227801, Brevundimonas mediterranea, Caulobacteraceae

DQ442520, Streptomyces longisporoflavus, Streptomycetaceae

AJ227786, Brevundimonas intermedia, Caulobacteraceae

AB071954, Brevundimonas nasdae, Caulobacteraceae

AJ227780, Brevundimonas vesicularis, Caulobacteraceae

AJ227787, Brevundimonas aurantiaca, Caulobacteraceae

AJ227759, Caulobacter fusiformis, Caulobacteraceae

AB271055, Caulobacter ginsengisoli, Caulobacteraceae

AB023427, Caulobacter segnis, Caulobacteraceae

AJ009957, Caulobacter vibrioides, type sp., Caulobacteraceae

AJ227774, Caulobacter mirabilis, Caulobacteraceae

AJ227758, Caulobacter henricii, Caulobacteraceae

AJ244650, Phenylobacterium haematophilum, Caulobacteraceae

AJ227767, Phenylobacterium conjunctum, Caulobacteraceae

AJ717391, Phenylobacterium falsum, Caulobacteraceae

Y18216, Phenylobacterium immobile, type sp., Caulobacteraceae

HM047736, Phenylobacterium muchangponense, Caulobacteraceae

AB166881, Phenylobacterium koreense, Caulobacteraceae

EU022524, Phenylobacterium composti, Caulobacteraceae

AY534887, Phenylobacterium lituiforme, Caulobacteraceae

AB175663, Pseudovibrio ascidiaceicola, Rhodobacteraceae

AB246748, Pseudovibrio japonicus, Rhodobacteraceae

AY486423, Pseudovibrio denitrificans, type sp., Rhodobacteraceae

AF513441, Nesiotobacter exalbescens, type sp., Rhodobacteraceae

D85832, Roseibium denhamense, type sp., Rhodobacteraceae

D85836, Roseibium hamelinense, Rhodobacteraceae

AJ582083, Labrenzia alexandrii, type sp., Rhodobacteraceae

AY628423, Labrenzia marina, Rhodobacteraceae

AJ878875, Labrenzia alba, Rhodobacteraceae

AAUW01000023, Labrenzia aggregata, Rhodobacteraceae

AJ400704, Pannonibacter phragmitetus, type sp., Rhodobacteraceae

EU726271, Stappia indica, Rhodobacteraceae

D88525, Stappia stellulata, type sp., Rhodobacteraceae

GQ221761, Vasilyevaea enhydra, type sp., Unclassified Rhizobiales

FJ560749, Vasilyevaea mishustinii, Unclassified Rhizobiales

EF012357, Devosia insulae, Hyphomicrobiaceae

HM474794, Devosia glacialis, Hyphomicrobiaceae

GU441678, Devosia psychrophila, Hyphomicrobiaceae

EF433462, Devosia chinhatensis, Hyphomicrobiaceae

AB361068, Devosia yakushimensis , Hyphomicrobiaceae

EF433461, Devosia crocina, Hyphomicrobiaceae

DQ303125, Devosia soli, Hyphomicrobiaceae

AJ549086, Devosia riboflavina, type sp., Hyphomicrobiaceae

AM293857, Devosia subaequoris, Hyphomicrobiaceae

AF469072, Devosia neptuniae, Hyphomicrobiaceae

AJ786801, Devosia limi, Hyphomicrobiaceae

EF433460, Devosia albogilva, Hyphomicrobiaceae

EF575560, Devosia geojensis, Hyphomicrobiaceae

EF988631, Maritalea myrionectae, type sp., Hyphomicrobiaceae

AB583774, Maritalea porphyrae, Hyphomicrobiaceae

EU255260, Maritalea mobilis, type sp., Hyphomicrobiaceae

EF211830, Cucumibacter marinus, type sp., Hyphomicrobiaceae

EU709017, Pelagibacterium halotolerans, type sp., Hyphomicrobiaceae

EF540455, Pelagibacterium luteolum, Hyphomicrobiaceae

EF465533, Pseudoxanthobacter soli, type sp., Xanthobacteraceae

Rhizobiaceae and Aurantimonadaceae (73)

U71078, Rhizobium hainanense, Rhizobiaceae

EF035074, Rhizobium multihospitium, Rhizobiaceae

U89832, Rhizobium tropici, Rhizobiaceae

EF061096, Rhizobium miluonense, Rhizobiaceae

AY626395, Rhizobium rubi, Rhizobiaceae

AY738130, Rhizobium lusitanum, Rhizobiaceae

D14501, Rhizobium rhizogenes, Rhizobiaceae

X67234, Rhizobium leucaenae, Rhizobiaceae

FJ839677, Rhizobium vallis, Rhizobiaceae

EU256434, Rhizobium tubonense, Rhizobiaceae

U29386, Rhizobium leguminosarum, type sp., Rhizobiaceae

EF141340, Rhizobium phaseoli, Rhizobiaceae

EU867317, Rhizobium endophyticum, Rhizobiaceae

EU256404, Rhizobium tibeticum, Rhizobiaceae

U28916, Rhizobium etli, Rhizobiaceae

AY509899, Rhizobium pisi, Rhizobiaceae

DQ835306, Rhizobium fabae, Rhizobiaceae

AF364069, Rhizobium loessense, Rhizobiaceae

AF364069, Rhizobium loessense, Rhizobiaceae

U89817, Rhizobium mongolense, Rhizobiaceae

AF003375, Rhizobium yanglingense, Rhizobiaceae

U86343, Rhizobium gallicum, Rhizobiaceae

AF364068, Rhizobium indigoferae, Rhizobiaceae

Y10170, Rhizobium sullae, Rhizobiaceae

AJ639832, Arthrobacter viscosus, Micrococcaceae

AM931436, Rhizobium alamii, Rhizobiaceae

DQ100063, Rhizobium mesosinicum, Rhizobiaceae

EF125187, Rhizobium borbori, Rhizobiaceae

EU056823, Rhizobium oryzae, Rhizobiaceae

DQ454123, Rhizobium pseudoryzae, Rhizobiaceae

EU556969, Rhizobium petrolearium, Rhizobiaceae

EF363715, Rhizobium soli, Rhizobiaceae

D11343, Rhizobium galegae, Rhizobiaceae

GU128881, Rhizobium vignae, Rhizobiaceae

EU074168, Rhizobium alkalisoli, Rhizobiaceae

DQ855276, Rhizobium cellulosilyticum, Rhizobiaceae

AF025852, Rhizobium huautlense, Rhizobiaceae

Aurantimonadaceae (7)

DQ372921, Aureimonas altamirensis, type sp., Aurantimonadaceae

EF373540, Aureimonas frigidaquae, Aurantimonadaceae

AJ786361, Aurantimonas coralicida, type sp., Aurantimonadaceae

U53824, Aurantimonas manganoxydans, Aurantimonadaceae

DQ883810, Aureimonas ureilytica, Aurantimonadaceae

AY178860, Fulvimarina pelagi, type sp., Aurantimonadaceae

AY649762, Martelella mediterranea, type sp., Aurantimonadaceae

Y17047, Rhizobium undicola, Rhizobiaceae

HM776997, Rhizobium taibaishanense, Rhizobiaceae

U45329, Rhizobium vitis, Rhizobiaceae

Z30542, Rhizobium larrymoorei, Rhizobiaceae

FJ969841, Rhizobium pusense, Rhizobiaceae

EU401907, Beijerinckia fluminensis, Beijerinckiaceae

AB247615, Rhizobium radiobacter, Rhizobiaceae

HQ823551, Rhizobium skierniewicense, Rhizobiaceae

X73041, Rhizobium aggregatum, Rhizobiaceae

X73042, Blastobacter capsulatus, Bradyrhizobiaceae

GU322905, Rhizobium halophytocola, Rhizobiaceae

EU781656, Rhizobium rosettiformans, Rhizobiaceae

EF440185, Rhizobium selenitireducens, Rhizobiaceae

AY341343, Rhizobium daejeonense, Rhizobiaceae

U86344, Rhizobium giardinii, Rhizobiaceae

GU565534, Rhizobium herbae, Rhizobiaceae

X68390, Ensifer saheli, Rhizobiaceae

GU593061, Ensifer sojae, Rhizobiaceae

AY034028, Ensifer kummerowiae, Rhizobiaceae

AM181747, Ensifer kostiensis, Rhizobiaceae

X67231, Ensifer fredii, Rhizobiaceae

AF506513, Sinorhizobium americanum, Rhizobiaceae

D14509, Ensifer meliloti, Rhizobiaceae

AY500254, Ensifer numidicus , Rhizobiaceae

L39882, Ensifer medicae, Rhizobiaceae

Z78204, Ensifer arboris, Rhizobiaceae

X68388, Ensifer terangae, Rhizobiaceae

AY500255, Ensifer garamanticus , Rhizobiaceae

DQ411930, Ensifer mexicanus, Rhizobiaceae

AM181733, Ensifer adhaerens, type sp., Rhizobiaceae

GQ241319, Shinella daejeonensis, Rhizobiaceae

AB285481, Shinella yambaruensis, Rhizobiaceae

FM177879, Shinella fusca, Rhizobiaceae

AB187585, Shinella granuli, type sp., Rhizobiaceae

AB238789, Shinella zoogloeoides, Rhizobiaceae

EF070131, Shinella kummerowiae, Rhizobiaceae

Phyllobacteriaceae (52)

AY636000, Phyllobacterium catacumbae, Phyllobacteriaceae

AY785325, Phyllobacterium ifriqiyense, Phyllobacteriaceae

AY786080, Phyllobacterium trifolii, Phyllobacteriaceae

AY785320, Phyllobacterium bourgognense, Phyllobacteriaceae

AY785319, Phyllobacterium brassicacearum, Phyllobacteriaceae

AY785315, Phyllobacterium myrsinacearum, type sp., Phyllobacteriaceae

AJ968695, Phyllobacterium leguminum, Phyllobacteriaceae

U07934, Mesorhizobium ciceri, Phyllobacteriaceae

X67229, Mesorhizobium loti, type sp., Phyllobacteriaceae

EU074203, Mesorhizobium shangrilense, Phyllobacteriaceae

AY601516, Mesorhizobium australicum, Phyllobacteriaceae

AJ011760, Aminobacter aganoensis, Phyllobacteriaceae

AJ011761, Aminobacter niigataensis, Phyllobacteriaceae

AF034798, Aminobacter ciceronei, Phyllobacteriaceae

AJ011759, Aminobacter aminovorans, type sp., Phyllobacteriaceae

AF107722, Aminobacter lissarensis, Phyllobacteriaceae

D88524, Ahrensia kielensis, type sp., Rhodobacteraceae

ABIA02000018, Hoeflea phototrophica, Phyllobacteriaceae

AY598817, Hoeflea marina, type sp., Phyllobacteriaceae

DQ364238, Hoeflea anabaenae, Phyllobacteriaceae

AJ786600, Hoeflea alexandrii, Phyllobacteriaceae

AF534573, Nitratireductor aquibiodomus, type sp., Phyllobacteriaceae

AM498744, Nitratireductor kimnyeongensis, Phyllobacteriaceae

HQ176467, Nitratireductor aquimarinus, Phyllobacteriaceae

EU143347, Nitratireductor basaltis, Phyllobacteriaceae

DQ659453, Nitratireductor pacificus, Phyllobacteriaceae

GU447302, Nitratireductor indicus, Phyllobacteriaceae

EF457243, Chelativorans multitrophicus, type sp., Phyllobacteriaceae

EF457242, Chelativorans oligotrophicus, Phyllobacteriaceae

EU169578, Mesorhizobium alhagi, Phyllobacteriaceae

EU169581, Mesorhizobium camelthorni, Phyllobacteriaceae

D32248, Pseudaminobacter defluvii, Phyllobacteriaceae

AF072542, Pseudaminobacter salicylatoxidans, type sp., Phyllobacteriaceae

Y15403, Aquamicrobium defluvii, type sp., Phyllobacteriaceae

AJ132378, Aquamicrobium lusatiense, Phyllobacteriaceae

FM210786, Aquamicrobium aerolatum, Phyllobacteriaceae

AJ278249, Mesorhizobium chacoense, Phyllobacteriaceae

DQ100066, Mesorhizobium albiziae, Phyllobacteriaceae

EF149003, Mesorhizobium caraganae, Phyllobacteriaceae

EF035058, Mesorhizobium tarimense, Phyllobacteriaceae

EF035064, Mesorhizobium gobiense, Phyllobacteriaceae

AM930381, Mesorhizobium metallidurans, Phyllobacteriaceae

AF041447, Mesorhizobium tianshanense, Phyllobacteriaceae

AM181745, Mesorhizobium mediterraneum, Phyllobacteriaceae

AF508208, Mesorhizobium temperatum, Phyllobacteriaceae

EU849582, Mesorhizobium robiniae, Phyllobacteriaceae

AY601515, Mesorhizobium opportunistum, Phyllobacteriaceae

D13431, Mesorhizobium huakuii, Phyllobacteriaceae

D13431, Mesorhizobium huakuii, Phyllobacteriaceae

AF041442, Mesorhizobium amorphae, Phyllobacteriaceae

AF508207, Mesorhizobium septentrionale, Phyllobacteriaceae

Y14158, Mesorhizobium plurifarium, Phyllobacteriaceae

AJ864462, Mesorhizobium thiogangeticum, Phyllobacteriaceae

D12786, Mycoplana dimorpha, type sp., Brucellaceae

D13944, Mycoplana ramosa, Brucellaceae

Brucellaceae (33)

AM180484, Pseudochrobactrum saccharolyticum, Brucellaceae

FM209496, Pseudochrobactrum lubricantis, Brucellaceae

AM180485, Pseudochrobactrum asaccharolyticum, type sp., Brucellaceae

AM263420, Pseudochrobactrum kiredjianiae, Brucellaceae

AB369864, Paenochrobactrum glaciei, Brucellaceae

FN391023, Paenochrobactrum gallinarii, type sp., Brucellaceae

AJ519939, Ochrobactrum gallinifaecis, Brucellaceae

AM041247, Ochrobactrum oryzae, Brucellaceae

DQ365921, Ochrobactrum pseudintermedium, Brucellaceae

DQ647056, Ochrobactrum ciceri, Brucellaceae

HQ171203, Ochrobactrum daejeonense, Brucellaceae

U70978, Ochrobactrum intermedium, Brucellaceae

EU053207, Brucella inopinata, Brucellaceae

AM392286, Brucella microti, Brucellaceae

AY594216, Brucella neotomae, Brucellaceae

AY594215, Brucella melitensis , type sp., Brucellaceae

L26168, Brucella ovis, Brucellaceae

AM158979, Brucella abortus, Brucellaceae

AM158982, Brucella ceti, Brucellaceae

L37584, Brucella canis, Brucellaceae

AM158980, Brucella suis, Brucellaceae

AM158981, Brucella pinnipedialis, Brucellaceae

AY776289, Ochrobactrum cytisi, Brucellaceae

AY457038, Ochrobactrum lupini, Brucellaceae

AJ242584, Ochrobactrum tritici, Brucellaceae

CP000758, Ochrobactrum anthropi, type sp., Brucellaceae

AM490609, Ochrobactrum pituitosum, Brucellaceae

AM490632, Ochrobactrum rhizosphaerae, Brucellaceae

AM490617, Ochrobactrum thiophenivorans, Brucellaceae

AJ242581, Ochrobactrum grignonense, Brucellaceae

AM422371, Ochrobactrum pseudogrignonense, Brucellaceae

AM422370, Ochrobactrum haematophilum, Brucellaceae

FR668302, Ochrobactrum pecoris, Brucellaceae

Bartonellaceae (24)

AY254309, Bartonella chomelii, Bartonellaceae

AJ278187, Bartonella schoenbuchensis, Bartonellaceae

AF293391, Bartonella bovis, Bartonellaceae

AF293389, Bartonella capreoli, Bartonellaceae

BX897699, Bartonella henselae, Bartonellaceae

AF076237, Bartonella koehlerae, Bartonellaceae

M65249, Bartonella bacilliformis, type sp., Bartonellaceae

M73228, Bartonella quintana, Bartonellaceae

Z31351, Bartonella doshiae, Bartonellaceae

EU111754, Bartonella queenslandensis, Bartonellaceae

EU111749, Bartonella rattaustraliani, Bartonellaceae

L01259, Bartonella vinsonii subsp. vinsonii, Bartonellaceae

EU111759, Bartonella coopersplainsensis, Bartonellaceae

AB440632, Bartonella japonica, Bartonellaceae

AB440636, Bartonella silvatica, Bartonellaceae

L35052, Bartonella vinsonii subsp. berkhoffii, Bartonellaceae

Z31349, Bartonella grahamii, Bartonellaceae

L01260, Bartonella elizabethae, Bartonellaceae

AJ003070, Bartonella tribocorum, Bartonellaceae

AJ002139, Bartonella alsatica, Bartonellaceae

AF204274, Bartonella birtlesii, Bartonellaceae

Z31350, Bartonella taylorii, Bartonellaceae

X89208, Bartonella clarridgeiae, Bartonellaceae

DQ683196, Bartonella rochalimae, Bartonellaceae

EF532794, Daeguia caeni, type sp., Brucellaceae

Cohaesibacteraceae (2)

DQ386307, Cohaesibacter gelatinilyticus, type sp., Cohaesibacteraceae

GQ200200, Cohaesibacter marisflavi, Cohaesibacteraceae

GQ272328, Breoghania corrubedonensis, type sp., Unclassified Alphaproteobacteria

Rhodobiaceae (9)

D30790, Afifella marina, type sp., Rhodobiaceae

AB087720, Rhodopseudomonas julia, Bradyrhizobiaceae

EU445271, Afifella pfennigii, Rhodobiaceae

FR733679, Dichotomicrobium thermohalophilum, type sp., Hyphomicrobiaceae

AM712634, Anderseniella baltica, type sp., Rhodobiaceae

AM180706, Rhodobium gokarnense, Rhodobiaceae

D30792, Rhodobium orientis, type sp., Rhodobiaceae

GU187912, Tepidamorphus gemmatus, type sp., Rhodobiaceae

FN297835, Lutibaculum baratangense, type sp., Rhodobiaceae

FJ560750, Bauldia consociata, Unclassified Rhizobiales

GQ221764, Bauldia litoralis, type sp., Unclassified Rhizobiales

Rhodobacteraceae (229)

AB601471, Roseibacterium elongatum, type sp., Rhodobacteraceae

AB302386, Tranquillimonas alkanivorans, type sp., Rhodobacteraceae

AJ534211, Dinoroseobacter shibae, type sp., Rhodobacteraceae

DQ514326, Maribius pelagius, Rhodobacteraceae

AY906863, Maribius salinus, type sp., Rhodobacteraceae

FJ230842, Hwanghaeicola aestuarii, type sp., Rhodobacteraceae

DQ915443, Maritimibacter alkaliphilus, type sp., Rhodobacteraceae

HM997022, Celeribacter baekdonensis, Rhodobacteraceae

FJ436725, Huaishuia halophila, type sp., Rhodobacteraceae

FJ535354, Celeribacter neptunius, type sp., Rhodobacteraceae

AB564595, Vadicella arenosi, type sp., Rhodobacteraceae

DQ675021, Pseudoruegeria aquimaris, type sp., Rhodobacteraceae

FJ374173, Pseudoruegeria lutimaris, Rhodobacteraceae

AB558927, Pacificibacter maritimus, type sp., Rhodobacteraceae

GQ243422, Roseovarius marinus, Rhodobacteraceae

FJ882052, Planktotalea frisia, type sp., Rhodobacteraceae

JN021667, Litoreibacter meonggei, Rhodobacteraceae

AB518881, Litoreibacter albidus, type sp., Rhodobacteraceae

AB518880, Litoreibacter janthinus, Rhodobacteraceae

EU342372, Litoreibacter arenae, Rhodobacteraceae

AJ631302, Thalassobacter stenotrophicus, type sp., Rhodobacteraceae

AF114484, Roseovarius crassostreae, Rhodobacteraceae

HQ852039, Roseovarius halocynthiae, Rhodobacteraceae

AJ438157, Jannaschia helgolandensis, type sp., Rhodobacteraceae

AJ748747, Jannaschia rubra, Rhodobacteraceae

EU156067, Jannaschia seohaensis, Rhodobacteraceae

AY906862, Jannaschia seosinensis, Rhodobacteraceae

DQ643999, Jannaschia pohangensis, Rhodobacteraceae

EF202612, Jannaschia donghaensis, Rhodobacteraceae

FJ638616, Hasllibacter halocynthiae, type sp., Rhodobacteraceae

EU156066, Roseovarius aestuarii, Rhodobacteraceae

AF098495, Roseovarius nubinhibens, Rhodobacteraceae

AJ534215, Roseovarius mucosus, Rhodobacteraceae

Y11551, Roseovarius tolerans, type sp., Rhodobacteraceae

EF192392, Pelagicola litoralis, type sp., Rhodobacteraceae

FJ403243, Roseovarius nanhaiticus, Rhodobacteraceae

EF202613, Loktanella maricola, Rhodobacteraceae

AY682199, Loktanella rosea, Rhodobacteraceae

DQ533556, Loktanella tamlensis, Rhodobacteraceae

AB576006, Poseidonocella sedimentorum, Rhodobacteraceae

DQ344498, Loktanella koreensis, Rhodobacteraceae

Y13155, Sulfitobacter pontiacus, type sp., Rhodobacteraceae

DQ097527, Sulfitobacter litoralis, Rhodobacteraceae

DQ683726, Sulfitobacter marinus, Rhodobacteraceae

Y16425, Sulfitobacter brevis, Rhodobacteraceae

Y17387, Sulfitobacter mediterraneus, Rhodobacteraceae

AY180103, Sulfitobacter delicatus, Rhodobacteraceae

AY180102, Sulfitobacter dubius, Rhodobacteraceae

AJ550939, Oceanibulbus indolifex, type sp., Rhodobacteraceae

EF202614, Sulfitobacter donghicola, Rhodobacteraceae

Y16427, Sulfitobacter guttiformis, Rhodobacteraceae

L01784, Roseobacter denitrificans, Rhodobacteraceae

X78312, Roseobacter litoralis, type sp., Rhodobacteraceae

FJ436732, Lentibacter algarum, type sp., Rhodobacteraceae

AJ748748, Nereida ignava, type sp., Rhodobacteraceae

AB193438, Tateyamaria omphalii, type sp., Rhodobacteraceae

AJ968651, Tateyamaria pelophila, Rhodobacteraceae

EU734592, Mameliella alba, type sp., Rhodobacteraceae

U58356, Sagittula stellata, type sp., Rhodobacteraceae

Y11552, Antarctobacter heliothermus, type sp., Rhodobacteraceae

EF211829, Ponticoccus litoralis, type sp., Rhodobacteraceae

AB302370, Tropicibacter naphthalenivorans, type sp., Rhodobacteraceae

FR727679, Tropicibacter multivorans, Rhodobacteraceae

U14583, Octadecabacter antarcticus, Rhodobacteraceae

U73725, Octadecabacter arcticus, type sp., Rhodobacteraceae

HM748766, Thalassobius maritimus, Rhodobacteraceae

AB246747, Loktanella atrilutea, Rhodobacteraceae

AJ582225, Loktanella fryxellensis, Rhodobacteraceae

AJ440997, Loktanella salsilacus, type sp., Rhodobacteraceae

AY600300, Loktanella hongkongensis, Rhodobacteraceae

AM983542, Loktanella pyoseonensis, Rhodobacteraceae

AY682198, Loktanella agnita, Rhodobacteraceae

AJ582226, Loktanella vestfoldensis, Rhodobacteraceae

EU221274, Seohaeicola saemankumensis, type sp., Rhodobacteraceae

GQ232737, Litorimicrobium taeanense, type sp., Rhodobacteraceae

FJ232451, Leisingera nanhaiensis, Rhodobacteraceae

DQ514304, Phaeobacter arcticus, Rhodobacteraceae

AY177712, Phaeobacter inhibens, Rhodobacteraceae

Y13244, Phaeobacter gallaeciensis, type sp., Rhodobacteraceae

D88526, Ruegeria atlantica, type sp., Rhodobacteraceae

U77644, Silicibacter lacuscaerulensis, type sp., Rhodobacteraceae

AF098491, Silicibacter pomeroyi, Rhodobacteraceae

AB255401, Ruegeria mobilis, Rhodobacteraceae

AM905330, Ruegeria scottomollicae, Rhodobacteraceae

GU057915, Ruegeria faecimaris, Rhodobacteraceae

HQ852038, Ruegeria halocynthiae, Rhodobacteraceae

FJ265707, Salinihabitans flavidus, type sp., Rhodobacteraceae

EU878003, Sediminimonas qiaohouensis, type sp., Rhodobacteraceae

AY962292, Shimia marina, type sp., Rhodobacteraceae

FJ976449, Shimia isoporae, Rhodobacteraceae

AM904562, Nautella italica, type sp., Rhodobacteraceae

AM900415, Leisingera aquimarina, Rhodobacteraceae

AY005463, Leisingera methylohalidivorans, type sp., Rhodobacteraceae

AM943630, Phaeobacter caeruleus, Rhodobacteraceae

DQ981486, Phaeobacter daeponensis, Rhodobacteraceae

X78315, Marinovum algicola, type sp., Rhodobacteraceae

AY442178, Thalassobius aestuarii, Rhodobacteraceae

AJ878874, Thalassobius mediterraneus, type sp., Rhodobacteraceae

D88523, Thalassobius gelatinovorus, Rhodobacteraceae

DQ397336, Thalassococcus halodurans, type sp., Rhodobacteraceae

EU928765, Citreicella marina, Rhodobacteraceae

AY639887, Citreicella thiooxidans, type sp., Rhodobacteraceae

FJ230833, Citreicella aestuarii, Rhodobacteraceae

AY926462, Palleronia marisminoris, type sp., Rhodobacteraceae

AY527274, Salipiger mucosus, type sp., Rhodobacteraceae

DQ178660, Pelagibaca bermudensis, type sp., Rhodobacteraceae

AB550558, Primorskyibacter sedentarius, type sp., Rhodobacteraceae

EU512919, Marivita cryptomonadis, type sp., Rhodobacteraceae

JF260872, Marivita hallyeonensis, Rhodobacteraceae

EU512918, Marivita litorea, Rhodobacteraceae

FJ467624, Marivita byunsanensis, type sp., Rhodobacteraceae

AY424898, Oceanicola batsensis, Rhodobacteraceae

DQ414420, Oceanicola nanhaiensis, Rhodobacteraceae

EU581832, Oceanicola nitratireducens, Rhodobacteraceae

DQ822569, Oceanicola marinus, Rhodobacteraceae

AJ505788, Pontibaca methylaminivorans, type sp., Rhodobacteraceae

DQ667965, Donghicola eburneus, type sp., Rhodobacteraceae

AB302379, Tropicimonas isoalkanivorans, type sp., Rhodobacteraceae

HQ340608, Tropicimonas aquimaris, Rhodobacteraceae

EU336981, Lutimaribacter saemankumensis, type sp., Rhodobacteraceae

DQ659449, Oceanicola pacificus, Rhodobacteraceae

FJ872535, Ruegeria marina, Rhodobacteraceae

AY962295, Citreimonas salinaria, type sp., Rhodobacteraceae

DQ120728, Donghicola xiamenensis, Rhodobacteraceae

EU431217, Roseovarius halotolerans, Rhodobacteraceae

DQ120726, Roseovarius pacificus, Rhodobacteraceae

EU742628, Roseovarius indicus, Rhodobacteraceae

D85829, Roseivivax halodurans, type sp., Rhodobacteraceae

D85831, Roseivivax halotolerans, Rhodobacteraceae

FJ593905, Roseivivax isoporae, Rhodobacteraceae

HQ615878, Roseivivax sediminis, Rhodobacteraceae

FJ875966, Roseivivax lentus, Rhodobacteraceae

AJ877265, Yangia pacifica, type sp., Rhodobacteraceae

AB576005, Poseidonocella pacifica, type sp., Rhodobacteraceae

AF136850, Ketogulonicigenium robustum, Rhodobacteraceae

AF136849, Ketogulonicigenium vulgare, type sp., Rhodobacteraceae

AY424896, Oceanicola granulosus, type sp., Rhodobacteraceae

AJ605747, Roseisalinus antarcticus, type sp., Rhodobacteraceae

AJ605747, Roseisalinus antarcticus, type sp., Rhodobacteraceae

EU338486, Rubellimicrobium aerolatum, Rhodobacteraceae

EF547368, Rubellimicrobium mesophilum, Rhodobacteraceae

AJ844281, Rubellimicrobium thermophilum, type sp., Rhodobacteraceae

DQ640643, Wenxinia marina, type sp., Rhodobacteraceae

AJ315682, Roseicyclus mahoneyensis, type sp., Rhodobacteraceae

AJ864469, Paracoccus bengalensis, Rhodobacteraceae

Y16933, Paracoccus pantotrophus, Rhodobacteraceae

AY014174, Paracoccus versutus, Rhodobacteraceae

AF250334, Paracoccus methylutens, Rhodobacteraceae

DQ512861, Paracoccus sulfuroxidans, Rhodobacteraceae

DQ423482, Paracoccus halophilus, Rhodobacteraceae

GU129567, Paracoccus sphaerophysae, Rhodobacteraceae

AB185957, Paracoccus marinus, Rhodobacteraceae

Y13827, Paracoccus alkenifer, Rhodobacteraceae

AY014175, Paracoccus solventivorans, Rhodobacteraceae

D32241, Paracoccus kocurii, Rhodobacteraceae

AB187584, Paracoccus koreensis, Rhodobacteraceae

FJ842690, Paracoccus niistensis, Rhodobacteraceae

EU660389, Paracoccus chinensis, Rhodobacteraceae

AY014177, Paracoccus alcaliphilus, Rhodobacteraceae

GQ281379, Paracoccus stylophorae, Rhodobacteraceae

D32240, Paracoccus aminovorans, Rhodobacteraceae

AY014176, Paracoccus aminophilus, Rhodobacteraceae

Y16927, Paracoccus denitrificans, type sp., Rhodobacteraceae

D32242, Paracoccus thiocyanatus, Rhodobacteraceae

AY014173, Paracoccus yeei, Rhodobacteraceae

AF250332, Paracoccus kondratievae, Rhodobacteraceae

GQ250442, Paracoccus caeni, Rhodobacteraceae

AF461158, Paracoccus zeaxanthinifaciens, Rhodobacteraceae

DQ342239, Paracoccus homiensis, Rhodobacteraceae

FJ593906, Paracoccus isoporae, Rhodobacteraceae

GQ260189, Paracoccus fistulariae, Rhodobacteraceae

DQ923133, Paracoccus saliphilus, Rhodobacteraceae

AF030436, Methylarcula marina, type sp., Rhodobacteraceae

AF030437, Methylarcula terricola, Rhodobacteraceae

AB006899, Paracoccus carotinifaciens, Rhodobacteraceae

Y12703, Paracoccus marcusii, Rhodobacteraceae

AY189743, Paracoccus haeundaensis, Rhodobacteraceae

AJ428275, Paracoccus seriniphilus, Rhodobacteraceae

EF660757, Paracoccus aestuarii, Rhodobacteraceae

AM408117, Rhodobacter vinaykumarii, Rhodobacteraceae

D88522, Pseudorhodobacter ferrugineus, type sp., Rhodobacteraceae

GU086365, Pseudorhodobacter aquimaris, Rhodobacteraceae

AM690348, Rhodobacter ovatus, Rhodobacteraceae

D70846, Rhodobacter azotoformans, Rhodobacteraceae

AM398152, Rhodobacter johrii, Rhodobacteraceae

AM421024, Rhodobacter megalophilus, Rhodobacteraceae

X53853, Rhodobacter sphaeroides, Rhodobacteraceae

EU289803, Catellibacterium nanjingense, Rhodobacteraceae

FJ386516, Catellibacterium caeni, Rhodobacteraceae

EU313813, Catellibacterium aquatile, Rhodobacteraceae

FR733676, Gemmobacter aquatilis, type sp., Rhodobacteraceae

AM399030, Catellibacterium changlense, Rhodobacteraceae

AB101543, Catellibacterium nectariphilum, type sp., Rhodobacteraceae

DQ342322, Rhodobacter blasticus, Rhodobacteraceae

D16428, Rhodobacter capsulatus, type sp., Rhodobacteraceae

AF452106, Haematobacter massiliensis, Rhodobacteraceae

DQ342315, Haematobacter missouriensis, type sp., Rhodobacteraceae

AM748926, Rhodobacter aestuarii, Rhodobacteraceae

AM745438, Rhodobacter maris, Rhodobacteraceae

AY656719, Thioclava pacifica, type sp., Rhodobacteraceae

EF554833, Rhodobaca barguzinensis, Rhodobacteraceae

AF248638, Rhodobaca bogoriensis, type sp., Rhodobacteraceae

AJ605746, Roseibaca ekhonensis, type sp., Rhodobacteraceae

DQ659236, Roseinatronobacter monicus, Rhodobacteraceae

AF249749, Roseinatronobacter thiooxidans, type sp., Rhodobacteraceae

FJ196006, Roseicitreum antarcticum, type sp., Rhodobacteraceae

D16421, Rhodobacter veldkampii, Rhodobacteraceae

D16418, Rhodovulum adriaticum, Rhodobacteraceae

Y15012, Rhodovulum robiginosum, Rhodobacteraceae

FN669139, Rhodovulum phaeolacus, Rhodobacteraceae

AM180953, Rhodovulum imhoffii, Rhodobacteraceae

Y15011, Rhodovulum iodosum, Rhodobacteraceae

AJ891122, Rhodovulum marinum, Rhodobacteraceae

AM748927, Rhodovulum kholense, Rhodobacteraceae

AM180707, Rhodovulum visakhapatnamense, Rhodobacteraceae

D16423, Rhodovulum sulfidophilum, type sp., Rhodobacteraceae

EU287912, Jhaorihella thermophila, type sp., Rhodobacteraceae

EU741680, Rhodovulum steppense, Rhodobacteraceae

D16419, Rhodovulum strictum, Rhodobacteraceae

AM921780, Rhodovulum lacipunicei, Rhodobacteraceae

D16426, Rhodovulum euryhalinum, Rhodobacteraceae

AF465833, Albidovulum inexpectatum, type sp., Rhodobacteraceae

HQ709061, Albidovulum xiamenense, Rhodobacteraceae

DQ280370, Albimonas donghaensis, type sp., Rhodobacteraceae

U88042, Amaricoccus macauensis, Rhodobacteraceae

U88043, Amaricoccus veronensis, Rhodobacteraceae

U88044, Amaricoccus tamworthensis, Rhodobacteraceae

U88041, Amaricoccus kaplicensis, type sp., Rhodobacteraceae

D85834, Rubrimonas cliftonensis, type sp., Rhodobacteraceae

EU857676, Rubribacterium polymorphum, Rhodobacteraceae

AY387398, Parvibaculum lavamentivorans, type sp., Rhodobiaceae

FJ182044, Parvibaculum indicum, Rhodobiaceae

Hyphomonadaceae (24)

FJ230835, Henriciella litoralis, Hyphomonadaceae

EF660760, Henriciella marina, type sp., Hyphomonadaceae

EU819081, Henriciella aquimarina, Hyphomonadaceae

FM202497, Ponticaulis koreensis, type sp., Hyphomonadaceae

CP000158, Hyphomonas neptunium , Hyphomonadaceae

AF082795, Hyphomonas rosenbergii, Hyphomonadaceae

AF082794, Hyphomonas hirschiana, Hyphomonadaceae

AJ227813, Hyphomonas polymorpha, type sp., Hyphomonadaceae

AF082797, Hyphomonas oceanitis, Hyphomonadaceae

AF082791, Hyphomonas johnsonii, Hyphomonadaceae

AF082790, Hyphomonas adhaerens, Hyphomonadaceae

AJ227814, Hyphomonas jannaschiana, Hyphomonadaceae

AJ421782, Hirschia baltica, type sp., Hyphomonadaceae

FM202386, Hirschia maritima, Hyphomonadaceae

AY576758, Hellea balneolensis, type sp., Hyphomonadaceae

FJ230838, Litorimonas taeanensis, type sp., Hyphomonadaceae

EF495229, Robiginitomaculum antarcticum, type sp., Hyphomonadaceae

AJ227806, Maricaulis salignorans, Hyphomonadaceae

AJ227804, Maricaulis washingtonensis, Hyphomonadaceae

AJ227802, Maricaulis maris, type sp., Hyphomonadaceae

AJ227808, Maricaulis parjimensis, Hyphomonadaceae

AJ301667, Maricaulis virginensis, Hyphomonadaceae

AJ309862, Oceanicaulis alexandrii, type sp., Hyphomonadaceae

AJ578476, Woodsholea maritima, type sp., Hyphomonadaceae

Parvularculales (2)

AF544015, Parvularcula bermudensis, type sp., Parvularculaceae

EU346850, Parvularcula lutaonensis, Parvularculaceae

AB617575, Rhodoligotrophos appendicifer, type sp., Rhodobiaceae

Sphingomonadales (160)

Sphingomonadaceae (134)

EU707560, Sphingomonas oryziterrae, Sphingomonadaceae

EU564841, Sphingomicrobium lutaoense, type sp., Sphingomonadaceae

AB264131, Sphingomonas jaspsi, Sphingomonadaceae

AB277583, Sphingomonas astaxanthinifaciens, Sphingomonadaceae

AY769083, Sphingomonas kaistensis, Sphingomonadaceae

Y10678, Sandaracinobacter sibiricus, type sp., Sphingomonadaceae

AY902680, Sandarakinorhabdus limnophila, type sp., Sphingomonadaceae

EU682685, Sphingomonas changbaiensis, Sphingomonadaceae

HQ224549, Sphingomonas jejuensis, Sphingomonadaceae

AB018439, Sphingomonas oligophenolica, Sphingomonadaceae

AB021370, Sphingomonas echinoides, Sphingomonadaceae

GQ253122, Sphingomonas glacialis, Sphingomonadaceae

GQ161989, Sphingomonas alpina, Sphingomonadaceae

AJ575817, Sphingomonas abaci, Sphingomonadaceae

EU707561, Sphingomonas jinjuensis, Sphingomonadaceae

AJ227812, Sphingomonas leidyi, Caulobacteraceae

AF131295, Sphingomonas aquatilis, Sphingomonadaceae

AB055863, Sphingomonas melonis, Sphingomonadaceae

AJ429236, Sphingomonas aurantiaca, Sphingomonadaceae

AJ429239, Sphingomonas faeni, Sphingomonadaceae

AJ429240, Sphingomonas aerolata, Sphingomonadaceae

FJ834325, Sphingomonas rubra, Sphingomonadaceae

EF363714, Sphingomonas insulae, Sphingomonadaceae

Y09637, Sphingomonas pruni, Sphingomonadaceae

Y09638, Sphingomonas mali, Sphingomonadaceae

EF660755, Sphingomonas aestuarii, Sphingomonadaceae

AB166883, Sphingomonas soli, Sphingomonadaceae

Y09639, Sphingomonas asaccharolytica, Sphingomonadaceae

DQ178975, Sphingomonas dokdonensis, Sphingomonadaceae

AM229669, Sphingomonas mucosissima, Sphingomonadaceae

AF131296, Sphingomonas koreensis, Sphingomonadaceae

AB033947, Sphingomonas azotifigens, Sphingomonadaceae

X97776, Sphingomonas trueperi, Sphingomonadaceae

AJ243751, Sphingomonas pituitosa, Sphingomonadaceae

AB428568, Sphingomonas japonica, Sphingomonadaceae

FJ754464, Sphingomonas xinjiangensis, Sphingomonadaceae

AY453855, Sphingomonas phyllosphaerae, Sphingomonadaceae

HM629444, Sphingomonas endophytica, Sphingomonadaceae

AY894691, Sphingomonas yunnanensis, Sphingomonadaceae

HM204925, Sphingomonas ginsenosidimutans, Sphingomonadaceae

EF467848, Sphingomonas polyaromaticivorans, Sphingomonadaceae

U37337, Sphingomonas paucimobilis, type sp., Sphingomonadaceae

D84529, Sphingomonas sanguinis, Sphingomonadaceae

AM412238, Sphingomonas pseudosanguinis, Sphingomonadaceae

D84520, Sphingomonas roseiflava, Sphingomonadaceae

AB071955, Sphingomonas yabuuchiae, Sphingomonadaceae

D13724, Sphingomonas parapaucimobilis, Sphingomonadaceae

AJ871435, Sphingomonas desiccabilis, Sphingomonadaceae

AB248285, Sphingomonas molluscorum, Sphingomonadaceae

AJ575818, Sphingomonas panni, Sphingomonadaceae

FJ194436, Sphingomonas hankookensis, Sphingomonadaceae

DQ789172, Sphingomonas sanxanigenens, Sphingomonadaceae

AJ009706, Sphingomonas fennica, Sphingomonadaceae

HM193517, Sphingomonas formosensis, Sphingomonadaceae

EF530202, Sphingomonas histidinilytica, Sphingomonadaceae

AB021492, Sphingomonas wittichii, Sphingomonadaceae

X94101, Sphingomonas haloaromaticamans, Sphingomonadaceae

AF281032, Zymomonas mobilis subsp. pomaceae, Sphingomonadaceae

AF281031, Zymomonas mobilis subsp. mobilis, type sp., Sphingomonadaceae

EU581829, Stakelama pacifica, type sp., Sphingomonadaceae

AB084247, Sphingosinicella microcystinivorans, type sp., Sphingomonadaceae

AY950663, Sphingosinicella xenopeptidilytica, Sphingomonadaceae

DQ087403, Sphingosinicella soli, Sphingomonadaceae

FJ442859, Sphingosinicella vermicomposti , Sphingomonadaceae

EF465534, Sphingobium rhizovicinum, Sphingomonadaceae

EF534725, Sphingobium lucknowense, Sphingomonadaceae

AY519129, Sphingobium indicum, Sphingomonadaceae

EF190507, Sphingobium chinhatense, Sphingomonadaceae

AY519130, Sphingobium francense, Sphingomonadaceae

AF039168, Sphingobium japonicum, Sphingomonadaceae

AF159257, Sphingobium chungbukense, Sphingomonadaceae

X87161, Sphingomonas chlorophenolica, Sphingomonadaceae

AM998824, Sphingobium vermicomposti, Sphingomonadaceae

DQ092757, Sphingobium fuliginis, Sphingomonadaceae

AB022428, Sphingomonas herbicidovorans, Sphingomonadaceae

EU781657, Sphingobium quisquiliarum, Sphingomonadaceae

AB047364, Sphingobium amiense, Sphingomonadaceae

EU009209, Sphingobium scionense, Sphingomonadaceae

D13728, Sphingomonas yanoikuyae, Sphingomonadaceae

AB040739, Sphingobium cloacae, Sphingomonadaceae

EF207155, Sphingobium ummariense, Sphingomonadaceae

FJ373058, Sphingobium faniae, Sphingomonadaceae

FJ686047, Sphingobium wenxiniae, Sphingomonadaceae

AB021416, Sphingobium abikonense, Sphingomonadaceae

EU675846, Sphingobium lactosutens, Sphingomonadaceae

AM489507, Sphingobium olei, Sphingomonadaceae

AM181012, Sphingobium aromaticiconvertens, Sphingomonadaceae

X94098, Sphingobium xenophagum, Sphingomonadaceae

EU095328, Sphingobium qiguonii, Sphingomonadaceae

HM748834, Sphingobium jiangsuense, Sphingomonadaceae

FJ177535, Sphingobium vulgare, Sphingomonadaceae

D13737, Sphingomonas suberifaciens, Sphingomonadaceae

AB024288, Blastomonas natatoria, type sp., Sphingomonadaceae

AB024289, Sphingomonas ursincola, Sphingomonadaceae

AJ303009, Novosphingobium lentum, Sphingomonadaceae

AB070237, Novosphingobium tardaugens, Sphingomonadaceae

AJ416411, Novosphingobium hassiacum, Sphingomonadaceae

DQ448852, Novosphingobium nitrogenifigens, Sphingomonadaceae

AB025013, Sphingomonas stygia, Sphingomonadaceae

AB025013, Sphingomonas stygia, Sphingomonadaceae

AY500142, Novosphingobium taihuense, Sphingomonadaceae

CP000248, Sphingomonas aromaticivorans, Sphingomonadaceae

AB025014, Sphingomonas subterranea, Sphingomonadaceae

D16147, Sphingomonas capsulata, Sphingomonadaceae

EU336977, Novosphingobium acidiphilum, Sphingomonadaceae

D13945, Sphingomonas rosa, Sphingomonadaceae

FJ177534, Novosphingobium sediminicola, Sphingomonadaceae

AB177883, Novosphingobium naphthalenivorans, Sphingomonadaceae

EF029110, Novosphingobium resinovorum, Sphingomonadaceae

FJ425737, Novosphingobium soli, Sphingomonadaceae

D13727, Sphingomonas terrae, Sphingomonadaceae

EF424391, Sphingopyxis ummariensis, Sphingomonadaceae

D13722, Sphingomonas adhaesiva, Sphingomonadaceae

AY563034, Sphingopyxis granuli, Sphingomonadaceae

EU075217, Sphingopyxis panaciterrulae, Sphingomonadaceae

AJ416410, Sphingopyxis witflariensis, Sphingomonadaceae

AB245353, Sphingopyxis panaciterrae, Sphingomonadaceae

AF367204, Sphingopyxis chilensis, Sphingomonadaceae

GQ131578, Sphingopyxis bauzanensis, Sphingomonadaceae

FJ599671, Sphingopyxis soli, Sphingomonadaceae

AF131297, Sphingopyxis taejonensis, Sphingomonadaceae

AB245343, Sphingopyxis ginsengisoli, Sphingomonadaceae

D13723, Sphingomonas macrogoltabidus, Sphingomonadaceae

Z73631, Sphingopyxis alaskensis, Sphingomonadaceae

DQ781321, Sphingopyxis litoris, Sphingomonadaceae

DQ781320, Sphingopyxis marina, Sphingomonadaceae

AY554010, Sphingopyxis flavimaris, Sphingomonadaceae

AY608604, Sphingopyxis baekryungensis, Sphingomonadaceae

HM028673, Altererythrobacter xinjiangensis, Erythrobacteraceae

GU166344, Altererythrobacter dongtanensis, Erythrobacteraceae

EF623998, Croceicoccus marinus, type sp., Erythrobacteraceae

AF502400, Novosphingobium pentaromativorans, Sphingomonadaceae

EF424403, Novosphingobium mathurense, Sphingomonadaceae

EF424402, Novosphingobium panipatense, Sphingomonadaceae

EF549586, Novosphingobium indicum, Sphingomonadaceae

Erythrobacteraceae (24)

AY562219, Erythrobacter seohaensis, Erythrobacteraceae

EU428782, Erythrobacter gangjinensis, Erythrobacteraceae

AF118020, Erythrobacter citreus, Erythrobacteraceae

HQ203045, Erythrobacter pelagi, Erythrobacteraceae

AY461441, Erythrobacter aquimaris, Erythrobacteraceae

AF465835, Erythrobacter longus, type sp., Erythrobacteraceae

FJ654473, Erythrobacter nanhaisediminis, Erythrobacteraceae

AY706935, Erythrobacter vulgaris, Erythrobacteraceae

AF500004, Erythrobacter flavus, Erythrobacteraceae

AY562220, Erythrobacter gaetbuli, Erythrobacteraceae

AB021493, Porphyrobacter sanguineus, Erythrobacteraceae

AB033328, Porphyrobacter tepidarius, Erythrobacteraceae

AB033327, Porphyrobacter neustonensis, type sp., Erythrobacteraceae

AF465834, Porphyrobacter cryptus, Erythrobacteraceae

DQ011529, Porphyrobacter dokdonensis, Erythrobacteraceae

AY559428, Porphyrobacter donghaensis, Erythrobacteraceae

AF465837, Erythromicrobium ramosum, type sp., Erythrobacteraceae

AF465836, Erythrobacter litoralis, Erythrobacteraceae

EU726272, Altererythrobacter marinus, Erythrobacteraceae

FM177586, Altererythrobacter marensis, Erythrobacteraceae

DQ399262, Altererythrobacter indicus, Erythrobacteraceae

AB363004, Altererythrobacter ishigakiensis, Erythrobacteraceae

AY739662, Altererythrobacter luteolus, Erythrobacteraceae

DQ304436, Altererythrobacter epoxidivorans, type sp., Erythrobacteraceae

FJ997597, Altererythrobacter aestuarii, Erythrobacteraceae

FJ935793, Altererythrobacter namhicola, Erythrobacteraceae

Kordiimonadales (2)

AY682384, Kordiimonas gwangyangensis, type sp., Kordiimonadaceae

FJ847942, Kordiimonas lacus, Kordiimonadaceae

D14431, Rhodothalassium salexigens, type sp., Rhodobacteraceae

Sneathiellales (2)

DQ219355, Sneathiella chinensis, type sp., Sneathiellaceae

AB289439, Sneathiella glossodoripedis, Sneathiellaceae

Rickettsiales (27)

Rickettsiaceae (20)

U17645, Rickettsia honei, Rickettsiaceae

L36217, Rickettsia rickettsii, Rickettsiaceae

D38628, Rickettsia sibirica, Rickettsiaceae

AF541999, Rickettsia conorii, Rickettsiaceae

L36673, Rickettsia parkeri, Rickettsiaceae

AF178037, Rickettsia heilongjiangensis, Rickettsiaceae

DQ365810, Rickettsia raoultii, Rickettsiaceae

AF394906, Rickettsia asiatica, Rickettsiaceae

U74757, Rickettsia aeschlimannii, Rickettsiaceae

L36216, Rickettsia rhipicephali, Rickettsiaceae

L36215, Rickettsia montanensis, Rickettsiaceae

AY049981, Rickettsia tamurae, Rickettsiaceae

L36214, Rickettsia massiliae, Rickettsiaceae

M21789, Rickettsia prowazekii, type sp., Rickettsiaceae

U12463, Rickettsia typhi, Rickettsiaceae

L36099, Rickettsia akari , Rickettsiaceae

L36101, Rickettsia australis, Rickettsiaceae

L36104, Rickettsia canadensis, Rickettsiaceae

L36103, Rickettsia bellii, Rickettsiaceae

D38623, Orientia tsutsugamushi, type sp., Rickettsiaceae

Anaplasmataceae (7)

M73222, Ehrlichia chaffeensis, Anaplasmataceae

U15527, Ehrlichia muris, Anaplasmataceae

M73227, Ehrlichia ewingii, Anaplasmataceae

X61659, Ehrlichia ruminantium, Anaplasmataceae

U02521, Anaplasma phagocytophilum, Anaplasmataceae

M21290, Neorickettsia risticii, Anaplasmataceae

M73219, Neorickettsia sennetsu, Anaplasmataceae

Rhodospirillaceae (23)

AM283537, Roseospira goensis, Rhodospirillaceae

AJ298879, Roseospira marina, Rhodospirillaceae

AM282560, Roseospira visakhapatnamensis, Rhodospirillaceae

AJ298880, Roseospira navarrensis, Rhodospirillaceae

X99671, Rhodospira trueperi, type sp., Rhodospirillaceae

AJ222662, Rhodospirillum photometricum, Rhodospirillaceae

AM710622, Rhodospirillum sulfurexigens, Rhodospirillaceae

CP000230, Rhodospirillum rubrum, type sp., Rhodospirillaceae

FN391894, Phaeovibrio sulfidiphilus, type sp., Rhodospirillaceae

AY189753, Thalassospira xiamenensis, Rhodospirillaceae

EU017546, Thalassospira xianhensis, Rhodospirillaceae

AF358664, Thalassospira lucentensis, type sp., Rhodospirillaceae

AY186195, Thalassospira profundimaris, Rhodospirillaceae

AB265822, Thalassospira tepidiphila, Rhodospirillaceae

AB006768, Terasakiella pusilla, type sp., Methylocystaceae

EF612767, Insolitispirillum peregrinum subsp. peregrinum, type sp., Rhodospirillaceae

EF612768, Insolitispirillum peregrinum subsp. integrum, Rhodospirillaceae

EU642410, Marispirillum indicum, type sp., Rhodospirillaceae

AB074520, Novispirillum itersonii subsp. nipponicum, Rhodospirillaceae

EF612765, Novispirillum itersonii subsp. itersonii, type sp., Rhodospirillaceae

EF100694, Caenispirillum bisanense, type sp., Rhodospirillaceae

FN995238, Caenispirillum salinarum, Rhodospirillaceae

AJ011919, Roseospirillum parvum, type sp., Rhodobiaceae

D14432, Rhodovibrio salinarum, type sp., Rhodospirillaceae

FR733704, Rhodovibrio sodomensis, Rhodospirillaceae

FJ357426, Fodinicurvata sediminis, type sp., Rhodospirillaceae

FJ357427, Fodinicurvata fenggangensis, Rhodospirillaceae

EU728658, Tistlia consotensis, type sp., Rhodospirillaceae

DQ401091, Pelagibius litoralis, type sp., Rhodospirillaceae

AM749667, Kiloniella laminariae, type sp., Kiloniellaceae

AB071665, Tistrella mobilis, type sp., Rhodospirillaceae

GQ240228, Tistrella bauzanensis, Rhodospirillaceae

Acetobacteraceae (109)

AB602333, Acetobacter farinalis, Acetobacteraceae

AB032350, Acetobacter orleanensis, Acetobacteraceae

AJ419844, Acetobacter malorum, Acetobacteraceae

AJ419843, Acetobacter cerevisiae, Acetobacteraceae

AY883036, Acetobacter senegalensis, Acetobacteraceae

AB032355, Acetobacter tropicalis, Acetobacteraceae

AB052710, Acetobacter cibinongensis, Acetobacteraceae

AB052706, Acetobacter orientalis, Acetobacteraceae

AB032356, Acetobacter indonesiensis, Acetobacteraceae

X74066, Acetobacter aceti, type sp., Acetobacteraceae

AY669513, Acetobacter nitrogenifigens, Acetobacteraceae

AY829472, Acetobacter oeni, Acetobacteraceae

AJ419838, Acetobacter estunensis, Acetobacteraceae

AM905849, Acetobacter fabarum, Acetobacteraceae

AB032351, Acetobacter lovaniensis, Acetobacteraceae

EF030713, Acetobacter ghanensis, Acetobacteraceae

AB052712, Acetobacter syzygii, Acetobacteraceae

X71863, Acetobacter pasteurianus subsp. pasteurianus, Acetobacteraceae

GU205100, Acetobacter pasteurianus subsp. paradoxus, Acetobacteraceae

AJ419835, Acetobacter pomorum, Acetobacteraceae

AB032352, Acetobacter peroxydans, Acetobacteraceae

AB178392, Gluconobacter albidus, Acetobacteraceae

AB178431, Gluconobacter sphaericus, Acetobacteraceae

AB459530, Gluconobacter kanchanaburiensis, Acetobacteraceae

AB178405, Gluconobacter kondonii, Acetobacteraceae

X73820, Gluconobacter oxydans, type sp., Acetobacteraceae

AB178429, Gluconobacter roseus, Acetobacteraceae

AB193244, Gluconobacter uchimurae, Acetobacteraceae

X82290, Gluconobacter frateurii, Acetobacteraceae

AB511060, Gluconobacter wancherniae, Acetobacteraceae

AB253435, Gluconobacter japonicus, Acetobacteraceae

AB128050, Gluconobacter thailandicus, Acetobacteraceae

AB540148, Gluconobacter nephelii, Acetobacteraceae

AB178406, Gluconobacter cerinus, Acetobacteraceae

AB513363, Neokomagataea thailandica, type sp., Acetobacteraceae

AB513364, Neokomagataea tanensis, Acetobacteraceae

AB110421, Saccharibacter floricola, type sp., Acetobacteraceae

AB303366, Ameyamaea chiangmaiensis, type sp., Acetobacteraceae

AB304087, Tanticharoenia sakaeratensis, type sp., Acetobacteraceae

AB485740, Asaia astilbis, Acetobacteraceae

AB485741, Asaia prunellae, Acetobacteraceae

AB485739, Asaia platycodi, Acetobacteraceae

AB511277, Asaia spathodeae, Acetobacteraceae

AB035416, Asaia siamensis, Acetobacteraceae

AB025928, Asaia bogorensis, type sp., Acetobacteraceae

AB102953, Asaia krungthepensis, Acetobacteraceae

AB286050, Asaia lannensis, Acetobacteraceae

AF459454, Swaminathania salitolerans, type sp., Acetobacteraceae

AB056321, Kozakia baliensis, type sp., Acetobacteraceae

AB208549, Neoasaia chiangmaiensis, type sp., Acetobacteraceae

X77468, Acidomonas methanolica, type sp., Acetobacteraceae

X75617, Gluconacetobacter liquefaciens, type sp., Acetobacteraceae

AF127407, Gluconacetobacter sacchari, Acetobacteraceae

AB627116, Gluconacetobacter tumulicola, Acetobacteraceae

AB627120, Gluconacetobacter asukensis, Acetobacteraceae

X75618, Gluconacetobacter diazotrophicus, Acetobacteraceae

AF192761, Gluconacetobacter azotocaptans, Acetobacteraceae

AF111841, Gluconacetobacter johannae, Acetobacteraceae

AB205221, Gluconacetobacter oboediens, Acetobacteraceae

AY180961, Gluconacetobacter rhaeticus, Acetobacteraceae

Y14694, Gluconacetobacter intermedius, Acetobacteraceae

AB607833, Gluconacetobacter kakiaceti, Acetobacteraceae

AB166743, Gluconacetobacter nataicola, Acetobacteraceae

Z21936, Gluconacetobacter europaeus, Acetobacteraceae

AY180960, Gluconacetobacter swingsii, Acetobacteraceae

AJ012466, Gluconacetobacter saccharivorans, Acetobacteraceae

AJ007698, Gluconacetobacter sucrofermentans, Acetobacteraceae

X75619, Gluconacetobacter xylinus, Acetobacteraceae

X75620, Gluconacetobacter hansenii, Acetobacteraceae

AY688433, Gluconacetobacter kombuchae, Acetobacteraceae

AJ251110, Gluconacetobacter entanii, Acetobacteraceae

AY788950, Granulibacter bethesdensis, type sp., Acetobacteraceae

D86513, Rhodopila globiformis, type sp., Acetobacteraceae

D30772, Acidiphilium angustum, Acetobacteraceae

D30776, Acidiphilium rubrum, Acetobacteraceae

D86511, Acidiphilium acidophilum, Acetobacteraceae

D30773, Acidiphilium cryptum, type sp., Acetobacteraceae

D30775, Acidiphilium organovorum, Acetobacteraceae

AB006711, Acidiphilium multivorum, Acetobacteraceae

AB362219, Acidocella aluminiidurans, Acetobacteraceae

D30774, Acidocella facilis, type sp., Acetobacteraceae

D30771, Acidocella aminolytica, Acetobacteraceae

AM947653, Acidisoma sibiricum, Acetobacteraceae

AM947652, Acidisoma tundrae, type sp., Acetobacteraceae

AM947652, Acidisoma tundrae, type sp., Acetobacteraceae

AY140238, Acidicaldus organivorans, type sp., Acetobacteraceae

D86512, Acidisphaera rubrifaciens, type sp., Acetobacteraceae

AY150047, Roseomonas cervicalis, Acetobacteraceae

AJ488504, Roseomonas ludipueritiae, Acetobacteraceae

FM244739, Roseomonas aestuarii, Acetobacteraceae

AJ786000, Roseomonas lacus, Acetobacteraceae

EF363716, Roseomonas terrae, Acetobacteraceae

EU290160, Roseomonas frigidaquae, Acetobacteraceae

AB369258, Roseomonas stagni, Acetobacteraceae

AM231587, Roseomonas aquatica, Acetobacteraceae

AJ488505, Roseomonas rosea, Acetobacteraceae

EF661571, Roseomonas aerilata, Acetobacteraceae

EF368368, Roseomonas vinacea, Acetobacteraceae

GU168019, Roseomonas pecuniae, Acetobacteraceae

AY220740, Roseomonas gilardii subsp. rosea, Acetobacteraceae

AF538712, Roseomonas mucosa, Acetobacteraceae

AY150045, Roseomonas gilardii subsp. gilardii, type sp., Acetobacteraceae

AJ871428, Belnapia moabensis, type sp., Acetobacteraceae

HQ641379, Belnapia rosea, Acetobacteraceae

D85828, Craurococcus roseus, type sp., Acetobacteraceae

D85827, Paracraurococcus ruber, type sp., Acetobacteraceae

AJ633644, Rhodovarius lipocyclicus, type sp., Acetobacteraceae

EU012448, Roseococcus suduntuyensis, Acetobacteraceae

X72908, Roseococcus thiosulfatophilus, type sp., Acetobacteraceae

AF465832, Rubritepida flocculans, type sp., Acetobacteraceae

EF519867, Elioraea tepidiphila, type sp., Unclassified Rhodospirillales

AF179678, Defluviicoccus vanus, type sp., Rhodospirillaceae

DQ022958, Azospirillum melinis, Rhodospirillaceae

AB185396, Azospirillum oryzae, Rhodospirillaceae

Z29619, Azospirillum lipoferum, type sp., Rhodospirillaceae

DQ682470, Azospirillum zeae, Rhodospirillaceae

AJ238567, Azospirillum doebereinerae, Rhodospirillaceae

EU678791, Azospirillum thiophilum, Rhodospirillaceae

AM922283, Azospirillum picis, Rhodospirillaceae

GU256444, Azospirillum formosense, Rhodospirillaceae

AY324110, Azospirillum brasilense, Rhodospirillaceae

DQ393891, Azospirillum canadense, Rhodospirillaceae

AM419042, Azospirillum rugosum, Rhodospirillaceae

X79731, Azospirillum halopraeferens, Rhodospirillaceae

EU678309, Elstera litoralis, type sp., Rhodospirillaceae

DQ672568, Skermanella aerolata, Rhodospirillaceae

X90760, Skermanella parooensis, type sp., Rhodospirillaceae

HQ315828, Skermanella stibiiresistens, Rhodospirillaceae

EU833987, Desertibacter roseus, type sp., Rhodospirillaceae

EU586202, Skermanella xinjiangensis, Rhodospirillaceae

D12701, Rhodocista centenaria, type sp., Rhodospirillaceae

AF523824, Rhodocista pekingensis, Rhodospirillaceae

Z29583, Azospirillum irakense, Rhodospirillaceae

GU256437, Azospirillum amazonense, Rhodospirillaceae

X71837, Caedibacter caryophilus, Unclassified Thiotrichales

AB510913, Constrictibacter antarcticus, type sp., Rhodospirillaceae

AJ535710, Stella humosa, type sp., Acetobacteraceae

AJ535711, Stella vacuolata, Acetobacteraceae

AB245352, Inquilinus ginsengisoli, Rhodospirillaceae

AY043374, Inquilinus limosus, type sp., Rhodospirillaceae

DQ665838, Nisaea denitrificans, type sp., Rhodospirillaceae

DQ665839, Nisaea nitritireducens, Rhodospirillaceae

EU008565, Thalassobaculum salexigens, Rhodospirillaceae

EF203900, Thalassobaculum litoreum, type sp., Rhodospirillaceae

EU656113, Oceanibaculum indicum, type sp., Rhodospirillaceae

FJ463255, Oceanibaculum pacificum, Rhodospirillaceae

EF394922, Reyranella massiliensis, type sp., Unclassified Rhodospirillales

FJ455532, Dongia mobilis, type sp., Rhodospirillaceae

AM779061, Phaeospirillum chandramohanii, Rhodospirillaceae

AM901294, Phaeospirillum oryzae, Rhodospirillaceae

D14433, Phaeospirillum fulvum, type sp., Rhodospirillaceae

FR733695, Phaeospirillum molischianum, Rhodospirillaceae

FN675262, Phaeospirillum tilakii, Rhodospirillaceae

FJ562215, Aquaspirillum polymorphum, Neisseriaceae

Y10109, Magnetospirillum gryphiswaldense, type sp., Rhodospirillaceae

Y10110, Magnetospirillum magnetotacticum, Rhodospirillaceae

AF524863, Telmatospirillum siberiense, type sp., Rhodospirillaceae

EF493243, Mariprofundus ferrooxydans, type sp., Mariprofundaceae

Spirochaetes (82)

Spirochaetaceae (55)

AF033306, Treponema socranskii subsp. socranskii, Spirochaetaceae

AF033305, Treponema socranskii subsp. buccale, Spirochaetaceae

AF033307, Treponema socranskii subsp. paredis, Spirochaetaceae

Y09959, Treponema amylovorum, Spirochaetaceae

AF302937, Treponema parvum, Spirochaetaceae

AY518274, Treponema porcinum, Spirochaetaceae

M57738, Treponema succinifaciens, Spirochaetaceae

FR749895, Treponema bryantii, Spirochaetaceae

AY230217, Treponema berlinense, Spirochaetaceae

GU562449, Treponema pectinovorum, Spirochaetaceae

M71238, Treponema saccharophilum, Spirochaetaceae

Y16568, Treponema brennaborense, Spirochaetaceae

X87139, Treponema lecithinolyticum, Spirochaetaceae

X87140, Treponema maltophilum, Spirochaetaceae

AF139203, Treponema denticola, Spirochaetaceae

AJ543428, Treponema putidum, Spirochaetaceae

EF061268, Treponema pedis, Spirochaetaceae

D85437, Treponema medium, Spirochaetaceae

FR749929, Spirochaeta zuelzerae, Spirochaetaceae

AF320287, Treponema azotonutricium, Spirochaetaceae

AF093252, Treponema primitia, Spirochaetaceae

AM182455, Treponema isoptericolens, Spirochaetaceae

EU580141, Spirochaeta caldaria, Spirochaetaceae

FR733664, Spirochaeta stenostrepta, Spirochaetaceae

X93926, Spirochaeta asiatica, Spirochaetaceae

AY995150, Spirochaeta dissipatitropha, Spirochaetaceae

X93928, Spirochaeta africana, Spirochaetaceae

X93927, Spirochaeta alkalica, Spirochaetaceae

AF373921, Spirochaeta americana, Spirochaetaceae

M88722, Spirochaeta halophila, Spirochaetaceae

AF357916, Sphaerochaeta globosa, type sp., Spirochaetaceae

AF357917, Sphaerochaeta pleomorpha, Spirochaetaceae

AJ698092, Spirochaeta coccoides, Spirochaetaceae

FR749903, Spirochaeta thermophila, Spirochaetaceae

AJ698859, Spirochaeta bajacaliforniensis, Spirochaetaceae

U80597, Spirochaeta smaragdinae, Spirochaetaceae

M59293, Borrelia burgdorferi, Spirochaetaceae

EU085407, Borrelia carolinensis, Spirochaetaceae

L40597, Borrelia japonica, Spirochaetaceae

AB022101, Borrelia sinica, Spirochaetaceae

D67018, Borrelia garinii, Spirochaetaceae

X98228, Borrelia lusitaniae, Spirochaetaceae

EU081285, Borrelia americana, Spirochaetaceae

D67022, Borrelia turdi, Spirochaetaceae

X98232, Borrelia valaisiana, Spirochaetaceae

FR733687, Borrelia afzelii, Spirochaetaceae

D67023, Borrelia tanukii, Spirochaetaceae

U42286, Borrelia coriaceae, Spirochaetaceae

D45192, Borrelia miyamotoi, Spirochaetaceae

AB111849, Borrelia turcica, Spirochaetaceae

FR749896, Spirochaeta aurantia subsp. aurantia, Spirochaetaceae

FR749931, Spirochaeta isovalerica, Spirochaetaceae

AY337318, Spirochaeta perfilievii, Spirochaetaceae

FR733665, Spirochaeta litoralis, Spirochaetaceae

EU448140, Spirochaeta cellobiosiphila, Spirochaetaceae

AB364473, Exilispira thermophila, type sp., Unclassified Spirochaetales

Brachyspiraceae (7)

EF455559, Brachyspira alvinipulli, Brachyspiraceae

AY155458, Brachyspira pilosicoli, Brachyspiraceae

U23033, Brachyspira intermedia, Brachyspiraceae

U14930, Brachyspira hyodysenteriae, Brachyspiraceae

U14920, Brachyspira innocens, Brachyspiraceae

AY312492, Brachyspira murdochii, Brachyspiraceae

Z22781, Brachyspira aalborgi, type sp., Brachyspiraceae

GU993264, Brevinema andersonii, type sp., Brevinemataceae

Leptospiraceae (18)

AY887899, Leptospira borgpetersenii , Leptospiraceae

AY631883, Leptospira santarosai, Leptospiraceae

AY631877, Leptospira weilii , Leptospiraceae

AY631880, Leptospira alexanderi, Leptospiraceae

Z12817, Leptospira interrogans, type sp., Leptospiraceae

AY631895, Leptospira kirschneri , Leptospiraceae

AY631886, Leptospira noguchii , Leptospiraceae

AB279549, Leptospira kmetyi, Leptospiraceae

AY796065, Leptospira broomii, Leptospiraceae

AY631885, Leptospira fainei, Leptospiraceae

EF612284, Leptospira licerasiae, Leptospiraceae

EF025496, Leptospira wolffii, Leptospiraceae

Z21634, Leptospira inadai, Leptospiraceae

AY631876, Leptospira biflexa , Leptospiraceae

AY631878, Leptospira meyeri , Leptospiraceae

AY631879, Leptospira wolbachii , Leptospiraceae

AY714984, Leptonema illini, type sp., Leptospiraceae

AY293856, Turneriella parva, type sp., Leptospiraceae

Fusobacteria (38)

Fusobacteriaceae (28)

X55406, Filifactor alocis, Peptostreptococcaceae

X55404, Fusobacterium nucleatum subsp. animalis, Fusobacteriaceae

M58685, Fusobacterium simiae, Fusobacteriaceae

AE009951, Fusobacterium nucleatum subsp. nucleatum, type sp., Fusobacteriaceae

X55403, Fusobacterium nucleatum subsp. fusiforme, Fusobacteriaceae

AABF01000111, Fusobacterium nucleatum subsp. vincentii , Fusobacteriaceae

AY162221, Fusobacterium canifelinum, Fusobacteriaceae

X55405, Fusobacterium periodonticum, Fusobacteriaceae

AF287812, Fusobacterium nucleatum subsp. polymorphum, Fusobacteriaceae

M58681, Fusobacterium russii, Fusobacteriaceae

AJ867039, Fusobacterium necrophorum subsp. necrophorum, Fusobacteriaceae

AB525413, Fusobacterium necrophorum subsp. funduliforme, Fusobacteriaceae

AJ295750, Fusobacterium equinum, Fusobacteriaceae

X55410, Fusobacterium gonidiaformans, Fusobacteriaceae

X55412, Fusobacterium ulcerans, Fusobacteriaceae

AJ867036, Fusobacterium varium, Fusobacteriaceae

X77850, Clostridium rectum, Clostridiaceae

AJ867032, Fusobacterium mortiferum, Fusobacteriaceae

AJ867034, Fusobacterium necrogenes, Fusobacteriaceae

M58684, Fusobacterium perfoetens, Fusobacteriaceae

AJ438155, Cetobacterium somerae, Fusobacteriaceae

X78419, Cetobacterium ceti, type sp., Fusobacteriaceae

AJ307980, Ilyobacter insuetus, Fusobacteriaceae

X54275, Propionigenium modestum, type sp., Fusobacteriaceae

CP002281, Ilyobacter polytropus, type sp., Fusobacteriaceae

X84049, Propionigenium maris, Fusobacteriaceae

AJ307982, Ilyobacter tartaricus, Fusobacteriaceae

AY579753, Psychrilyobacter atlanticus, type sp., Fusobacteriaceae

Leptotrichiaceae (10)

EU919515, Leptotrichia hongkongensis, Leptotrichiaceae

AF206305, Leptotrichia trevisanii, Leptotrichiaceae

AY029806, Leptotrichia shahii, Leptotrichiaceae

AY029802, Leptotrichia wadei, Leptotrichiaceae

CP001685, Leptotrichia buccalis, type sp., Leptotrichiaceae

AY029803, Leptotrichia hofstadii, Leptotrichiaceae

AY029807, Leptotrichia goodfellowii, Leptotrichiaceae

CP001739, Sebaldella termitidis, type sp., Leptotrichiaceae

CP001779, Streptobacillus moniliformis, type sp., Leptotrichiaceae

AJ344093, Sneathia sanguinegens, type sp., Leptotrichiaceae

AB529679, Armatimonas rosea, type sp., Armatimonadaceae

AM749780, Chthonomonas calidirosea, type.sp, Chthonomonadaceae

AM490846, Elusimicrobium minutum, type sp., Elusimicrobiaceae

Deferribacteres (10)

X95744, Geovibrio ferrireducens, type sp., Deferribacteraceae

AJ299402, Geovibrio thiophilus, Deferribacteraceae

AF146526, Denitrovibrio acetiphilus, type sp., Deferribacteraceae

AY387670, Mucispirillum schaedleri, type sp., Deferribacteraceae

AB364234, Calditerrivibrio nitroreducens, type sp., Deferribacteraceae

AJ515882, Deferribacter abyssi, Deferribacteraceae

EU407777, Deferribacter autotrophicus, Deferribacteraceae

AB086060, Deferribacter desulfuricans, Deferribacteraceae

U75602, Deferribacter thermophilus, type sp., Deferribacteraceae

M59231, Flexistipes sinusarabici, type sp., Deferribacteraceae

Chrysiogenetes (4)

Chrysiogenetes (4)

DQ991965, Desulfurispirillum indicum, Chrysiogenaceae

DQ666683, Desulfurispirillum alkaliphilum, type sp., Chrysiogenaceae

GQ922842, Desulfurispira natronophila, type sp., Chrysiogenaceae

X81319, Chrysiogenes arsenatis, type sp., Chrysiogenaceae

Acidobacteria (17)

AM887756, Granulicella aggregans, Acidobacteriaceae

AM887759, Granulicella rosea, Acidobacteriaceae

AM887757, Granulicella pectinivorans, Acidobacteriaceae

AM887758, Granulicella paludicola, type sp., Acidobacteriaceae

DQ660892, Terriglobus roseus, type sp., Acidobacteriaceae

HM214537, Terriglobus saanensis, Acidobacteriaceae

DQ528761, Edaphobacter aggregans, Acidobacteriaceae

DQ528760, Edaphobacter modestus, type sp., Acidobacteriaceae

FR666706, Bryocella elongata, type sp., Acidobacteriaceae

FR774763, Acidicapsa borealis, type sp., Acidobacteriaceae

EU780204, Acidicapsa ligni, Acidobacteriaceae

AM887760, Telmatobacter bradus, type sp., Acidobacteriaceae

CP001472, Acidobacterium capsulatum, type sp., Acidobacteriaceae

AM162405, Bryobacter aggregatus, type sp., Unclassified Acidobacteria

U41563, Geothrix fermentans, type sp., Holophagaceae

X77215, Holophaga foetida, type sp., Holophagaceae

AB303221, Acanthopleuribacter pedis, type sp., Acanthopleuribacteraceae

Epsilonproteobacteria (97)

Campylobacterales (87)

Campylobacteraceae (48)

U03022, Campylobacter helveticus, Campylobacteraceae

DQ174157, Campylobacter upsaliensis, Campylobacteraceae

EU623473, Campylobacter avium, Campylobacteraceae

DQ400345, Campylobacter cuniculorum, Campylobacteraceae

EF621894, Campylobacter canadensis, Campylobacteraceae

AM922331, Campylobacter peloridis, Campylobacteraceae

AY621114, Campylobacter lari subsp. lari, Campylobacteraceae

FM883694, Campylobacter volucris, Campylobacteraceae

AM933371, Campylobacter subantarcticus, Campylobacteraceae

AM922330, Campylobacter lari subsp. concheus, Campylobacteraceae

DQ174183, Campylobacter insulaenigrae, Campylobacteraceae

DQ174144, Campylobacter jejuni subsp. doylei, Campylobacteraceae

AF372091, Campylobacter jejuni subsp. jejuni, Campylobacteraceae

AF372092, Campylobacter coli, Campylobacteraceae

AF097685, Campylobacter hyointestinalis subsp. lawsonii, Campylobacteraceae

AF043425, Campylobacter lanienae, Campylobacteraceae

AF097689, Campylobacter hyointestinalis subsp. hyointestinalis, Campylobacteraceae

DQ174131, Campylobacter fetus subsp. venerealis, Campylobacteraceae

DQ174127, Campylobacter fetus subsp. fetus, type sp., Campylobacteraceae

DQ174173, Campylobacter mucosalis, Campylobacteraceae

L04321, Campylobacter ureolyticus, Campylobacteraceae

AJ251584, Campylobacter hominis, Campylobacteraceae

DQ174168, Campylobacter gracilis, Campylobacteraceae

X67775, Campylobacter sputorum subsp. sputorum, Campylobacteraceae

DQ174151, Campylobacter sputorum subsp. bubulus, Campylobacteraceae

DQ174169, Campylobacter rectus, Campylobacteraceae

DQ174155, Campylobacter showae, Campylobacteraceae

DQ174165, Campylobacter curvus, Campylobacteraceae

DQ174166, Campylobacter concisus, Campylobacteraceae

U85964, Sulfurospirillum arsenophilum, Campylobacteraceae

AF218076, Sulfurospirillum halorespirans, Campylobacteraceae

X82931, Sulfurospirillum multivorans, Campylobacteraceae

AF038843, Sulfurospirillum barnesii, Campylobacteraceae

Y13671, Sulfurospirillum deleyianum, type sp., Campylobacteraceae

AB246781, Sulfurospirillum cavolei, Campylobacteraceae

Y11561, Sulfurospirillum arcachonense, Campylobacteraceae

AY314753, Arcobacter thereius, Campylobacteraceae

FN650333, Arcobacter trophiarum, Campylobacteraceae

L14625, Arcobacter skirrowii, Campylobacteraceae

L14624, Arcobacter cryaerophilus, Campylobacteraceae

AJ607391, Arcobacter cibarius, Campylobacteraceae

AY621116, Arcobacter butzleri, Campylobacteraceae

HQ115595, Arcobacter defluvii, Campylobacteraceae

L14627, Arcobacter nitrofigilis, type sp., Campylobacteraceae

EU512920, Arcobacter marinus , Campylobacteraceae

FR675874, Arcobacter molluscorum, Campylobacteraceae

AF513455, Arcobacter halophilus, Campylobacteraceae

EU669904, Arcobacter mytili, Campylobacteraceae

Helicobacteraceae (33)

Y09404, Helicobacter bizzozeronii, Helicobacteraceae

DQ004689, Helicobacter cynogastricus, Helicobacteraceae

U89351, Helicobacter salomonis, Helicobacteraceae

M57398, Helicobacter felis, Helicobacteraceae

EF070342, Helicobacter baculiformis, Helicobacteraceae

HM625820, Helicobacter heilmannii, Helicobacteraceae

EF204589, Helicobacter suis, Helicobacteraceae

M88148, Helicobacter acinonychis, Helicobacteraceae

U01330, Helicobacter pylori, type sp., Helicobacteraceae

AF292378, Helicobacter cetorum, Helicobacteraceae

DQ415545, Helicobacter anseris, Helicobacteraceae

M35048, Helicobacter mustelae, Helicobacteraceae

DQ415546, Helicobacter brantae, Helicobacteraceae

AY686606, Helicobacter cholecystus, Helicobacteraceae

M88147, Helicobacter pametensis, Helicobacteraceae

M88154, Helicobacter fennelliae, Helicobacteraceae

U65103, Helicobacter trogontum, Helicobacteraceae

AF333341, Helicobacter marmotae, Helicobacteraceae

AY742307, Helicobacter mastomyrinus, Helicobacteraceae

AF297868, Helicobacter aurati, Helicobacteraceae

M80205, Helicobacter muridarum, Helicobacteraceae

AF127912, Helicobacter typhlonius, Helicobacteraceae

U07574, Helicobacter hepaticus, Helicobacteraceae

DQ307735, Helicobacter equorum, Helicobacteraceae

AY631956, Helicobacter pullorum, Helicobacteraceae

AF262037, Helicobacter canadensis, Helicobacteraceae

U18766, Helicobacter bilis, Helicobacteraceae

M88150, Helicobacter cinaedi, Helicobacteraceae

AY631945, Helicobacter canis, Helicobacteraceae

AF000221, Helicobacter ganmani, Helicobacteraceae

AF072471, Helicobacter mesocricetorum, Helicobacteraceae

U96296, Helicobacter rodentium, Helicobacteraceae

M88159, Wolinella succinogenes, type sp., Helicobacteraceae

AB088431, Sulfurimonas autotrophica, type sp., Helicobacteraceae

AB088431, Sulfurimonas autotrophica, type sp., Helicobacteraceae

CP000153, Sulfurimonas denitrificans, Helicobacteraceae

AB252048, Sulfurimonas paralvinellae, Helicobacteraceae

AB175500, Nitratifractor salsuginis, type sp., Nautiliaceae

AB091292, Sulfurovum lithotrophicum, type sp., Helicobacteraceae

AB105048, Hydrogenimonas thermophila, type sp., Hydrogenimonaceae

AB175499, Nitratiruptor tergarcus, type sp., Nautiliaceae

Nautiliaceae (9)

AM937002, Nautilia abyssi, Nautiliaceae

AF357197, Nautilia profundicola, Nautiliaceae

AJ404370, Nautilia lithotrophica, type sp., Nautiliaceae

FJ532475, Nautilia nitratireducens, Nautiliaceae

AB167820, Lebetimonas acidiphila, type sp., Nautiliaceae

AJ309655, Caminibacter hydrogeniphilus, type sp., Nautiliaceae

AY691430, Caminibacter mediatlanticus, Nautiliaceae

AJ535664, Caminibacter profundus, Nautiliaceae

AB175498, Thioreductor micantisoli, type sp., Nautiliaceae

Desulfurellaceae (7)

Y16943, Desulfurella multipotens, Desulfurellaceae

Y16942, Desulfurella propionica, Desulfurellaceae

X72768, Desulfurella acetivorans, type sp., Desulfurellaceae

Y16941, Desulfurella kamchatkensis, Desulfurellaceae

Y18292, Hippea maritima, type sp., Desulfurellaceae

FR754498, Hippea jasoniae, Desulfurellaceae

FR754500, Hippea alviniae, Desulfurellaceae

Desulfovibrionales (88)

Desulfovibrionaceae (63)

Y12254, Desulfovibrio intestinalis, Desulfovibrionaceae

FR733678, Desulfovibrio simplex, Desulfovibrionaceae

AF192153, Desulfovibrio desulfuricans subsp. desulfuricans, Desulfovibrionaceae

AF192152, Desulfovibrio piger, Desulfovibrionaceae

AJ867049, Bilophila wadsworthia, type sp., Desulfovibrionaceae

L15739, Lawsonia intracellularis, type sp., Desulfovibrionaceae

DQ122124, Desulfovibrio oxamicus, Desulfovibrionaceae

X87409, Desulfovibrio termitidis, Desulfovibrionaceae

Z24450, Desulfovibrio longreachensis, Desulfovibrionaceae

AF418179, Desulfovibrio vulgaris, Desulfovibrionaceae

X99501, Desulfovibrio cuneatus, Desulfovibrionaceae

X99504, Desulfovibrio litoralis, Desulfovibrionaceae

U32578, Desulfovibrio acrylicus, Desulfovibrionaceae

FJ655909, Desulfovibrio desulfuricans subsp. aestuarii, Desulfovibrionaceae

AB353727, Desulfovibrio marinisediminis, Desulfovibrionaceae

AM418397, Desulfovibrio psychrotolerans, Desulfovibrionaceae

Y11984, Desulfovibrio alaskensis, Desulfovibrionaceae

X93994, Desulfovibrio vietnamensis, Desulfovibrionaceae

Y09504, Desulfovibrio indonesiensis, Desulfovibrionaceae

DQ365924, Desulfovibrio marinus, Desulfovibrionaceae

U31080, Desulfovibrio gabonensis, Desulfovibrionaceae

FR749898, Desulfovibrio giganteus, Desulfovibrionaceae

DQ447183, Desulfovibrio gigas, Desulfovibrionaceae

AY726757, Desulfovibrio paquesii, Desulfovibrionaceae

AF230530, Desulfovibrio dechloracetivorans, Desulfovibrionaceae

AB110541, Desulfovibrio portus, Desulfovibrionaceae

FR733706, Desulfovibrio profundus, Desulfovibrionaceae

HM852532, Desulfovibrio piezophilus, Desulfovibrionaceae

X95230, Desulfovibrio aespoeensis, Desulfovibrionaceae

EF577029, Desulfovibrio tunisiensis, Desulfovibrionaceae

U48243, Desulfovibrio halophilus, Desulfovibrionaceae

U33316, Desulfovibrio oxyclinae, Desulfovibrionaceae

U53464, Desulfovibrio gracilis, Desulfovibrionaceae

AY359867, Desulfovibrio longus, Desulfovibrionaceae

DQ148944, Desulfovibrio ferrireducens, Desulfovibrionaceae

DQ148943, Desulfovibrio frigidus, Desulfovibrionaceae

AF458778, Desulfovibrio hydrothermalis, Desulfovibrionaceae

CP001649, Desulfovibrio salexigens, Desulfovibrionaceae

Y18049, Desulfovibrio zosterae, Desulfovibrionaceae

AY359868, Desulfovibrio bastinii, Desulfovibrionaceae

DQ296030, Desulfovibrio arcticus, Desulfovibrionaceae

AJ582755, Desulfovibrio idahonensis, Desulfovibrionaceae

AF227984, Desulfovibrio mexicanus, Desulfovibrionaceae

AF067964, Desulfovibrio aminophilus, Desulfovibrionaceae

DQ422859, Desulfovibrio bizertensis, Desulfovibrionaceae

HQ697913, Desulfobaculum xiamenensis, type sp., Desulfovibrionaceae

AF050100, Desulfovibrio senezii, Desulfovibrionaceae

DQ841177, Desulfocurvus vexinensis, type sp., Desulfovibrionaceae

AY649785, Desulfovibrio alkalitolerans, Desulfovibrionaceae

AY626035, Desulfovibrio carbinolicus, Desulfovibrionaceae

D43944, Desulfovibrio magneticus, Desulfovibrionaceae

AF053752, Desulfovibrio burkinensis, Desulfovibrionaceae

AY746987, Desulfovibrio aerotolerans, Desulfovibrionaceae

DQ186200, Desulfovibrio carbinoliphilus, Desulfovibrionaceae

AF050101, Desulfovibrio fructosivorans, Desulfovibrionaceae

AM947130, Desulfovibrio marrakechensis, Desulfovibrionaceae

AF053751, Desulfovibrio alcoholivorans, Desulfovibrionaceae

Y17764, Desulfovibrio sulfodismutans, Desulfovibrionaceae

AF177276, Desulfovibrio inopinatus, Desulfovibrionaceae

AB303305, Desulfovibrio butyratiphilus , Desulfovibrionaceae

AY574979, Desulfovibrio putealis, Desulfovibrionaceae

EU659693, Desulfovibrio africanus subsp. uniflagellum, Desulfovibrionaceae

X99236, Desulfovibrio africanus, Desulfovibrionaceae

Desulfonatronaceae (5)

AF418171, Desulfonatronum lacustre, type sp., Desulfonatronaceae

AF373920, Desulfonatronum thiodismutans, Desulfonatronaceae

FJ469577, Desulfonatronum thioautotrophicum, Desulfonatronaceae

FJ469578, Desulfonatronum thiosulfatophilum, Desulfonatronaceae

AY725424, Desulfonatronum cooperativum, Desulfonatronaceae

Desulfomicrobiaceae (7)

U64865, Desulfomicrobium apsheronum, Desulfomicrobiaceae

AJ277886, Desulfomicrobium escambiense, Desulfomicrobiaceae

AJ277897, Desulfomicrobium norvegicum, Desulfomicrobiaceae

AJ237604, Desulfomicrobium macestii, Desulfomicrobiaceae

AJ277894, Desulfomicrobium baculatum, type sp., Desulfomicrobiaceae

AJ251623, Desulfomicrobium orale, Desulfomicrobiaceae

AY464939, Desulfomicrobium thermophilum, Desulfomicrobiaceae

Desulfohalobiaceae (13)

FJ194951, Desulfonauticus autotrophicus, Desulfohalobiaceae

FJ194951, Desulfonauticus autotrophicus, Desulfohalobiaceae

AF524933, Desulfonauticus submarinus, type sp., Desulfohalobiaceae

X80922, Desulfothermus naphthae, type sp., Desulfohalobiaceae

AB264617, Desulfothermus okinawensis, Desulfohalobiaceae

DQ139408, Desulfovermiculus halophilus, type sp., Desulfohalobiaceae

DQ067421, Desulfohalobium utahense, Desulfohalobiaceae

X99235, Desulfohalobium retbaense, type sp., Desulfohalobiaceae

GU196831, Desulfonatronovibrio magnus, Desulfohalobiaceae

FJ469579, Desulfonatronovibrio thiodismutans, Desulfohalobiaceae

X99234, Desulfonatronovibrio hydrogenovorans, type sp., Desulfohalobiaceae

GQ922847, Desulfonatronovibrio halophilus, Desulfohalobiaceae

EU296539, Desulfonatronospira delicata, Desulfohalobiaceae

EU296537, Desulfonatronospira thiodismutans, type sp., Desulfohalobiaceae

Deltaproteobacteria (152)

Desulfobacteraceae (41)

AJ277887, Desulfococcus biacutus, Desulfobacteraceae

AF418173, Desulfococcus multivorans, type sp., Desulfobacteraceae

U45989, Desulfonema magnum, Desulfobacteraceae

U45990, Desulfonema limicola, type sp., Desulfobacteraceae

DQ067422, Desulfosalsimonas propionicica, type sp., Desulfobacteraceae

U45992, Desulfonema ishimotonii, Desulfobacteraceae

Y17286, Desulfosarcina ovata, Desulfobacteraceae

M34407, Desulfosarcina variabilis, type sp., Desulfobacteraceae

AJ237603, Desulfosarcina cetonica, Desulfobacteraceae

AY184360, Desulfatibacillum aliphaticivorans, type sp., Desulfobacteraceae

AY493562, Desulfatibacillum alkenivorans, Desulfobacteraceae

AJ237607, Desulfobacterium indolicum, type sp., Desulfobacteraceae

DQ146482, Desulfatirhabdium butyrativorans, type sp., Desulfobacteraceae

FR733666, Desulfobotulus sapovorans, type sp., Desulfobacteraceae

FJ789839, Desulfobotulus sapovorans, type sp., Desulfobacteraceae

FJ788523, Desulfobotulus alkaliphilus, Desulfobacteraceae

AF022936, Desulfocella halophila, type sp., Desulfobacteraceae

AF243334, Desulforegula conservatrix, type sp., Desulfobacteraceae

DQ826724, Desulfatiferula olefinivorans, type sp., Desulfobacteraceae

EF187256, Desulfoluna spongiiphila, Desulfobacteraceae

AB110540, Desulfoluna butyratoxydans, type sp., Desulfobacteraceae

AF099065, Desulfofrigus fragile, Desulfobacteraceae

AF099064, Desulfofrigus oceanense, type sp., Desulfobacteraceae

AF099063, Desulfofaba gelida, type sp., Desulfobacteraceae

AF321820, Desulfofaba hansenii, Desulfobacteraceae

AY268891, Desulfofaba fastidiosa, Desulfobacteraceae

AF418175, Desulfobacter curvatus, Desulfobacteraceae

AF418180, Desulfobacter postgatei, type sp., Desulfobacteraceae

Y14745, Desulfobacter halotolerans, Desulfobacteraceae

AJ441315, Desulfobacter latus, Desulfobacteraceae

FR733673, Desulfobacter hydrogenophilus, Desulfobacteraceae

U12254, Desulfobacter vibrioformis, Desulfobacteraceae

X99637, Desulfospira joergensenii, type sp., Desulfobacteraceae

AF418176, Desulfotignum balticum, type sp., Desulfobacteraceae

EF207157, Desulfotignum toluenicum, Desulfobacteraceae

AF420288, Desulfotignum phosphitoxidans, Desulfobacteraceae

AJ237606, Desulfobacula phenolica, Desulfobacteraceae

AJ441316, Desulfobacula toluolica, type sp., Desulfobacteraceae

FR733668, Desulfobacterium niacini, Desulfobacteraceae

AF418178, Desulfobacterium vacuolatum, Desulfobacteraceae

AF418177, Desulfobacterium autotrophicum, Desulfobacteraceae

Syntrophaceae (4)

X85131, Syntrophus buswellii, type sp., Syntrophaceae

X85132, Syntrophus gentianae, Syntrophaceae

CP000252, Syntrophus aciditrophicus, Syntrophaceae

AF126282, Smithella propionica, type sp., Syntrophaceae

AJ292759, Bdellovibrio bacteriovorus, type sp., Bdellovibrionaceae

Syntrophobacteraceae (11)

X82874, Syntrophobacter fumaroxidans, Syntrophobacteraceae

X82875, Syntrophobacter pfennigii, Syntrophobacteraceae

X83274, Desulforhabdus amnigena, type sp., Syntrophobacteraceae

AJ237605, Desulfovirga adipica, type sp., Syntrophobacteraceae

X70905, Syntrophobacter wolinii, type sp., Syntrophobacteraceae

AY651787, Syntrophobacter sulfatireducens, Syntrophobacteraceae

FJ491989, Desulfosoma caldarium, type sp., Syntrophobacteraceae

U25627, Thermodesulforhabdus norvegica, type sp., Syntrophobacteraceae

L27426, Desulfacinum infernum, type sp., Syntrophobacteraceae

AF170417, Desulfacinum hydrothermale, Syntrophobacteraceae

DQ303457, Desulfoglaeba alkanexedens, type sp., Syntrophobacteraceae

AF002671, Desulfobacca acetoxidans, type sp., Syntrophaceae

AJ237601, Desulfobacterium anilini, Desulfobacteraceae

AF418174, Desulfarculus baarsii, type sp., Desulfarculaceae

AF230531, Desulfomonile limimaris, Syntrophaceae

AM086646, Desulfomonile tiedjei, type sp., Syntrophaceae

Desulfobulbaceae (16)

Y13672, Desulfocapsa sulfexigens, Desulfobulbaceae

X95181, Desulfocapsa thiozymogenes, type sp., Desulfobulbaceae

AM774321, Desulfopila inferna, Desulfobulbaceae

AB110542, Desulfopila aestuarii, type sp., Desulfobulbaceae

AF118453, Desulforhopalus singaporensis, Desulfobulbaceae

X99707, Desulfofustis glycolicus, type sp., Desulfobulbaceae

L42613, Desulforhopalus vacuolatus, type sp., Desulfobulbaceae

AJ237602, Desulfobacterium catecholicum, Desulfobacteraceae

AF099061, Desulfotalea arctica, Desulfobulbaceae

AF099062, Desulfotalea psychrophila, type sp., Desulfobulbaceae

X95180, Desulfobulbus elongatus, Desulfobulbaceae

AY548789, Desulfobulbus propionicus, type sp., Desulfobulbaceae

U12253, Desulfobulbus rhabdoformis, Desulfobulbaceae

AB110549, Desulfobulbus japonicus, Desulfobulbaceae

AF354663, Desulfobulbus mediterraneus, Desulfobulbaceae

EF422413, Desulfurivibrio alkaliphilus, type sp., Desulfobulbaceae

Bacteriovoracaceae (4)

AF084859, Bacteriovorax litoralis, Bacteriovoracaceae

AF084854, Bacteriovorax marinus, Bacteriovoracaceae

AJ288899, Bacteriovorax stolpii, type sp., Bacteriovoracaceae

AF084852, Peredibacter starrii, type sp., Bacteriovoracaceae

Desulfuromonadales (37)

Desulfuromonadaceae (22)

X79412, Desulfuromusa bakii, Desulfuromonadaceae

X79414, Desulfuromusa kysingii, type sp., Desulfuromonadaceae

X79414, Desulfuromusa kysingii, type sp., Desulfuromonadaceae

X79415, Desulfuromusa succinoxidans, Desulfuromonadaceae

AY835392, Desulfuromusa ferrireducens, Desulfuromonadaceae

AY187303, Geopsychrobacter electrodiphilus, type sp., Geobacteraceae

Y17712, Malonomonas rubra, type sp., Desulfuromonadaceae

DQ991964, Pelobacter seleniigenes, Desulfuromonadaceae

X77216, Pelobacter acidigallici, type sp., Desulfuromonadaceae

FR749901, Pelobacter massiliensis, Desulfuromonadaceae

AY155599, Geothermobacter ehrlichii, type sp., Geobacteraceae

DQ309326, Geoalkalibacter ferrihydriticus, type sp., Geobacteraceae

EU182247, Geoalkalibacter subterraneus, Geobacteraceae

U28172, Desulfuromonas palmitatis, Desulfuromonadaceae

U23140, Desulfuromonas acetexigens, Desulfuromonadaceae

U49748, Desulfuromonas chloroethenica, Desulfuromonadaceae

AF357915, Desulfuromonas michiganensis, Desulfuromonadaceae

X70955, Pelobacter acetylenicus, Desulfuromonadaceae

U41562, Pelobacter venetianus, Desulfuromonadaceae

CP000142, Pelobacter carbinolicus , Desulfuromonadaceae

AAEW02000008, Desulfuromonas acetoxidans, type sp., Desulfuromonadaceae

AY835388, Desulfuromonas svalbardensis, Desulfuromonadaceae

Y11560, Desulfuromonas thiophila, Desulfuromonadaceae

Geobacteraceae (15)

AY187307, Geobacter bemidjiensis, Geobacteraceae

U96917, Geobacter bremensis, Geobacteraceae

EF527427, Geobacter uraniireducens, Geobacteraceae

EU660516, Geobacter daltonii , Geobacteraceae

U41561, Geobacter chapellei, Geobacteraceae

CP000482, Pelobacter propionicus , Desulfuromonadaceae

AY653549, Geobacter psychrophilus, Geobacteraceae

AF223382, Geobacter thiogenes, Geobacteraceae

U96918, Geobacter pelophilus, Geobacteraceae

DQ145534, Geobacter argillaceus, Geobacteraceae

U28173, Geobacter hydrogenophilus, Geobacteraceae

L07834, Geobacter metallireducens, type sp., Geobacteraceae

AF335183, Geobacter grbiciae, Geobacteraceae

U13928, Geobacter sulfurreducens, Geobacteraceae

DQ145535, Geobacter pickeringii, Geobacteraceae

Myxococcales (33)

Cystobacteraceae and Myxococcaceae (20)

Myxococcaceae (8)

DQ768119, Myxococcus virescens, Myxococcaceae

DQ768116, Myxococcus xanthus, Myxococcaceae

AJ811623, Corallococcus macrosporus, Myxococcaceae

DQ768117, Myxococcus fulvus, type sp., Myxococcaceae

DQ768123, Pyxidicoccus fallax, type sp., Myxococcaceae

AJ811588, Corallococcus coralloides, type sp., Myxococcaceae

DQ768126, Melittangium lichenicola, Cystobacteraceae

AJ811598, Corallococcus exiguus, Myxococcaceae

DQ768108, Cystobacter badius, Cystobacteraceae

DQ768109, Cystobacter fuscus, type sp., Cystobacteraceae

DQ768115, Cystobacter velatus, Cystobacteraceae

DQ768107, Cystobacter armeniaca, Cystobacteraceae

DQ768111, Cystobacter miniatus, Cystobacteraceae

DQ768106, Archangium gephyra, type sp., Cystobacteraceae

DQ768114, Cystobacter violaceus, Cystobacteraceae

DQ768124, Hyalangium minutum, type sp., Cystobacteraceae

DQ768127, Stigmatella aurantiaca, type sp., Cystobacteraceae

AJ970180, Stigmatella erecta, Cystobacteraceae

DQ768129, Stigmatella hybrida, Cystobacteraceae

AF382396, Anaeromyxobacter dehalogenans, type sp., Cystobacteraceae

Nannocystaceae (4)

AB097590, Enhygromyxa salina, type sp., Nannocystaceae

AB083432, Plesiocystis pacifica, type sp., Nannocystaceae

AB084253, Nannocystis exedens, type sp., Nannocystaceae

FR749907, Nannocystis pusilla, Nannocystaceae

Haliangiaceae (2)

AB016470, Haliangium ochraceum, type sp., Haliangiaceae

AB062751, Haliangium tepidum, Haliangiaceae

AJ233944, Kofleria flava, type sp., Kofleriaceae

AJ833647, Byssovorax cruenta, type sp., Polyangiaceae

EU545827, Phaselicystis flava, type sp., Phaselicystidaceae

EU240497, Sorangium cellulosum, type sp., Polyangiaceae

AJ233942, Chondromyces robustus, Polyangiaceae

GU207876, Jahnella thaxteri, Polyangiaceae

HQ540311, Sandaracinus amylolyticus, type sp., Sandaracinaceae

AB212873, Syntrophorhabdus aromaticivorans, type sp., Syntrophorhabdaceae

Bacteroidetes (835)

Flavobacteriaceae (391)

EU221275, Tamlana agarivorans, Flavobacteriaceae

AM286230, Tamlana crocina, type sp., Flavobacteriaceae

HQ336487, Postechiella marina, type sp., Flavobacteriaceae

DQ361033, Flaviramulus basaltis, type sp., Flavobacteriaceae

EF217419, Hyunsoonleella jejuensis, type sp., Flavobacteriaceae

EU443204, Jejuia pallidilutea, type sp., Flavobacteriaceae

HM475133, Snuella lapsa, type.sp, Flavobacteriaceae

EF108219, Gaetbulibacter marinus, Flavobacteriaceae

AY682382, Yeosuana aromativorans, type sp., Flavobacteriaceae

AJ628046, Mariniflexile fucanivorans, Flavobacteriaceae

DQ312294, Mariniflexile gromovii, type sp., Flavobacteriaceae

HQ144198, Mariniflexile aquimaris, Flavobacteriaceae

GU552681, Gaetbulibacter aestuarii, Flavobacteriaceae

AY883937, Gaetbulibacter saemankumensis, type sp., Flavobacteriaceae

AM491809, Algibacter mikhailovii, Flavobacteriaceae

HM475134, Pontirhabdus pectinivorans, type.sp, Flavobacteriaceae

AY187689, Algibacter lectus, type sp., Flavobacteriaceae

DQ167238, Lacinutrix algicola, Flavobacteriaceae

DQ167239, Lacinutrix mariniflava, Flavobacteriaceae

AY694001, Lacinutrix copepodicola, type sp., Flavobacteriaceae

FJ886713, Olleya aquimaris, Flavobacteriaceae

AB265181, Mesoflavibacter zeaxanthinifaciens, type sp., Flavobacteriaceae

HM475138, Flavivirga amylovorans, Flavobacteriaceae

HM475139, Flavivirga jejuensis, type sp., Flavobacteriaceae

DQ001321, Psychroserpens mesophilus, Flavobacteriaceae

U62913, Psychroserpens burtonensis, type sp., Flavobacteriaceae

EU021217, Bizionia argentinensis, Flavobacteriaceae

EU021217, Bizionia argentinensis, Flavobacteriaceae

AY694002, Bizionia myxarmorum, Flavobacteriaceae

AY694003, Bizionia algoritergicola, Flavobacteriaceae

AY693998, Subsaximicrobium saxinquilinus, Flavobacteriaceae

AY693997, Subsaximicrobium wynnwilliamsii, type sp., Flavobacteriaceae

FJ716799, Bizionia echini, Flavobacteriaceae

AY694004, Bizionia gelidisalsuginis, Flavobacteriaceae

AY694005, Bizionia saleffrena, Flavobacteriaceae

AY651070, Bizionia paragorgiae, type sp., Flavobacteriaceae

AY187688, Formosa agariphila, Flavobacteriaceae

AY228461, Formosa algae, type sp., Flavobacteriaceae

FJ348469, Formosa spongicola, Flavobacteriaceae

HQ257254, Corallibacter vietnamensis, type sp., Flavobacteriaceae

FJ360684, Meridianimaribacter flavus, type sp., Flavobacteriaceae

U64013, Winogradskyella rapida, Flavobacteriaceae

AB438962, Winogradskyella arenosi, Flavobacteriaceae

GQ181061, Winogradskyella pacifica, Flavobacteriaceae

AY521223, Winogradskyella thalassocola, type sp., Flavobacteriaceae

AY521224, Winogradskyella epiphytica, Flavobacteriaceae

AY521225, Winogradskyella eximia, Flavobacteriaceae

FJ919968, Winogradskyella lutea, Flavobacteriaceae

EU727254, Winogradskyella echinorum, Flavobacteriaceae

HQ456127, Winogradskyella ulvae, Flavobacteriaceae

AY848823, Winogradskyella poriferorum, Flavobacteriaceae

HM368527, Winogradskyella aquimaris, Flavobacteriaceae

FJ595484, Winogradskyella exilis, Flavobacteriaceae

U62914, Gelidibacter algens, type sp., Flavobacteriaceae

AF001369, Gelidibacter gilvus, Flavobacteriaceae

AJ344133, Gelidibacter mesophilus, Flavobacteriaceae

AY694009, Gelidibacter salicanalis, Flavobacteriaceae

AY693999, Subsaxibacter broadyi, type sp., Flavobacteriaceae

AB255369, Sediminibacter furfurosus, type sp., Flavobacteriaceae

AJ278780, Leeuwenhoekiella aequorea, Flavobacteriaceae

AF203475, Leeuwenhoekiella marinoflava, type sp., Flavobacteriaceae

FJ405187, Leeuwenhoekiella palythoae, Flavobacteriaceae

DQ294291, Leeuwenhoekiella blandensis, Flavobacteriaceae

CP002046, Croceibacter atlanticus, type sp., Flavobacteriaceae

AY445073, Muricauda flavescens, Flavobacteriaceae

AF218782, Muricauda ruestringensis, type sp., Flavobacteriaceae

EU156065, Muricauda lutimaris, Flavobacteriaceae

AY445075, Muricauda aquimarina, Flavobacteriaceae

EU888117, Muricauda olearia, Flavobacteriaceae

EU564844, Muricauda lutaonensis, Flavobacteriaceae

HM355805, Muricauda beolgyonensis, Flavobacteriaceae

DQ191182, Croceitalea dokdonensis, Flavobacteriaceae

DQ191183, Croceitalea eckloniae, type sp., Flavobacteriaceae

FJ348473, Spongiibacterium flavum, type sp., Flavobacteriaceae

DQ191180, Flagellimonas eckloniae, type sp., Flavobacteriaceae

DQ167246, Costertonia aggregata, type sp., Flavobacteriaceae

AB121974, Zobellia amurskyensis, Flavobacteriaceae

AB121975, Zobellia laminariae, Flavobacteriaceae

AB121976, Zobellia russellii, Flavobacteriaceae

M62799, Zobellia uliginosa, Flavobacteriaceae

AF208293, Zobellia galactanivorans, type sp., Flavobacteriaceae

AB084262, Kriegella aquimaris, type sp., Flavobacteriaceae

FN554868, Euzebyella saccharophila, type sp., Flavobacteriaceae

AB084261, Pseudozobellia thermophila, type sp., Flavobacteriaceae

EU443206, Muriicola jejuensis, type sp., Flavobacteriaceae

AB264057, Zeaxanthinibacter enoshimensis, type sp., Flavobacteriaceae

AM745437, Eudoraea adriatica, type sp., Flavobacteriaceae

CP001712, Robiginitalea biformata, type sp., Flavobacteriaceae

AB270585, Robiginitalea myxolifaciens, Flavobacteriaceae

AY960749, Maribacter dokdonensis, Flavobacteriaceae

AY271623, Maribacter sedimenticola, type sp., Flavobacteriaceae

EU246691, Maribacter stanieri, Flavobacteriaceae

AM712900, Maribacter forsetii, Flavobacteriaceae

AY271626, Maribacter ulvicola, Flavobacteriaceae

AY271624, Maribacter orientalis, Flavobacteriaceae

AY271625, Maribacter aquivivus, Flavobacteriaceae

AY576654, Pibocella ponti, type sp., Flavobacteriaceae

EU512921, Maribacter antarcticus, Flavobacteriaceae

AY771762, Maribacter arcticus, Flavobacteriaceae

AM497875, Maribacter polysiphoniae, Flavobacteriaceae

AJ575643, Arenibacter palladensis, Flavobacteriaceae

AB080771, Arenibacter troitsensis, Flavobacteriaceae

EF536748, Arenibacter echinorum, Flavobacteriaceae

AY271622, Arenibacter certesii, Flavobacteriaceae

AF052742, Arenibacter latericius, type sp., Flavobacteriaceae

EU999955, Arenibacter nanhaiticus, Flavobacteriaceae

AF001366, Cellulophaga algicola, Flavobacteriaceae

AJ005972, Cellulophaga baltica, Flavobacteriaceae

AB100840, Cellulophaga pacifica, Flavobacteriaceae

EU443205, Cellulophaga tyrosinoxydans, Flavobacteriaceae

AB206957, Sediminicola luteus, type sp., Flavobacteriaceae

CP002534, Cellulophaga lytica, type sp., Flavobacteriaceae

HQ596527, Cellulophaga geojensis, Flavobacteriaceae

AJ005973, Cellulophaga fucicola, Flavobacteriaceae

AY027806, Aequorivita crocea, Flavobacteriaceae

AY027805, Aequorivita lipolytica, Flavobacteriaceae

AY027802, Aequorivita antarctica, type sp., Flavobacteriaceae

EU290153, Aequorivita capsosiphonis, Flavobacteriaceae

AF170749, Aequorivita sublithincola, Flavobacteriaceae

EU642844, Vitellibacter aestuarii, Flavobacteriaceae

AB071382, Vitellibacter vladivostokensis, type sp., Flavobacteriaceae

AB261012, Marixanthomonas ophiurae, type sp., Flavobacteriaceae

EF554364, Ulvibacter antarcticus, Flavobacteriaceae

AY243096, Ulvibacter litoralis, type sp., Flavobacteriaceae

AB602429, Aureitalea marina, type sp., Flavobacteriaceae

AY608409, Gramella echinicola, type sp., Flavobacteriaceae

GQ857650, Gramella gaetbulicola, Flavobacteriaceae

DQ002871, Gramella portivictoriae, Flavobacteriaceae

AY753911, Gramella marina, Flavobacteriaceae

AF536383, Mesonia algae, type sp., Flavobacteriaceae

HM234095, Mesonia ostreae, Flavobacteriaceae

DQ367409, Mesonia mobilis, Flavobacteriaceae

FM882228, Mesonia phycicola , Flavobacteriaceae

DQ191176, Salegentibacter agarivorans, Flavobacteriaceae

AB116148, Salegentibacter holothuriorum, Flavobacteriaceae

M92279, Salegentibacter salegens, type sp., Flavobacteriaceae

EF486353, Salegentibacter salarius, Flavobacteriaceae

AY576653, Salegentibacter mishustinae, Flavobacteriaceae

EF612764, Salegentibacter salinarum, Flavobacteriaceae

AY682200, Salegentibacter flavus, Flavobacteriaceae

FR849911, Psychroflexus gondwanensis, Flavobacteriaceae

FR849911, Psychroflexus gondwanensis, Flavobacteriaceae

U85881, Psychroflexus torquis, type sp., Flavobacteriaceae

EU135715, Psychroflexus sediminis, Flavobacteriaceae

AF513434, Psychroflexus tropicus, Flavobacteriaceae

EU874390, Psychroflexus salinarum, Flavobacteriaceae

FR714910, Psychroflexus halocasei, Flavobacteriaceae

DQ855467, Zunongwangia profunda, type sp., Flavobacteriaceae

EU135614, Salinimicrobium terrae, Flavobacteriaceae

EF520007, Salinimicrobium xinjiangense, Flavobacteriaceae

GQ866112, Salinimicrobium marinum, Flavobacteriaceae

JF340052, Salinimicrobium gaetbulicola, Flavobacteriaceae

DQ640642, Salinimicrobium catena, type sp., Flavobacteriaceae

AY694008, Gillisia illustrilutea, Flavobacteriaceae

AY694007, Gillisia sandarakina, Flavobacteriaceae

AJ440991, Gillisia limnaea, type sp., Flavobacteriaceae

DQ202393, Gillisia myxillae, Flavobacteriaceae

AY694006, Gillisia hiemivivida, Flavobacteriaceae

AY576655, Gillisia mitskevichiae, Flavobacteriaceae

FJ750453, Aquimarina agarilytica, Flavobacteriaceae

HM475137, Aquimarina addita, Flavobacteriaceae

AB517144, Aquimarina macrocephali, Flavobacteriaceae

AY608406, Aquimarina muelleri, type sp., Flavobacteriaceae

M58769, Aquimarina latercula, Flavobacteriaceae

AM113977, Aquimarina intermedia, Flavobacteriaceae

FJ882164, Aquimarina salinaria, Flavobacteriaceae

FJ348470, Aquimarina spongiae, Flavobacteriaceae

HM998910, Aquimarina mytili, Flavobacteriaceae

AY987367, Aquimarina brevivitae, Flavobacteriaceae

DQ003276, Dokdonia donghaensis, type sp., Flavobacteriaceae

AB198086, Dokdonia genika, type sp., Flavobacteriaceae

AB198089, Dokdonia diaphoros, Flavobacteriaceae

AB198088, Dokdonia eikasta, Flavobacteriaceae

AY581113, Flavobacterium antarcticum, Flavobacteriaceae

U85887, Flavobacterium tegetincola, Flavobacteriaceae

AJ440996, Flavobacterium gelidilacus, Flavobacteriaceae

GQ370387, Flavobacterium ponti, Flavobacteriaceae

AJ557887, Flavobacterium frigoris, Flavobacteriaceae

U85889, Flavobacterium gillisiae, Flavobacteriaceae

AJ557886, Flavobacterium degerlachei, Flavobacteriaceae

HQ436467, Flavobacterium urumqiense, Flavobacteriaceae

AF433173, Flavobacterium xinjiangense, Flavobacteriaceae

FJ654474, Flavobacterium sinopsychrotolerans, Flavobacteriaceae

AF030380, Flavobacterium xanthum, Flavobacteriaceae

AB075230, Flavobacterium limicola, Flavobacteriaceae

AB078060, Flavobacterium psychrophilum, Flavobacteriaceae

AM934651, Flavobacterium swingsii, Flavobacteriaceae

EU036219, Flavobacterium tiangeerense, Flavobacteriaceae

AF162266, Flavobacterium frigidarium, Flavobacteriaceae

AB455265, Flavobacterium algicola, Flavobacteriaceae

AJ811961, Flavobacterium fryxellicola, Flavobacteriaceae

AF433174, Flavobacterium omnivorum, Flavobacteriaceae

AJ585428, Flavobacterium psychrolimnae, Flavobacteriaceae

HQ436466, Flavobacterium xueshanense, Flavobacteriaceae

AJ557888, Flavobacterium micromati, Flavobacteriaceae

AM230490, Flavobacterium pectinovorum, Flavobacteriaceae

AB183888, Flavobacterium frigidimaris, Flavobacteriaceae

AM177392, Flavobacterium aquidurense, Flavobacteriaceae

FR774916, Flavobacterium araucananum, Flavobacteriaceae

AM230486, Flavobacterium flevense, Flavobacteriaceae

GQ148878, Flavobacterium myungsuense, Flavobacteriaceae

GQ144413, Flavobacterium yonginense, Flavobacteriaceae

AY581115, Flavobacterium segetis, Flavobacteriaceae

AY581114, Flavobacterium weaverense, Flavobacteriaceae

EU046269, Flavobacterium anhuiense, Flavobacteriaceae

GU564236, Flavobacterium phragmitis, Flavobacteriaceae

AJ318907, Flavobacterium denitrificans, Flavobacteriaceae

DQ372986, Flavobacterium defluvii, Flavobacteriaceae

AM230489, Flavobacterium johnsoniae, Flavobacteriaceae

M62792, Flexibacter aurantiacus, Cytophagaceae

GQ281770, Flavobacterium banpakuense, Flavobacteriaceae

GU138377, Flavobacterium ginsenosidimutans, Flavobacteriaceae

HM627539, Flavobacterium chungbukense, Flavobacteriaceae

GQ281769, Flavobacterium compostarboris, Flavobacteriaceae

DQ222427, Flavobacterium daejeonense, Flavobacteriaceae

EU672803, Flavobacterium glycines, Flavobacteriaceae

DQ178976, Flavobacterium soli, Flavobacteriaceae

EF575563, Flavobacterium resistens, Flavobacteriaceae

EU924275, Flavobacterium chungangense, Flavobacteriaceae

FR774915, Flavobacterium chilense, Flavobacteriaceae

FN669776, Flavobacterium oncorhynchi, Flavobacteriaceae

AM265623, Flavobacterium hercynium, Flavobacteriaceae

AM230491, Flavobacterium saccharophilum, Flavobacteriaceae

M58764, Flavobacterium hydatis, Flavobacteriaceae

L39067, Flavobacterium hibernum, Flavobacteriaceae

AM177616, Flavobacterium reichenbachii, Flavobacteriaceae

DQ515962, Flavobacterium glaciei, Flavobacteriaceae

EU109724, Flavobacterium fluvii, Flavobacteriaceae

AM230492, Flavobacterium succinicans, Flavobacteriaceae

AB180738, Flavobacterium granuli, Flavobacteriaceae

GU295968, Flavobacterium cheonanense, Flavobacteriaceae

GU295967, Flavobacterium koreense, Flavobacteriaceae

GU295971, Flavobacterium chungnamense, Flavobacteriaceae

FJ593904, Flavobacterium macrobrachii, Flavobacteriaceae

DQ889724, Flavobacterium terrigena, Flavobacteriaceae

AM230485, Flavobacterium aquatile, type sp., Flavobacteriaceae

EF407880, Flavobacterium cheniae, Flavobacteriaceae

EU423319, Flavobacterium sasangense, Flavobacteriaceae

EF126993, Flavobacterium cucumis, Flavobacteriaceae

DQ372982, Flavobacterium croceum, Flavobacteriaceae

DQ021903, Flavobacterium saliperosum, Flavobacteriaceae

EU521691, Flavobacterium cauense, Flavobacteriaceae

DQ222428, Flavobacterium suncheonense, Flavobacteriaceae

AB078047, Flavobacterium columnare, Flavobacteriaceae

EF117329, Flavobacterium terrae, Flavobacteriaceae

EU313814, Flavobacterium caeni, Flavobacteriaceae

EF424395, Flavobacterium lindanitolerans, Flavobacteriaceae

M58777, Myroides odoratus, type sp., Flavobacteriaceae

AB176662, Myroides pelagicus, Flavobacteriaceae

GU253339, Myroides phaeus, Flavobacteriaceae

AJ854059, Myroides odoratimimus, Flavobacteriaceae

EU204978, Myroides profundi, Flavobacteriaceae

GQ857652, Myroides marinus, Flavobacteriaceae

AM292800, Flavobacterium ceti, Flavobacteriaceae

AY904351, Flavobacterium indicum, Flavobacteriaceae

GQ988780, Flavobacterium haoranii, Flavobacteriaceae

GQ988780, Flavobacterium haoranii, Flavobacteriaceae

GU073293, Flavobacterium dongtanense, Flavobacteriaceae

AM934661, Flavobacterium rivuli, Flavobacteriaceae

AM934666, Flavobacterium subsaxonicum, Flavobacteriaceae

GQ245972, Flavobacterium beibuense, Flavobacteriaceae

DQ372981, Flavobacterium filum, Flavobacteriaceae

DQ009623, Capnocytophaga leadbetteri, Flavobacteriaceae

X67609, Capnocytophaga sputigena, Flavobacteriaceae

U41350, Capnocytophaga ochracea, type sp., Flavobacteriaceae

X97247, Capnocytophaga haemolytica, Flavobacteriaceae

AY643075, Capnocytophaga canimorsus, Flavobacteriaceae

AY643076, Capnocytophaga cynodegmi, Flavobacteriaceae

X67608, Capnocytophaga gingivalis, Flavobacteriaceae

U41347, Capnocytophaga granulosa, Flavobacteriaceae

Y17612, Coenonia anatina, type sp., Flavobacteriaceae

AB255367, Galbibacter mesophilus, type sp., Flavobacteriaceae

EF660761, Joostella marina, type sp., Flavobacteriaceae

DQ423479, Zhouia amylolytica, type sp., Flavobacteriaceae

FJ463655, Gangjinia marincola, type sp., Flavobacteriaceae

AB362212, Leptobacterium flavescens, type sp., Flavobacteriaceae

EU287913, Lutaonella thermophila, type sp., Flavobacteriaceae

AB255368, Gilvibacter sediminis, type sp., Flavobacteriaceae

HM475136, Nonlabens agnitus, Flavobacteriaceae

GU902979, Nonlabens ulvanivorans, Flavobacteriaceae

DQ017065, Nonlabens dokdonensis, Flavobacteriaceae

FR733714, Nonlabens xylanidelens, type sp., Flavobacteriaceae

DQ064789, Nonlabens spongiae, type sp., Flavobacteriaceae

AY987349, Nonlabens tegetincola, type sp., Flavobacteriaceae

AB206954, Nonlabens sediminis, type sp., Flavobacteriaceae

AY195836, Kordia algicida, type sp., Flavobacteriaceae

GU233518, Kordia periserrulae, Flavobacteriaceae

AB294107, Fulvibacter tottoriensis, type sp., Flavobacteriaceae

EU239499, Aestuariicola saemankumensis, type sp., Flavobacteriaceae

EF108218, Lutimonas vermicola, type sp., Flavobacteriaceae

EF670651, Actibacter sediminis, type sp., Flavobacteriaceae

AM411030, Tenacibaculum discolor, Flavobacteriaceae

AY962294, Tenacibaculum litoreum, Flavobacteriaceae

AM746477, Tenacibaculum gallaicum, Flavobacteriaceae

AM412314, Tenacibaculum adriaticum, Flavobacteriaceae

EU428783, Tenacibaculum crassostreae, Flavobacteriaceae

AY661691, Tenacibaculum lutimaris, Flavobacteriaceae

AB032505, Tenacibaculum amylolyticum, Flavobacteriaceae

AF469612, Tenacibaculum skagerrakense, Flavobacteriaceae

AB032501, Tenacibaculum mesophilum, Flavobacteriaceae

AB078058, Tenacibaculum ovolyticum, Flavobacteriaceae

FN545354, Tenacibaculum dicentrarchi, Flavobacteriaceae

AM746476, Tenacibaculum soleae, Flavobacteriaceae

EF416572, Tenacibaculum aiptasiae, Flavobacteriaceae

DQ314760, Tenacibaculum aestuarii, Flavobacteriaceae

HQ401023, Tenacibaculum geojense, Flavobacteriaceae

FJ490366, Tenacibaculum jejuense, Flavobacteriaceae

DQ822567, Tenacibaculum litopenaei, Flavobacteriaceae

AY189722, Polaribacter butkevichii, Flavobacteriaceae

M61002, Polaribacter irgensii, Flavobacteriaceae

U73726, Polaribacter filamentus, type sp., Flavobacteriaceae

U14586, Polaribacter franzmannii, Flavobacteriaceae

DQ004686, Polaribacter dokdonensis, Flavobacteriaceae

AB078057, Tenacibaculum maritimum, type sp., Flavobacteriaceae

FJ425213, Polaribacter gangjinensis, Flavobacteriaceae

AY962293, Lutibacter litoralis, type sp., Flavobacteriaceae

FJ598048, Lutibacter maritimus , Flavobacteriaceae

HM234096, Lutibacter aestuarii, Flavobacteriaceae

EU290161, Maritimimonas rapanae, type sp., Flavobacteriaceae

EF204460, Epilithonimonas lactis , Flavobacteriaceae

AF493696, Epilithonimonas tenax, type sp., Flavobacteriaceae

DQ166169, Chryseobacterium xinjiangense, Flavobacteriaceae

EU869190, Chryseobacterium piscicola, Flavobacteriaceae

AM748690, Chryseobacterium aquaticum, Flavobacteriaceae

FJ932652, Chryseobacterium greenlandense, Flavobacteriaceae

EU999735, Chryseobacterium piperi, Flavobacteriaceae

EF591302, Chryseobacterium soli, Flavobacteriaceae

GU138380, Chryseobacterium ginsenosidimutans, Flavobacteriaceae

AY883415, Chryseobacterium soldanellicola, Flavobacteriaceae

AY468447, Chryseobacterium balustinum, Flavobacteriaceae

AM040439, Chryseobacterium piscium, Flavobacteriaceae

AJ271009, Chryseobacterium scophthalmum, Flavobacteriaceae

AY468448, Chryseobacterium indoltheticum, Flavobacteriaceae

EF076759, Chryseobacterium daeguense, Flavobacteriaceae

AM773820, Chryseobacterium gregarium, Flavobacteriaceae

DQ673672, Chryseobacterium hagamense, Flavobacteriaceae

AY883416, Chryseobacterium taeanense, Flavobacteriaceae

AJ843132, Chryseobacterium taichungense, Flavobacteriaceae

DQ318789, Chryseobacterium taiwanense, Flavobacteriaceae

DQ256729, Chryseobacterium wanjuense, Flavobacteriaceae

AJ457206, Chryseobacterium daecheongense, Flavobacteriaceae

AJ309324, Chryseobacterium defluvii, Flavobacteriaceae

AM232810, Chryseobacterium gambrini, Flavobacteriaceae

AY315443, Chryseobacterium formosense, Flavobacteriaceae

AM489609, Chryseobacterium luteum, Flavobacteriaceae

AB193101, Chryseobacterium shigense, Flavobacteriaceae

AJ871397, Chryseobacterium vrystaatense, Flavobacteriaceae

DQ673671, Chryseobacterium elymi, Flavobacteriaceae

DQ673674, Chryseobacterium lathyri, Flavobacteriaceae

EF204451, Chryseobacterium oranimense, Flavobacteriaceae

DQ673670, Chryseobacterium rhizosphaerae, Flavobacteriaceae

FN674441, Chryseobacterium oncorhynchi, Flavobacteriaceae

AM232806, Chryseobacterium ureilyticum, Flavobacteriaceae

AJ271010, Chryseobacterium joostei, Flavobacteriaceae

EF591303, Chryseobacterium jejuense, Flavobacteriaceae

HM212415, Chryseobacterium vietnamense, Flavobacteriaceae

EF644913, Chryseobacterium aquifrigidense, Flavobacteriaceae

EF154516, Chryseobacterium flavum, Flavobacteriaceae

AM232812, Chryseobacterium gleum, type sp., Flavobacteriaceae

FN398101, Chryseobacterium arthrosphaerae, Flavobacteriaceae

AM232813, Chryseobacterium indologenes, Flavobacteriaceae

FN554975, Chryseobacterium culicis, Flavobacteriaceae

DQ336714, Chryseobacterium caeni, Flavobacteriaceae

EF685359, Chryseobacterium hungaricum, Flavobacteriaceae

AM159183, Chryseobacterium hispanicum, Flavobacteriaceae

EF204446, Chryseobacterium bovis, Flavobacteriaceae

AM261868, Chryseobacterium hominis, Flavobacteriaceae

GQ259742, Chryseobacterium yonginense, Flavobacteriaceae

GU345045, Chryseobacterium chaponense, Flavobacteriaceae

EU360967, Chryseobacterium palustre, Flavobacteriaceae

AY553293, Chryseobacterium antarcticum, Flavobacteriaceae

AY553294, Chryseobacterium jeonii, Flavobacteriaceae

FN297836, Chryseobacterium treverense, Flavobacteriaceae

EU516352, Chryseobacterium solincola, Flavobacteriaceae

AM982786, Chryseobacterium anthropi, Flavobacteriaceae

AF344179, Chryseobacterium koreense, Flavobacteriaceae

EF204450, Chryseobacterium haifense, Flavobacteriaceae

EU360966, Chryseobacterium humi, Flavobacteriaceae

EF554366, Chryseobacterium marinum, Flavobacteriaceae

AM232809, Chryseobacterium pallidum, Flavobacteriaceae

AJ534853, Chryseobacterium molle, Flavobacteriaceae

AJ575430, Cloacibacterium normanense, type sp., Flavobacteriaceae

EU581834, Cloacibacterium rupense, Flavobacteriaceae

U60101, Riemerella anatipestifer, type sp., Flavobacteriaceae

AF181448, Riemerella columbina, Flavobacteriaceae

EU718058, Planobacterium taklimakanense, type sp., Flavobacteriaceae

FJ713810, Soonwooa buanensis, type sp., Flavobacteriaceae

EF426425, Elizabethkingia anophelis, type sp., Flavobacteriaceae

AB071953, Elizabethkingia miricola, Flavobacteriaceae

AJ704540, Elizabethkingia meningoseptica, type sp., Flavobacteriaceae

AM177497, Empedobacter brevis, type sp., Flavobacteriaceae

AM084341, Wautersiella falsenii, type sp., Flavobacteriaceae

CP002455, Weeksella virosa, type sp., Flavobacteriaceae

U87101, Ornithobacterium rhinotracheale, type sp., Flavobacteriaceae

FJ424814, Wandonia haliotis , Cryomorphaceae

AF493694, Fluviicola taffensis, type sp., Cryomorphaceae

AF521195, Brumimicrobium glaciale, type sp., Cryomorphaceae

AB176674, Lishizhenia caseinilytica, type sp., Cryomorphaceae

EU183317, Lishizhenia tianjinensis, Cryomorphaceae

AB078042, Crocinitomix catalasitica, type sp., Cryomorphaceae

Bacteroidales (143)

Bacteroidaceae and Prevotellaceae (89)

Prevotellaceae (50)

X81877, Hallella seregens, type sp., Prevotellaceae

X81876, Prevotella dentalis, Prevotellaceae

AY350613, Prevotella bergensis, Prevotellaceae

AY840553, Prevotella baroniae, Prevotellaceae

L16477, Prevotella buccae, Prevotellaceae

AB477014, Prevotella dentasini, Prevotellaceae

AY323524, Prevotella denticola, Prevotellaceae

AB182483, Prevotella multiformis, Prevotellaceae

FJ545433, Prevotella fusca, Prevotellaceae

FJ545434, Prevotella scopos, Prevotellaceae

CP002122, Prevotella melaninogenica, type sp., Prevotellaceae

L16473, Prevotella veroralis, Prevotellaceae

EU126661, Prevotella histicola, Prevotellaceae

EF534314, Prevotella maculosa, Prevotellaceae

L16474, Prevotella oris, Prevotellaceae

AB108826, Prevotella salivae, Prevotellaceae

AJ011683, Prevotella albensis, Prevotellaceae

L16472, Prevotella oulorum, Prevotellaceae

AB064923, Prevotella copri, Prevotellaceae

AB429504, Prevotella falsenii, Prevotellaceae

X73963, Prevotella nigrescens, Prevotellaceae

X73965, Prevotella intermedia, Prevotellaceae

AB480534, Prevotella aurantiaca , Prevotellaceae

Y13105, Prevotella pallens, Prevotellaceae

L16483, Prevotella disiens, Prevotellaceae

L16465, Prevotella corporis, Prevotellaceae

AM422125, Prevotella amnii, Prevotellaceae

L16475, Prevotella bivia, Prevotellaceae

AB078827, Prevotella paludivivens, Prevotellaceae

AY836508, Prevotella loescheii, Prevotellaceae

AB108825, Prevotella shahii, Prevotellaceae

AF481227, Prevotella marshii, Prevotellaceae

FJ825149, Prevotella saccharolytica, Prevotellaceae

AY323522, Prevotella oralis, Prevotellaceae

AJ005635, Prevotella enoeca, Prevotellaceae

AB278593, Prevotella pleuritidis, Prevotellaceae

AB244774, Prevotella stercorea, Prevotellaceae

L16476, Prevotella buccalis, Prevotellaceae

DQ518919, Prevotella timonensis, Prevotellaceae

AF481228, Prevotella micans, Prevotellaceae

AY957555, Prevotella nanceiensis, Prevotellaceae

AJ011682, Prevotella brevis, Prevotellaceae

L16482, Prevotella ruminicola, Prevotellaceae

AB200414, Prevotella multisaccharivorax, Prevotellaceae

AJ006457, Prevotella bryantii, Prevotellaceae

AB078826, Xylanibacter oryzae, type sp., Prevotellaceae

AJ005634, Prevotella tannerae, Prevotellaceae

AB331896, Paraprevotella clara, type sp., Prevotellaceae

AB331897, Paraprevotella xylaniphila, Prevotellaceae

EU694176, Phocaeicola abscessus, type sp., Unclassified Bacteroidales

AB253731, Bacteroides salanitronis, Bacteroidaceae

AB253726, Bacteroides barnesiae, Bacteroidaceae

AB260026, Bacteroides coprophilus, Bacteroidaceae

AB200224, Bacteroides coprocola, Bacteroidaceae

AB200217, Bacteroides plebeius, Bacteroidaceae

AB242142, Bacteroides dorei, Bacteroidaceae

AJ867050, Bacteroides vulgatus, Bacteroidaceae

AY126616, Bacteroides massiliensis, Bacteroidaceae

GQ456204, Bacteroides sartorii, Bacteroidaceae

AB298727, Bacteroides paurosaccharolyticus, Bacteroidaceae

AB200227, Bacteroides helcogenes, Bacteroidaceae

L16487, Prevotella heparinolytica, Prevotellaceae

L16488, Prevotella zoogleoformans, Prevotellaceae

AB490802, Bacteroides fluxus, Bacteroidaceae

AB531489, Bacteroides rodentium, Bacteroidaceae

AB050110, Bacteroides uniformis, Bacteroidaceae

AB363973, Bacteroides graminisolvens, Bacteroidaceae

AY608696, Bacteroides salyersiae, Bacteroidaceae

AY608697, Bacteroides nordii, Bacteroidaceae

AE015928, Bacteroides thetaiotaomicron , Bacteroidaceae

GQ496624, Bacteroides faecis, Bacteroidaceae

AB200229, Bacteroides pyogenes, Bacteroidaceae

AB222699, Bacteroides finegoldii, Bacteroidaceae

AB021164, Bacteroides acidifaciens, Bacteroidaceae

AB574480, Bacteroides faecichinchillae, Bacteroidaceae

X83951, Bacteroides caccae, Bacteroidaceae

AB050108, Bacteroides ovatus, Bacteroidaceae

AM230650, Bacteroides xylanisolvens, Bacteroidaceae

AM230650, Bacteroides xylanisolvens, Bacteroidaceae

CR626927, Bacteroides fragilis , type sp., Bacteroidaceae

AB490803, Bacteroides oleiciplenus, Bacteroidaceae

AB574481, Bacteroides stercorirosoris, Bacteroidaceae

AJ583243, Bacteroides cellulosilyticus, Bacteroidaceae

AB214328, Bacteroides intestinalis, Bacteroidaceae

AB490801, Bacteroides clarus, Bacteroidaceae

AB253732, Bacteroides gallinarum, Bacteroidaceae

X83953, Bacteroides stercoris, Bacteroidaceae

AB050107, Bacteroides eggerthii, Bacteroidaceae

AF319778, Bacteroides coprosuis, Bacteroidaceae

AB264625, Bacteroides propionicifaciens, Bacteroidaceae

Porphyromonadaceae (31)

L26102, Porphyromonas circumdentaria, Porphyromonadaceae

GU233445, Porphyromonas gingivicanis, Porphyromonadaceae

AY253728, Porphyromonas endodontalis, Porphyromonadaceae

L16490, Porphyromonas asaccharolytica, type sp., Porphyromonadaceae

AY570514, Porphyromonas uenonis, Porphyromonadaceae

L16494, Porphyromonas macacae, Porphyromonadaceae

L16493, Porphyromonas levii, Porphyromonadaceae

AY968205, Porphyromonas somerae, Porphyromonadaceae

EU414673, Porphyromonas bennonis, Porphyromonadaceae

X76259, Porphyromonas cangingivalis, Porphyromonadaceae

AB525416, Porphyromonas canoris, Porphyromonadaceae

X76260, Porphyromonas cansulci, Porphyromonadaceae

GU233446, Porphyromonas crevioricanis, Porphyromonadaceae

AB035459, Porphyromonas gingivalis, Porphyromonadaceae

AF208290, Porphyromonas gulae, Porphyromonadaceae

X82823, Porphyromonas catoniae, Porphyromonadaceae

AB035460, Tannerella forsythia, type sp., Porphyromonadaceae

AB261128, Parabacteroides johnsonii, Porphyromonadaceae

AB238928, Parabacteroides merdae, Porphyromonadaceae

AB238922, Parabacteroides distasonis, type sp., Porphyromonadaceae

AY974070, Parabacteroides goldsteinii, Porphyromonadaceae

AB470343, Parabacteroides gordonii, Porphyromonadaceae

Y18530, Dysgonomonas gadei, type sp., Porphyromonadaceae

FN356023, Dysgonomonas hofstadii, Porphyromonadaceae

AJ319867, Dysgonomonas mossii, Porphyromonadaceae

AY570690, Petrimonas sulfuriphila, type sp., Porphyromonadaceae

AY742226, Proteiniphilum acetatigenes, type sp., Porphyromonadaceae

U41355, Dysgonomonas capnocytophagoides, Porphyromonadaceae

AB078842, Paludibacter propionicigenes, type sp., Porphyromonadaceae

AB370251, Barnesiella intestinihominis, Porphyromonadaceae

AB267809, Barnesiella viscericola, type sp., Porphyromonadaceae

AB443948, Butyricimonas synergistica, type sp., Porphyromonadaceae

AB443949, Butyricimonas virosa, Porphyromonadaceae

AY560020, Odoribacter denticanis, Porphyromonadaceae

AB490805, Odoribacter laneus, Porphyromonadaceae

L16496, Odoribacter splanchnicus, type sp., Porphyromonadaceae

HQ697914, Mangroviflexus xiamenensis, type sp., Marinilabiliaceae

AB362265, Geofilum rubicundum, type sp., Marinilabiliaceae

GQ922844, Natronoflexus pectinivorans, type sp., Marinilabiliaceae

FR733683, Cytophaga xylanolytica, Cytophagaceae

AJ418048, Anaerophaga thermohalophila, type sp., Marinilabiliaceae

AB517713, Marinilabilia salmonicolor, type sp., Marinilabiliaceae

AJ784993, Alkaliflexus imshenetskii, type sp., Marinilabiliaceae

GU269545, Meniscus glaucopis, type sp., Cytophagaceae

AY918928, Prolixibacter bellariivorans, type sp., Unclassified Bacteroidetes

GQ200190, Sunxiuqinia elliptica, type sp., Unclassified Bacteroidales

FJ394546, Marinifilum fragile, type sp., Unclassified Bacteroidetes

M58766, Cytophaga fermentans, Cytophagaceae

Rikenellaceae (6)

AY643083, Alistipes finegoldii, Rikenellaceae

AY974072, Alistipes shahii, Rikenellaceae

L16497, Alistipes putredinis, type sp., Rikenellaceae

AY974071, Alistipes onderdonkii, Rikenellaceae

AB490804, Alistipes indistinctus, Rikenellaceae

L16498, Rikenella microfusus, type sp., Rikenellaceae

Cryomorphaceae (3)

AB125062, Owenweeksia hongkongensis, type sp., Cryomorphaceae

HQ172900, Schleiferia thermophila, Schleiferiaceae

AF170738, Cryomorpha ignava, type sp., Cryomorphaceae

Chitinophagaceae (37)

FJ177532, Ferruginibacter lapsinanis, Chitinophagaceae

FJ177530, Ferruginibacter alkalilentus, type sp., Chitinophagaceae

EU521690, Lacibacter cauensis, type sp., Chitinophagaceae

HM130561, Flavitalea populi, type sp., Chitinophagaceae

AB267476, Flavisolibacter ginsengiterrae, type sp., Chitinophagaceae

AB267477, Flavisolibacter ginsengisoli, Chitinophagaceae

DQ244077, Niastella koreensis, type sp., Chitinophagaceae

DQ244076, Niastella yeongjuensis, Chitinophagaceae

EU877262, Niastella populi , Chitinophagaceae

DQ457019, Niabella aurantiaca, type sp., Chitinophagaceae

GU291295, Niabella tibetensis, Chitinophagaceae

EF592608, Niabella soli, Chitinophagaceae

EU616816, Niabella ginsengisoli, Chitinophagaceae

FJ457040, Niabella yanshanensis, Chitinophagaceae

AM230484, Terrimonas ferruginea, type sp., Chitinophagaceae

FJ347757, Terrimonas aquatica, Chitinophagaceae

AB192292, Terrimonas lutea, Chitinophagaceae

AB267478, Segetibacter koreensis, type sp., Chitinophagaceae

GQ421847, Segetibacter aerophilus, Chitinophagaceae

FN665659, Hydrotalea flava, type sp., Chitinophagaceae

EF407879, Sediminibacterium salmoneum, type sp., Chitinophagaceae

AB362776, Filimonas lacunae, type sp., Chitinophagaceae

EU877263, Parasegetibacter luojiensis, type sp., Chitinophagaceae

EU854577, Flavihumibacter petaseus, type sp., Chitinophagaceae

AM237311, Chitinophaga arvensicola, Chitinophagaceae

AB264798, Chitinophaga ginsengisegetis, Chitinophagaceae

EU714260, Chitinophaga niastensis, Chitinophagaceae

FJ750951, Chitinophaga eiseniae, Chitinophagaceae

AB278570, Chitinophaga terrae, Chitinophagaceae

AB078055, Chitinophaga japonensis, Chitinophagaceae

FM865977, Chitinophaga rupis, Chitinophagaceae

AB078049, Chitinophaga filiformis, Chitinophagaceae

AB245374, Chitinophaga ginsengisoli, Chitinophagaceae

AF078775, Chitinophaga pinensis, type sp., Chitinophagaceae

DQ062743, Chitinophaga skermanii, Chitinophagaceae

AB078066, Chitinophaga sancti, Chitinophagaceae

AB078066, Chitinophaga sancti, Chitinophagaceae

EU714259, Chitinophaga niabensis, Chitinophagaceae

Saprospiraceae (10)

EF554367, Lewinella antarctica, Saprospiraceae

AB301494, Lewinella lutea, Saprospiraceae

AM286229, Lewinella agarilytica, Saprospiraceae

AB301495, Lewinella marina, Saprospiraceae

AF039295, Lewinella persica, Saprospiraceae

AF039292, Lewinella cohaerens, type sp., Saprospiraceae

AF039294, Lewinella nigricans, Saprospiraceae

AJ784892, Haliscomenobacter hydrossis, type sp., Saprospiraceae

AB245933, Aureispira marina, type sp., Saprospiraceae

AB278130, Aureispira maritima, Saprospiraceae

Sphingobacteriaceae (86)

AM491371, Pedobacter hartonius, Sphingobacteriaceae

AM491369, Pedobacter westerhofensis, Sphingobacteriaceae

AJ438174, Pedobacter piscium, Sphingobacteriaceae

HM448033, Sphingobacterium antarcticum, Sphingobacteriaceae

AJ438170, Pedobacter cryoconitis, Sphingobacteriaceae

AJ583425, Pedobacter himalayensis, Sphingobacteriaceae

EF100697, Pedobacter insulae, Sphingobacteriaceae

DQ092871, Pedobacter koreensis, Sphingobacteriaceae

HM640986, Pedobacter boryungensis, Sphingobacteriaceae

AB245371, Pedobacter ginsengisoli, Sphingobacteriaceae

AJ786798, Pedobacter caeni, Sphingobacteriaceae

AM491372, Pedobacter steynii, Sphingobacteriaceae

AM491368, Pedobacter duraquae, Sphingobacteriaceae

AM491370, Pedobacter metabolipauper, Sphingobacteriaceae

AJ438171, Pedobacter africanus, Sphingobacteriaceae

AJ438172, Pedobacter heparinus, type sp., Sphingobacteriaceae

AB245368, Pedobacter panaciterrae, Sphingobacteriaceae

EU030686, Pedobacter nyackensis, Sphingobacteriaceae

AM114396, Pedobacter aquatilis, Sphingobacteriaceae

EU030688, Pedobacter alluvionis, Sphingobacteriaceae

DQ112353, Pedobacter roseus, Sphingobacteriaceae

DQ235228, Pedobacter sandarakinus, Sphingobacteriaceae

EF660751, Pedobacter agri, Sphingobacteriaceae

AM279215, Pedobacter soli, Sphingobacteriaceae

EU030687, Pedobacter borealis, Sphingobacteriaceae

DQ097274, Pedobacter suwonensis, Sphingobacteriaceae

DQ889723, Pedobacter terrae, Sphingobacteriaceae

AM279214, Pedobacter rhizosphaerae, Sphingobacteriaceae

AB264126, Nubsella zeaxanthinifaciens, type sp., Sphingobacteriaceae

AB267722, Pedobacter daechungensis, Sphingobacteriaceae

EF446146, Pedobacter lentus, Sphingobacteriaceae

EF446147, Pedobacter terricola, Sphingobacteriaceae

HM051286, Pedobacter arcticus, Sphingobacteriaceae

AJ438173, Pedobacter saltans, Sphingobacteriaceae

EU585748, Pedobacter glucosidilyticus, Sphingobacteriaceae

AJ438175, Flavobacterium mizutaii, Flavobacteriaceae

AB249372, Sphingobacterium daejeonense, Sphingobacteriaceae

FN908501, Sphingobacterium lactis, Sphingobacteriaceae

GQ339910, Sphingobacterium bambusae, Sphingobacteriaceae

FJ816788, Sphingobacterium shayense, Sphingobacteriaceae

GQ988781, Sphingobacterium wenxiniae, Sphingobacteriaceae

AB244764, Sphingobacterium composti, Sphingobacteriaceae

FN908502, Sphingobacterium alimentarium, Sphingobacteriaceae

JF731241, Sphingobacterium nematocida, Sphingobacteriaceae

EF090267, Sphingobacterium spiritivorum, type sp., Sphingobacteriaceae

AB100738, Sphingobacterium multivorum, Sphingobacteriaceae

EU046272, Sphingobacterium siyangense, Sphingobacteriaceae

AY787820, Sphingobacterium canadense, Sphingobacteriaceae

AJ438177, Sphingobacterium thalpophilum, Sphingobacteriaceae

EU364817, Sphingobacterium anhuiense, Sphingobacteriaceae

AB361248, Sphingobacterium kitahiroshimense, Sphingobacteriaceae

AJ438176, Sphingobacterium faecium, Sphingobacteriaceae

AB267716, Olivibacter ginsengisoli, Sphingobacteriaceae

AB267714, Olivibacter terrae, Sphingobacteriaceae

AB267715, Olivibacter soli, Sphingobacteriaceae

AM407725, Pseudosphingobacterium domesticum, type sp., Sphingobacteriaceae

DQ680836, Parapedobacter koreensis, type sp., Sphingobacteriaceae

EF151805, Parapedobacter soli, Sphingobacteriaceae

FJ754320, Parapedobacter luteus, Sphingobacteriaceae

DQ421387, Olivibacter sitiensis, type sp., Sphingobacteriaceae

HM021726, Olivibacter oleidegradans, Sphingobacteriaceae

GQ161990, Pedobacter bauzanensis, Sphingobacteriaceae

AB267720, Pedobacter composti, Sphingobacteriaceae

EU109726, Pedobacter oryzae, Sphingobacteriaceae

HM627214, Mucilaginibacter angelicae, Sphingobacteriaceae

HM748604, Mucilaginibacter polysacchareus, Sphingobacteriaceae

EU672804, Mucilaginibacter gossypii, Sphingobacteriaceae

EU672805, Mucilaginibacter gossypiicola, Sphingobacteriaceae

EU109722, Mucilaginibacter oryzae, Sphingobacteriaceae

AB330392, Mucilaginibacter kameinonensis, Sphingobacteriaceae

GQ144415, Mucilaginibacter myungsuensis, Sphingobacteriaceae

EU729366, Mucilaginibacter ximonensis, Sphingobacteriaceae

AB267719, Mucilaginibacter composti, Sphingobacteriaceae

GU139697, Mucilaginibacter dorajii, Sphingobacteriaceae

AM490403, Mucilaginibacter gracilis, Sphingobacteriaceae

AM490402, Mucilaginibacter paludis, type sp., Sphingobacteriaceae

HM061614, Mucilaginibacter boryungensis, Sphingobacteriaceae

FN400859, Mucilaginibacter mallensis, Sphingobacteriaceae

DQ234446, Mucilaginibacter lappiensis, Sphingobacteriaceae

JF701183, Mucilaginibacter soli, Sphingobacteriaceae

HQ455786, Mucilaginibacter lutimaris, Sphingobacteriaceae

EU747841, Mucilaginibacter rigui, Sphingobacteriaceae

FN400860, Mucilaginibacter frigoritolerans, Sphingobacteriaceae

AB267717, Mucilaginibacter daejeonensis, Sphingobacteriaceae

AB078046, Solitalea canadensis, Sphingobacteriaceae

EU787448, Solitalea koreensis, type sp., Sphingobacteriaceae

Cytophagaceae and Cyclobacteriaceae (81)

Cyclobacteriaceae (37)

AJ744861, Aquiflexum balticum, type sp., Cyclobacteriaceae

FN421478, Fontibacter flavus, type sp., Cyclobacteriaceae

FM883672, Indibacter alkaliphilus, type sp., Cyclobacteriaceae

EU685336, Belliella pelovolcani, Cyclobacteriaceae

AJ564643, Belliella baltica, type sp., Cyclobacteriaceae

FM991866, Nitritalea halalkaliphila, type sp., Cyclobacteriaceae

DQ112660, Rhodonellum psychrophilum, type sp., Cytophagaceae

GU254164, Litoribacter ruber, type sp., Cytophagaceae

GU254164, Litoribacter ruber, type sp., Cytophagaceae

AY960985, Cyclobacterium amurskyense, Cyclobacteriaceae

AY533665, Cyclobacterium marinum, type sp., Cyclobacteriaceae

DQ534063, Cyclobacterium lianum, Cyclobacteriaceae

DQ185611, Echinicola pacifica, type sp., Cyclobacteriaceae

DQ645421, Echinicola vietnamensis, Cyclobacteriaceae

GU339180, Echinicola jeungdonensis, Cyclobacteriaceae

AY533663, Algoriphagus marincola, Cyclobacteriaceae

EF488486, Algoriphagus hitonicola, Cyclobacteriaceae

EF392675, Algoriphagus vanfongensis, Cyclobacteriaceae

AY264840, Algoriphagus ornithinivorans, Cyclobacteriaceae

GU072591, Algoriphagus faecimaris, Cyclobacteriaceae

HQ401024, Algoriphagus namhaensis, Cyclobacteriaceae

AJ575265, Algoriphagus chordae, Cyclobacteriaceae

AY835922, Algoriphagus locisalis, Cyclobacteriaceae

AJ575263, Algoriphagus winogradskyi, Cyclobacteriaceae

AY699794, Algoriphagus yeomjeoni, Cyclobacteriaceae

AJ575264, Algoriphagus aquimarinus, Cyclobacteriaceae

AJ608641, Algoriphagus ratkowskyi, type sp., Cyclobacteriaceae

AJ577141, Algoriphagus antarcticus, Cyclobacteriaceae

AY264839, Algoriphagus halophilus, Cyclobacteriaceae

FJ669216, Algoriphagus lutimaris, Cyclobacteriaceae

AB197852, Algoriphagus boritolerans, Cyclobacteriaceae

EF217418, Algoriphagus jejuensis, Cyclobacteriaceae

DQ178979, Algoriphagus terrigena, Cyclobacteriaceae

AJ717393, Algoriphagus alkaliphilus, Cyclobacteriaceae

EU161637, Algoriphagus aquaeductus, Cyclobacteriaceae

EU313811, Algoriphagus aquatilis, Cyclobacteriaceae

AY264838, Algoriphagus mannitolivorans, Cyclobacteriaceae

FJ231215, Algoriphagus olei, Cyclobacteriaceae

HM140980, Mongoliitalea lutea, type sp., Cyclobacteriaceae

EU360597, Dyadobacter alkalitolerans, Cytophagaceae

GQ131577, Dyadobacter psychrophilus, Cytophagaceae

AB245369, Dyadobacter ginsengisoli, Cytophagaceae

EF017660, Dyadobacter koreensis, Cytophagaceae

AB272165, Persicitalea jodogahamensis, type sp., Cytophagaceae

AJ619978, Dyadobacter hamtensis, Cytophagaceae

AJ821885, Dyadobacter crusticola, Cytophagaceae

DQ335125, Dyadobacter beijingensis, Cytophagaceae

GQ241324, Dyadobacter soli, Cytophagaceae

AF137029, Dyadobacter fermentans, type sp., Cytophagaceae

DQ372980, Runella defluvii, Cytophagaceae

DQ372985, Runella limosa, Cytophagaceae

AF137381, Runella zeae, Cytophagaceae

M62786, Runella slithyformis, type sp., Cytophagaceae

AM000023, Spirosoma linguale, type sp., Cytophagaceae

EF507900, Spirosoma rigui, Cytophagaceae

EF451726, Spirosoma luteum, Cytophagaceae

EF451725, Spirosoma spitsbergense, Cytophagaceae

EU370956, Spirosoma panaciterrae, Cytophagaceae

GQ355622, Fibrisoma limi, type sp., Cytophagaceae

GQ141052, Fibrella aestuarina, type sp., Cytophagaceae

EF635010, Rudanella lutea, type sp., Cytophagaceae

FN391025, Larkinella arboricola, Cytophagaceae

AM000022, Larkinella insperata, type sp., Cytophagaceae

GQ246692, Larkinella bovis, Cytophagaceae

AJ535729, Arcicella aquatica, type sp., Cytophagaceae

AM948969, Arcicella rosea, Cytophagaceae

FJ593908, Arcicella aurantiaca, Cytophagaceae

M62787, Flectobacillus major, type sp., Cytophagaceae

EU420062, Flectobacillus roseus, Cytophagaceae

DQ112352, Flectobacillus lacus, Cytophagaceae

FJ177421, Siphonobacter aquaeclarae, type sp., Cytophagaceae

AB245370, Emticicia ginsengisoli, Cytophagaceae

AY904352, Emticicia oligotrophica, type sp., Cytophagaceae

AY854022, Leadbetterella byssophila, type sp., Cytophagaceae

AB078065, Flexibacter ruber, Cytophagaceae

GU117702, Ohtaekwangia koreensis, type sp., Unclassified Bacteroidetes

GU117703, Ohtaekwangia kribbensis, Unclassified Bacteroidetes

M62794, Flexibacter flexilis, type sp., Cytophagaceae

D12658, Cytophaga aurantiaca, Cytophagaceae

CP000383, Cytophaga hutchinsonii , type sp., Cytophagaceae

AJ310654, Sporocytophaga myxococcoides, type sp., Cytophagaceae

EU004198, Rhodocytophaga aerolata, type sp., Cytophagaceae

FN396961, Cesiribacter andamanensis, type sp., Flammeovirgaceae

HM775387, Cesiribacter roseus, Flammeovirgaceae

AB078072, Marivirga tractuosa, type sp., Flammeovirgaceae

AB078081, Marivirga sericea, Flammeovirgaceae

AB058919, Reichenbachiella agariperforans, type sp., Flammeovirgaceae

GU143096, Reichenbachiella faecimaris, Flammeovirgaceae

DQ836305, Fulvivirga kasyanovii, type sp., Flammeovirgaceae

DQ080995, Fabibacter halotolerans, type sp., Flammeovirgaceae

DQ080996, Roseivirga spongicola, Flammeovirgaceae

AY753206, Roseivirga echinicomitans, Flammeovirgaceae

AY608410, Roseivirga ehrenbergii, type sp., Flammeovirgaceae

AB078079, Marinoscillum furvescens, Flammeovirgaceae

DQ660388, Marinoscillum pacificum, type sp., Flammeovirgaceae

AM746475, Ekhidna lutea, type sp., Cytophagaceae

AB078048, Flexibacter elegans, Cytophagaceae

AB078062, Flexibacter roseolus, Cytophagaceae

AB078080, Microscilla marina, type sp., Cytophagaceae

Flammeovirgaceae (13)

AB247553, Flammeovirga aprica, type sp., Flammeovirgaceae

AB078078, Flammeovirga arenaria, Flammeovirgaceae

AB251933, Flammeovirga kamogawensis, Flammeovirgaceae

HQ412594, Flammeovirga pacifica, Flammeovirgaceae

AB247554, Flammeovirga yaeyamensis, Flammeovirgaceae

AB276355, Perexilibacter aurantiacus, type sp., Flammeovirgaceae

AB359907, Limibacter armeniacum, type sp., Flammeovirgaceae

AB255370, Sediminitomix flava, type sp., Flammeovirgaceae

AB078077, Flexithrix dorotheae, type sp., Flammeovirgaceae

AB265192, Rapidithrix thailandica, type sp., Flammeovirgaceae

AB260929, Persicobacter diffluens, type sp., Flammeovirgaceae

AB260934, Persicobacter psychrovividus, Flammeovirgaceae

AB572584, Aureibacter tunicatorum, type.sp, Flammeovirgaceae

AB078056, Flexibacter litoralis, Cytophagaceae

AB078059, Flexibacter polymorphus, Cytophagaceae

Y08956, Thermonema rossianum, Flammeovirgaceae

EU155012, Hymenobacter antarcticus, Cytophagaceae

GQ454806, Hymenobacter glaciei, Cytophagaceae

AB251884, Hymenobacter soli, Cytophagaceae

HM032898, Hymenobacter metalli, Cytophagaceae

HM032897, Hymenobacter flocculans, Cytophagaceae

HM032897, Hymenobacter flocculans, Cytophagaceae

DQ888329, Hymenobacter xinjiangensis, Cytophagaceae

DQ089669, Hymenobacter rigui, Cytophagaceae

HM032896, Hymenobacter perfusus, Cytophagaceae

Y18836, Hymenobacter gelipurpurascens, Cytophagaceae

GU808562, Hymenobacter yonginensis, Cytophagaceae

DQ177475, Hymenobacter psychrotolerans, Cytophagaceae

AJ276901, Hymenobacter aerophilus, Cytophagaceae

GQ131579, Hymenobacter psychrophilus, Cytophagaceae

Y17356, Hymenobacter actinosclerus, Cytophagaceae

AJ549285, Hymenobacter norwichensis, Cytophagaceae

Y18837, Hymenobacter chitinivorans, Cytophagaceae

GQ454797, Hymenobacter elongatus, Cytophagaceae

Y18833, Hymenobacter roseosalivarius, type sp., Cytophagaceae

EU155009, Hymenobacter algoricola, Cytophagaceae

EU155015, Hymenobacter fastidiosus, Cytophagaceae

EU370958, Hymenobacter daecheongensis, Cytophagaceae

EU325941, Hymenobacter deserti, Cytophagaceae

Y18835, Hymenobacter ocellatus, Cytophagaceae

EU682684, Adhaeribacter terreus, Cytophagaceae

AJ626894, Adhaeribacter aquaticus, type sp., Cytophagaceae

GQ421846, Adhaeribacter aerolatus, Cytophagaceae

GQ421850, Adhaeribacter aerophilus, Cytophagaceae

FJ897494, Pontibacter niistensis, Cytophagaceae

HQ223078, Pontibacter populi, Cytophagaceae

DQ888330, Pontibacter korlensis, Cytophagaceae

AM049256, Pontibacter roseus, Cytophagaceae

AY989908, Pontibacter actiniarum, type sp., Cytophagaceae

DQ672723, Pontibacter akesuensis, Cytophagaceae

FJ004994, Pontibacter xinjiangensis, Cytophagaceae

EU008564, Balneola alkaliphila, Chitinophagaceae

AY576749, Balneola vulgaris, type sp., Chitinophagaceae

EF988655, Gracilimonas tropica, type sp., Chitinophagaceae

HM153810, Fodinibius salinus, type sp., Unclassified Sphingobacteriales

Rhodothermaceae (7)

HQ197982, Salinibacter iranicus, Rhodothermaceae

HQ197983, Salinibacter luteus, Rhodothermaceae

CP000159, Salinibacter ruber, type sp., Rhodothermaceae

EU426570, Salisaeta longa, type sp., Rhodothermaceae

AB545808, Rubricoccus marinus, type sp., Rhodothermaceae

X80994, Rhodothermus marinus, type sp., Rhodothermaceae

FJ624399, Rhodothermus profundi, Rhodothermaceae

Chlorobi (12)

Chlorobia or Chlorobea (11)

Y08108, Chlorobium clathratiforme, Chlorobiaceae

CP000492, Chlorobium phaeobacteroides , Chlorobiaceae

CP001097, Chlorobium limicola, type sp., Chlorobiaceae

Y08105, Chlorobium phaeovibrioides, Chlorobiaceae

CP000096, Chlorobium luteolum, Chlorobiaceae

M58468, Chlorobaculum tepidum, type sp., Chlorobiaceae

Y08102, Chlorobaculum thiosulfatiphilum, Chlorobiaceae

Y10649, Chlorobium chlorovibrioides, Chlorobiaceae

CP001108, Prosthecochloris aestuarii, type sp., Chlorobiaceae

M62791, Prosthecochloris vibrioformis, Chlorobiaceae

AF170103, Chloroherpeton thalassium, type sp., Chlorobiaceae

AB478415, Ignavibacterium album, type sp., Ignavibacteriaceae

Verrucomicrobia (34)

Rubritaleaceae (6)

AB297805, Rubritalea spongiae, Rubritaleaceae

AB297806, Rubritalea tangerina, Rubritaleaceae

DQ302104, Rubritalea marina, type sp., Rubritaleaceae

AB543683, Rubritalea halochordaticola, Rubritaleaceae

AB277853, Rubritalea squalenifaciens, Rubritaleaceae

AB353310, Rubritalea sabuli, Rubritaleaceae

AB331886, Persicirhabdus sediminis, type sp., Verrucomicrobiaceae

AB331888, Roseibacillus ishigakijimensis, type sp., Verrucomicrobiaceae

AB331889, Roseibacillus ponti, Verrucomicrobiaceae

AB331890, Roseibacillus persicicus, Verrucomicrobiaceae

AB372852, Haloferula harenae, Verrucomicrobiaceae

AB372853, Haloferula rosea, type sp., Verrucomicrobiaceae

AB372854, Haloferula phyci, Verrucomicrobiaceae

AB372855, Haloferula helveola, Verrucomicrobiaceae

AB372856, Haloferula sargassicola, Verrucomicrobiaceae

FJ032193, Haloferula luteola, Verrucomicrobiaceae

AB331893, Luteolibacter algae, Verrucomicrobiaceae

AB331895, Luteolibacter pohnpeiensis, type sp., Verrucomicrobiaceae

AY271254, Akkermansia muciniphila, type sp., Akkermansiaceae

Verrucomicrobiaceae (6)

U60014, Prosthecobacter debontii, Verrucomicrobiaceae

U60015, Prosthecobacter fusiformis, type sp., Verrucomicrobiaceae

U60012, Prosthecobacter dejongeii, Verrucomicrobiaceae

AB305640, Prosthecobacter fluviatilis, Verrucomicrobiaceae

U60013, Prosthecobacter vanneervenii, Verrucomicrobiaceae

X90515, Verrucomicrobium spinosum, type sp., Verrucomicrobiaceae

Puniceicoccaceae and Opitutaceae (9)

AB286016, Pelagicoccus albus, Puniceicoccaceae

AB286017, Pelagicoccus litoralis, Puniceicoccaceae

AB286015, Pelagicoccus mobilis, type sp., Puniceicoccaceae

AB297922, Pelagicoccus croceus, Puniceicoccaceae

Opitutaceae (2)

AF075271, Alterococcus agarolyticus, type sp., Opitutaceae

AJ229235, Opitutus terrae, type sp., Opitutaceae

AB292183, Cerasicoccus arenae, type sp., Puniceicoccaceae

DQ539046, Puniceicoccus vermicola, type sp., Puniceicoccaceae

AB266750, Coraliomargarita akajimensis, type sp., Puniceicoccaceae

Lentisphaerae (2)

AY390428, Lentisphaera araneosa, type sp., Lentisphaeraceae

AY049713, Victivallis vadensis, type sp., Victivallaceae

Chlamydiae (13)

Chlamydiaceae (9)

D85709, Chlamydophila abortus, Chlamydiaceae

D85709, Chlamydophila abortus, Chlamydiaceae

D85708, Chlamydophila caviae, Chlamydiaceae

U68447, Chlamydophila psittaci, type sp., Chlamydiaceae

D85701, Chlamydophila felis, Chlamydiaceae

D89067, Chlamydia trachomatis, type sp., Chlamydiaceae

U73110, Chlamydia suis, Chlamydiaceae

D85718, Chlamydia muridarum, Chlamydiaceae

D88317, Chlamydophila pecorum, Chlamydiaceae

Z49873, Chlamydophila pneumoniae, Chlamydiaceae

Parachlamydiaceae (2)

AF177275, Neochlamydia hartmannellae, type sp., Parachlamydiaceae

Y07556, Parachlamydia acanthamoebae, type sp., Parachlamydiaceae

U68460, Simkania negevensis, type sp., Simkaniaceae

AF042496, Waddlia chondrophila, type sp., Waddliaceae

Planctomycetes (15)

AM850678, Singulisphaera acidiphila, type sp., Planctomycetaceae

FN391026, Singulisphaera rosea, Planctomycetaceae

DQ986200, Aquisphaera giovannonii, type sp., Planctomycetaceae

CP002353, Isosphaera pallida, type sp., Planctomycetaceae

AM162406, Zavarzinella formosa, type sp., Planctomycetaceae

JN880417, Telmatocola sphagniphila, type sp., Planctomycetaceae

X56305, Gemmata obscuriglobus, type sp., Planctomycetaceae

X62912, Blastopirellula marina, type sp., Planctomycetaceae

CP001848, Pirellula staleyi, Planctomycetaceae

BX294149, Rhodopirellula baltica, type sp., Planctomycetaceae

CP002546, Planctomyces brasiliensis, Planctomycetaceae

AJ231184, Planctomyces maris, Planctomycetaceae

X62911, Planctomyces limnophilus, Planctomycetaceae

AM162407, Schlesneria paludicola, type sp., Planctomycetaceae

AB447464, Phycisphaera mikurensis, type sp., Phycisphaeraceae

Fibrobacteres (3)

GU269553, Fibrobacter succinogenes subsp. elongatus, Fibrobacteraceae

AJ496032, Fibrobacter succinogenes subsp. succinogenes, type sp., Fibrobacteraceae

AJ496284, Fibrobacter intestinalis, Fibrobacteraceae

AB072735, Gemmatimonas aurantiaca, type sp., Gemmatimonadaceae

AJ430587, Caldithrix abyssi, type sp., Unclassified Deferribacterales

FJ999729, Caldithrix palaeochoryensis, Unclassified Deferribacterales

Deinococcus−Thermus (74)

Deinococcales (48)

Deinococcaceae (47)

AB087288, Deinococcus aerius, Deinococcaceae

AB087287, Deinococcus aetherius, Deinococcaceae

AY743264, Deinococcus apachensis, Deinococcaceae

CP000359, Deinococcus geothermalis , Deinococcaceae

Y13041, Deinococcus murrayi, Deinococcaceae

AY743262, Deinococcus hopiensis, Deinococcaceae

AJ585981, Deinococcus frigens, Deinococcaceae

AJ585984, Deinococcus saxicola, Deinococcaceae

AJ585986, Deinococcus marmoris, Deinococcaceae

Y11334, Deinococcus radiopugnans, Deinococcaceae

EU622978, Deinococcus aerolatus, Deinococcaceae

EU622979, Deinococcus aerophilus, Deinococcaceae

DQ344634, Deinococcus yunweiensis, Deinococcaceae

DQ017708, Deinococcus aquaticus, Deinococcaceae

AB264134, Deinococcus depolymerans, Deinococcaceae

DQ017709, Deinococcus caeni, Deinococcaceae

Y11332, Deinococcus radiodurans, type sp., Deinococcaceae

EU025028, Deinococcus wulumuqiensis, Deinococcaceae

AJ549111, Deinococcus indicus, Deinococcaceae

Y11329, Deinococcus grandis, Deinococcaceae

JF806527, Deinococcus daejeonensis, Deinococcaceae

AY743256, Deinococcus hohokamensis, Deinococcaceae

AY743259, Deinococcus navajonensis, Deinococcaceae

AY876378, Deinococcus deserti, Deinococcaceae

AM940971, Deinococcus aquatilis, Deinococcaceae

AY941086, Deinococcus ficus, Deinococcaceae

EU427464, Deinococcus gobiensis, Deinococcaceae

HM214546, Deinococcus reticulitermitis, Deinococcaceae

EU626561, Deinococcus xinjiangensis, Deinococcaceae

DQ683348, Deinococcus piscis, Deinococcaceae

Y11331, Deinococcus proteolyticus, Deinococcaceae

Y11333, Deinococcus radiophilus, Deinococcaceae

EF635408, Deinococcus alpinitundrae, Deinococcaceae

AB265180, Deinococcus aquiradiocola, Deinococcaceae

EF635406, Deinococcus claudionis, Deinococcaceae

EF635407, Deinococcus altitudinis, Deinococcaceae

EF635404, Deinococcus radiomollis, Deinococcaceae

AY743283, Deinococcus sonorensis, Deinococcaceae

AY743274, Deinococcus maricopensis, Deinococcaceae

DQ883809, Deinococcus cellulosilyticus, Deinococcaceae

AB264136, Deinococcus roseus, Deinococcaceae

AB264135, Deinococcus misasensis, Deinococcaceae

AY743280, Deinococcus papagonensis, Deinococcaceae

AY743279, Deinococcus yavapaiensis, Deinococcaceae

EF141348, Deinococcus peraridilitoris, Deinococcaceae

AY743277, Deinococcus pimensis, Deinococcaceae

AM988777, Deinobacterium chartae, type sp., Deinococcaceae

DQ022076, Truepera radiovictrix, type sp., Trueperaceae

Thermaceae (26)

EU247889, Thermus arciformis, Thermaceae

EU753247, Thermus islandicus, Thermaceae

L09663, Thermus aquaticus, type sp., Thermaceae

Z15062, Thermus brockianus, Thermaceae

Y18406, Thermus igniterrae, Thermaceae

Y18411, Thermus antranikianii, Thermaceae

AF032127, Thermus scotoductus, Thermaceae

EU701067, Thermus composti, Thermaceae

X07998, Thermus thermophilus, Thermaceae

FR749951, Thermus filiformis, Thermaceae

Y18416, Thermus oshimai, Thermaceae

EU247891, Meiothermus cateniformans, Thermaceae

AF418001, Meiothermus taiwanensis, Thermaceae

Z15059, Meiothermus ruber, type sp., Thermaceae

Y13594, Meiothermus cerbereus, Thermaceae

FN178496, Meiothermus rufus, Thermaceae

GU584097, Meiothermus granaticius, Thermaceae

AB586707, Meiothermus hypogaeus, Thermaceae

X84212, Meiothermus chliarophilus, Thermaceae

AJ871168, Meiothermus timidus, Thermaceae

CP002042, Meiothermus silvanus, Thermaceae

AB079382, Marinithermus hydrothermalis, type sp., Thermaceae

AB107956, Oceanithermus desulfurans, Thermaceae

AJ430586, Oceanithermus profundus, type sp., Thermaceae

HM856631, Rhabdothermus arcticus, type sp., Thermaceae

AJ507298, Vulcanithermus mediatlanticus, type sp., Thermaceae

Nitrospira (8)

X96726, Thermodesulfovibrio islandicus, Nitrospiraceae

AB231858, Thermodesulfovibrio yellowstonii, type sp., Nitrospiraceae

AB231857, Thermodesulfovibrio thiophilus, Nitrospiraceae

AB021302, Thermodesulfovibrio aggregans, Nitrospiraceae

EF081294, Thermodesulfovibrio hydrogeniphilus, Nitrospiraceae

AF356829, Leptospirillum ferriphilum, Nitrospiraceae

X86776, Leptospirillum ferrooxidans, type sp., Nitrospiraceae

X82558, Nitrospira moscoviensis, Nitrospiraceae

Actinobacteria (2449)

Micrococcaceae and Bifidobacteriaceae (157)

Bifidobacteriaceae (53)

M58733, Bifidobacterium coryneforme, Bifidobacteriaceae

D86188, Bifidobacterium indicum, Bifidobacteriaceae

FJ858731, Bifidobacterium actinocoloniiforme, Bifidobacteriaceae

EF187235, Bifidobacterium asteroides, Bifidobacteriaceae

EU127549, Bifidobacterium bombi, Bifidobacteriaceae

GU361834, Bifidobacterium thermophilum, Bifidobacteriaceae

AY148470, Bifidobacterium thermacidophilum subsp. porcinum, Bifidobacteriaceae

AB016246, Bifidobacterium thermacidophilum subsp. thermacidophilum, Bifidobacteriaceae

D86190, Bifidobacterium boum, Bifidobacteriaceae

AB613259, Bifidobacterium reuteri, Bifidobacteriaceae

D89332, Scardovia inopinata, type sp., Bifidobacteriaceae

AY278626, Scardovia wiggsiae, Bifidobacteriaceae

D89331, Parascardovia denticolens, type sp., Bifidobacteriaceae

AM419460, Alloscardovia omnicolens, type sp., Bifidobacteriaceae

AB241105, Metascardovia criceti, type sp., Bifidobacteriaceae

AY174107, Aeriscardovia aeriphila, type sp., Bifidobacteriaceae

AB241106, Bifidobacterium tsurumiense, Bifidobacteriaceae

AP009256, Bifidobacterium adolescentis , Bifidobacteriaceae

FJ611793, Bifidobacterium stercoris, Bifidobacteriaceae

D86197, Bifidobacterium ruminantium, Bifidobacteriaceae

D86182, Bifidobacterium angulatum, Bifidobacteriaceae

D86192, Bifidobacterium merycicum, Bifidobacteriaceae

AB559503, Bifidobacterium callitrichos, Bifidobacteriaceae

AF432082, Bifidobacterium catenulatum, Bifidobacteriaceae

D86187, Bifidobacterium pseudocatenulatum, Bifidobacteriaceae

D86183, Bifidobacterium dentium, Bifidobacteriaceae

AB425276, Bifidobacterium kashiwanohense, Bifidobacteriaceae

AB559505, Bifidobacterium stellenboschense, Bifidobacteriaceae

AB559506, Bifidobacterium biavatii, Bifidobacteriaceae

AJ307005, Bifidobacterium scardovii, Bifidobacteriaceae

U25952, Bifidobacterium bifidum, type sp., Bifidobacteriaceae

AB050136, Bifidobacterium animalis subsp. lactis, Bifidobacteriaceae

D86185, Bifidobacterium animalis subsp. animalis, Bifidobacteriaceae

D86186, Bifidobacterium choerinum, Bifidobacteriaceae

D86194, Bifidobacterium pseudolongum subsp. globosum, Bifidobacteriaceae

D86195, Bifidobacterium pseudolongum subsp. pseudolongum, Bifidobacteriaceae

D86193, Bifidobacterium magnum, Bifidobacteriaceae

GU361818, Bifidobacterium cuniculi, Bifidobacteriaceae

D86189, Bifidobacterium gallicum, Bifidobacteriaceae

M58739, Bifidobacterium longum subsp. longum, Bifidobacteriaceae

M58743, Bifidobacterium longum subsp. suis, Bifidobacteriaceae

D86184, Bifidobacterium longum subsp. infantis, Bifidobacteriaceae

AB559504, Bifidobacterium saguini, Bifidobacteriaceae

AB006658, Bifidobacterium breve, Bifidobacteriaceae

D86191, Bifidobacterium gallinarum, Bifidobacteriaceae

D89328, Bifidobacterium saeculare, Bifidobacteriaceae

D86196, Bifidobacterium pullorum, Bifidobacteriaceae

M58744, Gardnerella vaginalis, type sp., Bifidobacteriaceae

D89378, Bifidobacterium subtile, Bifidobacteriaceae

M58741, Bifidobacterium minimum, Bifidobacteriaceae

FJ858736, Bifidobacterium bohemicum, Bifidobacteriaceae

AB433856, Bifidobacterium mongoliense, Bifidobacteriaceae

AY174108, Bifidobacterium psychraerophilum, Bifidobacteriaceae

EU086805, Arthrobacter sanguinis, Micrococcaceae

AJ812213, Acaricomes phytoseiuli, type sp., Micrococcaceae

AF180950, Renibacterium salmoninarum, type sp., Micrococcaceae

AB071950, Arthrobacter russicus, Micrococcaceae

GQ406811, Arthrobacter livingstonensis, Micrococcaceae

GU784867, Arthrobacter cryoconiti, Micrococcaceae

AJ640198, Arthrobacter stackebrandtii, Micrococcaceae

GQ227413, Arthrobacter alpinus, Micrococcaceae

AB588633, Arthrobacter psychrochitiniphilus, Micrococcaceae

AF134179, Arthrobacter psychrolactophilus, Micrococcaceae

AM176541, Arthrobacter phenanthrenivorans, Micrococcaceae

X80741, Arthrobacter polychromogenes, Micrococcaceae

X83408, Arthrobacter oxydans, Micrococcaceae

AF330692, Arthrobacter scleromae, Micrococcaceae

AJ278870, Arthrobacter roseus, Micrococcaceae

AM409361, Arthrobacter defluvii, Micrococcaceae

AB248526, Arthrobacter niigatensis, Micrococcaceae

FN673551, Arthrobacter equi, Micrococcaceae

AF102267, Arthrobacter chlorophenolicus, Micrococcaceae

AF235091, Arthrobacter sulfonivorans, Micrococcaceae

AM039435, Arthrobacter ramosus, Micrococcaceae

X80744, Arthrobacter ureafaciens, Micrococcaceae

X80743, Arthrobacter nicotinovorans, Micrococcaceae

X83406, Arthrobacter histidinolovorans, Micrococcaceae

JQ955626, Corynebacterium ilicis, Corynebacteriaceae

X83407, Arthrobacter ilicis, Micrococcaceae

X83405, Arthrobacter aurescens, Micrococcaceae

AJ512504, Arthrobacter nitroguajacolicus, Micrococcaceae

AJ639826, Arthrobacter castelli, Micrococcaceae

AJ639827, Arthrobacter pigmenti, Micrococcaceae

AJ315070, Arthrobacter monumenti, Micrococcaceae

X80737, Arthrobacter citreus, Micrococcaceae

AJ316140, Arthrobacter gandavensis, Micrococcaceae

AY116496, Arthrobacter koreensis, Micrococcaceae

AJ243422, Arthrobacter luteolus, Micrococcaceae

AJ243422, Arthrobacter luteolus, Micrococcaceae

AB248527, Arthrobacter alkaliphilus, Micrococcaceae

AF235090, Arthrobacter methylotrophus, Micrococcaceae

AB279890, Arthrobacter humicola, Micrococcaceae

AB279889, Arthrobacter oryzae, Micrococcaceae

AJ639830, Arthrobacter parietis, Micrococcaceae

AJ315069, Arthrobacter tumbae, Micrococcaceae

DQ097525, Arthrobacter subterraneus, Micrococcaceae

AJ639829, Arthrobacter tecti, Micrococcaceae

AB537168, Arthrobacter flavus, Micrococcaceae

X80748, Arthrobacter agilis, Micrococcaceae

X80740, Arthrobacter pascens, Micrococcaceae

X80736, Arthrobacter globiformis, type sp., Micrococcaceae

X93353, Arthrobacter woluwensis, Micrococcaceae

AJ616763, Arthrobacter psychrophenolicus, Micrococcaceae

X83409, Arthrobacter sulfureus, Micrococcaceae

AJ606062, Arthrobacter kerguelensis, Micrococcaceae

AM931709, Arthrobacter antarcticus, Micrococcaceae

AJ606061, Arthrobacter gangotriensis, Micrococcaceae

Y15885, Arthrobacter rhombi, Micrococcaceae

DQ372937, Zhihengliuella halotolerans, type sp., Micrococcaceae

EU847536, Zhihengliuella alba, Micrococcaceae

GQ406812, Arthrobacter cryotolerans, Micrococcaceae

AJ617482, Arthrobacter mysorens, Micrococcaceae

X83410, Arthrobacter uratoxydans, Micrococcaceae

X80739, Arthrobacter nicotianae, Micrococcaceae

AJ609628, Arthrobacter arilaitensis, Micrococcaceae

AJ551163, Arthrobacter ardleyensis, Micrococcaceae

AJ609630, Arthrobacter bergerei, Micrococcaceae

X80745, Arthrobacter protophormiae, Micrococcaceae

EF660748, Arthrobacter soli, Micrococcaceae

D88211, Arthrobacter creatinolyticus, Micrococcaceae

AY376164, Citricoccus alkalitolerans, Micrococcaceae

AJ344143, Citricoccus muralis, type sp., Micrococcaceae

FM992367, Citricoccus parietis, Micrococcaceae

EU305672, Citricoccus zhacaiensis , Micrococcaceae

GU797177, Citricoccus nitrophenolicus, Micrococcaceae

DQ491453, Micrococcus flavus, Micrococcaceae

AJ536198, Micrococcus luteus, type sp., Micrococcaceae

FJ214355, Micrococcus yunnanensis, Micrococcaceae

AJ005932, Micrococcus antarcticus, Micrococcaceae

EU005372, Micrococcus endophyticus, Micrococcaceae

X80750, Micrococcus lylae, Micrococcaceae

FJ423763, Micrococcus terreus, Micrococcaceae

FN673681, Micrococcus lactis, Micrococcaceae

EU939716, Zhihengliuella aestuarii, Micrococcaceae

AB248533, Sinomonas albida, Micrococcaceae

X80746, Sinomonas atrocyanea, Micrococcaceae

HQ605707, Sinomonas soli, Micrococcaceae

EU370704, Sinomonas flava, type sp., Micrococcaceae

AB248531, Sinomonas echigonensis, Micrococcaceae

AY684123, Yaniella flava, Micrococcaceae

AY228479, Yaniella halotolerans, type sp., Micrococcaceae

FJ871122, Yaniella fodinae, Micrococcaceae

FN554542, Auritidibacter ignavus, type sp., Micrococcaceae

AJ243421, Arthrobacter albus, Micrococcaceae

X93354, Arthrobacter cumminsii, Micrococcaceae

AY226510, Nesterenkonia xinjiangensis, Micrococcaceae

EU566871, Nesterenkonia alba, Micrococcaceae

AY574575, Nesterenkonia aethiopica, Micrococcaceae

EF680886, Nesterenkonia flava, Micrococcaceae

AJ290397, Nesterenkonia lacusekhoensis, Micrococcaceae

X80747, Nesterenkonia halobia, type sp., Micrococcaceae

AY820953, Nesterenkonia halophila, Micrococcaceae

AY226508, Nesterenkonia halotolerans, Micrococcaceae

AY588277, Nesterenkonia sandarakina, Micrococcaceae

AY928901, Nesterenkonia jeotgali, Micrococcaceae

AY588278, Nesterenkonia lutea, Micrococcaceae

AJ292364, Arthrobacter nasiphocae, Micrococcaceae

X80738, Arthrobacter crystallopoietes, Micrococcaceae

Brevibacteriaceae (24)

AJ620364, Brevibacterium picturae, Brevibacteriaceae

FN293377, Brevibacterium sandarakinum, Brevibacteriaceae

AM421807, Brevibacterium marinum, Brevibacteriaceae

AY243344, Brevibacterium antiquum, Brevibacteriaceae

X76566, Brevibacterium aurantiacum, Brevibacteriaceae

AY228463, Brevibacterium celere, Brevibacteriaceae

AJ564859, Brevibacterium sanguinis, Brevibacteriaceae

AJ251418, Brevibacterium casei, Brevibacteriaceae

Y17962, Brevibacterium avium, Brevibacteriaceae

AM158906, Brevibacterium oceani, Brevibacteriaceae

X76565, Brevibacterium epidermidis, Brevibacteriaceae

X83813, Brevibacterium iodinum, Brevibacteriaceae

X77451, Brevibacterium linens, type sp., Brevibacteriaceae

AY243343, Brevibacterium permense, Brevibacteriaceae

AJ488509, Brevibacterium luteolum, Brevibacteriaceae

AF133534, Brevibacterium otitidis, Brevibacteriaceae

X93594, Brevibacterium mcbrellneri, Brevibacteriaceae

AJ251463, Brevibacterium paucivorans, Brevibacteriaceae

EU086793, Brevibacterium ravenspurgense, Brevibacteriaceae

EU868814, Brevibacterium massiliense, Brevibacteriaceae

DQ344485, Brevibacterium samyangense, Brevibacteriaceae

EU484189, Brevibacterium pityocampae, Brevibacteriaceae

EF158852, Brevibacterium album, Brevibacteriaceae

GU117109, Brevibacterium salitolerans, Brevibacteriaceae

AJ622907, Kocuria carniphila, Micrococcaceae

EU286964, Kocuria gwangalliensis, Micrococcaceae

AY211385, Kocuria marina, Micrococcaceae

GQ352404, Kocuria salsicia, Micrococcaceae

X87754, Kocuria varians, Micrococcaceae

Y16264, Kocuria rhizophila, Micrococcaceae

FJ607311, Kocuria atrinae, Micrococcaceae

Y16263, Kocuria palustris, Micrococcaceae

AB071952, Rothia aeria, Micrococcaceae

M59055, Rothia dentocariosa, type sp., Micrococcaceae

X87758, Rothia mucilaginosa, Micrococcaceae

AJ131121, Rothia nasimurium, Micrococcaceae

DQ822568, Rothia terrae, Micrococcaceae

AY043359, Rothia amarae, Micrococcaceae

DQ979377, Kocuria halotolerans, Micrococcaceae

FJ607312, Kocuria koreensis, Micrococcaceae

X80749, Kocuria kristinae, Micrococcaceae

EF602041, Kocuria flava, Micrococcaceae

EF602041, Kocuria flava, Micrococcaceae

AJ278868, Kocuria polaris, Micrococcaceae

X87756, Kocuria rosea, type sp., Micrococcaceae

AY987383, Kocuria himachalensis, Micrococcaceae

DQ059617, Kocuria aegyptia, Micrococcaceae

DQ531634, Kocuria turfanensis, Micrococcaceae

Dermabacteraceae (17)

AB537169, Brachybacterium conglomeratum, Dermabacteraceae

AJ415377, Brachybacterium paraconglomeratum, Dermabacteraceae

X83810, Brachybacterium faecium, type sp., Dermabacteraceae

EU937750, Brachybacterium saurashtrense, Dermabacteraceae

AJ415384, Brachybacterium sacelli, Dermabacteraceae

X91031, Brachybacterium alimentarium, Dermabacteraceae

X91657, Brachybacterium tyrofermentans, Dermabacteraceae

AJ415378, Brachybacterium fresconis, Dermabacteraceae

X91034, Dermabacter hominis, type sp., Dermabacteraceae

EU477050, Helcobacillus massiliensis, type sp., Dermabacteraceae

EU009865, Devriesea agamarum, type sp., Dermabacteraceae

DQ822566, Brachybacterium phenoliresistens, Dermabacteraceae

EF125186, Brachybacterium zhongshanense, Dermabacteraceae

GQ339911, Brachybacterium squillarum, Dermabacteraceae

AJ537574, Brachybacterium muris, Dermabacteraceae

AJ415376, Brachybacterium rhamnosum, Dermabacteraceae

X91033, Brachybacterium nesterenkovii, Dermabacteraceae

Demequinaceae (7)

AB471559, Demequina salsinemoris, Demequinaceae

AB522643, Demequina globuliformis, Demequinaceae

AB522641, Demequina aurantiaca, Demequinaceae

AB522640, Demequina oxidasica, Demequinaceae

EF451745, Demequina lutea, Demequinaceae

DQ010160, Demequina aestuarii, type sp., Demequinaceae

AB639012, Lysinimicrobium mangrovi, type sp., Demequinaceae

Actinomycetaceae (59)

X80414, Actinomyces gerencseriae, Actinomycetaceae

X82450, Actinomyces israelii, Actinomycetaceae

EF558367, Actinomyces massiliensis, Actinomycetaceae

AJ697609, Actinomyces dentalis, Actinomycetaceae

DQ072005, Actinomyces ruminicola, Actinomycetaceae

AJ507295, Actinomyces oricola, Actinomycetaceae

X80411, Actinomyces howellii, Actinomycetaceae

AB545935, Actinomyces oris, Actinomycetaceae

X82453, Actinomyces viscosus, Actinomycetaceae

X81062, Actinomyces naeslundii, Actinomycetaceae

AB545933, Actinomyces johnsonii, Actinomycetaceae

AJ234039, Actinomyces bowdenii, Actinomycetaceae

AJ234066, Actinomyces slackii, Actinomycetaceae

X80412, Actinomyces denticolens, Actinomycetaceae

EU484334, Actinomyces timonensis, Actinomycetaceae

X81061, Actinomyces bovis, type sp., Actinomycetaceae

FN552454, Actinomyces weissii, Actinomycetaceae

AJ243791, Actinomyces urogenitalis, Actinomycetaceae

AJ276805, Actinomyces catuli, Actinomycetaceae

AJ251986, Actinomyces radicidentis, Actinomycetaceae

AJ540309, Actinomyces graevenitzii, Actinomycetaceae

Y08828, Actinomyces europaeus, Actinomycetaceae

FJ617539, Actinomyces hominis, Actinomycetaceae

AJ249326, Actinomyces coleocanis, Actinomycetaceae

AM084228, Actinomyces neuii subsp. neuii, Actinomycetaceae

AM084229, Actinomyces neuii subsp. anitratus, Actinomycetaceae

AJ428402, Varibaculum cambriense, type sp., Actinomycetaceae

AJ427624, Mobiluncus curtisii subsp. holmesii, Actinomycetaceae

AJ318408, Mobiluncus curtisii subsp. curtisii, type sp., Actinomycetaceae

AJ318410, Mobiluncus mulieris, Actinomycetaceae

FJ234421, Actinomyces naturae, Actinomycetaceae

X78719, Actinomyces radingae, Actinomycetaceae

X69616, Actinomyces hyovaginalis, Actinomycetaceae

AJ277385, Actinomyces suimastitidis, Actinomycetaceae

AJ404889, Actinomyces funkei, Actinomycetaceae

X80413, Actinomyces georgiae, Actinomycetaceae

X82451, Actinomyces meyeri, Actinomycetaceae

AJ234040, Actinomyces odontolyticus, Actinomycetaceae

AJ421779, Actinomyces cardiffensis, Actinomycetaceae

AJ427451, Actinomyces vaccimaxillae, Actinomycetaceae

X78720, Actinomyces turicensis, Actinomycetaceae

AJ243891, Actinomyces canis, Actinomycetaceae

AF433168, Actinomyces hongkongensis, Actinomycetaceae

AJ276405, Actinomyces marimammalium, Actinomycetaceae

X82448, Actinomyces hordeovulneris, Actinomycetaceae

AJ508455, Actinomyces nasicola, Actinomycetaceae

AB305159, Trueperella abortisuis, Actinomycetaceae

X79224, Trueperella bernardiae, Actinomycetaceae

X79225, Trueperella pyogenes, type sp., Actinomycetaceae

AJ879696, Trueperella bialowiezense, Actinomycetaceae

AJ879697, Trueperella bonasi, Actinomycetaceae

AF487679, Actinobaculum massiliense, Actinomycetaceae

S83623, Actinobaculum suis, type sp., Actinomycetaceae

Y12329, Actinobaculum schaalii, Actinomycetaceae

AJ439453, Actinobaculum urinale, Actinomycetaceae

FR749960, Arcanobacterium phocae, Actinomycetaceae

AJ250959, Arcanobacterium pluranimalium, Actinomycetaceae

AJ234059, Arcanobacterium haemolyticum, type sp., Actinomycetaceae

AJ300767, Arcanobacterium hippocoleae, Actinomycetaceae

FJ969847, Haloactinobacterium album, type sp., Ruaniaceae

DQ343153, Ruania albidiflava, type sp., Ruaniaceae

Beutenbergiaceae (4)

Y18378, Beutenbergia cavernae, type sp., Beutenbergiaceae

AB522642, Miniimonas arenae, type sp., Beutenbergiaceae

AB455532, Serinibacter salmoneus, type sp., Beutenbergiaceae

AJ400627, Salana multivorans, type sp., Beutenbergiaceae

Bogoriellaceae (7)

FN356976, Georgenia soli, Bogoriellaceae

HQ246163, Georgenia daeguensis, Bogoriellaceae

X94155, Georgenia muralis, type sp., Bogoriellaceae

DQ203185, Georgenia ruanii, Bogoriellaceae

AB436534, Georgenia thermotolerans, Bogoriellaceae

FJ717681, Georgenia halophila, Bogoriellaceae

Y09911, Bogoriella caseilytica, type sp., Bogoriellaceae

Jonesiaceae (2)

Jonesiaceae (2)

X78420, Jonesia denitrificans, type sp., Jonesiaceae

AJ626896, Jonesia quinghaiensis, Jonesiaceae

Rarobacteraceae (2)

Y17870, Rarobacter faecitabidus, type sp., Rarobacteraceae

AB056129, Rarobacter incanus, Rarobacteraceae

X79451, Sanguibacter inulinus, Sanguibacteraceae

X79452, Sanguibacter suarezii, Sanguibacteraceae

X79450, Sanguibacter keddieii, type sp., Sanguibacteraceae

EF211071, Sanguibacter antarcticus, Sanguibacteraceae

AJ783958, Sanguibacter marinus, Sanguibacteraceae

EF547937, Sanguibacter soli, Sanguibacteraceae

FM995611, Koreibacter algae, type sp., Unclassified Suborder Micrococcineae

AB445007, Paraoerskovia marina, type sp., Cellulomonadaceae

AJ314851, Oerskovia paurometabola, Cellulomonadaceae

X79454, Oerskovia turbata, type sp., Cellulomonadaceae

AJ314848, Oerskovia jenensis, Cellulomonadaceae

X83807, Oerskovia enterophila, Cellulomonadaceae

Promicromonosporaceae (25)

EU910872, Myceligenerans halotolerans, Promicromonosporaceae

AY354285, Myceligenerans xiligouense, type sp., Promicromonosporaceae

FR733716, Myceligenerans crystallogenes, Promicromonosporaceae

AY789835, Isoptericola halotolerans, Promicromonosporaceae

FJ469988, Isoptericola chiayiensis, Promicromonosporaceae

DQ387860, Isoptericola dokdonensis, Promicromonosporaceae

EU852101, Isoptericola jiangsuensis, Promicromonosporaceae

AF105422, Xylanimicrobium pachnodae, type sp., Promicromonosporaceae

AY273185, Xylanibacterium ulmi, type sp., Promicromonosporaceae

AF403541, Xylanimonas cellulosilytica, type sp., Promicromonosporaceae

AJ854061, Isoptericola hypogeus, Promicromonosporaceae

HQ222356, Isoptericola nanjingensis, Promicromonosporaceae

AJ298873, Isoptericola variabilis, type sp., Promicromonosporaceae

FJ214352, Promicromonospora xylanilytica, Promicromonosporaceae

GU434253, Promicromonospora endophytica, Promicromonosporaceae

AJ487303, Promicromonospora aerolata, Promicromonosporaceae

AJ487302, Promicromonospora vindobonensis, Promicromonosporaceae

AM709608, Promicromonospora kroppenstedtii, Promicromonosporaceae

FN293378, Promicromonospora umidemergens , Promicromonosporaceae

AB023375, Promicromonospora sukumoe, Promicromonosporaceae

X83808, Promicromonospora citrea, type sp., Promicromonosporaceae

AM992980, Promicromonospora flava, Promicromonosporaceae

EF076760, Cellulosimicrobium terreum, Promicromonosporaceae

X83809, Cellulosimicrobium cellulans, type sp., Promicromonosporaceae

AY501364, Cellulosimicrobium funkei, Promicromonosporaceae

AB489904, Luteimicrobium subarcticum, Unclassified Suborder Micrococcineae

Cellulomonadaceae (17)

EU560979, Cellulomonas aerilata, Cellulomonadaceae

X83804, Cellulomonas cellasea, Cellulomonadaceae

X83802, Cellulomonas biazotea, Cellulomonadaceae

X83803, Cellulomonas fimi, Cellulomonadaceae

AB268586, Cellulomonas chitinilytica, Cellulomonadaceae

AB166887, Cellulomonas composti, Cellulomonadaceae

X79461, Cellulomonas gelida, Cellulomonadaceae

AF064701, Cellulomonas persica, Cellulomonadaceae

X83801, Cellulomonas uda, Cellulomonadaceae

AF064702, Cellulomonas iranensis, Cellulomonadaceae

X79463, Cellulomonas flavigena, type sp., Cellulomonadaceae

AM902253, Cellulomonas phragmiteti, Cellulomonadaceae

X82449, Cellulomonas humilata, Cellulomonadaceae

AY303668, Cellulomonas xylanilytica, Cellulomonadaceae

AY884570, Cellulomonas terrae, Cellulomonadaceae

AY501362, Cellulomonas denverensis, Cellulomonadaceae

X82598, Cellulomonas hominis, Cellulomonadaceae

Microbacteriaceae (209)

X77441, Microbacterium lacticum, type sp., Microbacteriaceae

Y17237, Microbacterium schleiferi, Microbacteriaceae

AB286029, Microbacterium flavum, Microbacteriaceae

AY962574, Microbacterium koreense, Microbacteriaceae

AB234028, Microbacterium aoyamense, Microbacteriaceae

AB274908, Microbacterium hatanonis, Microbacteriaceae

AM949677, Microbacterium invictum, Microbacteriaceae

AB286030, Microbacterium lacus, Microbacteriaceae

Y17229, Microbacterium aurum, Microbacteriaceae

AB004721, Microbacterium terregens, Microbacteriaceae

AB234025, Microbacterium terricola, Microbacteriaceae

AB248875, Microbacterium pygmaeum, Microbacteriaceae

AB234027, Microbacterium pumilum, Microbacteriaceae

AB234026, Microbacterium deminutum, Microbacteriaceae

AB286028, Microbacterium fluvii, Microbacteriaceae

AB286027, Microbacterium awajiense, Microbacteriaceae

Y17230, Microbacterium dextranolyticum, Microbacteriaceae

Y17234, Microbacterium laevaniformans, Microbacteriaceae

GQ351351, Microbacterium mitrae, Microbacteriaceae

AB004726, Microbacterium aurantiacum, Microbacteriaceae

AB013907, Microbacterium kitamiense, Microbacteriaceae

AB004725, Microbacterium chocolatum, Microbacteriaceae

AB004724, Microbacterium ketosireducens, Microbacteriaceae

AB004720, Microbacterium terrae, Microbacteriaceae

AM181507, Microbacterium thalassium, Microbacteriaceae

EF567306, Microbacterium binotii, Microbacteriaceae

AY376165, Microbacterium halotolerans, Microbacteriaceae

FN547412, Microbacterium yannicii, Microbacteriaceae

FN870023, Microbacterium arthrosphaerae, Microbacteriaceae

AM181504, Microbacterium hominis, Microbacteriaceae

GQ246683, Microbacterium suwonense, Microbacteriaceae

EF593038, Microbacterium soli , Microbacteriaceae

AJ853908, Microbacterium xylanilyticum, Microbacteriaceae

AB004714, Microbacterium halophilum, Microbacteriaceae

EU239498, Microbacterium insulae, Microbacteriaceae

Y17240, Microbacterium trichothecenolyticum, Microbacteriaceae

Y17232, Microbacterium flavescens, Microbacteriaceae

X77443, Microbacterium arborescens, Microbacteriaceae

AB271048, Microbacterium ginsengisoli, Microbacteriaceae

X77442, Microbacterium imperiale, Microbacteriaceae

GQ329713, Microbacterium radiodurans, Microbacteriaceae

AY062021, Microbacterium ulmi, Microbacteriaceae

AB286020, Microbacterium marinilacus, Microbacteriaceae

AJ853909, Microbacterium paludicola, Microbacteriaceae

AB286021, Microbacterium sediminicola, Microbacteriaceae

EF466125, Microbacterium kribbense, Microbacteriaceae

AF263563, Microbacterium gubbeenense, Microbacteriaceae

AM158907, Microbacterium indicum, Microbacteriaceae

X77446, Microbacterium barkeri, Microbacteriaceae

AM747814, Microbacterium luticocti, Microbacteriaceae

X77445, Microbacterium testaceum, Microbacteriaceae

AM778449, Microbacterium aquimaris, Microbacteriaceae

FJ865214, Microbacterium pseudoresistens, Microbacteriaceae

Y14699, Microbacterium resistens, Microbacteriaceae

AJ698726, Microbacterium hydrocarbonoxydans, Microbacteriaceae

AJ277840, Microbacterium phyllosphaerae, Microbacteriaceae

AJ249780, Microbacterium foliorum, Microbacteriaceae

AJ853910, Microbacterium maritypicum, Microbacteriaceae

Y17227, Microbacterium oxydans, Microbacteriaceae

X77444, Microbacterium liquefaciens, Microbacteriaceae

AB004718, Microbacterium luteolum, Microbacteriaceae

AB004719, Microbacterium saperdae, Microbacteriaceae

AB004717, Microbacterium keratanolyticum, Microbacteriaceae

EF623999, Microbacterium profundi, Microbacteriaceae

AJ698725, Microbacterium oleivorans, Microbacteriaceae

AY566291, Microbacterium natoriense, Microbacteriaceae

AJ309929, Microbacterium aerolatum, Microbacteriaceae

EU873314, Microbacterium ginsengiterrae, Microbacteriaceae

AJ491806, Microbacterium paraoxydans, Microbacteriaceae

EU912487, Microbacterium azadirachtae, Microbacteriaceae

Y17228, Microbacterium arabinogalactanolyticum, Microbacteriaceae

Y17231, Microbacterium esteraromaticum, Microbacteriaceae

EU873539, Microbacterium lindanitolerans, Microbacteriaceae

FJ807673, Microbacterium agarici, Microbacteriaceae

FJ865215, Microbacterium humi, Microbacteriaceae

AB012648, Mycetocola lacteus, Microbacteriaceae

AB012647, Mycetocola saprophilus, type sp., Microbacteriaceae

AB012646, Mycetocola tolaasinivorans, Microbacteriaceae

DQ062097, Mycetocola reblochoni, Microbacteriaceae

AB177868, Plantibacter auratus, Microbacteriaceae

AJ310417, Plantibacter flavus, type sp., Microbacteriaceae

AB042094, Okibacterium fritillariae, type sp., Microbacteriaceae

X77449, Agromyces mediolanus, Microbacteriaceae

GQ241325, Agromyces soli, Microbacteriaceae

AF389342, Agromyces aurantiacus, Microbacteriaceae

FJ529717, Agromyces flavus, Microbacteriaceae

AB454378, Agromyces tropicus, Microbacteriaceae

AB023359, Agromyces bracchium, Microbacteriaceae

AB023356, Agromyces luteolus, Microbacteriaceae

AY427830, Agromyces ulmi, Microbacteriaceae

AY618215, Agromyces italicus, Microbacteriaceae

AY618217, Agromyces lapidis, Microbacteriaceae

DQ673873, Agromyces allii, Microbacteriaceae

AY507129, Agromyces salentinus, Microbacteriaceae

EF363711, Agromyces terreus, Microbacteriaceae

AY618216, Agromyces humatus, Microbacteriaceae

AY507128, Agromyces neolithicus, Microbacteriaceae

FJ972171, Agromyces bauzanensis, Microbacteriaceae

AY737778, Agromyces subbeticus, Microbacteriaceae

X77447, Agromyces ramosus, type sp., Microbacteriaceae

AF503917, Agromyces albus, Microbacteriaceae

AY277619, Agromyces cerinus subsp. nitratus, Microbacteriaceae

D45061, Agromyces hippuratus, Microbacteriaceae

D45060, Agromyces cerinus subsp. cerinus, Microbacteriaceae

FJ607310, Agromyces atrinae, Microbacteriaceae

AB023357, Agromyces rhizospherae, Microbacteriaceae

D45057, Leifsonia aquatica, type sp., Microbacteriaceae

DQ232612, Leifsonia naganoensis, Microbacteriaceae

DQ232614, Leifsonia shinshuensis, Microbacteriaceae

AB016985, Leifsonia xyli subsp. cynodontis, Microbacteriaceae

EU912483, Leifsonia soli, Microbacteriaceae

AB278552, Leifsonia lichenia, Microbacteriaceae

AF116342, Leifsonia poae, Microbacteriaceae

AB046363, Curtobacterium albidum, Microbacteriaceae

X77436, Curtobacterium citreum, type sp., Microbacteriaceae

AB266597, Curtobacterium ammoniigenes, Microbacteriaceae

AJ312209, Curtobacterium flaccumfaciens, Microbacteriaceae

AJ310413, Curtobacterium herbarum, Microbacteriaceae

GU269547, Flavobacterium oceanosedimentum, Flavobacteriaceae

AJ784400, Curtobacterium pusillum, Microbacteriaceae

X77437, Curtobacterium luteum, Microbacteriaceae

EF587758, Curtobacterium ginsengisoli, Microbacteriaceae

AM494541, Humibacter albus, type sp., Microbacteriaceae

AB362159, Schumannella luteola, type sp., Microbacteriaceae

AJ438585, Leifsonia rubra, Microbacteriaceae

AJ459101, Rhodoglobus vestalii, type sp., Microbacteriaceae

AJ438586, Rhodoglobus aureus, Microbacteriaceae

AF539697, Salinibacterium amurskyense, type sp., Microbacteriaceae

DQ515964, Salinibacterium xinjiangense, Microbacteriaceae

EF466124, Leifsonia bigeumensis, Microbacteriaceae

AF159363, Agreia bicolorata, type sp., Microbacteriaceae

AJ310412, Agreia pratensis, Microbacteriaceae

AF224722, Subtercola boreus, type sp., Microbacteriaceae

AF224723, Subtercola frigoramans, Microbacteriaceae

AJ717385, Microcella alkaliphila, Microbacteriaceae

AJ717388, Microcella putealis, type sp., Microbacteriaceae

DQ256087, Yonghaparkia alkaliphila, type sp., Microbacteriaceae

EF373534, Chryseoglobus frigidaquae, type sp., Microbacteriaceae

EF466129, Leifsonia kribbensis, Microbacteriaceae

DQ473536, Herbiconiux ginsengi, type sp., Microbacteriaceae

FN432340, Herbiconiux solani, Microbacteriaceae

AB583921, Herbiconiux flava, Microbacteriaceae

FJ828659, Herbiconiux moechotypicola, Microbacteriaceae

AM072820, Leucobacter alluvii, Microbacteriaceae

GU390657, Leucobacter chromiiresistens, Microbacteriaceae

EU346911, Leucobacter chironomi, Microbacteriaceae

GQ504012, Leucobacter celer, Microbacteriaceae

AB012594, Leucobacter albus, Microbacteriaceae

D45063, Leucobacter komagatae, type sp., Microbacteriaceae

AJ781047, Leucobacter aridicollis, Microbacteriaceae

AM040493, Leucobacter iarius, Microbacteriaceae

GQ246672, Leucobacter denitrificans, Microbacteriaceae

DQ845457, Leucobacter chromiireducens subsp. solipictus, Microbacteriaceae

AJ781046, Leucobacter chromiireducens subsp. chromiireducens, Microbacteriaceae

AM072819, Leucobacter luti, Microbacteriaceae

FN597581, Leucobacter aerolatus, Microbacteriaceae

GQ352403, Leucobacter salsicius, Microbacteriaceae

AB514037, Leucobacter exalbidus, Microbacteriaceae

AM940158, Leucobacter tardus, Microbacteriaceae

AM940158, Leucobacter tardus, Microbacteriaceae

AM900767, Leifsonia pindariensis, Microbacteriaceae

AB282862, Microterricola viridarii, type sp., Microbacteriaceae

AM286414, Phycicola gilvus, type sp., Microbacteriaceae

AB279547, Agrococcus citreus, Microbacteriaceae

X92492, Agrococcus jenensis, type sp., Microbacteriaceae

DQ156908, Agrococcus lahaulensis, Microbacteriaceae

AB279548, Agrococcus baldri, Microbacteriaceae

GQ504748, Agrococcus carbonis, Microbacteriaceae

AM396260, Agrococcus jejuensis, Microbacteriaceae

AM940157, Agrococcus versicolor, Microbacteriaceae

FJ423764, Agrococcus terreus, Microbacteriaceae

DQ168427, Agrococcus casei, Microbacteriaceae

AB378301, Glaciibacter superstes, type sp., Microbacteriaceae

AM931710, Leifsonia antarctica, Microbacteriaceae

AM889135, Leifsonia kafniensis, Microbacteriaceae

GQ406810, Leifsonia psychrotolerans, Microbacteriaceae

GQ496083, Marisediminicola antarctica, type sp., Microbacteriaceae

FN666417, Frondihabitans cladoniiphilus, Microbacteriaceae

DQ525859, Frondihabitans australicus, type sp., Microbacteriaceae

FM998017, Frondihabitans peucedani, Microbacteriaceae

Y18807, Frigoribacterium faeni, type sp., Microbacteriaceae

EF466126, Frigoribacterium mesophilum, Microbacteriaceae

AM849034, Clavibacter michiganensis subsp. sepedonicus, Microbacteriaceae

U09761, Clavibacter michiganensis subsp. insidiosus, Microbacteriaceae

U30254, Clavibacter michiganensis subsp. tessellarius, Microbacteriaceae

X77435, Clavibacter michiganensis subsp. michiganensis, type sp., Microbacteriaceae

X77434, Clavibacter michiganensis subsp. nebraskensis, Microbacteriaceae

AM410684, Rathayibacter iranicus, Microbacteriaceae

D84127, Rathayibacter toxicus, Microbacteriaceae

AF159364, Rathayibacter caricis, Microbacteriaceae

X77439, Rathayibacter rathayi, type sp., Microbacteriaceae

AM410683, Rathayibacter festucae, Microbacteriaceae

X77438, Rathayibacter tritici, Microbacteriaceae

EF467640, Cryobacterium roopkundense, Microbacteriaceae

AJ544063, Cryobacterium psychrophilum, type sp., Microbacteriaceae

HQ845193, Cryobacterium luteum, Microbacteriaceae

HQ845195, Cryobacterium flavum, Microbacteriaceae

DQ515963, Cryobacterium psychrotolerans, Microbacteriaceae

GQ406814, Cryobacterium arcticum, Microbacteriaceae

FJ527819, Amnibacterium kyonggiense, type sp., Microbacteriaceae

DQ533552, Labedella gwakjiensis, type sp., Microbacteriaceae

EF466127, Cryobacterium mesophilum, Microbacteriaceae

AY372075, Klugiella xanthotipulae, type sp., Microbacteriaceae

AJ306835, Gulosibacter molinativorax, type sp., Microbacteriaceae

HQ268603, Gulosibacter chungangensis, Microbacteriaceae

AF300651, Zimmermannella faecalis, Microbacteriaceae

AB012595, Zimmermannella bifida, Microbacteriaceae

X77440, Pseudoclavibacter helvolus, type sp., Microbacteriaceae

FJ514934, Pseudoclavibacter chungangensis, Microbacteriaceae

AB012590, Zimmermannella alba, Microbacteriaceae

AF251035, Tropheryma whipplei, type sp., Cellulomonadaceae

HQ266601, Pseudoclavibacter caeni, Microbacteriaceae

AB329630, Pseudoclavibacter soli, Microbacteriaceae

X79458, Actinotalea fermentans, type sp., Cellulomonadaceae

HQ702749, Cellulomonas carbonis, Cellulomonadaceae

X92152, Cellulomonas bogoriensis, Cellulomonadaceae

AJ277650, Ornithinimicrobium humiphilum, type sp., Intrasporangiaceae

DQ512860, Ornithinimicrobium pekingense, Intrasporangiaceae

AY636111, Ornithinimicrobium kibberense, Intrasporangiaceae

HM068886, Serinicoccus chungangensis, Intrasporangiaceae

EU603762, Serinicoccus profundi, Intrasporangiaceae

AY382898, Serinicoccus marinus, type sp., Intrasporangiaceae

AB520822, Branchiibius hedensis, type sp., Dermacoccaceae

Y14152, Demetria terragena, type sp., Dermacoccaceae

Dermacoccaceae (6)

AY894328, Dermacoccus barathri, Dermacoccaceae

AY894329, Dermacoccus profundi, Dermacoccaceae

AY894323, Dermacoccus abyssi, Dermacoccaceae

X87757, Dermacoccus nishinomiyaensis, type sp., Dermacoccaceae

AB468971, Luteipulveratus mongoliensis , type sp., Dermacoccaceae

AB539735, Flexivirga alba, type sp., Dermacoccaceae

EF187228, Calidifontibacter indicus, type.sp, Dermacoccaceae

FJ528304, Yimella lutea , type sp., Dermacoccaceae

Dermatophilaceae (7)

AJ558133, Arsenicicoccus bolidensis, type sp., Intrasporangiaceae

AB521998, Arsenicicoccus piscis, Intrasporangiaceae

AJ243919, Austwickia chelonae, type sp., Dermatophilaceae

AF109792, Kineosphaera limosa, type sp., Dermatophilaceae

AB550799, Piscicoccus intestinalis, type sp., Dermatophilaceae

AB550798, Mobilicoccus pelagius, type sp., Dermatophilaceae

AJ243918, Dermatophilus congolensis, type sp., Dermatophilaceae

FJ487951, Intrasporangium chromatireducens, Intrasporangiaceae

Y08539, Janibacter limosus, type sp., Intrasporangiaceae

AF176948, Janibacter terrae, Intrasporangiaceae

FR749912, Janibacter hoylei, Intrasporangiaceae

AY837752, Janibacter anophelis, Intrasporangiaceae

AB286023, Janibacter corallicola, Intrasporangiaceae

AJ297722, Kytococcus schroeteri, Dermacoccaceae

FM992368, Kytococcus aerolatus, Dermacoccaceae

X87755, Kytococcus sedentarius, type sp., Dermacoccaceae

AB286025, Marihabitans asiaticum, type sp., Intrasporangiaceae

AY522568, Janibacter melonis, Intrasporangiaceae

DQ372707, Kribbia dieselivorans, type sp., Intrasporangiaceae

AJ566282, Intrasporangium calvum, type sp., Intrasporangiaceae

HQ204221, Intrasporangium mesophilum, Intrasporangiaceae

AB282887, Intrasporangium oryzae, type sp., Intrasporangiaceae

Y11928, Terracoccus luteus, type sp., Intrasporangiaceae

EU573947, Terrabacter aeriphilus, Intrasporangiaceae

AB282888, Humibacillus xanthopallidus, type sp., Intrasporangiaceae

AF005023, Terrabacter tumescens, type sp., Intrasporangiaceae

EU332827, Terrabacter ginsenosidimutans, Intrasporangiaceae

FJ717334, Terrabacter carboxydivorans, Intrasporangiaceae

AM690744, Terrabacter lapilli, Intrasporangiaceae

EF212039, Terrabacter aerolatus, Intrasporangiaceae

FJ423552, Terrabacter terrigena, Intrasporangiaceae

AY944176, Terrabacter terrae, Intrasporangiaceae

EF493847, Phycicoccus aerophilus, Intrasporangiaceae

EU332824, Phycicoccus ginsenosidimutans, Intrasporangiaceae

EF555583, Phycicoccus dokdonensis, Intrasporangiaceae

EF466128, Phycicoccus bigeumensis, Intrasporangiaceae

DQ345443, Phycicoccus jejuensis, type sp., Intrasporangiaceae

DQ345443, Phycicoccus jejuensis, type sp., Intrasporangiaceae

FJ529696, Phycicoccus cremeus, Intrasporangiaceae

FJ796074, Ornithinibacter aureus, type sp., Intrasporangiaceae

EU878005, Fodinibacter luteus, type sp., Intrasporangiaceae

EF553529, Knoellia aerolata, Intrasporangiaceae

HQ401007, Knoellia flava, Intrasporangiaceae

AJ294412, Knoellia sinensis, type sp., Intrasporangiaceae

AJ294413, Knoellia subterranea, Intrasporangiaceae

HQ171909, Knoellia locipacati, Intrasporangiaceae

AF125091, Tetrasphaera australiensis, Intrasporangiaceae

DQ007321, Tetrasphaera jenkinsii, Intrasporangiaceae

Y14595, Tetrasphaera veronensis, Intrasporangiaceae

DQ007320, Tetrasphaera vanveenii, Intrasporangiaceae

AB030911, Tetrasphaera elongata, Intrasporangiaceae

AB072496, Tetrasphaera duodecadis, Intrasporangiaceae

AF125092, Tetrasphaera japonica, type sp., Intrasporangiaceae

AB537173, Tetrasphaera remsis, Intrasporangiaceae

AM398397, Lapillicoccus jejuensis, type sp., Intrasporangiaceae

AB193172, Oryzihumus leptocrescens, type sp., Intrasporangiaceae

Y17869, Ornithinicoccus hortensis, type sp., Intrasporangiaceae

AB512285, Angustibacter luteus, type sp., Kineosporiaceae

Kineosporiaceae (11)

AB377116, Kineosporia babensis, Kineosporiaceae

AB377117, Kineosporia mikuniensis, Kineosporiaceae

AF095336, Kineosporia aurantiaca, type sp., Kineosporiaceae

AB003932, Kineosporia succinea, Kineosporiaceae

FJ214362, Kineosporia mesophila, Kineosporiaceae

FR749986, Kineosporia rhizophila, Kineosporiaceae

AB003935, Kineosporia rhamnosa, Kineosporiaceae

DQ200982, Pseudokineococcus marinus, Kineosporiaceae

FN824365, Pseudokineococcus lusitanus, type.sp, Kineosporiaceae

FM179321, Aquipuribacter hungaricus, type sp., Intrasporangiaceae

AY831385, Quadrisphaera granulorum, type sp., Kineosporiaceae

X77958, Kineococcus aurantiacus, type sp., Kineosporiaceae

FM210338, Kineococcus rhizosphaerae, Kineosporiaceae

AF247813, Kineococcus radiotolerans, Kineosporiaceae

EF667339, Kineococcus gynurae, Kineosporiaceae

EU543662, Kineococcus xinjiangensis, Kineosporiaceae

Nakamurellaceae (3)

DQ321750, Humicoccus flavidus, type sp., Nakamurellaceae

AM778124, Saxeibacter lacteus, type sp., Nakamurellaceae

Y08541, Nakamurella multipartita, type sp., Nakamurellaceae

D85465, Cryptosporangium arvum, type sp., Cryptosporangiaceae

D85466, Cryptosporangium japonicum, Cryptosporangiaceae

AJ293746, Cryptosporangium aurantiacum, Cryptosporangiaceae

AB037007, Cryptosporangium minutisporangium, Cryptosporangiaceae

EF490376, Fodinicola feengrottensis, type sp., Cryptosporangiaceae

Sporichthyaceae (2)

AB006164, Sporichthya brevicatena, Sporichthyaceae

AB025317, Sporichthya polymorpha, type sp., Sporichthyaceae

Geodermatophilaceae (8)

EU181225, Modestobacter marinus, Geodermatophilaceae

AJ871304, Modestobacter versicolor, Geodermatophilaceae

Y18646, Modestobacter multiseptatus, type sp., Geodermatophilaceae

DQ200983, Blastococcus jejuensis, Geodermatophilaceae

X92356, Geodermatophilus obscurus, type sp., Geodermatophilaceae

EU438905, Geodermatophilus ruber, Geodermatophilaceae

L40614, Blastococcus aggregatus, type sp., Geodermatophilaceae

FN600641, Blastococcus saxobsidens, Geodermatophilaceae

Streptomycetaceae (563)

AB184869, Streptomyces bambergiensis, Streptomycetaceae

DQ026658, Streptomyces prasinus, Streptomycetaceae

AB184882, Streptomyces cyanoalbus, Streptomycetaceae

DQ462649, Streptomyces emeiensis, Streptomycetaceae

AB249968, Streptomyces prasinopilosus, Streptomycetaceae

FR692091, Streptomyces herbaceus, Streptomycetaceae

FR692095, Streptomyces incanus, Streptomycetaceae

FR692098, Streptomyces pratens, Streptomycetaceae

DQ445792, Streptomyces poonensis, Streptomycetaceae

DQ442499, Streptomyces fumigatiscleroticus, Streptomycetaceae

AB184251, Streptomyces roseiscleroticus, Streptomycetaceae

AB184604, Streptomyces ruber, Streptomycetaceae

EF178683, Streptomyces spiralis, Streptomycetaceae

AB231805, Streptomyces nogalater, Streptomycetaceae

AB184390, Streptomyces prasinosporus, Streptomycetaceae

DQ442529, Streptomyces naganishii, Streptomycetaceae

AY999807, Streptomyces griseoviridis, Streptomycetaceae

GU225938, Streptomyces zinciresistens, Streptomycetaceae

AB249981, Streptomyces brasiliensis, Streptomycetaceae

AB184188, Streptomyces aurantiogriseus, Streptomycetaceae

AB018095, Streptomyces thermodiastaticus, Streptomycetaceae

AB184237, Streptomyces rochei, Streptomycetaceae

AY999929, Streptomyces vinaceusdrappus, Streptomycetaceae

AY999922, Streptomyces plicatus, Streptomycetaceae

EF178679, Streptomyces mutabilis, Streptomycetaceae

DQ442501, Streptomyces geysiriensis, Streptomycetaceae

EF178696, Streptomyces minutiscleroticus, Streptomycetaceae

AY999851, Streptomyces ghanaensis, Streptomycetaceae

AB184402, Streptomyces anandii, Streptomycetaceae

AB184137, Streptomyces griseomycini, Streptomycetaceae

AB184140, Streptomyces griseostramineus, Streptomycetaceae

AJ781333, Streptomyces graminearus, Streptomycetaceae

AB184665, Streptomyces glaucus, Streptomycetaceae

AF333113, Streptomyces thermospinosisporus, Streptomycetaceae

DQ442556, Streptomyces viridosporus, Streptomycetaceae

AB184706, Streptomyces asterosporus, Streptomycetaceae

AB184710, Streptomyces aureorectus, Streptomycetaceae

DQ442554, Streptomyces virens, Streptomycetaceae

AB184329, Streptomyces calvus, Streptomycetaceae

EF178674, Streptomyces azureus, Streptomycetaceae

AB184657, Streptomyces djakartensis, Streptomycetaceae

DQ442541, Streptomyces pseudogriseolus, Streptomycetaceae

X80824, Streptomyces caelestis, Streptomycetaceae

DQ442516, Streptomyces lavendulocolor, Streptomycetaceae

AY999854, Streptomyces viridiviolaceus, Streptomycetaceae

AB184273, Streptomyces fumanus, Streptomycetaceae

AB184574, Streptomyces carpinensis, Streptomycetaceae

AY999844, Streptomyces fimbriatus, Streptomycetaceae

AB184660, Streptomyces gancidicus, Streptomycetaceae

AB184660, Streptomyces gancidicus, Streptomycetaceae

AY999810, Streptomyces rubiginosus, Streptomycetaceae

DQ442495, Streptomyces cellulosae, Streptomycetaceae

AB184577, Streptomyces capillispiralis, Streptomycetaceae

AB184670, Streptomyces levis, Streptomycetaceae

AB184847, Streptomyces afghaniensis, Streptomycetaceae

AY208912, Streptomyces africanus, Streptomycetaceae

AB184690, Streptomyces tuirus, Streptomycetaceae

AB184255, Streptomyces albidoflavus, Streptomycetaceae

DQ442497, Streptomyces daghestanicus, Streptomycetaceae

AB184868, Streptomyces hydrogenans, Streptomycetaceae

AJ399491, Streptomyces griseochromogenes, Streptomycetaceae

AY999737, Streptomyces violascens, Streptomycetaceae

AJ399472, Streptomyces resistomycificus, Streptomycetaceae

AY079156, Streptomyces koyangensis, Streptomycetaceae

FN429653, Streptomyces tacrolimicus, Streptomycetaceae

AJ399485, Streptomyces arenae, Streptomycetaceae

AB184316, Streptomyces violarus, Streptomycetaceae

AB184143, Streptomyces hawaiiensis, Streptomycetaceae

AB184152, Streptomyces massasporeus, Streptomycetaceae

AB184379, Streptomyces luteogriseus, Streptomycetaceae

AB184851, Streptomyces janthinus, Streptomycetaceae

AB184315, Streptomyces violaceus, Streptomycetaceae

AJ781327, Streptomyces albosporeus subsp. albosporeus, Streptomycetaceae

AJ399484, Streptomyces roseoviolaceus, Streptomycetaceae

AB184842, Streptomyces flavoviridis, Streptomycetaceae

AB184161, Streptomyces pilosus, Streptomycetaceae

DQ026672, Streptomyces atrovirens, Streptomycetaceae

AF361786, Streptomyces niveiscabiei, Streptomycetaceae

HM748598, Streptomyces gramineus, Streptomycetaceae

AB184507, Streptomyces cinerochromogenes, Streptomycetaceae

AB184648, Streptomyces cinereospinus, Streptomycetaceae

DQ026668, Streptomyces coeruleofuscus, Streptomycetaceae

AB249966, Streptomyces mexicanus, Streptomycetaceae

AJ007402, Streptomyces thermocoprophilus, Streptomycetaceae

Z68094, Streptomyces thermovulgaris, Streptomycetaceae

AB249980, Streptomyces thermogriseus, Streptomycetaceae

AB249909, Streptomyces thermoalcalitolerans, Streptomycetaceae

Z68095, Streptomyces thermoviolaceus subsp. apingens, Streptomycetaceae

AB184194, Streptomyces chromofuscus, Streptomycetaceae

AB184421, Streptomyces bluensis, Streptomycetaceae

U94489, Streptomyces thermocarboxydovorans, Streptomycetaceae

Z68096, Streptomyces thermoviolaceus subsp. thermoviolaceus, Streptomycetaceae

FM998652, Streptomyces hyderabadensis, Streptomycetaceae

AB184673, Streptomyces lomondensis, Streptomycetaceae

AB184651, Streptomyces coeruleoprunus, Streptomycetaceae

AJ007403, Streptomyces somaliensis, Streptomycetaceae

DQ026630, Streptomyces fradiae, Streptomycetaceae

AB249917, Streptomyces glomeratus, Streptomycetaceae

AY750056, Streptomyces bangladeshensis, Streptomycetaceae

AY999821, Streptomyces rameus, Streptomycetaceae

AB184419, Streptomyces griseosporeus, Streptomycetaceae

AB184553, Streptomyces indiaensis, Streptomycetaceae

AJ399486, Streptomyces purpurascens, Streptomycetaceae

AB184877, Streptomyces iakyrus, Streptomycetaceae

AY999720, Streptomyces coerulescens, Streptomycetaceae

AB184849, Streptomyces bellus, Streptomycetaceae

AB184424, Streptomyces lusitanus, Streptomycetaceae

U94490, Streptomyces thermocarboxydus, Streptomycetaceae

AF452714, Streptomyces speibonae, Streptomycetaceae

AB184440, Streptomyces longispororuber, Streptomycetaceae

AY999852, Streptomyces viridodiastaticus, Streptomycetaceae

AY999719, Streptomyces coeruleorubidus, Streptomycetaceae

AB249954, Streptomyces malachitospinus, Streptomycetaceae

AB184326, Streptomyces parvulus, Streptomycetaceae

AB184578, Streptomyces spinoverrucosus, Streptomycetaceae

AB184743, Streptomyces olivaceus, Streptomycetaceae

AB184398, Streptomyces pactum, Streptomycetaceae

AB184631, Streptomyces anthocyanicus, Streptomycetaceae

AB184687, Streptomyces tricolor, Streptomycetaceae

AF503496, Streptomyces coelescens, Streptomycetaceae

AF503491, Streptomyces humiferus, Streptomycetaceae

AF503497, Streptomyces violaceolatus, Streptomycetaceae

AF503492, Streptomyces violaceoruber, Streptomycetaceae

AB184650, Streptomyces coelicoflavus, Streptomycetaceae

AY999917, Streptomyces fragilis, Streptomycetaceae

AB184681, Streptomyces rubrogriseus, Streptomycetaceae

AJ781374, Streptomyces violaceorubidus, Streptomycetaceae

D63873, Streptomyces tendae, Streptomycetaceae

DQ026631, Streptomyces diastaticus subsp. ardesiacus, Streptomycetaceae

DQ345779, Streptomyces tritolerans, Streptomycetaceae

AY295791, Streptomyces chattanoogensis, Streptomycetaceae

AJ781353, Streptomyces lienomycini, Streptomycetaceae

AY177662, Streptomyces albogriseolus, Streptomycetaceae

AJ965470, Streptomyces marokkonensis, Streptomycetaceae

FM202482, Streptomyces thinghirensis, Streptomycetaceae

AY999846, Streptomyces achromogenes subsp. rubradiris, Streptomycetaceae

AY999808, Streptomyces althioticus, Streptomycetaceae

AB184221, Streptomyces matensis, Streptomycetaceae

AB184139, Streptomyces griseorubens, Streptomycetaceae

AB184704, Streptomyces labedae, Streptomycetaceae

DQ442551, Streptomyces variabilis, Streptomycetaceae

AJ781328, Streptomyces erythrogriseus, Streptomycetaceae

AJ781321, Streptomyces griseoincarnatus, Streptomycetaceae

AB184712, Streptomyces heliomycini, Streptomycetaceae

AY999757, Streptomyces albaduncus, Streptomycetaceae

AB184275, Streptomyces griseoloalbus, Streptomycetaceae

AB184282, Streptomyces malachitofuscus, Streptomycetaceae

AJ781322, Streptomyces griseoflavus, Streptomycetaceae

AB184742, Streptomyces gougerotii, Streptomycetaceae

AB184170, Streptomyces rutgersensis, Streptomycetaceae

AB184785, Streptomyces diastaticus subsp. diastaticus, Streptomycetaceae

AB184277, Streptomyces intermedius, Streptomycetaceae

AY999774, Streptomyces aureoverticillatus, Streptomycetaceae

EU812170, Streptomyces silaceus, Streptomycetaceae

AB184359, Streptomyces flavofungini, Streptomycetaceae

AB184787, Streptomyces fulvissimus, Streptomycetaceae

AB184393, Streptomyces spectabilis, Streptomycetaceae

EF178699, Streptomyces alboflavus, Streptomycetaceae

AJ781371, Streptomyces variegatus, Streptomycetaceae

AF184081, Streptomyces scopiformis, Streptomycetaceae

AB184676, Streptomyces griseoaurantiacus, Streptomycetaceae

AY314783, Streptomyces jietaisiensis, Streptomycetaceae

AB184123, Streptomyces collinus, Streptomycetaceae

AB184123, Streptomyces collinus, Streptomycetaceae

AB184628, Streptomyces paradoxus, Streptomycetaceae

AY999867, Streptomyces violaceochromogenes, Streptomycetaceae

AB184182, Streptomyces ambofaciens, Streptomycetaceae

D63870, Streptomyces eurythermus, Streptomycetaceae

AF114033, Streptomyces nodosus, Streptomycetaceae

DQ442555, Streptomyces viridochromogenes, Streptomycetaceae

AB184843, Streptomyces glaucescens, Streptomycetaceae

AY699792, Streptomyces pharetrae, Streptomycetaceae

AB184764, Streptomyces flaveolus, Streptomycetaceae

EF178678, Streptomyces misionensis, Streptomycetaceae

AJ391814, Streptomyces phaeoluteichromatogenes, Streptomycetaceae

AB184206, Streptomyces griseofuscus, Streptomycetaceae

AB184155, Streptomyces murinus, Streptomycetaceae

AB249939, Streptomyces costaricanus, Streptomycetaceae

AJ391813, Streptomyces phaeogriseichromatogenes, Streptomycetaceae

AJ399465, Streptomyces echinatus, Streptomycetaceae

AB184845, Streptomyces lanatus, Streptomycetaceae

AY999785, Streptomyces durhamensis, Streptomycetaceae

AB184198, Streptomyces filipinensis, Streptomycetaceae

AF361785, Streptomyces puniciscabiei, Streptomycetaceae

DQ026652, Streptomyces yokosukanensis, Streptomycetaceae

AY999742, Streptomyces cellostaticus, Streptomycetaceae

X79852, Streptomyces galbus, Streptomycetaceae

AB184580, Streptomyces longwoodensis, Streptomycetaceae

AB184696, Streptomyces bungoensis, Streptomycetaceae

AB045877, Streptomyces capoamus, Streptomycetaceae

DQ026649, Streptomyces regensis, Streptomycetaceae

AB184267, Streptomyces corchorusii, Streptomycetaceae

AB184288, Streptomyces olivaceoviridis, Streptomycetaceae

AB184396, Streptomyces canarius, Streptomycetaceae

DQ442522, Streptomyces lucensis, Streptomycetaceae

DQ445796, Streptomyces niveoruber, Streptomycetaceae

AB184109, Streptomyces achromogenes subsp. achromogenes, Streptomycetaceae

AJ781339, Streptomyces griseorubiginosus, Streptomycetaceae

DQ026666, Streptomyces phaeopurpureus, Streptomycetaceae

DQ026659, Streptomyces prunicolor, Streptomycetaceae

BA000030, Streptomyces avermitilis , Streptomycetaceae

EU812169, Streptomyces atriruber, Streptomycetaceae

AB184412, Streptomyces mirabilis, Streptomycetaceae

AY094370, Streptomyces olivochromogenes, Streptomycetaceae

AB184072, Streptomyces cinereus, Streptomycetaceae

DQ026643, Streptomyces flaveus, Streptomycetaceae

DQ442552, Streptomyces vastus, Streptomycetaceae

EF157833, Streptomyces indicus, Streptomycetaceae

AY999861, Streptomyces aureocirculatus, Streptomycetaceae

AB184357, Streptomyces novaecaesareae, Streptomycetaceae

AB184328, Streptomyces bobili, Streptomycetaceae

AB045878, Streptomyces galilaeus, Streptomycetaceae

AJ391815, Streptomyces phaeoluteigriseus, Streptomycetaceae

EF178691, Streptomyces flavovariabilis, Streptomycetaceae

AB184839, Streptomyces chartreusis, Streptomycetaceae

FJ613126, Streptomyces osmaniensis, Streptomycetaceae

EU526954, Streptomyces plumbiresistens, Streptomycetaceae

AY845349, Streptomyces alboniger, Streptomycetaceae

AY999751, Streptomyces griseoluteus, Streptomycetaceae

AB184165, Streptomyces recifensis, Streptomycetaceae

AB249970, Streptomyces seoulensis, Streptomycetaceae

AB184233, Streptomyces pseudovenezuelae, Streptomycetaceae

AY999775, Streptomyces canus, Streptomycetaceae

AB184208, Streptomyces ciscaucasicus, Streptomycetaceae

GQ329712, Streptomyces caeruleatus, Streptomycetaceae

AB184279, Streptomyces lincolnensis, Streptomycetaceae

FJ465151, Streptomyces shaanxiensis, Streptomycetaceae

DQ067287, Streptomyces durmitorensis, Streptomycetaceae

DQ026660, Streptomyces rectiviolaceus, Streptomycetaceae

AY094368, Streptomyces aureus, Streptomycetaceae

DQ442511, Streptomyces kanamyceticus, Streptomycetaceae

AY999824, Streptomyces ederensis, Streptomycetaceae

AB184305, Streptomyces umbrinus, Streptomycetaceae

AB184738, Streptomyces phaeochromogenes, Streptomycetaceae

AB045879, Streptomyces tauricus, Streptomycetaceae

AJ781383, Streptomyces aurantiacus, Streptomycetaceae

AB249983, Streptomyces glomeroaurantiacus, Streptomycetaceae

AB184262, Streptomyces bottropensis, Streptomycetaceae

AJ007429, Streptomyces stelliscabiei, Streptomycetaceae

DQ026644, Streptomyces cacaoi subsp. asoensis, Streptomycetaceae

DQ442508, Streptomyces humidus, Streptomycetaceae

EF178682, Streptomyces rishiriensis, Streptomycetaceae

AJ007428, Streptomyces reticuliscabiei, Streptomycetaceae

AB026221, Streptomyces turgidiscabies, Streptomycetaceae

AB184560, Streptomyces hygroscopicus subsp. ossamyceticus, Streptomycetaceae

AJ781367, Streptomyces torulosus, Streptomycetaceae

AB184857, Streptomyces ipomoeae, Streptomycetaceae

EU170127, Streptomyces decoyicus, Streptomycetaceae

D63869, Streptomyces neyagawaensis, Streptomycetaceae

D63867, Streptomyces diastatochromogenes, Streptomycetaceae

AY207598, Streptomyces europaeiscabiei, Streptomycetaceae

D63862, Streptomyces scabiei, Streptomycetaceae

EF219459, Streptomyces deccanensis, Streptomycetaceae

AY999758, Streptomyces cinereoruber subsp. fructofermentans, Streptomycetaceae

AB184360, Streptomyces phaeofaciens, Streptomycetaceae

DQ442542, Streptomyces puniceus, Streptomycetaceae

AF346475, Streptomyces cyaneus, Streptomycetaceae

D63865, Streptomyces acidiscabies, Streptomycetaceae

AB498741, Streptomyces spongiae, Streptomycetaceae

AB184209, Streptomyces griseoruber, Streptomycetaceae

AY999776, Streptomyces antibioticus, Streptomycetaceae

AB184442, Streptomyces alanosinicus, Streptomycetaceae

AB184266, Streptomyces cinnabarinus, Streptomycetaceae

DQ442513, Streptomyces kunmingensis, Streptomycetaceae

AB184841, Streptomyces curacoi, Streptomycetaceae

AB184270, Streptomyces flavidovirens, Streptomycetaceae

AJ399475, Streptomyces longisporus, Streptomycetaceae

AB500703, Streptomyces coacervatus, Streptomycetaceae

AJ781342, Streptomyces laurentii, Streptomycetaceae

AB184302, Streptomyces termitum, Streptomycetaceae

AB184327, Streptomyces roseofulvus, Streptomycetaceae

AB184168, Streptomyces roseolus, Streptomycetaceae

AB184130, Streptomyces filamentosus, Streptomycetaceae

AB184389, Streptomyces showdoensis, Streptomycetaceae

AJ781372, Streptomyces viridobrunneus, Streptomycetaceae

AB184239, Streptomyces roseoviridis, Streptomycetaceae

DQ317411, Streptomyces gulbargensis, Streptomycetaceae

AB249953, Streptomyces albidochromogenes, Streptomycetaceae

AB249953, Streptomyces albidochromogenes, Streptomycetaceae

AB249930, Streptomyces enissocaesilis, Streptomycetaceae

AY999787, Streptomyces chryseus, Streptomycetaceae

AB184367, Streptomyces helvaticus, Streptomycetaceae

EU196762, Streptomyces hypolithicus, Streptomycetaceae

AB184638, Streptomyces albosporeus subsp. labilomyceticus, Streptomycetaceae

AB184286, Streptomyces nashvillensis, Streptomycetaceae

AY999771, Streptomyces cinereoruber subsp. cinereoruber, Streptomycetaceae

DQ442506, Streptomyces hirsutus, Streptomycetaceae

AB184314, Streptomyces violaceorectus, Streptomycetaceae

X79851, Streptomyces bikiniensis, Streptomycetaceae

DQ311081, Streptomyces vietnamensis, Streptomycetaceae

AB184149, Streptomyces litmocidini, Streptomycetaceae

EF178684, Streptomyces yerevanensis, Streptomycetaceae

EF178697, Streptomyces omiyaensis, Streptomycetaceae

DQ442557, Streptomyces wedmorensis, Streptomycetaceae

EF178685, Streptomyces zaomyceticus, Streptomycetaceae

AB184324, Streptomyces exfoliatus, Streptomycetaceae

DQ445794, Streptomyces narbonensis, Streptomycetaceae

AJ781326, Streptomyces lateritius, Streptomycetaceae

AB045890, Streptomyces venezuelae, Streptomycetaceae

AJ781355, Streptomyces nojiriensis, Streptomycetaceae

AB184394, Streptomyces vinaceus, Streptomycetaceae

AJ781370, Streptomyces spororaveus, Streptomycetaceae

DQ442560, Streptomyces xanthophaeus, Streptomycetaceae

AY999794, Streptomyces cirratus, Streptomycetaceae

AB184395, Streptomyces avidinii, Streptomycetaceae

X80825, Streptomyces subrutilus, Streptomycetaceae

AY999841, Streptomyces lavendulae subsp. grasserius, Streptomycetaceae

DQ442544, Streptomyces sporoverrucosus, Streptomycetaceae

EF178693, Streptomyces goshikiensis, Streptomycetaceae

DQ026646, Streptomyces colombiensis, Streptomycetaceae

D85116, Streptomyces lavendulae subsp. lavendulae, Streptomycetaceae

AB184707, Streptomyces cinnamonensis, Streptomycetaceae

AB184175, Streptomyces virginiae, Streptomycetaceae

AJ781330, Streptomyces globosus, Streptomycetaceae

DQ442548, Streptomyces toxytricini, Streptomycetaceae

AY999915, Streptomyces flavotricini, Streptomycetaceae

AB184292, Streptomyces polychromogenes, Streptomycetaceae

DQ026656, Streptomyces racemochromogenes, Streptomycetaceae

AB184409, Streptomyces katrae, Streptomycetaceae

AY999718, Streptomyces clavuligerus, Streptomycetaceae

AB184325, Streptomyces kurssanovii, Streptomycetaceae

AB184349, Streptomyces xantholiticus, Streptomycetaceae

AB045887, Streptomyces peucetius, Streptomycetaceae

FJ261968, Streptomyces sanyensis, Streptomycetaceae

AY999744, Streptomyces cremeus, Streptomycetaceae

AB184814, Streptomyces spiroverticillatus, Streptomycetaceae

AB249945, Streptomyces sanglieri, Streptomycetaceae

AB006159, Streptomyces yanii, Streptomycetaceae

DQ026638, Streptomyces atratus, Streptomycetaceae

DQ026636, Streptomyces gelaticus, Streptomycetaceae

AB184806, Streptomyces pulveraceus, Streptomycetaceae

FR692106, Streptomyces laculatispora, Streptomycetaceae

FR692104, Streptomyces brevispora, Streptomycetaceae

AF385681, Streptomyces beijiangensis, Streptomycetaceae

AB249957, Streptomyces drozdowiczii, Streptomycetaceae

AB249958, Streptomyces albovinaceus, Streptomycetaceae

EF178686, Streptomyces globisporus, Streptomycetaceae

AB184240, Streptomyces rubiginosohelvolus, Streptomycetaceae

AY999856, Streptomyces tanashiensis, Streptomycetaceae

DQ442540, Streptomyces pluricolorescens, Streptomycetaceae

AJ494864, Streptomyces flavogriseus, Streptomycetaceae

DQ026635, Streptomyces flavovirens, Streptomycetaceae

EF178680, Streptomyces nitrosporeus, Streptomycetaceae

AB184768, Streptomyces griseolus, Streptomycetaceae

EF178695, Streptomyces halstedii, Streptomycetaceae

AB184646, Streptomyces cinereorectus, Streptomycetaceae

AB184711, Streptomyces fulvorobeus, Streptomycetaceae

DQ445795, Streptomyces microflavus, Streptomycetaceae

AY207604, Streptomyces griseus, Streptomycetaceae

AB184860, Streptomyces cyaneofuscatus, Streptomycetaceae

DQ026637, Streptomyces anulatus, Streptomycetaceae

AB184120, Streptomyces chrysomallus subsp. chrysomallus, Streptomycetaceae

AY999784, Streptomyces fimicarius, Streptomycetaceae

AY999894, Streptomyces griseoplanus, Streptomycetaceae

AY999783, Streptomyces badius, Streptomycetaceae

AB184759, Streptomyces sindenensis, Streptomycetaceae

DQ442537, Streptomyces parvus, Streptomycetaceae

AJ781320, Streptomyces atroolivaceus, Streptomycetaceae

DQ026670, Streptomyces clavifer, Streptomycetaceae

AB249951, Streptomyces mutomycini, Streptomycetaceae

AY999788, Streptomyces finlayi, Streptomycetaceae

DQ026663, Streptomyces candidus, Streptomycetaceae

AB184425, Streptomyces albolongus, Streptomycetaceae

DQ445791, Streptomyces cavourensis, Streptomycetaceae

AB184439, Streptomyces bacillaris, Streptomycetaceae

AB184652, Streptomyces crystallinus, Streptomycetaceae

AB184413, Streptomyces avellaneus, Streptomycetaceae

AY999862, Streptomyces psammoticus, Streptomycetaceae

AY207608, Streptomyces aureofaciens, Streptomycetaceae

AY189976, Kitasatospora putterlickiae, Streptomycetaceae

AY260167, Kitasatospora sampliensis, Streptomycetaceae

AB184645, Streptomyces chrysomallus subsp. fumigatus, Streptomycetaceae

AJ781324, Streptomyces purpureus, Streptomycetaceae

AY999858, Streptomyces xanthocidicus, Streptomycetaceae

AY999886, Streptomyces aburaviensis, Streptomycetaceae

AB278569, Kitasatospora kazusensis, Streptomycetaceae

U93324, Kitasatospora mediocidica, Streptomycetaceae

AY442265, Kitasatospora gansuensis, Streptomycetaceae

DQ026645, Kitasatospora atroaurantiaca, Streptomycetaceae

AJ781364, Streptomyces purpeofuscus, Streptomycetaceae

AB184801, Streptomyces herbaricolor, Streptomycetaceae

AB184214, Streptomyces indigoferus, Streptomycetaceae

U93312, Kitasatospora azatica, Streptomycetaceae

AY442263, Kitasatospora nipponensis, Streptomycetaceae

U93322, Kitasatospora kifunensis, Streptomycetaceae

AB022875, Kitasatospora cineracea, Streptomycetaceae

AB249960, Kitasatospora niigatensis, Streptomycetaceae

U93332, Kitasatospora setae, type sp., Streptomycetaceae

U93316, Kitasatospora cochleata, Streptomycetaceae

U93328, Kitasatospora paracochleata, Streptomycetaceae

AY999887, Kitasatospora cystarginea, Streptomycetaceae

U93320, Kitasatospora griseola, Streptomycetaceae

AF050493, Kitasatospora cheerisanensis, Streptomycetaceae

AF050493, Kitasatospora cheerisanensis, Streptomycetaceae

AB022869, Kitasatospora phosalacinea, Streptomycetaceae

AY442267, Kitasatospora arboriphila, Streptomycetaceae

AY613990, Kitasatospora viridis, Streptomycetaceae

AB278568, Kitasatospora saccharophila, Streptomycetaceae

AY442266, Kitasatospora terrestris, Streptomycetaceae

AY442268, Kitasatospora paranensis, Streptomycetaceae

DQ904546, Streptacidiphilus anmyonensis, Streptomycetaceae

AB249948, Streptacidiphilus jiangxiensis, Streptomycetaceae

DQ994689, Streptacidiphilus melanogenes, Streptomycetaceae

DQ904547, Streptacidiphilus rugosus, Streptomycetaceae

AB249949, Streptacidiphilus neutrinimicus, Streptomycetaceae

AF074415, Streptacidiphilus albus, type sp., Streptomycetaceae

AF074412, Streptacidiphilus carbonis, Streptomycetaceae

EF657884, Streptomyces scopuliridis, Streptomycetaceae

AB184579, Streptomyces sannanensis, Streptomycetaceae

AB184153, Streptomyces michiganensis, Streptomycetaceae

DQ442559, Streptomyces xanthochromogenes, Streptomycetaceae

AB184532, Streptomyces mauvecolor, Streptomycetaceae

DQ141528, Streptomyces polyantibioticus, Streptomycetaceae

AB184222, Streptomyces melanogenes, Streptomycetaceae

AB184287, Streptomyces noboritoensis, Streptomycetaceae

AY999781, Streptomyces amakusaensis, Streptomycetaceae

AB184445, Streptomyces inusitatus, Streptomycetaceae

DQ442523, Streptomyces luridus, Streptomycetaceae

AB184167, Streptomyces roseolilacinus, Streptomycetaceae

AB184666, Streptomyces gobitricini, Streptomycetaceae

AJ781336, Streptomyces lavendofoliae, Streptomycetaceae

DQ442558, Streptomyces werraensis, Streptomycetaceae

AY999790, Streptomyces eurocidicus, Streptomycetaceae

EF178671, Streptomyces netropsis, Streptomycetaceae

AB184720, Streptomyces stramineus, Streptomycetaceae

AB184636, Streptomyces olivoverticillatus, Streptomycetaceae

AB184866, Streptomyces orinoci, Streptomycetaceae

AJ781349, Streptomyces morookaense, Streptomycetaceae

GQ184344, Streptomyces lacticiproducens, Streptomycetaceae

DQ442515, Streptomyces lavenduligriseus, Streptomycetaceae

AB184850, Streptomyces cinnamoneus, Streptomycetaceae

AB184100, Streptomyces pseudoechinosporeus, Streptomycetaceae

AB184819, Streptomyces lilacinus, Streptomycetaceae

DQ442525, Streptomyces luteosporeus, Streptomycetaceae

AB184864, Streptomyces ardus, Streptomycetaceae

AY999802, Streptomyces blastmyceticus, Streptomycetaceae

AB184789, Streptomyces hiroshimensis, Streptomycetaceae

EF178675, Streptomyces caeruleus, Streptomycetaceae

X99943, Streptomyces griseocarneus, Streptomycetaceae

DQ442509, Streptomyces angustmyceticus, Streptomycetaceae

AY999834, Streptomyces abikoensis, Streptomycetaceae

DQ026653, Streptomyces varsoviensis, Streptomycetaceae

AB249969, Streptomyces luteireticuli, Streptomycetaceae

AB184753, Streptomyces thioluteus, Streptomycetaceae

X79323, Streptomyces mashuensis, Streptomycetaceae

DQ442528, Streptomyces mobaraensis, Streptomycetaceae

AB184094, Streptomyces ochraceiscleroticus, Streptomycetaceae

AJ621604, Streptomyces purpurogeneiscleroticus, Streptomycetaceae

AJ621605, Streptomyces violens, Streptomycetaceae

AJ621607, Streptomyces niger, Streptomycetaceae

AJ621606, Streptomyces olivaceiscleroticus, Streptomycetaceae

DQ445790, Streptomyces monomycini, Streptomycetaceae

AB184640, Streptomyces caniferus, Streptomycetaceae

AY999883, Streptomyces hygroscopicus subsp. decoyicus, Streptomycetaceae

AJ781351, Streptomyces libani subsp. rufus, Streptomycetaceae

AB184479, Streptomyces hygroscopicus subsp. glebosus, Streptomycetaceae

AB045882, Streptomyces platensis, Streptomycetaceae

Y15507, Streptomyces lydicus, Streptomycetaceae

AB184414, Streptomyces libani subsp. libani, Streptomycetaceae

AJ621612, Streptomyces tubercidicus, Streptomycetaceae

DQ026662, Streptomyces ramulosus, Streptomycetaceae

AJ621608, Streptomyces sclerotialus, Streptomycetaceae

AB045883, Streptomyces rimosus subsp. rimosus, Streptomycetaceae

AB045880, Streptomyces albofaciens, Streptomycetaceae

AJ621609, Streptomyces chrestomyceticus, Streptomycetaceae

AJ621610, Streptomyces rimosus subsp. paromomycinus, Streptomycetaceae

AJ621613, Streptomyces catenulae, Streptomycetaceae

AB217605, Streptomyces misakiensis, Streptomycetaceae

DQ094838, Streptomyces lunalinharesii, Streptomycetaceae

AJ391816, Streptomyces auratus, Streptomycetaceae

FR692111, Streptomyces staurosporininus, Streptomycetaceae

DQ442530, Streptomyces nigrescens, Streptomycetaceae

DQ026654, Streptomyces sioyaensis, Streptomycetaceae

AY999753, Streptomyces albospinus, Streptomycetaceae

AB024440, Streptomyces albulus, Streptomycetaceae

AB184678, Streptomyces noursei, Streptomycetaceae

AF346818, Streptomyces yunnanensis, Streptomycetaceae

AB184476, Streptomyces celluloflavus, Streptomycetaceae

AB024441, Streptomyces kasugaensis, Streptomycetaceae

FN421338, Streptomyces youssoufiensis, Streptomycetaceae

DQ442546, Streptomyces sulphureus, Streptomycetaceae

AB184090, Streptomyces cuspidosporus, Streptomycetaceae

AB184301, Streptomyces sparsogenes, Streptomycetaceae

EU170123, Streptomyces aldersoniae, Streptomycetaceae

EU170126, Streptomyces milbemycinicus, Streptomycetaceae

EU170124, Streptomyces wellingtoniae, Streptomycetaceae

EU170121, Streptomyces ascomycinicus, Streptomycetaceae

AB249974, Streptomyces sulfonofaciens, Streptomycetaceae

EF408733, Streptomyces rapamycinicus, Streptomycetaceae

AB249918, Streptomyces malaysiensis, Streptomycetaceae

EU077190, Streptomyces samsunensis, Streptomycetaceae

FJ472862, Streptomyces iranensis, Streptomycetaceae

AB184428, Streptomyces hygroscopicus subsp. hygroscopicus, Streptomycetaceae

AB249933, Streptomyces sporocinereus, Streptomycetaceae

AY999911, Streptomyces endus, Streptomycetaceae

DQ334782, Streptomyces demainii, Streptomycetaceae

AJ391812, Streptomyces albiflaviniger, Streptomycetaceae

AB184420, Streptomyces violaceusniger, Streptomycetaceae

AB249942, Streptomyces yogyakartensis, Streptomycetaceae

AJ391818, Streptomyces griseiniger, Streptomycetaceae

AJ391833, Streptomyces javensis, Streptomycetaceae

AJ391831, Streptomyces cangkringensis, Streptomycetaceae

DQ334783, Streptomyces indonesiensis, Streptomycetaceae

AB249947, Streptomyces asiaticus, Streptomycetaceae

AB249941, Streptomyces rhizosphaericus, Streptomycetaceae

DQ334781, Streptomyces geldanamycininus, Streptomycetaceae

AB249962, Streptomyces yatensis, Streptomycetaceae

AB249962, Streptomyces yatensis, Streptomycetaceae

AJ271887, Streptomyces melanosporofaciens, Streptomycetaceae

AB184185, Streptomyces antimycoticus, Streptomycetaceae

AB249934, Streptomyces sporoclivatus, Streptomycetaceae

AY508511, Streptomyces castelarensis, Streptomycetaceae

EF408735, Streptomyces mordarskii, Streptomycetaceae

EF408736, Streptomyces himastatinicus, Streptomycetaceae

AB184624, Streptomyces aculeolatus, Streptomycetaceae

EF121313, Streptomyces synnematoformans, Streptomycetaceae

AB184501, Streptomyces albus subsp. pathocidicus, Streptomycetaceae

AY277529, Streptomyces hebeiensis, Streptomycetaceae

AM934703, Streptomyces specialis, Streptomycetaceae

EU925562, Streptomyces sedi, Streptomycetaceae

EU399234, Streptomyces avicenniae, Streptomycetaceae

AM398645, Streptomyces hainanensis, Streptomycetaceae

EU200683, Streptomyces mayteni, Streptomycetaceae

DQ442494, Streptomyces carpaticus, Streptomycetaceae

AY822606, Streptomyces cheonanensis, Streptomycetaceae

EF012099, Streptomyces xiamenensis, Streptomycetaceae

AY236339, Streptomyces sodiiphilus, Streptomycetaceae

AB473557, Streptomyces rubrus, Streptomycetaceae

AB473554, Streptomyces marinus, Streptomycetaceae

EU589334, Streptomyces nanshensis, Streptomycetaceae

AB473556, Streptomyces haliclonae, Streptomycetaceae

AB473555, Streptomyces tateyamensis, Streptomycetaceae

FR692107, Streptomyces cocklensis, Streptomycetaceae

AB184771, Streptomyces almquistii, Streptomycetaceae

AB184663, Streptomyces gibsonii, Streptomycetaceae

AB184295, Streptomyces rangoonensis, Streptomycetaceae

AJ621602, Streptomyces albus subsp. albus, type sp., Streptomycetaceae

AB184272, Streptomyces flocculus, Streptomycetaceae

HQ660227, Streptomyces qinglanensis, Streptomycetaceae

AB184115, Streptomyces cacaoi subsp. cacaoi, Streptomycetaceae

AB018092, Streptomyces armeniacus, Streptomycetaceae

EU200685, Streptomyces artemisiae, Streptomycetaceae

FR693804, Streptomyces pharmamarensis, Streptomycetaceae

AB245388, Streptomyces panacagri, Streptomycetaceae

AY999901, Streptomyces albiaxialis, Streptomycetaceae

AY262826, Streptomyces ferralitis, Streptomycetaceae

EF577247, Streptomyces xinghaiensis, Streptomycetaceae

AY876941, Streptomyces rubidus, Streptomycetaceae

AF101415, Streptomyces yeochonensis, Streptomycetaceae

EU683612, Streptomyces axinellae, Streptomycetaceae

DQ460470, Streptomyces alni, Streptomycetaceae

AY876943, Streptomyces paucisporeus, Streptomycetaceae

AY876940, Streptomyces yanglinensis, Streptomycetaceae

AB249964, Streptomyces glauciniger, Streptomycetaceae

AY876942, Streptomyces guanduensis, Streptomycetaceae

AB441718, Streptomyces baliensis, Streptomycetaceae

AJ849545, Streptomyces sparsus, Streptomycetaceae

Z68099, Streptomyces macrosporus, Streptomycetaceae

AB184617, Streptomyces megasporus, Streptomycetaceae

AB184664, Streptomyces glaucosporus, Streptomycetaceae

GU356598, Streptomyces fenghuangensis, Streptomycetaceae

GQ871748, Streptomyces nanhaiensis, Streptomycetaceae

DQ912930, Streptomyces radiopugnans, Streptomycetaceae

Z68097, Streptomyces thermolineatus, Streptomycetaceae

AB184589, Streptomyces vitaminophilus, Streptomycetaceae

DQ208700, Streptacidiphilus oryzae, Streptomycetaceae

AB030585, Streptomyces scabrisporus, Streptomycetaceae

AB522686, Streptomyces aomiensis, Streptomycetaceae

FM998003, Motilibacter peucedani, type sp., Unclassified suborder Frankineae

Catenulisporaceae (4)

AJ865857, Catenulispora acidiphila, type sp., Catenulisporaceae

AB180773, Catenulispora rubra, Catenulisporaceae

AB327248, Catenulispora subtropica, Catenulisporaceae

AB327250, Catenulispora yoronensis, Catenulisporaceae

Actinospicaceae (2)

AJ865861, Actinospica acidiphila, Actinospicaceae

AJ865863, Actinospica robiniae, type sp., Actinospicaceae

Mycobacteriaceae (151)

X52934, Mycobacterium avium subsp. paratuberculosis, Mycobacteriaceae

EF521891, Mycobacterium avium subsp. silvaticum, Mycobacteriaceae

AJ536037, Mycobacterium avium subsp. avium, Mycobacteriaceae

EU834055, Mycobacterium vulneris, Mycobacteriaceae

EF591053, Mycobacterium bouchedurhonense, Mycobacteriaceae

AM062764, Mycobacterium colombiense, Mycobacteriaceae

FJ042897, Mycobacterium mantenii, Mycobacteriaceae

EF054881, Mycobacterium arosiense, Mycobacteriaceae

AJ536036, Mycobacterium intracellulare, Mycobacteriaceae

AJ548480, Mycobacterium chimaera, Mycobacteriaceae

EU266632, Mycobacterium marseillense, Mycobacteriaceae

GQ153270, Mycobacterium paraffinicum, Mycobacteriaceae

AF480604, Mycobacterium scrofulaceum, Mycobacteriaceae

DQ536403, Mycobacterium seoulense, Mycobacteriaceae

DQ536404, Mycobacterium paraseoulense, Mycobacteriaceae

X52930, Mycobacterium malmoense, Mycobacteriaceae

AY368456, Mycobacterium nebraskense, Mycobacteriaceae

U84502, Mycobacterium bohemicum, Mycobacteriaceae

AJ131120, Mycobacterium caprae, Mycobacteriaceae

X58890, Mycobacterium tuberculosis, type sp., Mycobacteriaceae

AF480605, Mycobacterium africanum, Mycobacteriaceae

AF480584, Mycobacterium microti, Mycobacteriaceae

AF502574, Mycobacterium pinnipedii, Mycobacteriaceae

AF456240, Mycobacterium marinum, Mycobacteriaceae

AB548725, Mycobacterium ulcerans, Mycobacteriaceae

AY570988, Mycobacterium pseudoshottsii, Mycobacteriaceae

AY005147, Mycobacterium shottsii, Mycobacteriaceae

AB268503, Mycobacterium shinjukuense, Mycobacteriaceae

AF406783, Mycobacterium lacus, Mycobacteriaceae

AF480602, Mycobacterium gastri, Mycobacteriaceae

AJ536035, Mycobacterium kansasii, Mycobacteriaceae

X67847, Mycobacterium intermedium, Mycobacteriaceae

AJ012756, Mycobacterium botniense, Mycobacteriaceae

AJ536033, Mycobacterium xenopi, Mycobacteriaceae

AF174290, Mycobacterium heckeshornense, Mycobacteriaceae

EU239955, Mycobacterium noviomagense, Mycobacteriaceae

AJ005005, Mycobacterium shimoidei, Mycobacteriaceae

EU274642, Mycobacterium riyadhense, Mycobacteriaceae

X52926, Mycobacterium szulgai, Mycobacteriaceae

X88922, Mycobacterium conspicuum, Mycobacteriaceae

X88922, Mycobacterium conspicuum, Mycobacteriaceae

AJ616230, Mycobacterium florentinum, Mycobacteriaceae

AM884331, Mycobacterium stomatepiae, Mycobacteriaceae

AF330038, Mycobacterium montefiorense, Mycobacteriaceae

X60070, Mycobacterium genavense, Mycobacteriaceae

U57632, Mycobacterium triplex, Mycobacteriaceae

AF466821, Mycobacterium parmense, Mycobacteriaceae

AJ000684, Mycobacterium heidelbergense, Mycobacteriaceae

AF480583, Mycobacterium lentiflavum, Mycobacteriaceae

X52931, Mycobacterium simiae, Mycobacteriaceae

AY353699, Mycobacterium sherrisii, Mycobacteriaceae

HM022196, Mycobacterium europaeum, Mycobacteriaceae

AY337273, Mycobacterium parascrofulaceum, Mycobacteriaceae

AF133902, Mycobacterium kubicae, Mycobacteriaceae

AJ308603, Mycobacterium palustre, Mycobacteriaceae

HM037998, Mycobacterium interjectum, Mycobacteriaceae

AY208856, Mycobacterium saskatchewanense, Mycobacteriaceae

X52923, Mycobacterium gordonae, Mycobacteriaceae

AF480595, Mycobacterium asiaticum, Mycobacteriaceae

AF480574, Mycobacterium branderi, Mycobacteriaceae

AB370111, Mycobacterium kyorinense, Mycobacteriaceae

L08169, Mycobacterium celatum, Mycobacteriaceae

X53896, Mycobacterium cookii, Mycobacteriaceae

DQ157760, Mycobacterium arupense, Mycobacteriaceae

X52928, Mycobacterium nonchromogenicum, Mycobacteriaceae

X67096, Mycobacterium hiberniae, Mycobacteriaceae

DQ536408, Mycobacterium senuense, Mycobacteriaceae

AB239925, Mycobacterium kumamotonense, Mycobacteriaceae

GU564404, Mycobacterium algericum, Mycobacteriaceae

M29568, Mycobacterium terrae, Mycobacteriaceae

X55603, Mycobacterium chitae, Mycobacteriaceae

AF480600, Mycobacterium fallax, Mycobacteriaceae

JF271826, Mycobacterium koreense, Mycobacteriaceae

DQ058405, Mycobacterium triviale, Mycobacteriaceae

AF480576, Mycobacterium brumae, Mycobacteriaceae

AJ010747, Mycobacterium elephantis, Mycobacteriaceae

AJ310467, Mycobacterium holsaticum, Mycobacteriaceae

AJ429046, Mycobacterium pulveris, Mycobacteriaceae

AJ634379, Mycobacterium confluentis, Mycobacteriaceae

AB537170, Mycobacterium madagascariense, Mycobacteriaceae

U49401, Mycobacterium hassiacum, Mycobacteriaceae

X55602, Mycobacterium thermoresistibile, Mycobacteriaceae

AJ429044, Mycobacterium moriokaense, Mycobacteriaceae

AB537171, Mycobacterium murale, Mycobacteriaceae

AF480590, Mycobacterium tokaiense, Mycobacteriaceae

X55594, Mycobacterium gadium, Mycobacteriaceae

Y12872, Mycobacterium goodii, Mycobacteriaceae

AJ131761, Mycobacterium smegmatis, Mycobacteriaceae

AJ699399, Mycobacterium mageritense, Mycobacteriaceae

AY457083, Mycobacterium wolinskyi, Mycobacteriaceae

U94745, Mycobacterium duvalii, Mycobacteriaceae

AJ429045, Mycobacterium agri, Mycobacteriaceae

X52932, Mycobacterium flavescens, Mycobacteriaceae

DQ370011, Mycobacterium rutilum, Mycobacteriaceae

X55595, Mycobacterium aurum, Mycobacteriaceae

AJ431371, Mycobacterium pyrenivorans, Mycobacteriaceae

X93182, Mycobacterium austroafricanum, Mycobacteriaceae

X84977, Mycobacterium vanbaalenii, Mycobacteriaceae

AF480591, Mycobacterium vaccae, Mycobacteriaceae

AF264700, Mycobacterium doricum, Mycobacteriaceae

AF107039, Mycobacterium monacense, Mycobacteriaceae

GU997640, Mycobacterium litorale, Mycobacteriaceae

U96747, Mycobacterium novocastrense, Mycobacteriaceae

AF058299, Mycobacterium tusciae, Mycobacteriaceae

AF480597, Mycobacterium chubuense, Mycobacteriaceae

AY943385, Mycobacterium rufum, Mycobacteriaceae

X79292, Mycobacterium chlorophenolicum, Mycobacteriaceae

AF480589, Mycobacterium poriferae, Mycobacteriaceae

AJ534886, Mycobacterium psychrotolerans, Mycobacteriaceae

X55597, Mycobacterium obuense, Mycobacteriaceae

X93183, Mycobacterium parafortuitum, Mycobacteriaceae

X81996, Mycobacterium gilvum, Mycobacteriaceae

X55598, Mycobacterium aichiense, Mycobacteriaceae

AY943386, Mycobacterium aromaticivorans, Mycobacteriaceae

AJ429047, Mycobacterium rhodesiae, Mycobacteriaceae

AF023664, Mycobacterium alvei, Mycobacteriaceae

AY457069, Mycobacterium peregrinum, Mycobacteriaceae

AY457070, Mycobacterium septicum, Mycobacteriaceae

AY457077, Mycobacterium porcinum, Mycobacteriaceae

AY457068, Mycobacterium neworleansense, Mycobacteriaceae

AY859684, Mycobacterium conceptionense, Mycobacteriaceae

X55591, Mycobacterium komossense, Mycobacteriaceae

AY012573, Mycobacterium boenickei, Mycobacteriaceae

FR733720, Mycobacterium fortuitum subsp. acetamidolyticum, Mycobacteriaceae

AY457066, Mycobacterium fortuitum subsp. fortuitum, Mycobacteriaceae

EF138818, Mycobacterium setense, Mycobacteriaceae

AY457067, Mycobacterium houstonense, Mycobacteriaceae

AY457081, Mycobacterium senegalense, Mycobacteriaceae

AY457084, Mycobacterium farcinogenes, Mycobacteriaceae

AJ617741, Mycobacterium fluoranthenivorans, Mycobacteriaceae

AJ276274, Mycobacterium frederiksbergense, Mycobacteriaceae

AF480599, Mycobacterium diernhoferi, Mycobacteriaceae

X93184, Mycobacterium hodleri, Mycobacteriaceae

AY012577, Mycobacterium brisbanense, Mycobacteriaceae

AY255478, Mycobacterium canariasense, Mycobacteriaceae

AY449728, Mycobacterium cosmeticum, Mycobacteriaceae

AF480593, Mycobacterium neoaurum, Mycobacteriaceae

AY457071, Mycobacterium abscessus subsp. abscessus, Mycobacteriaceae

AY859681, Mycobacterium abscessus subsp. bolletii, Mycobacteriaceae

AY457072, Mycobacterium chelonae, Mycobacteriaceae

DQ866768, Mycobacterium salmoniphilum, Mycobacteriaceae

AY859683, Mycobacterium aubagnense, Mycobacteriaceae

AJ746070, Mycobacterium llatzerense, Mycobacteriaceae

AY457074, Mycobacterium mucogenicum, Mycobacteriaceae

AY859682, Mycobacterium phocaicum, Mycobacteriaceae

DQ534008, Mycobacterium crocinum, Mycobacteriaceae

DQ370008, Mycobacterium pallens, Mycobacteriaceae

EU605695, Mycobacterium insubricum, Mycobacteriaceae

AF480603, Mycobacterium phlei, Mycobacteriaceae

FR733719, Mycobacterium sphagni, Mycobacteriaceae

EF564379, Amycolicicoccus subflavus , Mycobacteriaceae

FJ179485, Hoyosella altamirensis, type sp., Unclassified suborder Corynebacterineae

AB491283, Tomitella biformata, type sp., Unclassified suborder Corynebacterineae

Tsukamurellaceae (11)

Tsukamurellaceae (11)

AY238513, Tsukamurella pseudospumae, Tsukamurellaceae

AF150494, Tsukamurella sunchonensis, Tsukamurellaceae

X92981, Tsukamurella pulmonis, Tsukamurellaceae

AY714239, Tsukamurella spongiae, Tsukamurellaceae

EU521689, Tsukamurella carboxydivorans, Tsukamurellaceae

AY238514, Tsukamurella tyrosinosolvens, Tsukamurellaceae

AF283283, Tsukamurella strandjordii, Tsukamurellaceae

Z37150, Tsukamurella spumae, Tsukamurellaceae

AF283281, Tsukamurella inchonensis, Tsukamurellaceae

AF283280, Tsukamurella paurometabola, type sp., Tsukamurellaceae

FJ917743, Tsukamurella soli, Tsukamurellaceae

Corynebacteriaceae (88)

X96497, Corynebacterium coyleae, Corynebacteriaceae

FN295567, Corynebacterium pilbarense, Corynebacteriaceae

AM397636, Corynebacterium ureicelerivorans, Corynebacteriaceae

X82055, Corynebacterium afermentans subsp. lipophilum, Corynebacteriaceae

X82054, Corynebacterium afermentans subsp. afermentans, Corynebacteriaceae

Y11200, Corynebacterium mucifaciens, Corynebacteriaceae

X86688, Corynebacterium glucuronolyticum, Corynebacteriaceae

FJ185225, Corynebacterium pyruviciproducens, Corynebacteriaceae

X84252, Corynebacterium cystitidis, Corynebacteriaceae

AJ297402, Corynebacterium capitovis, Corynebacteriaceae

X84241, Corynebacterium mycetoides, Corynebacteriaceae

Y09045, Corynebacterium lipophiloflavum, Corynebacteriaceae

X81873, Corynebacterium auris, Corynebacteriaceae

EF217055, Corynebacterium timonense, Corynebacteriaceae

Y09655, Corynebacterium sundsvallense, Corynebacteriaceae

AF010474, Corynebacterium thomssenii, Corynebacteriaceae

Y09044, Corynebacterium imitans, Corynebacteriaceae

Y14651, Corynebacterium riegelii, Corynebacteriaceae

AJ431634, Corynebacterium glaucum, Corynebacteriaceae

AJ314919, Corynebacterium appendicis, Corynebacteriaceae

AY677186, Corynebacterium tuscaniense, Corynebacteriaceae

Y09569, Corynebacterium camporealensis, Corynebacteriaceae

AJ555193, Corynebacterium ciconiae, Corynebacteriaceae

EF217056, Corynebacterium massiliense, Corynebacteriaceae

AJ438050, Corynebacterium tuberculostearicum, Corynebacteriaceae

AJ439346, Corynebacterium accolens, Corynebacteriaceae

AJ439345, Corynebacterium macginleyi, Corynebacteriaceae

X84438, Corynebacterium propinquum, Corynebacteriaceae

AJ439343, Corynebacterium pseudodiphtheriticum, Corynebacteriaceae

Y15886, Corynebacterium confusum, Corynebacteriaceae

X84678, Corynebacterium minutissimum, Corynebacteriaceae

Y10999, Corynebacterium singulare, Corynebacteriaceae

AJ309207, Corynebacterium aurimucosum, Corynebacteriaceae

AJ012837, Corynebacterium simulans, Corynebacteriaceae

X84442, Corynebacterium striatum, Corynebacteriaceae

AF267152, Corynebacterium casei, Corynebacteriaceae

FJ172667, Corynebacterium stationis, Corynebacteriaceae

X84440, Corynebacterium ammoniagenes, Corynebacteriaceae

Y10076, Corynebacterium phocae, Corynebacteriaceae

X84441, Corynebacterium flavescens, Corynebacteriaceae

AJ441057, Corynebacterium atypicum, Corynebacteriaceae

X73976, Turicella otitidis, type sp., Corynebacteriaceae

Z97069, Corynebacterium durum, Corynebacteriaceae

Y09806, Corynebacterium mastitidis, Corynebacteriaceae

AJ566641, Corynebacterium caspium, Corynebacteriaceae

X81909, Corynebacterium renale, Corynebacteriaceae

FJ157329, Corynebacterium freiburgense, Corynebacteriaceae

GQ871934, Corynebacterium canis, Corynebacteriaceae

AJ429234, Corynebacterium spheniscorum, Corynebacteriaceae

EU998655, Corynebacterium doosanense, Corynebacteriaceae

AY226509, Corynebacterium halotolerans, Corynebacteriaceae

FJ423600, Corynebacterium maris, Corynebacteriaceae

FM173119, Corynebacterium lubricantis, Corynebacteriaceae

X81908, Corynebacterium pilosum, Corynebacteriaceae

X81916, Corynebacterium pseudotuberculosis, Corynebacteriaceae

X84256, Corynebacterium ulcerans, Corynebacteriaceae

X81871, Corynebacterium kutscheri, Corynebacteriaceae

X82065, Corynebacterium matruchotii, Corynebacteriaceae

FJ374773, Corynebacterium mustelae, Corynebacteriaceae

X84248, Corynebacterium diphtheriae, type sp., Corynebacteriaceae

AJ401282, Corynebacterium felinum, Corynebacteriaceae

AJ295841, Corynebacterium testudinoris, Corynebacteriaceae

AJ496733, Corynebacterium aquilae, Corynebacteriaceae

X83955, Corynebacterium argentoratense, Corynebacteriaceae

DQ219354, Corynebacterium marinum, Corynebacteriaceae

GQ421281, Corynebacterium humireducens, Corynebacteriaceae

AF314192, Corynebacterium glutamicum, Corynebacteriaceae

HQ612241, Corynebacterium deserti, Corynebacteriaceae

X84251, Corynebacterium callunae, Corynebacteriaceae

AB055963, Corynebacterium efficiens, Corynebacteriaceae

AJ243819, Corynebacterium auriscanis, Corynebacteriaceae

AB128981, Corynebacterium resistens, Corynebacteriaceae

AJ504424, Corynebacterium suicordis, Corynebacteriaceae

X84250, Corynebacterium jeikeium, Corynebacteriaceae

X81913, Corynebacterium urealyticum, Corynebacteriaceae

Y13024, Corynebacterium falsenii, Corynebacteriaceae

X84444, Corynebacterium bovis, Corynebacteriaceae

HM165487, Corynebacterium nuruki, Corynebacteriaceae

AJ222815, Corynebacterium variabile, Corynebacteriaceae

AB004730, Corynebacterium terpenotabidum, Corynebacteriaceae

Y10077, Corynebacterium kroppenstedtii, Corynebacteriaceae

AJ292762, Corynebacterium freneyi, Corynebacteriaceae

X81914, Corynebacterium xerosis, Corynebacteriaceae

AM946639, Corynebacterium hansenii, Corynebacteriaceae

X82057, Corynebacterium amycolatum, Corynebacteriaceae

AM930556, Corynebacterium sputi, Corynebacteriaceae

AJ440964, Corynebacterium sphenisci, Corynebacteriaceae

AM922112, Corynebacterium ulceribovis, Corynebacteriaceae

Dietziaceae (13)

EU375846, Dietzia cercidiphylli, Dietziaceae

X92157, Dietzia natronolimnaea, Dietziaceae

AB049630, Dietzia psychralcaliphila, Dietziaceae

EU821598, Dietzia lutea, Dietziaceae

X79290, Dietzia maris, type sp., Dietziaceae

EU375845, Dietzia schimae, Dietziaceae

AY972480, Dietzia kunjamensis, Dietziaceae

GQ368824, Dietzia alimentaria, Dietziaceae

FR821260, Dietzia aurantiaca, Dietziaceae

FM995533, Dietzia aerolata, Dietziaceae

FM995533, Dietzia aerolata, Dietziaceae

AJ920289, Dietzia cinnamea, Dietziaceae

AY643401, Dietzia papillomatosis, Dietziaceae

AB377289, Dietzia timorensis, Dietziaceae

Nocardiaceae 2 (41)

X80635, Gordonia amarae, Nocardiaceae

AB162799, Gordonia effusa, Nocardiaceae

X87340, Gordonia hydrophobica, Nocardiaceae

AM406674, Gordonia malaquae, Nocardiaceae

FN561544, Gordonia humi, Nocardiaceae

FJ938167, Gordonia neofelifaecis, Nocardiaceae

EU244645, Gordonia cholesterolivorans, Nocardiaceae

AJ416151, Gordonia sihwensis, Nocardiaceae

X93485, Gordonia hirsuta, Nocardiaceae

DQ420167, Gordonia shandongensis, Nocardiaceae

AF101418, Gordonia amicalis, Nocardiaceae

AF101416, Gordonia desulfuricans, Nocardiaceae

AF432348, Gordonia paraffinivorans, Nocardiaceae

AY995557, Gordonia rubripertincta, Nocardiaceae

Y18054, Gordonia alkanivorans, Nocardiaceae

AJ312907, Gordonia westfalica, Nocardiaceae

AF380930, Gordonia namibiensis, Nocardiaceae

EF151959, Gordonia lacunae, Nocardiaceae

X79286, Gordonia terrae, Nocardiaceae

AB162800, Gordonia araii, Nocardiaceae

AY650265, Gordonia defluvii, Nocardiaceae

AM883151, Gordonia kroppenstedtii, Nocardiaceae

AB122026, Gordonia otitidis, Nocardiaceae

X80634, Gordonia sputi, Nocardiaceae

X80633, Gordonia aichiensis, Nocardiaceae

AB004729, Gordonia rhizosphera, Nocardiaceae

X79287, Gordonia bronchialis, type sp., Nocardiaceae

AF380834, Gordonia sinesedis, Nocardiaceae

AY894336, Williamsia marianensis, Nocardiaceae

Y17384, Williamsia muralis, type sp., Nocardiaceae

HQ157192, Williamsia limnetica, Nocardiaceae

DQ157929, Williamsia faeni, Nocardiaceae

AB010909, Williamsia maris, Nocardiaceae

FR691321, Williamsia phyllosphaerae, Nocardiaceae

AJ920290, Williamsia deligens, Nocardiaceae

AM283464, Williamsia serinedens, Nocardiaceae

FJ572038, Gordonia hankookensis, Nocardiaceae

AY995560, Gordonia soli, Nocardiaceae

Y18310, Gordonia polyisoprenivorans, Nocardiaceae

AY534742, Millisia brevis, type sp., Nocardiaceae

Z35435, Skermania piniformis, type sp., Nocardiaceae

AY233201, Rhodococcus gordoniae, Nocardiaceae

AF173005, Rhodococcus pyridinivorans, Nocardiaceae

GU367155, Rhodococcus artemisiae, Nocardiaceae

X79288, Rhodococcus rhodochrous, type sp., Nocardiaceae

U93340, Rhodococcus coprophilus, Nocardiaceae

AF447391, Rhodococcus aetherivorans, Nocardiaceae

X80625, Rhodococcus ruber, Nocardiaceae

AF191343, Rhodococcus zopfii, Nocardiaceae

AY533293, Rhodococcus phenolicus, Nocardiaceae

AF430066, Rhodococcus corynebacterioides, Nocardiaceae

AY726605, Rhodococcus kroppenstedtii, Nocardiaceae

AY525785, Rhodococcus imtechensis, Nocardiaceae

AF124342, Rhodococcus koreensis, Nocardiaceae

Z37138, Rhodococcus wratislaviensis, Nocardiaceae

X80630, Rhodococcus opacus, Nocardiaceae

X92114, Rhodococcus percolatus, Nocardiaceae

X80617, Rhodococcus marinonascens, Nocardiaceae

AB046357, Rhodococcus jostii, Nocardiaceae

AF416566, Rhodococcus maanshanensis, Nocardiaceae

AB067734, Rhodococcus tukisamuensis, Nocardiaceae

DQ090961, Rhodococcus qingshengii, Nocardiaceae

DQ185597, Rhodococcus jialingiae, Nocardiaceae

AB071951, Rhodococcus baikonurensis, Nocardiaceae

FR733721, Nocardia coeliaca, Nocardiaceae

X79289, Rhodococcus erythropolis, Nocardiaceae

FR749915, Nocardia globerula, Nocardiaceae

X80619, Rhodococcus globerulus, Nocardiaceae

AB269261, Rhodococcus kyotonensis, Nocardiaceae

AY602219, Rhodococcus yunnanensis, Nocardiaceae

X79186, Rhodococcus fascians, Nocardiaceae

X80621, Rhodococcus rhodnii, Nocardiaceae

AJ854055, Rhodococcus triatomae, Nocardiaceae

Nocardiaceae 1 (87)

AB126880, Nocardia concava, Nocardiaceae

AF430039, Nocardia seriolae, Nocardiaceae

AF430067, Nocardia otitidiscaviarum, Nocardiaceae

AF430044, Nocardia uniformis, Nocardiaceae

AB092560, Nocardia inohanensis, Nocardiaceae

AB092561, Nocardia yamanashiensis, Nocardiaceae

DQ659910, Nocardia niigatensis, Nocardiaceae

AM402972, Nocardia acidivorans, Nocardiaceae

AF430049, Nocardia crassostreae, Nocardiaceae

AF430028, Nocardia nova, Nocardiaceae

FR733723, Nocardia mexicana, Nocardiaceae

HQ157184, Nocardia thraciensis, Nocardiaceae

GU367157, Nocardia artemisiae, Nocardiaceae

AB201298, Nocardia terpenica, Nocardiaceae

AF430042, Nocardia pseudobrasiliensis, Nocardiaceae

AY639902, Nocardia jiangxiensis, Nocardiaceae

AY639901, Nocardia miyunensis, Nocardiaceae

AY779043, Nocardia lijiangensis, Nocardiaceae

AY626158, Nocardia polyresistens, Nocardiaceae

AY333115, Nocardia xishanensis, Nocardiaceae

AB158277, Nocardia takedensis, Nocardiaceae

AB187522, Nocardia exalbida, Nocardiaceae

DQ235272, Nocardia gamkensis, Nocardiaceae

EU006090, Nocardia altamirensis, Nocardiaceae

AF430038, Nocardia brasiliensis, Nocardiaceae

DQ925490, Nocardia iowensis, Nocardiaceae

AJ556157, Nocardia tenerifensis, Nocardiaceae

AF430052, Nocardia cummidelens, Nocardiaceae

AF430051, Nocardia soli, Nocardiaceae

AF277204, Nocardia fluminea, Nocardiaceae

AF430050, Nocardia salmonicida, Nocardiaceae

DQ235688, Nocardia coubleae, Nocardiaceae

AJ303008, Nocardia ignorata, Nocardiaceae

AJ303008, Nocardia ignorata, Nocardiaceae

AY964666, Nocardia jejuensis, Nocardiaceae

DQ235687, Nocardia ninae, Nocardiaceae

AY222321, Nocardia alba, Nocardiaceae

AF430046, Nocardia pseudovaccinii, Nocardiaceae

AB024312, Nocardia vinacea, Nocardiaceae

AB162801, Nocardia anaemiae, Nocardiaceae

AF459443, Nocardia caishijiensis, Nocardiaceae

HQ157183, Nocardia goodfellowii, Nocardiaceae

AY282603, Nocardia neocaledoniensis, Nocardiaceae

AF430019, Nocardia asteroides, type sp., Nocardiaceae

AF430035, Nocardia carnea, Nocardiaceae

EF418604, Nocardia rhamnosiphila, Nocardiaceae

AB121770, Nocardia sienata, Nocardiaceae

AB192415, Nocardia testacea, Nocardiaceae

AF219974, Nocardia pigrifrangens, Nocardiaceae

Z46754, Nocardia flavorosea, Nocardiaceae

DQ462650, Nocardia jinanensis, Nocardiaceae

AM422449, Nocardia speluncae, Nocardiaceae

FR729900, Nocardia grenadensis, Nocardiaceae

FJ805428, Nocardia callitridis, Nocardiaceae

HM153801, Nocardia endophytica, Nocardiaceae

DQ282122, Nocardia harenae, Nocardiaceae

AF430040, Nocardia brevicatena, Nocardiaceae

AF430041, Nocardia paucivorans, Nocardiaceae

AF430027, Nocardia cyriacigeorgica, Nocardiaceae

AF218292, Nocardia abscessus, Nocardiaceae

AB126876, Nocardia aobensis, Nocardiaceae

AF060790, Nocardia cerradoensis, Nocardiaceae

EU484388, Nocardia mikamii, Nocardiaceae

AY441974, Nocardia kruczakiae, Nocardiaceae

AF430055, Nocardia veterana, Nocardiaceae

AF430054, Nocardia africana, Nocardiaceae

AJ854057, Nocardia elegans, Nocardiaceae

AB126873, Nocardia vermiculata, Nocardiaceae

AF430045, Nocardia vaccinii, Nocardiaceae

AB126874, Nocardia thailandica, Nocardiaceae

AB108775, Nocardia shimofusensis, Nocardiaceae

AB108778, Nocardia higoensis, Nocardiaceae

AJ508748, Nocardia puris, Nocardiaceae

AB108779, Nocardia araoensis, Nocardiaceae

FJ765056, Nocardia niwae, Nocardiaceae

AB108781, Nocardia arthritidis, Nocardiaceae

AB275164, Nocardia amamiensis, Nocardiaceae

AB108780, Nocardia pneumoniae, Nocardiaceae

AB184754, Streptomyces gardneri, Streptomycetaceae

AF154129, Nocardia beijingensis, Nocardiaceae

AB092566, Nocardia asiatica, Nocardiaceae

EU099360, Nocardia blacklockiae, Nocardiaceae

AF430047, Nocardia transvalensis, Nocardiaceae

EU099357, Nocardia wallacei, Nocardiaceae

Z36936, Nocardia farcinica, Nocardiaceae

DQ997045, Rhodococcus kunmingensis, Nocardiaceae

AF490539, Rhodococcus equi, Nocardiaceae

AB243007, Smaragdicoccus niigatensis, type sp., Nocardiaceae

Segniliparaceae (2)

AY608918, Segniliparus rotundus, type sp., Segniliparaceae

AY608920, Segniliparus rugosus, Segniliparaceae

Pseudonocardiaceae (218)

AY957506, Amycolatopsis benzoatilytica, Pseudonocardiaceae

AB248537, Amycolatopsis niigatensis, Pseudonocardiaceae

AB248535, Amycolatopsis echigonensis, Pseudonocardiaceae

AJ252832, Amycolatopsis albidoflavus, Pseudonocardiaceae

DQ000196, Amycolatopsis halotolerans, Pseudonocardiaceae

HQ021204, Amycolatopsis equina, Pseudonocardiaceae

HQ021203, Amycolatopsis hippodromi, Pseudonocardiaceae

HQ021202, Amycolatopsis circi, Pseudonocardiaceae

AF222022, Amycolatopsis rubida, Pseudonocardiaceae

AJ508240, Amycolatopsis vancoresmycina, Pseudonocardiaceae

AJ293757, Amycolatopsis tolypomycina, Pseudonocardiaceae

AY262825, Amycolatopsis plumensis, Pseudonocardiaceae

AY183358, Amycolatopsis lexingtonensis, Pseudonocardiaceae

AY183356, Amycolatopsis pretoriensis, Pseudonocardiaceae

AY083603, Amycolatopsis rifamycinica, Pseudonocardiaceae

AY183357, Amycolatopsis kentuckyensis, Pseudonocardiaceae

AJ508239, Amycolatopsis balhimycina, Pseudonocardiaceae

AJ293754, Amycolatopsis mediterranei, Pseudonocardiaceae

AY129753, Amycolatopsis australiensis, Pseudonocardiaceae

AJ293753, Amycolatopsis coloradensis, Pseudonocardiaceae

AF051340, Amycolatopsis alba, Pseudonocardiaceae

FJ581021, Amycolatopsis thailandensis, Pseudonocardiaceae

AJ400711, Amycolatopsis orientalis, type sp., Pseudonocardiaceae

AY129760, Amycolatopsis regifaucium, Pseudonocardiaceae

AJ508238, Amycolatopsis keratiniphila subsp. nogabecina, Pseudonocardiaceae

AJ278496, Amycolatopsis keratiniphila subsp. keratiniphila, Pseudonocardiaceae

AJ508237, Amycolatopsis decaplanina, Pseudonocardiaceae

AJ508236, Amycolatopsis japonica, Pseudonocardiaceae

AJ293755, Amycolatopsis lurida, Pseudonocardiaceae

AJ400709, Amycolatopsis azurea, Pseudonocardiaceae

DQ076482, Amycolatopsis minnesotensis, Pseudonocardiaceae

DQ486888, Amycolatopsis nigrescens, Pseudonocardiaceae

GQ381310, Amycolatopsis samaneae, Pseudonocardiaceae

DQ792500, Amycolatopsis saalfeldensis, Pseudonocardiaceae

FJ529702, Amycolatopsis xylanica, Pseudonocardiaceae

DQ000200, Amycolatopsis jejuensis, Pseudonocardiaceae

AJ293756, Amycolatopsis sulphurea, Pseudonocardiaceae

FM177516, Amycolatopsis ultiminotia, Pseudonocardiaceae

EU329845, Amycolatopsis marina, Pseudonocardiaceae

AF479268, Amycolatopsis palatopharyngis, Pseudonocardiaceae

FJ606836, Amycolatopsis halophila, Pseudonocardiaceae

HQ436534, Amycolatopsis salitolerans, Pseudonocardiaceae

AF223354, Amycolatopsis sacchari, Pseudonocardiaceae

AB588632, Micropolyspora internatus, Nocardiaceae

Z38007, Saccharomonospora viridis, type sp., Pseudonocardiaceae

Z38003, Saccharomonospora glauca, Pseudonocardiaceae

Z38018, Saccharomonospora cyanea, Pseudonocardiaceae

AJ306300, Saccharomonospora xinjiangensis, Pseudonocardiaceae

Z38017, Saccharomonospora azurea, Pseudonocardiaceae

DQ367416, Saccharomonospora saliphila, Pseudonocardiaceae

FJ812357, Saccharomonospora marina, Pseudonocardiaceae

AJ278497, Saccharomonospora halophila, Pseudonocardiaceae

AF540959, Saccharomonospora paurometabolica, Pseudonocardiaceae

AF540959, Saccharomonospora paurometabolica, Pseudonocardiaceae

FJ444992, Prauserella salsuginis, Pseudonocardiaceae

FJ444995, Prauserella sediminis, Pseudonocardiaceae

FJ444993, Prauserella flava, Pseudonocardiaceae

AF435077, Prauserella alba, Pseudonocardiaceae

AF466190, Prauserella halophila, Pseudonocardiaceae

FJ444994, Prauserella aidingensis, Pseudonocardiaceae

AF051342, Prauserella rugosa, type sp., Pseudonocardiaceae

FJ444996, Prauserella marina, Pseudonocardiaceae

FM956091, Prauserella muralis, Pseudonocardiaceae

AJ000285, Amycolatopsis eurytherma, Pseudonocardiaceae

DQ886938, Amycolatopsis tucumanensis, Pseudonocardiaceae

AJ249135, Amycolatopsis methanolica, Pseudonocardiaceae

AF052390, Amycolatopsis thermoflava, Pseudonocardiaceae

HQ668524, Amycolatopsis ruanii, Pseudonocardiaceae

AY129774, Amycolatopsis thermophila, Pseudonocardiaceae

AF466095, Amycolatopsis viridis, Pseudonocardiaceae

AF466101, Amycolatopsis granulosa, Pseudonocardiaceae

HQ668525, Amycolatopsis thermalba, Pseudonocardiaceae

AB327253, Amycolatopsis helveola, Pseudonocardiaceae

DQ160215, Amycolatopsis taiwanensis, Pseudonocardiaceae

AB327254, Amycolatopsis pigmentata, Pseudonocardiaceae

X79183, Thermocrispum agreste, Pseudonocardiaceae

X79184, Thermocrispum municipale, type sp., Pseudonocardiaceae

GQ366705, Haloechinothrix alba, type sp., Pseudonocardiaceae

FJ526746, Yuhushiella deserti, type sp., Pseudonocardiaceae

EU503139, Sciscionella marina, type sp., Pseudonocardiaceae

EU267029, Saccharopolyspora hirsuta subsp. kobensis, Pseudonocardiaceae

EF143926, Saccharopolyspora jiangxiensis, Pseudonocardiaceae

EF693956, Saccharopolyspora antimicrobica, Pseudonocardiaceae

DQ381814, Saccharopolyspora hirsuta subsp. hirsuta, type sp., Pseudonocardiaceae

FN179275, Saccharopolyspora hordei, Pseudonocardiaceae

EF104116, Saccharopolyspora shandongensis, Pseudonocardiaceae

AF002818, Saccharopolyspora spinosa, Pseudonocardiaceae

AF127526, Saccharopolyspora thermophila, Pseudonocardiaceae

GQ381309, Saccharopolyspora phatthalungensis, Pseudonocardiaceae

AM992060, Saccharopolyspora rosea, Pseudonocardiaceae

AM420293, Saccharopolyspora erythraea, Pseudonocardiaceae

Y09571, Saccharopolyspora spinosporotrichia, Pseudonocardiaceae

AF002819, Saccharopolyspora taberi, Pseudonocardiaceae

EU005371, Saccharopolyspora gloriosae, Pseudonocardiaceae

X76962, Saccharopolyspora gregorii, Pseudonocardiaceae

Actinopolysporaceae (5)

GQ480940, Actinopolyspora alba, Actinopolysporaceae

GU479394, Actinopolyspora xinjiangensis, Actinopolysporaceae

GQ480939, Actinopolyspora erythraea, Actinopolysporaceae

DQ883812, Actinopolyspora mortivallis, Actinopolysporaceae

X54287, Actinopolyspora halophila, type sp., Actinopolysporaceae

JN010255, Saccharopolyspora rectivirgula, Pseudonocardiaceae

EF687715, Saccharopolyspora qijiaojingensis, Pseudonocardiaceae

AF154128, Saccharopolyspora flava, Pseudonocardiaceae

FJ214364, Saccharopolyspora tripterygii, Pseudonocardiaceae

DQ923129, Saccharopolyspora halophila, Pseudonocardiaceae

EF030715, Saccharopolyspora cebuensis, Pseudonocardiaceae

AB511316, Actinophytocola corallina, Pseudonocardiaceae

AB511315, Actinophytocola timorensis, Pseudonocardiaceae

AB535095, Actinophytocola burenkhanensis, Pseudonocardiaceae

EU420070, Actinophytocola oryzae, type sp., Pseudonocardiaceae

EU274339, Actinophytocola xinjiangensis, Pseudonocardiaceae

AB514520, Actinomycetospora cinnamomea, Pseudonocardiaceae

AB514519, Actinomycetospora chlora, Pseudonocardiaceae

AB514517, Actinomycetospora chibensis, Pseudonocardiaceae

AB514518, Actinomycetospora straminea, Pseudonocardiaceae

AB514514, Actinomycetospora succinea, Pseudonocardiaceae

AB514515, Actinomycetospora lutea, Pseudonocardiaceae

AM398646, Actinomycetospora chiangmaiensis, type sp., Pseudonocardiaceae

AB514513, Actinomycetospora corticicola, Pseudonocardiaceae

AB581530, Actinomycetospora rishiriensis, Pseudonocardiaceae

AB581531, Actinomycetospora iriomotensis, Pseudonocardiaceae

EU921261, Pseudonocardia acaciae, Pseudonocardiaceae

Y08536, Pseudonocardia asaccharolytica, Pseudonocardiaceae

AB514449, Pseudonocardia babensis, Pseudonocardiaceae

GU227146, Pseudonocardia artemisiae, Pseudonocardiaceae

EU722520, Pseudonocardia xinjiangensis, Pseudonocardiaceae

AJ252828, Pseudonocardia petroleophila, Pseudonocardiaceae

AJ252829, Pseudonocardia saturnea, Pseudonocardiaceae

FR733722, Pseudonocardia alaniniphila, Pseudonocardiaceae

AJ252822, Pseudonocardia yunnanensis, Pseudonocardiaceae

FR749916, Pseudonocardia aurantiaca, Pseudonocardiaceae

AB521672, Pseudonocardia khuvsgulensis, Pseudonocardiaceae

EF588218, Pseudonocardia thermophila, type sp., Pseudonocardiaceae

FJ805427, Pseudonocardia adelaidensis, Pseudonocardiaceae

AF325725, Pseudonocardia zijingensis, Pseudonocardiaceae

FJ817377, Pseudonocardia kunmingensis, Pseudonocardiaceae

AF454510, Pseudonocardia chloroethenivorans, Pseudonocardiaceae

AB521671, Pseudonocardia mongoliensis, Pseudonocardiaceae

DQ887489, Pseudonocardia endophytica, Pseudonocardiaceae

AJ252833, Pseudonocardia kongjuensis, Pseudonocardiaceae

AY500143, Pseudonocardia ammonioxydans, Pseudonocardiaceae

AJ252824, Pseudonocardia autotrophica, Pseudonocardiaceae

AJ252825, Pseudonocardia compacta, Pseudonocardiaceae

X55609, Pseudonocardia nitrificans, Pseudonocardiaceae

AJ252823, Pseudonocardia alni, Pseudonocardiaceae

EF114314, Pseudonocardia carboxydivorans, Pseudonocardiaceae

AJ576010, Pseudonocardia antarctica, Pseudonocardiaceae

GQ906587, Pseudonocardia tropica, Pseudonocardiaceae

FM863703, Pseudonocardia parietis, Pseudonocardiaceae

AB547126, Pseudonocardia spinosa, Pseudonocardiaceae

AJ249206, Pseudonocardia spinosispora, Pseudonocardiaceae

FJ805426, Pseudonocardia eucalypti, Pseudonocardiaceae

DQ344632, Pseudonocardia ailaonensis, Pseudonocardiaceae

DQ343154, Pseudonocardia oroxyli, Pseudonocardiaceae

AJ252827, Pseudonocardia halophobica, Pseudonocardiaceae

AJ556156, Pseudonocardia benzenivorans, Pseudonocardiaceae

AY340622, Pseudonocardia dioxanivorans, Pseudonocardiaceae

AJ249200, Pseudonocardia tetrahydrofuranoxydans, Pseudonocardiaceae

AJ252826, Pseudonocardia hydrocarbonoxydans, Pseudonocardiaceae

Y08537, Pseudonocardia sulfidoxydans, Pseudonocardiaceae

FM998036, Labedaea rhizosphaerae, type sp., Pseudonocardiaceae

AJ512463, Kibdelosporangium aridum subsp. largum, Pseudonocardiaceae

AJ512464, Kibdelosporangium philippinense, Pseudonocardiaceae

AJ311174, Kibdelosporangium aridum subsp. aridum, type sp., Pseudonocardiaceae

JN005785, Actinokineospora soli, Pseudonocardiaceae

D85497, Streptoalloteichus hindustanus, type sp., Pseudonocardiaceae

AB184722, Streptoalloteichus tenebrarius, Pseudonocardiaceae

X76966, Saccharothrix mutabilis subsp. mutabilis, Pseudonocardiaceae

X76965, Saccharothrix mutabilis subsp. capreolus, Pseudonocardiaceae

GQ917213, Saccharothrix variisporea, Pseudonocardiaceae

AF114807, Saccharothrix espanaensis, Pseudonocardiaceae

AF114814, Saccharothrix texasensis, Pseudonocardiaceae

AF114803, Saccharothrix australiensis, type sp., Pseudonocardiaceae

AB284261, Saccharothrix violaceirubra, Pseudonocardiaceae

AY054972, Saccharothrix algeriensis, Pseudonocardiaceae

AF114805, Saccharothrix coeruleofusca, Pseudonocardiaceae

AF114812, Saccharothrix syringae, Pseudonocardiaceae

AY135693, Saccharothrix xinjiangensis, Pseudonocardiaceae

AF114809, Saccharothrix longispora, Pseudonocardiaceae

AF328679, Actinosynnema mirum, type sp., Pseudonocardiaceae

AB303364, Actinosynnema pretiosum subsp. auranticum, Pseudonocardiaceae

AF114800, Actinosynnema pretiosum subsp. pretiosum, Pseudonocardiaceae

AF114804, Lechevalieria aerocolonigenes, type sp., Pseudonocardiaceae

DQ898283, Lechevalieria xinjiangensis, Pseudonocardiaceae

AJ512462, Allokutzneria albata, type sp., Pseudonocardiaceae

AF114808, Lechevalieria flava, Pseudonocardiaceae

AF328680, Lentzea albidocapillata, type sp., Pseudonocardiaceae

AJ242633, Lentzea violacea, Pseudonocardiaceae

AF183957, Lentzea flaviverrucosa, Pseudonocardiaceae

AB020029, Lentzea waywayandensis, Pseudonocardiaceae

AF174435, Lentzea californiensis, Pseudonocardiaceae

AB006176, Lentzea albida, Pseudonocardiaceae

DQ291145, Lentzea kentuckyensis, Pseudonocardiaceae

AY114175, Lechevalieria fradiae, Pseudonocardiaceae

EU551683, Lechevalieria roselyniae, Pseudonocardiaceae

EU551684, Lechevalieria atacamensis, Pseudonocardiaceae

AB447489, Actinokineospora cibodasensis, Pseudonocardiaceae

EU438907, Alloactinosynnema album, type sp., Pseudonocardiaceae

AF114797, Actinokineospora diospyrosa, Pseudonocardiaceae

AB473945, Actinokineospora cianjurensis, Pseudonocardiaceae

AB058396, Actinokineospora auranticolor, Pseudonocardiaceae

AB447488, Actinokineospora baliensis, Pseudonocardiaceae

AF114798, Actinokineospora globicatena, Pseudonocardiaceae

AB058394, Actinokineospora terrae, Pseudonocardiaceae

AB058395, Actinokineospora enzanensis, Pseudonocardiaceae

AF114799, Actinokineospora inagensis, Pseudonocardiaceae

AF114802, Actinokineospora riparia, type sp., Pseudonocardiaceae

GQ200601, Actinokineospora fastidiosa, Pseudonocardiaceae

AB020031, Umezawaea tangerina, type sp., Pseudonocardiaceae

EF543522, Kutzneria albida, Pseudonocardiaceae

AF114801, Kutzneria kofuensis, Pseudonocardiaceae

U58530, Kutzneria viridogrisea, type sp., Pseudonocardiaceae

AB006178, Actinoalloteichus cyanogriseus, type sp., Pseudonocardiaceae

AY426714, Actinoalloteichus spitiensis, Pseudonocardiaceae

DQ144222, Actinoalloteichus hymeniacidonis, Pseudonocardiaceae

GQ926935, Actinoalloteichus nanshanensis, Pseudonocardiaceae

DQ093349, Goodfellowiella coeruleoviolacea, type sp., Pseudonocardiaceae

AF114806, Crossiella cryophila, type sp., Pseudonocardiaceae

AF245017, Crossiella equi, Pseudonocardiaceae

Micromonosporaceae (136)

AB036996, Actinoplanes consettensis, Micromonosporaceae

AB037004, Actinoplanes humidus, Micromonosporaceae

FR733685, Actinoplanes friuliensis, Micromonosporaceae

AB037000, Actinoplanes digitatis, Micromonosporaceae

AJ277568, Actinoplanes durhamensis, Micromonosporaceae

X93188, Actinoplanes regularis, Micromonosporaceae

AJ277573, Actinoplanes palleronii, Micromonosporaceae

AB047494, Actinoplanes octamycinicus, Micromonosporaceae

AB047495, Actinoplanes ianthinogenes, Micromonosporaceae

AJ277574, Actinoplanes utahensis, Micromonosporaceae

U58526, Actinoplanes auranticolor, Micromonosporaceae

EU531458, Actinoplanes sichuanensis, Micromonosporaceae

AB037006, Actinoplanes lobatus, Micromonosporaceae

AB036995, Actinoplanes campanulatus, Micromonosporaceae

AB013495, Actinoplanes capillaceus, Micromonosporaceae

AB036997, Actinoplanes cyaneus, Micromonosporaceae

AJ865471, Actinoplanes liguriensis, Micromonosporaceae

AB037005, Actinoplanes italicus, Micromonosporaceae

AM400230, Actinoplanes couchii, Micromonosporaceae

AB037010, Actinoplanes rectilineatus, Micromonosporaceae

AB036999, Actinoplanes derwentensis, Micromonosporaceae

EU531457, Actinoplanes xinjiangensis, Micromonosporaceae

AJ277572, Actinoplanes missouriensis, Micromonosporaceae

U58525, Actinoplanes philippinensis, type sp., Micromonosporaceae

AB047513, Actinoplanes teichomyceticus, Micromonosporaceae

X92594, Micromonospora chalcea, type sp., Micromonosporaceae

AB196712, Micromonospora marina , Micromonosporaceae

X92604, Micromonospora aurantiaca, Micromonosporaceae

X92601, Micromonospora halophytica, Micromonosporaceae

X92611, Micromonospora purpureochromogenes, Micromonosporaceae

AB241455, Micromonospora coxensis, Micromonosporaceae

GU459068, Micromonospora humi, Micromonosporaceae

AB241454, Micromonospora chokoriensis, Micromonosporaceae

AJ783996, Micromonospora lupini, Micromonosporaceae

AJ626950, Micromonospora mirobrigensis, Micromonosporaceae

AB193565, Micromonospora siamensis, Micromonosporaceae

AY561829, Micromonospora rifamycinica, Micromonosporaceae

AF152109, Micromonospora matsumotoense, Micromonosporaceae

AJ783993, Micromonospora saelicesensis, Micromonosporaceae

AB196716, Micromonospora krabiensis, Micromonosporaceae

X92599, Micromonospora carbonacea, Micromonosporaceae

AM232832, Planosporangium flavigriseum, type sp., Micromonosporaceae

GU126491, Planosporangium mesophilum, Micromonosporaceae

X93185, Actinoplanes brasiliensis, Micromonosporaceae

HQ157185, Actinoplanes abujensis, Micromonosporaceae

AJ277569, Actinoplanes ferrugineus, Micromonosporaceae

AB468944, Actinoplanes tereljensis, Micromonosporaceae

AB468943, Actinoplanes toevensis, Micromonosporaceae

AB048219, Actinoplanes globisporus, Micromonosporaceae

AJ277565, Actinoplanes deccanensis, Micromonosporaceae

AB236956, Krasilnikovia cinnamomea, type sp., Micromonosporaceae

AB302183, Pseudosporangium ferrugineum, type sp., Micromonosporaceae

X93202, Couchioplanes caeruleus subsp. azureus, Micromonosporaceae

D85479, Couchioplanes caeruleus subsp. caeruleus, type sp., Micromonosporaceae

AB490769, Phytohabitans suffuscus, type sp., Micromonosporaceae

AB112081, Asanoa iriomotensis, Micromonosporaceae

AJ294715, Asanoa ishikariensis, Micromonosporaceae

AF152108, Asanoa ferruginea, type sp., Micromonosporaceae

AF152108, Asanoa ferruginea, type sp., Micromonosporaceae

FJ155992, Asanoa hainanensis, Micromonosporaceae

EU560726, Jishengella endophytica, type sp., Micromonosporaceae

AB588634, Catenuloplanes castaneus, Micromonosporaceae

X93201, Catenuloplanes japonicus, type sp., Micromonosporaceae

AJ294716, Catenuloplanes atrovinosus, Micromonosporaceae

AJ294717, Catenuloplanes indicus, Micromonosporaceae

AB588635, Catenuloplanes niger, Micromonosporaceae

AB024701, Catenuloplanes crispus, Micromonosporaceae

FJ715941, Catenuloplanes nepalensis, Micromonosporaceae

EF191199, Verrucosispora lutea, Micromonosporaceae

EU870859, Verrucosispora sediminis, Micromonosporaceae

Y15523, Verrucosispora gifhornensis, type sp., Micromonosporaceae

AY528866, Verrucosispora maris, Micromonosporaceae

AB200231, Catellatospora chokoriensis, Micromonosporaceae

AF152107, Catellatospora methionotrophica, Micromonosporaceae

AF152106, Catellatospora citrea, type sp., Micromonosporaceae

AB200232, Catellatospora coxensis, Micromonosporaceae

AF171700, Catelliglobosispora koreensis, Micromonosporaceae

FN386736, Allocatelliglobosispora scoriae, type sp., Micromonosporaceae

AB200233, Catellatospora bangladeshensis, Micromonosporaceae

AF152110, Hamadaea tsunoensis, Micromonosporaceae

AB089241, Longispora albida, type sp., Micromonosporaceae

AB489859, Longispora fulva, Micromonosporaceae

X92607, Micromonospora echinospora, Micromonosporaceae

X92620, Micromonospora fulviviridis, Micromonosporaceae

X92629, Micromonospora inyonensis, Micromonosporaceae

X92624, Micromonospora sagamiensis, Micromonosporaceae

X92610, Micromonospora inositola, Micromonosporaceae

X92618, Micromonospora echinaurantiaca, Micromonosporaceae

X92613, Micromonospora olivasterospora, Micromonosporaceae

X92623, Micromonospora viridifaciens, Micromonosporaceae

X92608, Micromonospora pallida, Micromonosporaceae

X92609, Micromonospora nigra, Micromonosporaceae

X92598, Micromonospora coerulea, Micromonosporaceae

AJ784008, Micromonospora coriariae, Micromonosporaceae

X92625, Micromonospora echinofusca, Micromonosporaceae

X92603, Micromonospora peucetia, Micromonosporaceae

X92617, Micromonospora citrea, Micromonosporaceae

X92628, Micromonospora chersina, Micromonosporaceae

AJ560635, Micromonospora endolithica, Micromonosporaceae

AB159779, Micromonospora auratinigra, Micromonosporaceae

X92631, Micromonospora rosaria, Micromonosporaceae

EU196562, Micromonospora tulbaghiae, Micromonosporaceae

FJ261956, Micromonospora rhizosphaerae, Micromonosporaceae

AB196710, Micromonospora chaiyaphumensis, Micromonosporaceae

GU002071, Micromonospora yangpuensis, Micromonosporaceae

AB107231, Micromonospora eburnea, Micromonosporaceae

AB193559, Micromonospora narathiwatensis, Micromonosporaceae

AB275607, Micromonospora pattaloongensis, Micromonosporaceae

AM944497, Micromonospora pisi, Micromonosporaceae

AY040619, Salinispora arenicola, type sp., Micromonosporaceae

AY040617, Salinispora tropica, Micromonosporaceae

AB454379, Actinaurispora siamensis, type sp., Micromonosporaceae

AB223089, Polymorphospora rubra, type sp., Micromonosporaceae

FJ214343, Plantactinospora mayteni, type sp., Micromonosporaceae

D63912, Spirilliplanes yamanashiensis, type sp., Micromonosporaceae

X93192, Dactylosporangium fulvum, Micromonosporaceae

X93194, Dactylosporangium roseum, Micromonosporaceae

X92630, Dactylosporangium thailandense, Micromonosporaceae

FM882231, Dactylosporangium darangshiense, Micromonosporaceae

FJ973605, Dactylosporangium luridum, Micromonosporaceae

FJ973604, Dactylosporangium luteum, Micromonosporaceae

X93191, Dactylosporangium aurantiacum, type sp., Micromonosporaceae

AB495209, Dactylosporangium maewongense, Micromonosporaceae

X93193, Dactylosporangium matsuzakiense, Micromonosporaceae

X93196, Dactylosporangium vinaceum, Micromonosporaceae

FJ973607, Dactylosporangium salmoneum, Micromonosporaceae

AB454508, Dactylosporangium tropicum, Micromonosporaceae

AB236959, Luedemannella flava, Micromonosporaceae

AB236957, Luedemannella helvata, type sp., Micromonosporaceae

FM208262, Rugosimonospora africana, Micromonosporaceae

FM208261, Rugosimonospora acidiphila, type sp., Micromonosporaceae

X93189, Pilimelia anulata, Micromonosporaceae

X93190, Pilimelia terevasa, type sp., Micromonosporaceae

AB548688, Pilimelia columellifera subsp. columellifera, Micromonosporaceae

AB006169, Virgisporangium aurantiacum, Micromonosporaceae

AB006167, Virgisporangium ochraceum, type sp., Micromonosporaceae

AB548616, Virgisporangium aliadipatigenens, Micromonosporaceae

Glycomycetaceae (13)

AY462041, Glycomyces lechevalierae, Glycomycetaceae

AJ293748, Glycomyces rutgersensis, Glycomycetaceae

AY462044, Glycomyces algeriensis, Glycomycetaceae

EU200681, Glycomyces endophyticus, Glycomycetaceae

D85483, Glycomyces harbinensis, type sp., Glycomycetaceae

DQ460469, Glycomyces sambucus, Glycomycetaceae

EU200682, Glycomyces scopariae, Glycomycetaceae

EU814511, Glycomyces mayteni, Glycomycetaceae

AY462042, Glycomyces arizonensis, Glycomycetaceae

D85482, Glycomyces tenuis, Glycomycetaceae

EU660053, Haloglycomyces albus, type sp., Glycomycetaceae

AY650268, Stackebrandtia nassauensis, type sp., Glycomycetaceae

DQ985165, Stackebrandtia albiflava, Glycomycetaceae

GU367156, Phytomonospora endophytica, type sp., Micromonosporaceae

AB107233, Actinocatenispora thailandica, type sp., Micromonosporaceae

AB263096, Actinocatenispora sera, Micromonosporaceae

AM980986, Actinocatenispora rupis, Micromonosporaceae

Jiangellaceae (5)

FN645214, Jiangella muralis, Jiangellaceae

FJ157186, Jiangella alba, Jiangellaceae

AM422451, Jiangella alkaliphila, Jiangellaceae

AY631071, Jiangella gansuensis, type sp., Jiangellaceae

FJ969846, Haloactinopolyspora alba, type sp., Jiangellaceae

Thermomonosporaceae (71)

AJ293701, Actinocorallia aurantiaca, Thermomonosporaceae

U49007, Actinocorallia libanotica, Thermomonosporaceae

D85473, Actinocorallia herbida, type sp., Thermomonosporaceae

AB006177, Actinocorallia aurea, Thermomonosporaceae

AJ293704, Actinocorallia glomerata, Thermomonosporaceae

AJ293707, Actinocorallia longicatena, Thermomonosporaceae

AY966427, Actinocorallia cavernae, Thermomonosporaceae

AY966427, Actinocorallia cavernae, Thermomonosporaceae

AF163123, Spirillospora rubra, Thermomonosporaceae

DQ285420, Actinomadura rudentiformis, Thermomonosporaceae

AJ420137, Actinomadura fulvescens, Thermomonosporaceae

D85498, Spirillospora albida, type sp., Thermomonosporaceae

AJ293702, Actinomadura fibrosa, Thermomonosporaceae

EU637009, Actinomadura keratinilytica, Thermomonosporaceae

EF116925, Actinomadura miaoliensis, Thermomonosporaceae

EU637008, Actinomadura rubrobrunea, Thermomonosporaceae

D86943, Actinomadura viridilutea, Thermomonosporaceae

AF163118, Actinomadura oligospora, Thermomonosporaceae

FM210337, Actinomadura rupiterrae, Thermomonosporaceae

X97890, Actinomadura kijaniata, Thermomonosporaceae

AJ420134, Actinomadura namibiensis, Thermomonosporaceae

AJ293705, Actinomadura hibisca, Thermomonosporaceae

AY035999, Actinomadura nitritigenes, Thermomonosporaceae

AJ293703, Actinomadura formosensis, Thermomonosporaceae

U49000, Actinomadura atramentaria, Thermomonosporaceae

FJ157185, Actinomadura flavalba, Thermomonosporaceae

AY568292, Actinomadura napierensis, Thermomonosporaceae

AY273787, Actinomadura meyerae, Thermomonosporaceae

HQ157187, Actinomadura geliboluensis, Thermomonosporaceae

U49008, Actinomadura luteofluorescens, Thermomonosporaceae

U49011, Actinomadura verrucosospora, Thermomonosporaceae

U49010, Actinomadura rugatobispora, Thermomonosporaceae

U49009, Actinomadura macra, Thermomonosporaceae

U49002, Actinomadura coerulea, Thermomonosporaceae

AJ293710, Actinomadura pelletieri, Thermomonosporaceae

FN646663, Actinomadura meridiana, Thermomonosporaceae

U49003, Actinomadura rifamycini, Thermomonosporaceae

AB557596, Actinomadura apis, Thermomonosporaceae

AF134067, Actinomadura cremea subsp. cremea, Thermomonosporaceae

JF272484, Actinomadura sediminis, Thermomonosporaceae

AB184612, Actinomadura glauciflava, Thermomonosporaceae

AJ420139, Actinomadura citrea, Thermomonosporaceae

AF277195, Actinomadura mexicana, Thermomonosporaceae

X97889, Actinomadura madurae, type sp., Thermomonosporaceae

AY035998, Actinomadura latina, Thermomonosporaceae

AB331652, Actinomadura bangladeshensis, Thermomonosporaceae

AB331730, Actinomadura chokoriensis, Thermomonosporaceae

AF134070, Actinomadura vinacea, Thermomonosporaceae

AJ420141, Actinomadura viridis, Thermomonosporaceae

AF163122, Actinomadura yumaensis, Thermomonosporaceae

AB264086, Actinomadura chibensis, Thermomonosporaceae

AF154127, Actinomadura catellatispora, Thermomonosporaceae

AJ293706, Actinomadura livida, Thermomonosporaceae

DQ076484, Actinomadura hallensis, Thermomonosporaceae

FM957483, Actinomadura sputi, Thermomonosporaceae

AJ293713, Actinomadura umbrina, Thermomonosporaceae

D86945, Thermomonospora curvata, type sp., Thermomonosporaceae

AJ420135, Actinomadura echinospora, Thermomonosporaceae

AB364579, Actinoallomurus coprocola, Thermomonosporaceae

EU420071, Actinoallomurus oryzae, Thermomonosporaceae

AB364586, Actinoallomurus iriomotensis, Thermomonosporaceae

AB578855, Actinoallomurus radicium, Thermomonosporaceae

EU429322, Actinoallomurus acaciae , Thermomonosporaceae

AB364589, Actinoallomurus caesius, Thermomonosporaceae

AB364583, Actinoallomurus amamiensis, Thermomonosporaceae

AB364582, Actinoallomurus fulvus, Thermomonosporaceae

AB364584, Actinoallomurus yoronensis, Thermomonosporaceae

AB364585, Actinoallomurus luridus, Thermomonosporaceae

AB364588, Actinoallomurus purpureus, Thermomonosporaceae

AF163120, Actinoallomurus spadix, type sp., Thermomonosporaceae

FM210339, Actinomadura scrupuli, Thermomonosporaceae

DQ985164, Actinomadura alba, Thermomonosporaceae

Nocardiopsaceae (50)

AY028325, Nocardiopsis exhalans, Nocardiopsaceae

AY336503, Nocardiopsis valliformis, Nocardiopsaceae

AY336513, Nocardiopsis ganjiahuensis, Nocardiopsaceae

AJ420769, Nocardiopsis metallicus, Nocardiopsaceae

X97884, Nocardiopsis prasina, Nocardiopsaceae

AY230848, Nocardiopsis alkaliphila, Nocardiopsaceae

X97887, Nocardiopsis listeri, Nocardiopsaceae

X97883, Nocardiopsis alba, Nocardiopsaceae

AF105971, Nocardiopsis tropica, Nocardiopsaceae

AY036001, Nocardiopsis umidischolae, Nocardiopsaceae

AJ539401, Nocardiopsis aegyptia, Nocardiopsaceae

X97886, Nocardiopsis dassonvillei subsp. dassonvillei, type sp., Nocardiopsaceae

Y13593, Nocardiopsis synnemataformans, Nocardiopsaceae

X97882, Nocardiopsis dassonvillei subsp. albirubida, Nocardiopsaceae

AJ290448, Nocardiopsis halotolerans, Nocardiopsaceae

EU410477, Nocardiopsis arvandica, Nocardiopsaceae

EU410476, Nocardiopsis sinuspersici, Nocardiopsaceae

EF597511, Nocardiopsis quinghaiensis, Nocardiopsaceae

X97888, Nocardiopsis lucentensis, Nocardiopsaceae

AF195412, Nocardiopsis kunsanensis, Nocardiopsaceae

EU583726, Nocardiopsis litoralis, Nocardiopsaceae

AF251709, Nocardiopsis xinjiangensis, Nocardiopsaceae

AY373031, Nocardiopsis salina, Nocardiopsaceae

AB491226, Nocardiopsis nikkonensis, Nocardiopsaceae

GU997639, Nocardiopsis flavescens, Nocardiopsaceae

AY619716, Nocardiopsis baichengensis, Nocardiopsaceae

AJ421018, Nocardiopsis halophila, Nocardiopsaceae

AY619715, Nocardiopsis chromatogenes, Nocardiopsaceae

AY619714, Nocardiopsis rhodophaea, Nocardiopsaceae

AY619713, Nocardiopsis rosea, Nocardiopsaceae

AY619712, Nocardiopsis gilva, Nocardiopsaceae

JN006759, Nocardiopsis coralliicola, Nocardiopsaceae

FM253114, Nocardiopsis potens, Nocardiopsaceae

AF360734, Nocardiopsis composta, Nocardiopsaceae

AF105972, Nocardiopsis trehalosi, Nocardiopsaceae

AF462347, Streptomonospora alba, Nocardiopsaceae

EU442553, Streptomonospora flavalba, Nocardiopsaceae

EU442551, Streptomonospora amylolytica, Nocardiopsaceae

AF178988, Streptomonospora salina, type sp., Nocardiopsaceae

EF095149, Nocardiopsis arabia, Nocardiopsaceae

EF423989, Streptomonospora halophila, Nocardiopsaceae

DQ923130, Haloactinospora alba, type sp., Nocardiopsaceae

GU253338, Salinactinospora qingdaonensis, type sp., Nocardiopsaceae

EU698029, Marinactinospora thermotolerans, type sp., Nocardiopsaceae

FN393755, Murinocardiopsis flavida, type sp., Nocardiopsaceae

GU112453, Spinactinospora alkalitolerans, type sp., Nocardiopsaceae

AJ298058, Thermobifida cellulosilytica, Nocardiopsaceae

AJ298058, Thermobifida cellulosilytica, Nocardiopsaceae

AF028245, Thermobifida fusca, Nocardiopsaceae

AF002260, Thermobifida alba, type sp., Nocardiopsaceae

EU250489, Thermobifida halotolerans, Nocardiopsaceae

Streptosporangiaceae (83)

AB039961, Nonomuraea roseoviolacea subsp. carminata, Streptosporangiaceae

AB039959, Nonomuraea roseoviolacea subsp. roseoviolacea, Streptosporangiaceae

GU002054, Nonomuraea maritima, Streptosporangiaceae

FJ418910, Nonomuraea jiangxiensis, Streptosporangiaceae

FJ157184, Nonomuraea antimicrobica, Streptosporangiaceae

AF277200, Nonomuraea rubra, Streptosporangiaceae

U48843, Nonomuraea angiospora, Streptosporangiaceae

U48983, Nonomuraea spiralis, Streptosporangiaceae

U48975, Nonomuraea helvata, Streptosporangiaceae

U48845, Nonomuraea ferruginea, Streptosporangiaceae

U48977, Nonomuraea polychroma, Streptosporangiaceae

AB274967, Nonomuraea coxensis, Streptosporangiaceae

U48844, Nonomuraea fastidiosa, Streptosporangiaceae

AB274966, Nonomuraea bangladeshensis, Streptosporangiaceae

FJ261959, Nonomuraea wenchangensis, Streptosporangiaceae

AJ746362, Nonomuraea kuesteri, Streptosporangiaceae

AB290014, Nonomuraea maheshkhaliensis, Streptosporangiaceae

AB018787, Nonomuraea longicatena, Streptosporangiaceae

GU367158, Nonomuraea endophytica, Streptosporangiaceae

X97892, Nonomuraea salmonea, Streptosporangiaceae

DQ285421, Nonomuraea candida, Streptosporangiaceae

AF277201, Nonomuraea turkmeniaca, Streptosporangiaceae

AB018046, Microbispora corallina, Streptosporangiaceae

FJ199993, Microbispora siamensis, Streptosporangiaceae

D86936, Microbispora rosea subsp. rosea, type sp., Streptosporangiaceae

U48984, Microbispora rosea subsp. aerata, Streptosporangiaceae

AF002266, Microbispora mesophila, Streptosporangiaceae

AB370244, Planotetraspora thailandica, Streptosporangiaceae

AB112082, Planotetraspora silvatica, Streptosporangiaceae

D85496, Planotetraspora mira, type sp., Streptosporangiaceae

FJ426333, Planotetraspora kaengkrachanensis, Streptosporangiaceae

AB025318, Acrocarpospora macrocephala, Streptosporangiaceae

AB006174, Acrocarpospora pleiomorpha, type sp., Streptosporangiaceae

AB188150, Acrocarpospora corrugata, Streptosporangiaceae

D85485, Herbidospora cretacea, type sp., Streptosporangiaceae

FJ214356, Herbidospora osyris, Streptosporangiaceae

AY749433, Herbidospora daliensis, Streptosporangiaceae

DQ246623, Herbidospora yilanensis, Streptosporangiaceae

FJ199995, Herbidospora sakaeratensis, Streptosporangiaceae

U48973, Microtetraspora fusca, Streptosporangiaceae

U48976, Microtetraspora niveoalba, Streptosporangiaceae

X97891, Microtetraspora glauca, type sp., Streptosporangiaceae

AB062383, Microtetraspora malaysiensis, Streptosporangiaceae

D85491, Nonomuraea pusilla, type sp., Streptosporangiaceae

X89953, Sphaerisporangium viridialbum, Streptosporangiaceae

AB208714, Sphaerisporangium melleum, Streptosporangiaceae

HM043727, Sphaerisporangium siamense, Streptosporangiaceae

HM037365, Sphaerisporangium krabiense, Streptosporangiaceae

EU499344, Sphaerisporangium album, Streptosporangiaceae

EU499338, Sphaerisporangium flaviroseum, Streptosporangiaceae

AB208718, Sphaerisporangium rubeum, Streptosporangiaceae

X89939, Sphaerisporangium cinnabarinum, Streptosporangiaceae

AB028653, Planomonospora parontospora subsp. antibiotica, Streptosporangiaceae

AB062382, Planomonospora sphaerica, Streptosporangiaceae

D85495, Planomonospora parontospora subsp. parontospora, type sp., Streptosporangiaceae

AB062381, Planomonospora alba, Streptosporangiaceae

D85494, Planobispora longispora, type sp., Streptosporangiaceae

AB028654, Planobispora rosea, Streptosporangiaceae

AB028655, Planomonospora venezuelensis, Streptosporangiaceae

JF742631, Nonomuraea soli, Streptosporangiaceae

AY039253, Thermopolyspora flexuosa, type sp., Streptosporangiaceae

AF191735, Streptosporangium purpuratum, Streptosporangiaceae

AF191733, Streptosporangium yunnanense, Streptosporangiaceae

U48999, Streptosporangium vulgare, Streptosporangiaceae

X89944, Streptosporangium longisporum, Streptosporangiaceae

AB537172, Streptosporangium amethystogenes subsp. fukuiense, Streptosporangiaceae

X89935, Streptosporangium amethystogenes subsp. amethystogenes, Streptosporangiaceae

AB594818, Streptosporangium oxazolinicum, Streptosporangiaceae

X89934, Streptosporangium album, Streptosporangiaceae

X89947, Streptosporangium roseum, type sp., Streptosporangiaceae

AY996844, Streptosporangium canum, Streptosporangiaceae

AF191734, Streptosporangium subroseum, Streptosporangiaceae

X89945, Streptosporangium nondiastaticum, Streptosporangiaceae

X89946, Streptosporangium pseudovulgare, Streptosporangiaceae

U48992, Streptosporangium fragile, Streptosporangiaceae

X89938, Streptosporangium carneum, Streptosporangiaceae

U48997, Streptosporangium violaceochromogenes, Streptosporangiaceae

U48842, Nonomuraea africana, Streptosporangiaceae

U48979, Nonomuraea recticatena, Streptosporangiaceae

AJ278221, Nonomuraea roseola, Streptosporangiaceae

AB006156, Nonomuraea dietziae, Streptosporangiaceae

FN356742, Nonomuraea rosea, Streptosporangiaceae

HM755723, Nonomuraea rhizophila, Streptosporangiaceae

EU438912, Sinosporangium album, type sp., Unclassified Suborder Streptosporangineae

AF116558, Thermomonospora chromogena, Thermomonosporaceae

U58523, Thermobispora bispora, type sp., Pseudonocardiaceae

EF601829, Actinopolymorpha rutila, Nocardioidaceae

EU438909, Actinopolymorpha cephalotaxi, Nocardioidaceae

AF237815, Actinopolymorpha singaporensis, type sp., Nocardioidaceae

FJ805429, Actinopolymorpha pittospori, Nocardioidaceae

EU706350, Actinopolymorpha alba, Nocardioidaceae

AB535715, Thermasporomyces composti, type sp., Nocardioidaceae

FJ805430, Flindersiella endophytica, type sp., Nocardioidaceae

Nocardioidaceae (71)

AB245396, Nocardioides ginsengisoli, Nocardioidaceae

AF005009, Pimelobacter simplex, type sp., Nocardioidaceae

AF005024, Nocardioides nitrophenolicus, Nocardioidaceae

AB087721, Nocardioides aromaticivorans, Nocardioidaceae

DQ218275, Nocardioides kongjuensis, Nocardioidaceae

FJ423551, Nocardioides caeni, Nocardioidaceae

FM997998, Nocardioides ultimimeridianus, Nocardioidaceae

FM998000, Nocardioides maradonensis, Nocardioidaceae

EF623863, Nocardioides humi, Nocardioidaceae

EF466107, Nocardioides tritolerans, Nocardioidaceae

EF466113, Nocardioides agariphilus, Nocardioidaceae

EF466123, Nocardioides islandensis, Nocardioidaceae

AF004988, Nocardioides albus, type sp., Nocardioidaceae

AF005007, Nocardioides luteus, Nocardioidaceae

DQ401093, Nocardioides marinus, Nocardioidaceae

AB271053, Nocardioides panacihumi, Nocardioidaceae

FJ423762, Nocardioides terrae, Nocardioidaceae

DQ786794, Nocardioides insulae, Nocardioidaceae

AY423719, Nocardioides aestuarii, Nocardioidaceae

AB273624, Nocardioides exalbidus, Nocardioidaceae

AM295258, Nocardioides hwasunensis, Nocardioidaceae

AY423718, Nocardioides ganghwensis, Nocardioidaceae

AJ698724, Nocardioides oleivorans, Nocardioidaceae

DQ411542, Nocardioides furvisabuli, Nocardioidaceae

GU784866, Nocardioides alpinus, Nocardioidaceae

EF466110, Nocardioides sediminis, Nocardioidaceae

EF363712, Nocardioides terrigena, Nocardioidaceae

AF529063, Nocardioides aquiterrae, Nocardioidaceae

U61298, Nocardioides pyridinolyticus, Nocardioidaceae

FJ750845, Nocardioides caricicola, Nocardioidaceae

EF466121, Nocardioides dilutus, Nocardioidaceae

EF466122, Nocardioides halotolerans, Nocardioidaceae

EF555584, Nocardioides hankookensis, Nocardioidaceae

EF626689, Nocardioides fonticola, Nocardioidaceae

AF005008, Nocardioides plantarum, Nocardioidaceae

GQ339904, Nocardioides ginsengagri, Nocardioidaceae

FJ666101, Nocardioides panacisoli, Nocardioidaceae

EF466114, Nocardioides bigeumensis, Nocardioidaceae

DQ121389, Nocardioides lentus, Nocardioidaceae

X94145, Nocardioides aquaticus, Nocardioidaceae

AM981198, Nocardioides hungaricus, Nocardioidaceae

AY835924, Nocardioides kribbensis, Nocardioidaceae

EU143365, Nocardioides basaltis, Nocardioidaceae

DQ401092, Nocardioides salarius, Nocardioidaceae

EF633986, Nocardioides dokdonensis, Nocardioidaceae

AM422448, Nocardioides marinisabuli, Nocardioidaceae

AM398438, Nocardioides daphniae, Nocardioidaceae

AM295338, Marmoricola aequoreus, Nocardioidaceae

FN386723, Marmoricola korecus, Nocardioidaceae

Y18629, Marmoricola aurantiacus, type sp., Nocardioidaceae

FN386750, Marmoricola scoriae, Nocardioidaceae

AB544079, Nocardioides iriomotensis, Nocardioidaceae

EF466117, Nocardioides mesophilus, Nocardioidaceae

EF466120, Marmoricola bigeumensis, Nocardioidaceae

GQ339901, Nocardioides ginsengisegetis, Nocardioidaceae

EF466115, Nocardioides koreensis, Nocardioidaceae

AY633969, Nocardioides alkalitolerans, Nocardioidaceae

AF005006, Nocardioides jensenii, Nocardioidaceae

FJ842646, Nocardioides daedukensis, Nocardioidaceae

AY928902, Nocardioides dubius, Nocardioidaceae

JF937066, Nocardioides daejeonensis, Nocardioidaceae

AB245394, Aeromicrobium ginsengisoli, Nocardioidaceae

AB245387, Aeromicrobium panaciterrae, Nocardioidaceae

AY166703, Aeromicrobium marinum, Nocardioidaceae

AF005022, Aeromicrobium fastidiosum, Nocardioidaceae

AY822044, Aeromicrobium alkaliterrae, Nocardioidaceae

EF133690, Aeromicrobium flavum, Nocardioidaceae

DQ411541, Aeromicrobium tamlense, Nocardioidaceae

AF005021, Aeromicrobium erythreum, type sp., Nocardioidaceae

AM778683, Aeromicrobium ponti, Nocardioidaceae

FJ042789, Aeromicrobium halocynthiae, Nocardioidaceae

Propionibacteriaceae (44)

AJ704570, Propionibacterium acidipropionici, Propionibacteriaceae

AF234623, Propionibacterium microaerophilum, Propionibacteriaceae

AJ704571, Propionibacterium jensenii, Propionibacteriaceae

AJ704572, Propionibacterium thoenii, Propionibacteriaceae

AJ003057, Propionibacterium granulosum, Propionibacteriaceae

AJ003055, Propionibacterium avidum, Propionibacteriaceae

AJ003058, Propionibacterium propionicum, Propionibacteriaceae

AB042288, Propionibacterium acnes, Propionibacteriaceae

EU979537, Propionibacterium acidifaciens, Propionibacteriaceae

AF225962, Propionibacterium australiense, Propionibacteriaceae

D82046, Propionibacterium cyclohexanicum, Propionibacteriaceae

Y10819, Propionibacterium freudenreichii subsp. shermanii, Propionibacteriaceae

X53217, Propionibacterium freudenreichii subsp. freudenreichii, type sp., Propionibacteriaceae

AF038504, Tessaracoccus bendigoensis, type sp., Propionibacteriaceae

AM393882, Tessaracoccus flavescens, Propionibacteriaceae

FM178840, Tessaracoccus lubricantis, Propionibacteriaceae

DQ196625, Brooklawnia cerclae, type sp., Propionibacteriaceae

AJ003056, Propionimicrobium lymphophilum, type sp., Propionibacteriaceae

GU111566, Tessaracoccus oleiagri, Propionibacteriaceae

D85487, Luteococcus japonicus, type sp., Propionibacteriaceae

AJ416758, Luteococcus sanguinis, Propionibacteriaceae

AJ132334, Luteococcus peritonei, Propionibacteriaceae

DQ830982, Aestuariimicrobium kwangyangense, type sp., Propionibacteriaceae

Z78206, Friedmanniella antarctica, type sp., Propionibacteriaceae

AF062535, Friedmanniella spumicola, Propionibacteriaceae

AB445456, Friedmanniella sagamiharensis, Propionibacteriaceae

AB445455, Friedmanniella okinawensis, Propionibacteriaceae

AF084529, Friedmanniella capsulata, Propionibacteriaceae

AJ132943, Friedmanniella lacustris, Propionibacteriaceae

AB445453, Friedmanniella luteola, Propionibacteriaceae

AB445454, Friedmanniella lucida, Propionibacteriaceae

EF601828, Microlunatus aurantiacus, Propionibacteriaceae

Z78207, Microlunatus phosphovorus, type sp., Propionibacteriaceae

AB245389, Microlunatus ginsengisoli, Propionibacteriaceae

FN556016, Microlunatus parietis, Propionibacteriaceae

FJ807672, Microlunatus soli, Propionibacteriaceae

AB271051, Microlunatus panaciterrae, Propionibacteriaceae

FN552748, Auraticoccus monumenti, type sp., Propionibacteriaceae

FR733712, Propionicimonas paludicola, type sp., Propionibacteriaceae

DQ176646, Propionicicella superfundia, type sp., Propionibacteriaceae

AB012607, Micropruina glycogenica, type sp., Propionibacteriaceae

AB298731, Propioniciclava tarda, type sp., Propionibacteriaceae

AY566575, Granulicoccus phenolivorans, type sp., Propionibacteriaceae

AF227165, Propioniferax innocua, type sp., Propionibacteriaceae

EF126967, Kribbella aluminosa, Nocardioidaceae

AY995147, Kribbella swartbergensis, Nocardioidaceae

AY253866, Kribbella jejuensis, Nocardioidaceae

AY253862, Kribbella solani, Nocardioidaceae

EF472955, Kribbella hippodromi, Nocardioidaceae

AM778575, Kribbella catacumbae, Nocardioidaceae

AY995146, Kribbella karoonensis, Nocardioidaceae

AY253864, Kribbella sandramycini, Nocardioidaceae

AY082061, Kribbella yunnanensis, Nocardioidaceae

AY082061, Kribbella yunnanensis, Nocardioidaceae

AY082063, Kribbella antibiotica, Nocardioidaceae

AB245391, Kribbella ginsengisoli, Nocardioidaceae

Y09159, Kribbella koreensis, Nocardioidaceae

AM778577, Kribbella sancticallisti, Nocardioidaceae

HM368615, Kribbella amoyensis, Nocardioidaceae

AY253863, Kribbella flavida, type sp., Nocardioidaceae

AY082062, Kribbella alba, Nocardioidaceae

AJ811962, Kribbella lupini, Nocardioidaceae

CP000481, Acidothermus cellulolyticus, type sp., Acidothermaceae

AB478418, Euzebya tangerina, type sp., Euzebyaceae

EF422408, Nitriliruptor alkaliphilus, type sp., Nitriliruptoraceae

Acidimicrobiaceae (4)

U75647, Acidimicrobium ferrooxidans, type sp., Acidimicrobiaceae

AF251436, Ferrimicrobium acidiphilum, type sp., Acidimicrobiaceae

AY140237, Ferrithrix thermotolerans, type sp., Acidimicrobiaceae

AB517669, Aciditerrimonas ferrireducens, type sp., Unclassified Acidimicrobineae

AB360448, Iamia majanohamensis, type sp., Iamiaceae

AB360343, Ilumatobacter fluminis, type sp., Acidimicrobiaceae

Coriobacteriaceae (29)

AB306661, Adlercreutzia equolifaciens, type sp., Coriobacteriaceae

AB266102, Asaccharobacter celatus, type sp., Coriobacteriaceae

DQ789120, Enterorhabdus caecimuris, Coriobacteriaceae

AM747811, Enterorhabdus mucosicola, type sp., Coriobacteriaceae

U43492, Denitrobacterium detoxificans, type sp., Coriobacteriaceae

AF292375, Eggerthella lenta, type sp., Coriobacteriaceae

AY321958, Eggerthella sinensis, Coriobacteriaceae

AY288517, Paraeggerthella hongkongensis, type sp., Coriobacteriaceae

AM886059, Gordonibacter pamelaeae, type sp., Coriobacteriaceae

AB019260, Cryptobacterium curtum, type sp., Coriobacteriaceae

AF101240, Slackia exigua, type sp., Coriobacteriaceae

AF101241, Slackia heliotrinireducens, Coriobacteriaceae

EU826403, Slackia isoflavoniconvertens, Coriobacteriaceae

AJ608686, Slackia faecicanis, Coriobacteriaceae

AB490806, Slackia piriformis, Coriobacteriaceae

EU377663, Slackia equolifaciens, Coriobacteriaceae

AB031063, Collinsella intestinalis, Coriobacteriaceae

AB031061, Collinsella stercoris, Coriobacteriaceae

AB011816, Collinsella aerofaciens, type sp., Coriobacteriaceae

AB490807, Collinsella tanakaei, Coriobacteriaceae

X79048, Coriobacterium glomerans, type sp., Coriobacteriaceae

AF292373, Olsenella uli, type sp., Coriobacteriaceae

FN178463, Olsenella umbonata, Coriobacteriaceae

AF292374, Olsenella profusa, Coriobacteriaceae

Y17195, Atopobium vaginae, Coriobacteriaceae

L34620, Atopobium fossor, Coriobacteriaceae

X67148, Atopobium minutum, type sp., Coriobacteriaceae

CP001721, Atopobium parvulum, Coriobacteriaceae

AF292371, Atopobium rimae, Coriobacteriaceae

Solirubrobacterales (7)

Patulibacteraceae (3)

AB193261, Patulibacter minatonensis, type sp., Patulibacteraceae

EU710748, Patulibacter ginsengiterrae, Patulibacteraceae

AJ871306, Patulibacter americanus, Patulibacteraceae

CP001854, Conexibacter woesei, type sp., Conexibacteraceae

Solirubrobacteraceae (3)

AY039806, Solirubrobacter pauli, type sp., Solirubrobacteraceae

AB245334, Solirubrobacter soli, Solirubrobacteraceae

EU332825, Solirubrobacter ginsenosidimutans, Solirubrobacteraceae

AJ458462, Thermoleophilum album, type sp., Thermoleophilaceae

JF423906, Gaiella occulta, type sp., Gaiellaceae

Rubrobacteraceae (3)

U65647, Rubrobacter radiotolerans, type sp., Rubrobacteraceae

AF465803, Rubrobacter taiwanensis, Rubrobacteraceae

CP000386, Rubrobacter xylanophilus , Rubrobacteraceae

Chloroflexi (20)

Chloroflexi (5)

Chloroflexales (3)

CP001337, Chloroflexus aggregans, Chloroflexaceae

D38365, Chloroflexus aurantiacus, type sp., Chloroflexaceae

CP000804, Roseiflexus castenholzii, type sp., Chloroflexaceae

Herpetosiphonales (2)

CP000875, Herpetosiphon aurantiacus, type sp., Herpetosiphonaceae

AF039293, Herpetosiphon geysericola, Herpetosiphonaceae

Thermomicrobia (2)

AJ420142, Sphaerobacter thermophilus, type sp., Sphaerobacteraceae

M34115, Thermomicrobium roseum, type sp., Thermomicrobiaceae

Ktedonobacteria (4)

Ktedonobacterales (2)

AM180156, Ktedonobacter racemifer, type sp., Ktedonobacteraceae

AB500145, Thermosporothrix hazakensis, type sp., Thermosporotrichaceae

Thermogemmatisporales (2)

AB547913, Thermogemmatispora foliorum, Thermogemmatisporaceae

AB547912, Thermogemmatispora onikobensis, type sp., Thermogemmatisporaceae

Anaerolineae (6)

AB243672, Bellilinea caldifistulae, type sp., Anaerolineaceae

AB109439, Levilinea saccharolytica, type sp., Anaerolineaceae

AB243673, Longilinea arvoryzae, type sp., Anaerolineaceae

AB109438, Leptolinea tardivitalis, type sp., Anaerolineaceae

AB046413, Anaerolinea thermophila, type sp., Anaerolineaceae

AB109437, Anaerolinea thermolimosa, Anaerolineaceae

AB067647, Caldilinea aerophila, type sp., Caldilineaceae

HM134893, Caldilinea tarbellica, Caldilineaceae

EU679419, Dehalogenimonas lykanthroporepellens, type sp., Dehalococcoidetes

Firmicutes and Tenericutes (2081)

Firmicutes and Tenericutes (2081)

Bacilli and Tenericutes (1402)

Lactobacillales (407)

Lactobacillaceae and Leuconostocaceae (205)

AB366386, Lactobacillus otakiensis, Lactobacillaceae

AB366385, Lactobacillus sunkii, Lactobacillaceae

AJ621553, Lactobacillus kefiri, Lactobacillaceae

AB205056, Lactobacillus parabuchneri, Lactobacillaceae

AY026750, Lactobacillus parakefiri, Lactobacillaceae

AB205055, Lactobacillus buchneri, Lactobacillaceae

AB366388, Lactobacillus kisonensis, Lactobacillaceae

AB366389, Lactobacillus rapi, Lactobacillaceae

AF264701, Lactobacillus diolivorans, Lactobacillaceae

AB262734, Lactobacillus parafarraginis, Lactobacillaceae

AB262731, Lactobacillus farraginis, Lactobacillaceae

M58821, Lactobacillus hilgardii, Lactobacillaceae

AB602570, Lactobacillus senioris, Lactobacillaceae

X95421, Lactobacillus lindneri, Lactobacillaceae

AB498045, Lactobacillus florum, Lactobacillaceae

X76327, Lactobacillus sanfranciscensis, Lactobacillaceae

X76330, Lactobacillus fructivorans, Lactobacillaceae

AJ621552, Lactobacillus homohiochii, Lactobacillaceae

Y11374, Lactobacillus kunkeei, Lactobacillaceae

AB572588, Lactobacillus ozensis, Lactobacillaceae

FJ904277, Lactobacillus koreensis, Lactobacillaceae

FN185731, Lactobacillus paucivorans, Lactobacillaceae

AM158249, Lactobacillus parabrevis, Lactobacillaceae

AJ632219, Lactobacillus hammesii, Lactobacillaceae

AB297927, Lactobacillus senmaizukei, Lactobacillaceae

M58810, Lactobacillus brevis, Lactobacillaceae

AJ534844, Lactobacillus spicheri, Lactobacillaceae

AJ632158, Lactobacillus acidifarinae, Lactobacillaceae

AJ632157, Lactobacillus zymae, Lactobacillaceae

AM259118, Lactobacillus namurensis, Lactobacillaceae

AB005893, Lactobacillus collinoides, Lactobacillaceae

AJ786665, Lactobacillus paracollinoides, Lactobacillaceae

AB365975, Lactobacillus odoratitofui, Lactobacillaceae

AB282889, Lactobacillus similis, Lactobacillaceae

EU678893, Lactobacillus kimchicus, Lactobacillaceae

AM113783, Lactobacillus malefermentans, Lactobacillaceae

D79211, Lactobacillus pentosus, Lactobacillaceae

AJ965482, Lactobacillus plantarum subsp. plantarum, Lactobacillaceae

AJ640078, Lactobacillus plantarum subsp. argentoratensis, Lactobacillaceae

AJ306297, Lactobacillus paraplantarum, Lactobacillaceae

HM443954, Lactobacillus xiangfangensis, Lactobacillaceae

AM905388, Lactobacillus fabifermentans, Lactobacillaceae

AY253659, Lactobacillus antri, Lactobacillaceae

X94229, Lactobacillus oris, Lactobacillaceae

X94230, Lactobacillus panis, Lactobacillaceae

X76329, Lactobacillus pontis, Lactobacillaceae

AF243177, Lactobacillus vaginalis, Lactobacillaceae

AJ250074, Lactobacillus frumenti, Lactobacillaceae

L23507, Lactobacillus reuteri, Lactobacillaceae

AM113776, Lactobacillus coleohominis, Lactobacillaceae

AM279150, Lactobacillus secaliphilus, Lactobacillaceae

AF333975, Lactobacillus ingluviei, Lactobacillaceae

AB288050, Lactobacillus equigenerosi, Lactobacillaceae

AY253658, Lactobacillus gastricus, Lactobacillaceae

ACGI01000130, Lactobacillus fermentum, Lactobacillaceae

AF126738, Lactobacillus mucosae, Lactobacillaceae

AJ564009, Lactobacillus rossiae, Lactobacillaceae

AB370882, Lactobacillus siliginis, Lactobacillaceae

AY733084, Lactobacillus oligofermentans, Lactobacillaceae

AJ575744, Lactobacillus suebicus, Lactobacillaceae

AJ621556, Lactobacillus vaccinostercus, Lactobacillaceae

AF469172, Lactobacillus casei, Lactobacillaceae

D86516, Lactobacillus zeae, Lactobacillaceae

AB181950, Lactobacillus paracasei subsp. tolerans, Lactobacillaceae

D79212, Lactobacillus paracasei subsp. paracasei, Lactobacillaceae

D16552, Lactobacillus rhamnosus, Lactobacillaceae

AB257864, Lactobacillus camelliae, Lactobacillaceae

AF000162, Lactobacillus manihotivorans, Lactobacillaceae

AB608051, Lactobacillus nasuensis, Lactobacillaceae

AF413523, Lactobacillus pantheris, Lactobacillaceae

AB257863, Lactobacillus thailandensis, Lactobacillaceae

M58831, Lactobacillus sharpeae, Lactobacillaceae

AJ305320, Pediococcus acidilactici, Lactobacillaceae

AB362985, Pediococcus lolii, Lactobacillaceae

AJ305321, Pediococcus pentosaceus, Lactobacillaceae

AJ621555, Pediococcus claussenii, Lactobacillaceae

AJ973157, Pediococcus stilesii, Lactobacillaceae

AM709786, Pediococcus argentinicus, Lactobacillaceae

AY956788, Pediococcus cellicola, Lactobacillaceae

AB258357, Pediococcus siamensis, Lactobacillaceae

AY956789, Pediococcus ethanolidurans, Lactobacillaceae

AJ318414, Pediococcus damnosus, type sp., Lactobacillaceae

AJ271383, Pediococcus inopinatus, Lactobacillaceae

D88528, Pediococcus parvulus, Lactobacillaceae

AB602569, Lactobacillus saniviri, Lactobacillaceae

AF183558, Lactobacillus kimchii, Lactobacillaceae

AB018528, Lactobacillus paralimentarius, Lactobacillaceae

AY681134, Lactobacillus bobalius, Lactobacillaceae

M58804, Lactobacillus alimentarius, Lactobacillaceae

M58817, Lactobacillus farciminis, Lactobacillaceae

HQ322270, Lactobacillus futsaii, Lactobacillaceae

AM285450, Lactobacillus crustorum, Lactobacillaceae

AJ313530, Lactobacillus mindensis, Lactobacillaceae

AY690834, Lactobacillus nantensis, Lactobacillaceae

AJ496791, Lactobacillus versmoldensis, Lactobacillaceae

AB332024, Lactobacillus nodensis, Lactobacillaceae

AJ576006, Lactobacillus tucceti, Lactobacillaceae

AJ575741, Lactobacillus coryniformis subsp. torquens, Lactobacillaceae

M58813, Lactobacillus coryniformis subsp. coryniformis, Lactobacillaceae

AJ576007, Lactobacillus rennini, Lactobacillaceae

AM113777, Lactobacillus curvatus, Lactobacillaceae

AM113784, Lactobacillus sakei subsp. sakei, Lactobacillaceae

AY204889, Lactobacillus sakei subsp. carnosus, Lactobacillaceae

AM113778, Lactobacillus graminis, Lactobacillaceae

AB370875, Lactobacillus fuchuensis, Lactobacillaceae

Y17361, Lactobacillus amylolyticus, Lactobacillaceae

AJ306298, Lactobacillus hamsteri, Lactobacillaceae

AY944408, Lactobacillus amylovorus, Lactobacillaceae

AB107638, Lactobacillus kitasatonis, Lactobacillaceae

AB107638, Lactobacillus kitasatonis, Lactobacillaceae

AY773947, Lactobacillus acidophilus, Lactobacillaceae

AM113782, Lactobacillus kefiranofaciens subsp. kefirgranum, Lactobacillaceae

AM113781, Lactobacillus kefiranofaciens subsp. kefiranofaciens, Lactobacillaceae

AF257097, Lactobacillus crispatus, Lactobacillaceae

AY253660, Lactobacillus ultunensis, Lactobacillaceae

AJ417737, Lactobacillus gallinarum, Lactobacillaceae

AM113779, Lactobacillus helveticus, Lactobacillaceae

AY253657, Lactobacillus kalixensis, Lactobacillaceae

FR681899, Lactobacillus gigeriorum, Lactobacillaceae

AJ306299, Lactobacillus intestinalis, Lactobacillaceae

AY773949, Lactobacillus delbrueckii subsp. delbrueckii, type sp., Lactobacillaceae

AY050173, Lactobacillus delbrueckii subsp. lactis, Lactobacillaceae

CR954253, Lactobacillus delbrueckii subsp. bulgaricus , Lactobacillaceae

AY421720, Lactobacillus delbrueckii subsp. indicus, Lactobacillaceae

AB290830, Lactobacillus equicursoris, Lactobacillaceae

M58801, Lactobacillus acetotolerans, Lactobacillaceae

Y18654, Lactobacillus fornicalis, Lactobacillaceae

AF243176, Lactobacillus jensenii, Lactobacillaceae

AJ272391, Lactobacillus psittaci, Lactobacillaceae

AF519171, Lactobacillus gasseri, Lactobacillaceae

AJ002515, Lactobacillus johnsonii, Lactobacillaceae

EU487512, Lactobacillus taiwanensis, Lactobacillaceae

Y16329, Lactobacillus iners, Lactobacillaceae

M58806, Lactobacillus amylophilus, Lactobacillaceae

AM236149, Lactobacillus amylotrophicus, Lactobacillaceae

AY683322, Lactobacillus concavus, Lactobacillaceae

D87679, Lactobacillus dextrinicus, Lactobacillaceae

AB196123, Lactobacillus harbinensis, Lactobacillaceae

Y19167, Lactobacillus perolens, Lactobacillaceae

AB268118, Lactobacillus composti, Lactobacillaceae

AF049745, Paralactobacillus selangorensis, type sp., Lactobacillaceae

Leuconostocaceae (38)

AF175402, Leuconostoc gelidum, Leuconostocaceae

AF173986, Leuconostoc kimchii, Leuconostocaceae

AF439560, Leuconostoc inhae, Leuconostocaceae

AF231131, Leuconostoc gasicomitatum, Leuconostocaceae

AB022925, Leuconostoc carnosum, Leuconostocaceae

HQ263024, Leuconostoc miyukkimchii, Leuconostocaceae

AF111948, Leuconostoc citreum, Leuconostocaceae

AM600682, Leuconostoc holzapfelii, Leuconostocaceae

AB023968, Leuconostoc lactis, Leuconostocaceae

AM940225, Leuconostoc palmae, Leuconostocaceae

AB023237, Leuconostoc pseudomesenteroides, Leuconostocaceae

AB023244, Leuconostoc mesenteroides subsp. dextranicum, Leuconostocaceae

CP000414, Leuconostoc mesenteroides subsp. mesenteroides , type sp., Leuconostocaceae

AB023247, Leuconostoc mesenteroides subsp. cremoris, Leuconostocaceae

HM443957, Leuconostoc mesenteroides subsp. suionicum, Leuconostocaceae

AY169967, Fructobacillus pseudoficulneus, Leuconostocaceae

AB542054, Fructobacillus tropaeoli, Leuconostocaceae

AF360736, Fructobacillus ficulneus, Leuconostocaceae

AJ780981, Fructobacillus durionis, Leuconostocaceae

AF360737, Fructobacillus fructosus, Leuconostocaceae

AF360738, Leuconostoc fallax, Leuconostocaceae

AB221475, Oenococcus kitaharae, Leuconostocaceae

AB022924, Oenococcus oeni, type sp., Leuconostocaceae

AB022926, Weissella halotolerans, Leuconostocaceae

FN813251, Weissella ceti, Leuconostocaceae

AB022920, Weissella minor, Leuconostocaceae

AB023236, Weissella viridescens, type sp., Leuconostocaceae

AB023238, Weissella paramesenteroides, Leuconostocaceae

AB023838, Weissella thailandensis, Leuconostocaceae

S67831, Weissella hellenica, Leuconostocaceae

AB023241, Weissella confusa, Leuconostocaceae

AJ295989, Weissella cibaria, Leuconostocaceae

M23038, Weissella kandleri, Leuconostocaceae

AY035891, Weissella koreensis, Leuconostocaceae

AY028260, Weissella soli, Leuconostocaceae

FM179678, Weissella fabaria, Leuconostocaceae

AM882997, Weissella ghanensis, Leuconostocaceae

EU439435, Weissella beninensis, Leuconostocaceae

AB523780, Lactobacillus floricola, Lactobacillaceae

AB023836, Lactobacillus acidipiscis, Lactobacillaceae

AB326358, Lactobacillus pobuzihii, Lactobacillaceae

M58808, Lactobacillus aviarius subsp. aviarius, Lactobacillaceae

AB267406, Lactobacillus hayakitensis, Lactobacillaceae

AF089108, Lactobacillus salivarius, Lactobacillaceae

AY255802, Lactobacillus saerimneri, Lactobacillaceae

AM292799, Lactobacillus ceti, Lactobacillaceae

M58803, Lactobacillus agilis, Lactobacillaceae

AB048833, Lactobacillus equi, Lactobacillaceae

AB326354, Lactobacillus ruminis, Lactobacillaceae

AB326350, Lactobacillus animalis, Lactobacillaceae

AJ621554, Lactobacillus murinus, Lactobacillaceae

AJ871178, Lactobacillus apodemi, Lactobacillaceae

DQ523489, Lactobacillus ghanensis, Lactobacillaceae

AB162131, Lactobacillus nagelii, Lactobacillaceae

AJ576009, Lactobacillus vini, Lactobacillaceae

AY681127, Lactobacillus oeni, Lactobacillaceae

AB154519, Lactobacillus satsumensis, Lactobacillaceae

AB365976, Lactobacillus capillatus, Lactobacillaceae

AB433982, Lactobacillus sucicola, Lactobacillaceae

DQ664203, Lactobacillus aquaticus, Lactobacillaceae

AY681126, Lactobacillus uvarum, Lactobacillaceae

EU074850, Lactobacillus hordei, Lactobacillaceae

M58824, Lactobacillus mali, Lactobacillaceae

AM905389, Lactobacillus cacaonum, Lactobacillaceae

AB033209, Lactobacillus algidus, Lactobacillaceae

Enterococcaceae and Streptococcaceae (145)

Streptococcaceae (88)

AY099095, Streptococcus oligofermentans, Streptococcaceae

AF432856, Streptococcus sinensis, Streptococcaceae

AY188347, Streptococcus cristatus, Streptococcaceae

AY485604, Streptococcus australis, Streptococcaceae

AF003933, Streptococcus parasanguinis, Streptococcaceae

AF003930, Streptococcus pneumoniae, Streptococcaceae

AY612844, Streptococcus pseudopneumoniae, Streptococcaceae

AF003929, Streptococcus mitis, Streptococcaceae

AY485602, Streptococcus oralis, Streptococcaceae

AY485603, Streptococcus infantis, Streptococcaceae

AF003928, Streptococcus sanguinis, Streptococcaceae

AF003928, Streptococcus sanguinis, Streptococcaceae

AY309095, Streptococcus constellatus subsp. pharyngis, Streptococcaceae

AF104676, Streptococcus constellatus subsp. constellatus, Streptococcaceae

AF104671, Streptococcus intermedius, Streptococcaceae

AF104678, Streptococcus anginosus, Streptococcaceae

AY769997, Streptococcus massiliensis, Streptococcaceae

AF003931, Streptococcus gordonii, Streptococcaceae

GU045364, Streptococcus lactarius, Streptococcaceae

AB008314, Streptococcus peroris, Streptococcaceae

AM774228, Streptococcus plurextorum, Streptococcaceae

AM941160, Streptococcus porci, Streptococcaceae

AF009477, Streptococcus suis, Streptococcaceae

AJ307888, Streptococcus gallinaceus, Streptococcaceae

AF201898, Streptococcus hyointestinalis, Streptococcaceae

AF429763, Streptococcus infantarius subsp. coli, Streptococcaceae

AJ297215, Streptococcus lutetiensis, Streptococcaceae

AF177729, Streptococcus infantarius subsp. infantarius, Streptococcaceae

AJ301607, Streptococcus equinus, Streptococcaceae

DQ232528, Streptococcus gallolyticus subsp. pasteurianus, Streptococcaceae

X94337, Streptococcus gallolyticus subsp. gallolyticus, Streptococcaceae

Z94012, Streptococcus gallolyticus subsp. macedonicus, Streptococcaceae

AF201899, Streptococcus alactolyticus, Streptococcaceae

AY188352, Streptococcus salivarius subsp. salivarius, Streptococcaceae

AY188353, Streptococcus vestibularis, Streptococcaceae

AY188354, Streptococcus salivarius subsp. thermophilus, Streptococcaceae

FN643224, Streptococcus porcorum, Streptococcaceae

AJ420201, Streptococcus ratti, Streptococcaceae

AB501126, Streptococcus ursoris, Streptococcaceae

AY188348, Streptococcus mutans, Streptococcaceae

AJ564067, Streptococcus devriesei, Streptococcaceae

AB469560, Streptococcus dentapri, Streptococcaceae

AY188351, Streptococcus macacae, Streptococcaceae

AY058218, Streptococcus ferus, Streptococcaceae

AB002516, Streptococcus equi subsp. zooepidemicus, Streptococcaceae

DQ303186, Streptococcus equi subsp. equi, Streptococcaceae

AJ605748, Streptococcus equi subsp. ruminatorum, Streptococcaceae

AB259061, Streptococcus dentirousetti, Streptococcaceae

AY188350, Streptococcus downei, Streptococcaceae

AY188349, Streptococcus sobrinus, Streptococcaceae

AJ420198, Streptococcus criceti, Streptococcaceae

AB182324, Streptococcus orisuis, Streptococcaceae

AJ409287, Streptococcus entericus, Streptococcaceae

AY232832, Streptococcus minor, Streptococcaceae

Y07601, Streptococcus hyovaginalis, Streptococcaceae

Y09007, Streptococcus thoraltensis, Streptococcaceae

AJ634751, Streptococcus marimammalium, Streptococcaceae

AM396401, Streptococcus merionis, Streptococcaceae

FN813250, Streptococcus rupicaprae, Streptococcaceae

Y17358, Streptococcus ovis, Streptococcaceae

EF364098, Streptococcus caballi, Streptococcaceae

AF124350, Streptococcus orisratti, Streptococcaceae

EF364097, Streptococcus henryi, Streptococcaceae

AB023573, Streptococcus uberis, Streptococcaceae

AJ131965, Streptococcus urinalis, Streptococcaceae

AB002483, Streptococcus canis, Streptococcaceae

AB002521, Streptococcus pyogenes, type sp., Streptococcaceae

DQ462421, Streptococcus ictaluri, Streptococcaceae

AJ606047, Streptococcus castoreus, Streptococcaceae

DQ303209, Streptococcus pseudoporcinus, Streptococcaceae

AB002523, Streptococcus porcinus, Streptococcaceae

AF176103, Streptococcus didelphis, Streptococcaceae

AJ621053, Streptococcus phocae, Streptococcaceae

AB023574, Streptococcus agalactiae, Streptococcaceae

AJ606046, Streptococcus halichoeri, Streptococcaceae

DQ232540, Streptococcus dysgalactiae subsp. equisimilis, Streptococcaceae

AB002485, Streptococcus dysgalactiae subsp. dysgalactiae, Streptococcaceae

AY584477, Streptococcus parauberis, Streptococcaceae

AF335572, Streptococcus iniae, Streptococcaceae

AB100804, Lactococcus lactis subsp. hordniae, Streptococcaceae

AB100803, Lactococcus lactis subsp. lactis, type sp., Streptococcaceae

AB100802, Lactococcus lactis subsp. cremoris, Streptococcaceae

EU770697, Lactococcus lactis subsp. tructae, Streptococcaceae

AB598994, Lactococcus garvieae, Streptococcaceae

AJ439543, Lactovum miscens, type sp., Streptococcaceae

EF694028, Lactococcus chungangensis, Streptococcaceae

EF694030, Lactococcus raffinolactis, Streptococcaceae

DQ343754, Lactococcus piscium, Streptococcaceae

EF694029, Lactococcus plantarum, Streptococcaceae

AY533171, Pilibacter termitis, type sp., Enterococcaceae

AY396047, Enterococcus hermanniensis, Enterococcaceae

DQ411812, Enterococcus pallens, Enterococcaceae

AF133535, Enterococcus avium, Enterococcaceae

Y18296, Enterococcus raffinosus, Enterococcaceae

DQ411810, Enterococcus gilvus, Enterococcaceae

AJ301835, Enterococcus malodoratus, Enterococcaceae

AJ891167, Enterococcus devriesei, Enterococcaceae

AF061002, Enterococcus pseudoavium, Enterococcaceae

HQ378515, Enterococcus viikkiensis, Enterococcaceae

AJ301830, Enterococcus faecium, Enterococcaceae

GU983697, Enterococcus lactis, Enterococcaceae

AF539705, Enterococcus ratti, Enterococcaceae

Y17302, Enterococcus hirae, Enterococcaceae

AJ276354, Enterococcus durans, Enterococcaceae

EF197994, Enterococcus thailandicus, Enterococcaceae

AF061013, Enterococcus mundtii, Enterococcaceae

AJ271329, Enterococcus villorum, Enterococcaceae

AF039903, Enterococcus casseliflavus, Enterococcaceae

AF039900, Enterococcus gallinarum, Enterococcaceae

X76177, Enterococcus canis, Enterococcaceae

AY862507, Melissococcus plutonius, type sp., Enterococcaceae

AJ888906, Enterococcus canintestini, Enterococcaceae

AF061007, Enterococcus dispar, Enterococcaceae

EU522087, Tetragenococcus halophilus subsp. flandriensis, Enterococcaceae

D88668, Tetragenococcus halophilus subsp. halophilus, type sp., Enterococcaceae

AJ301840, Tetragenococcus solitarius, Enterococcaceae

AY690334, Tetragenococcus koreensis, Enterococcaceae

D88824, Tetragenococcus muriaticus, Enterococcaceae

EU522083, Tetragenococcus osmophilus, Enterococcaceae

EF154454, Enterococcus camelliae, Enterococcaceae

AJ582753, Enterococcus italicus, Enterococcaceae

AF061001, Enterococcus sulfureus, Enterococcaceae

AF061004, Enterococcus saccharolyticus, Enterococcaceae

Y11621, Enterococcus asini, Enterococcaceae

AF061009, Enterococcus cecorum, Enterococcaceae

AF061009, Enterococcus cecorum, Enterococcaceae

AF061006, Enterococcus columbae, Enterococcaceae

AJ854484, Catellicoccus marimammalium, type sp., Enterococcaceae

AJ877015, Enterococcus aquimarinus, Enterococcaceae

AY028437, Enterococcus phoeniculicola, Enterococcaceae

AY943820, Enterococcus caccae, Enterococcaceae

AM039966, Enterococcus silesiacus, Enterococcaceae

GU457264, Enterococcus ureasiticus, Enterococcaceae

AF286832, Enterococcus haemoperoxidus, Enterococcaceae

AF286831, Enterococcus moraviensis, Enterococcaceae

HQ847537, Enterococcus plantarum, Enterococcaceae

AB012212, Enterococcus faecalis, type sp., Enterococcaceae

GU457262, Enterococcus quebecensis, Enterococcaceae

AM039968, Enterococcus termitis, Enterococcaceae

AF445297, Vagococcus elongatus, Enterococcaceae

Y17152, Vagococcus lutrae, Enterococcaceae

FJ211190, Vagococcus acidifermentans, Enterococcaceae

FJ360897, Vagococcus penaei, Enterococcaceae

AY179329, Vagococcus carniphilus, Enterococcaceae

Y18098, Vagococcus fluvialis, type sp., Enterococcaceae

Y18097, Vagococcus salmoninarum, Enterococcaceae

AJ243326, Vagococcus fessus, Enterococcaceae

GU459067, Pisciglobus halotolerans, type sp., Carnobacteriaceae

Y17300, Desemzia incerta, type sp., Carnobacteriaceae

AB268549, Alkalibacterium indicireducens, Carnobacteriaceae

AB294166, Alkalibacterium pelagium, Carnobacteriaceae

AB294165, Alkalibacterium thalassium, Carnobacteriaceae

AF143511, Alkalibacterium olivapovliticus, type sp., Carnobacteriaceae

AB188091, Alkalibacterium iburiense, Carnobacteriaceae

AB125938, Alkalibacterium psychrotolerans, Carnobacteriaceae

AB294171, Alkalibacterium kapii, Carnobacteriaceae

AB555562, Alkalibacterium subtropicum, Carnobacteriaceae

AB294167, Alkalibacterium putridalgicola, Carnobacteriaceae

AB247277, Marinilactibacillus piezotolerans, Carnobacteriaceae

AB083406, Marinilactibacillus psychrotolerans, type sp., Carnobacteriaceae

AJ410303, Allofustis seminis, type sp., Carnobacteriaceae

AF445248, Atopostipes suicloacalis, type sp., Carnobacteriaceae

X59765, Alloiococcus otitis, type sp., Carnobacteriaceae

X70907, Dolosigranulum pigrum, type sp., Carnobacteriaceae

AJ634917, Atopococcus tabaci, type sp., Carnobacteriaceae

AB430339, Lacticigenium naphtae, type sp., Carnobacteriaceae

S86170, Carnobacterium funditum, Carnobacteriaceae

AB083414, Carnobacterium mobile, Carnobacteriaceae

Z73313, Carnobacterium inhibens, Carnobacteriaceae

AF425608, Carnobacterium viridans, Carnobacteriaceae

EU817500, Carnobacterium jeotgali, Carnobacteriaceae

AF450136, Carnobacterium pleistocenium, Carnobacteriaceae

AJ302648, Isobaculum melis, type sp., Carnobacteriaceae

AJ387905, Carnobacterium gallinarum, Carnobacteriaceae

M58825, Carnobacterium maltaromaticum, Carnobacteriaceae

M58816, Carnobacterium divergens, type sp., Carnobacteriaceae

AJ306612, Trichococcus collinsii, Carnobacteriaceae

AF394926, Trichococcus patagoniensis, Carnobacteriaceae

X87150, Trichococcus pasteurii, Carnobacteriaceae

AJ306611, Trichococcus flocculiformis, type sp., Carnobacteriaceae

AJ296179, Trichococcus palustris, Carnobacteriaceae

Y16546, Atopobacter phocae, type sp., Carnobacteriaceae

FM177901, Bavariicoccus seileri, type sp., Enterococcaceae

D50540, Granulicatella adiacens, type sp., Carnobacteriaceae

AF016390, Granulicatella elegans, Carnobacteriaceae

Y16547, Granulicatella balaenopterae, Carnobacteriaceae

Aerococcaceae (18)

Y18053, Facklamia languida, Aerococcaceae

AJ277381, Facklamia miroungae, Aerococcaceae

Y10772, Facklamia hominis, type sp., Aerococcaceae

Y15716, Facklamia ignava, Aerococcaceae

Y17820, Facklamia tabacinasalis, Aerococcaceae

Y16426, Ignavigranum ruoffiae, type sp., Aerococcaceae

AJ012666, Dolosicoccus paucivorans, type sp., Aerococcaceae

Y17312, Facklamia sourekii, Aerococcaceae

AJ297627, Globicatella sulfidifaciens, Aerococcaceae

Y17780, Eremococcus coleocola, type sp., Aerococcaceae

D50541, Abiotrophia defectiva, type sp., Aerococcaceae

D87677, Pediococcus urinaeequi, Lactobacillaceae

ADNT01000041, Aerococcus viridans, type sp., Aerococcaceae

AM230658, Aerococcus suis, Aerococcaceae

AJ278341, Aerococcus urinaehominis, Aerococcaceae

Y17005, Aerococcus christensenii, Aerococcaceae

M77819, Aerococcus urinae, Aerococcaceae

AJ276512, Aerococcus sanguinicola, Aerococcaceae

Tenericutes (186)

Mycoplasmatales (109)

M24290, Mycoplasma agalactiae, Mycoplasmataceae

U02968, Mycoplasma bovis, Mycoplasmataceae

AF221118, Mycoplasma primatum, Mycoplasmataceae

U16760, Mycoplasma leopharyngis, Mycoplasmataceae

AF221116, Mycoplasma maculosum, Mycoplasmataceae

U67943, Mycoplasma adleri, Mycoplasmataceae

U15795, Mycoplasma felifaucium, Mycoplasmataceae

AF221117, Mycoplasma opalescens, Mycoplasmataceae

AF221111, Mycoplasma caviae, Mycoplasmataceae

M24289, Mycoplasma fermentans, Mycoplasmataceae

AF221119, Mycoplasma spermatophilum, Mycoplasmataceae

AF221115, Mycoplasma lipofaciens, Mycoplasmataceae

M24291, Mycoplasma bovigenitalium, Mycoplasmataceae

M24582, Mycoplasma californicum, Mycoplasmataceae

U16323, Mycoplasma simbae, Mycoplasmataceae

AM774638, Mycoplasma mucosicanis, Mycoplasmataceae

AF304324, Mycoplasma phocirhinis, Mycoplasmataceae

AF221112, Mycoplasma columbinasale, Mycoplasmataceae

AF221114, Mycoplasma iners, Mycoplasmataceae

AF221113, Mycoplasma columbinum, Mycoplasmataceae

L24105, Mycoplasma gallinarum, Mycoplasmataceae

L24106, Mycoplasma meleagridis, Mycoplasmataceae

U58997, Mycoplasma hyopharyngis, Mycoplasmataceae

M24581, Mycoplasma lipophilum, Mycoplasmataceae

AF412973, Mycoplasma citelli, Mycoplasmataceae

AF412987, Mycoplasma oxoniensis, Mycoplasmataceae

AF412975, Mycoplasma columborale, Mycoplasmataceae

U22013, Mycoplasma sturni, Mycoplasmataceae

AF412971, Mycoplasma buteonis, Mycoplasmataceae

AF412971, Mycoplasma buteonis, Mycoplasmataceae

AF412980, Mycoplasma gallopavonis, Mycoplasmataceae

AF412981, Mycoplasma glycophilum, Mycoplasmataceae

L08054, Mycoplasma corogypsi, Mycoplasmataceae

AF340023, Mycoplasma canis, Mycoplasmataceae

AF412978, Mycoplasma cynos, Mycoplasmataceae

U44766, Mycoplasma bovirhinis, Mycoplasmataceae

U16759, Mycoplasma leonicaptivi, Mycoplasmataceae

X52083, Mycoplasma synoviae, Mycoplasmataceae

U09787, Mycoplasma felis, Mycoplasmataceae

AF412986, Mycoplasma mustelae, Mycoplasmataceae

L24104, Mycoplasma gallinaceum, Mycoplasmataceae

AF412989, Mycoplasma verecundum, Mycoplasmataceae

AF412969, Mycoplasma alligatoris, Mycoplasmataceae

AF412977, Mycoplasma crocodyli, Mycoplasmataceae

AF412970, Mycoplasma anatis, Mycoplasmataceae

U58504, Mycoplasma pullorum, Mycoplasmataceae

AF221121, Mycoplasma elephantis, Mycoplasmataceae

AF221120, Mycoplasma equigenitalium, Mycoplasmataceae

AF125593, Mycoplasma indiense, Mycoplasmataceae

AY796060, Mycoplasma orale, Mycoplasmataceae

U26730, Mycoplasma hyosynoviae, Mycoplasmataceae

AF125590, Mycoplasma faucium, Mycoplasmataceae

AF125588, Mycoplasma subdolum, Mycoplasmataceae

AF125586, Mycoplasma buccale, Mycoplasmataceae

AF125583, Mycoplasma salivarium, Mycoplasmataceae

M24580, Mycoplasma arthritidis, Mycoplasmataceae

AF125585, Mycoplasma equirhinis, Mycoplasmataceae

AF304325, Mycoplasma phocidae, Mycoplasmataceae

AF443616, Mycoplasma hominis, Mycoplasmataceae

AF125581, Mycoplasma arginini, Mycoplasmataceae

U15796, Mycoplasma gateae, Mycoplasmataceae

U44769, Mycoplasma canadense, Mycoplasmataceae

U44764, Mycoplasma alkalescens, Mycoplasmataceae

U67944, Mycoplasma auris, Mycoplasmataceae

AF304323, Mycoplasma phocicerebrale, Mycoplasmataceae

FR682077, Mycoplasma neophronis, Mycoplasmataceae

AF125587, Mycoplasma spumans, Mycoplasmataceae

AF125591, Mycoplasma falconis, Mycoplasmataceae

AF125584, Mycoplasma anseris, Mycoplasmataceae

AF125592, Mycoplasma cloacale, Mycoplasmataceae

AF125589, Mycoplasma gypis, Mycoplasmataceae

U09786, Mycoplasma agassizii, Mycoplasmataceae

U19768, Mycoplasma testudineum, Mycoplasmataceae

AF125582, Mycoplasma pulmonis, Mycoplasmataceae

AF412979, Mycoplasma dispar, Mycoplasmataceae

U44771, Mycoplasma ovipneumoniae, Mycoplasmataceae

X62699, Mycoplasma flocculare, Mycoplasmataceae

AE017243, Mycoplasma hyopneumoniae, Mycoplasmataceae

U44768, Mycoplasma bovoculi, Mycoplasmataceae

U44770, Mycoplasma conjunctivae, Mycoplasmataceae

AF412982, Mycoplasma hyorhinis, Mycoplasmataceae

AF538681, Mycoplasma collis, Mycoplasmataceae

AF412976, Mycoplasma cricetuli, Mycoplasmataceae

M23944, Mycoplasma neurolyticum, Mycoplasmataceae

AF412983, Mycoplasma lagogenitalium, Mycoplasmataceae

AF538683, Mycoplasma molare, Mycoplasmataceae

AY714305, Mycoplasma iguanae, Mycoplasmataceae

AF412984, Mycoplasma moatsii, Mycoplasmataceae

AF412988, Mycoplasma sualvi, Mycoplasmataceae

M24480, Mycoplasma mobile, Mycoplasmataceae

D78651, Ureaplasma felinum, Mycoplasmataceae

D78649, Ureaplasma cati, Mycoplasmataceae

D78648, Ureaplasma canigenitalium, Mycoplasmataceae

D78650, Ureaplasma diversum, Mycoplasmataceae

AF073456, Ureaplasma parvum, Mycoplasmataceae

AF073450, Ureaplasma urealyticum , type sp., Mycoplasmataceae

U62937, Ureaplasma gallorale, Mycoplasmataceae

M24293, Mycoplasma iowae, Mycoplasmataceae

M23939, Mycoplasma muris, Mycoplasmataceae

L10839, Mycoplasma penetrans, Mycoplasmataceae

AF212859, Mycoplasma microti, Mycoplasmataceae

AY531655, Mycoplasma amphoriforme, Mycoplasmataceae

U09788, Mycoplasma testudinis, Mycoplasmataceae

M23940, Mycoplasma pirum, Mycoplasmataceae

U44765, Mycoplasma alvi, Mycoplasmataceae

L24103, Mycoplasma imitans, Mycoplasmataceae

X77334, Mycoplasma genitalium, Mycoplasmataceae

AF132740, Mycoplasma pneumoniae, Mycoplasmataceae

AF125879, Mycoplasma cavipharyngis, Mycoplasmataceae

AF125878, Mycoplasma fastidiosum, Mycoplasmataceae

Entomoplasmatales (59)

DQ860100, Spiroplasma lineolae, Spiroplasmataceae

FR733693, Spiroplasma tabanidicola, Spiroplasmataceae

M24475, Spiroplasma gladiatoris, Spiroplasmataceae

AY189132, Spiroplasma helicoides, Spiroplasmataceae

AY189126, Spiroplasma chinense, Spiroplasmataceae

AY189311, Spiroplasma velocicrescens, Spiroplasmataceae

AY189129, Spiroplasma culicicola, Spiroplasmataceae

AY189307, Spiroplasma montanense, Spiroplasmataceae

GU993267, Spiroplasma apis, Spiroplasmataceae

FR733690, Spiroplasma clarkii, Spiroplasmataceae

AY189306, Spiroplasma litorale, Spiroplasmataceae

AY189310, Spiroplasma turonicum, Spiroplasmataceae

AY189128, Spiroplasma corruscae, Spiroplasmataceae

AY345990, Entomoplasma melaleucae, Entomoplasmataceae

FR733691, Spiroplasma diabroticae, Spiroplasmataceae

AY189131, Spiroplasma floricola, Spiroplasmataceae

GU585673, Spiroplasma monobiae, Spiroplasmataceae

DQ861914, Spiroplasma cantharicola, Spiroplasmataceae

AY189130, Spiroplasma diminutum, Spiroplasmataceae

HM037992, Spiroplasma taiwanense, Spiroplasmataceae

AY189134, Spiroplasma lampyridicola, Spiroplasmataceae

AY189305, Spiroplasma leptinotarsae, Spiroplasmataceae

AY189125, Spiroplasma alleghenense, Spiroplasmataceae

AY189308, Spiroplasma sabaudiense, Spiroplasmataceae

U26046, Mycoplasma capricolum subsp. capricolum, Mycoplasmataceae

U26054, Mycoplasma leachii, Mycoplasmataceae

M94728, Mycoplasma capricolum subsp. capripneumoniae, Mycoplasmataceae

BX293980, Mycoplasma mycoides subsp. mycoides, type sp., Mycoplasmataceae

U26037, Mycoplasma mycoides subsp. capri, Mycoplasmataceae

U67945, Mycoplasma cottewii, Mycoplasmataceae

U67946, Mycoplasma yeatsii, Mycoplasmataceae

U26055, Mycoplasma putrefaciens, Mycoplasmataceae

AF305693, Mesoplasma entomophilum, Entomoplasmataceae

AY174170, Mesoplasma grammopterae, Entomoplasmataceae

AF300327, Mesoplasma florum, type sp., Entomoplasmataceae

AY187288, Mesoplasma tabanidae, Entomoplasmataceae

DQ514605, Mesoplasma coleopterae, Entomoplasmataceae

AY166704, Mesoplasma chauliocola, Entomoplasmataceae

AY168929, Mesoplasma corruscae, Entomoplasmataceae

AY351331, Mesoplasma seiffertii, Entomoplasmataceae

AY231458, Mesoplasma syrphidae, Entomoplasmataceae

AY177627, Mesoplasma photuris, Entomoplasmataceae

AF036954, Entomoplasma freundtii, Entomoplasmataceae

AY157871, Entomoplasma somnilux, Entomoplasmataceae

AF547212, Entomoplasma lucivorax, Entomoplasmataceae

AY155670, Entomoplasma luminosum, Entomoplasmataceae

AF303132, Mesoplasma lactucae, Entomoplasmataceae

Spiroplasmataceae (10)

X63781, Spiroplasma citri, type sp., Spiroplasmataceae

AY325304, Spiroplasma melliferum, Spiroplasmataceae

GU562447, Spiroplasma kunkelii, Spiroplasmataceae

AY772395, Spiroplasma phoeniceum, Spiroplasmataceae

AY189133, Spiroplasma insolitum, Spiroplasmataceae

AY771927, Spiroplasma penaei, Spiroplasmataceae

M24483, Spiroplasma poulsonii, Spiroplasmataceae

DQ917753, Spiroplasma eriocheiris, Spiroplasmataceae

AY189127, Spiroplasma chrysopicola, Spiroplasmataceae

AY189309, Spiroplasma syrphidicola, Spiroplasmataceae

GU585671, Spiroplasma ixodetis, Spiroplasmataceae

GU993266, Spiroplasma platyhelix, Spiroplasmataceae

Acholeplasmataceae (15)

U14905, Acholeplasma laidlawii, type sp., Acholeplasmataceae

AY257485, Acholeplasma pleciae, Acholeplasmataceae

AY538166, Acholeplasma granularum, Acholeplasmataceae

U14904, Acholeplasma oculi, Acholeplasmataceae

AY538165, Acholeplasma equifetale, Acholeplasmataceae

AY538167, Acholeplasma hippikon, Acholeplasmataceae

AY538164, Acholeplasma cavigenitalium, Acholeplasmataceae

M23933, Acholeplasma modicum, Acholeplasmataceae

AF412968, Acholeplasma axanthum, Acholeplasmataceae

L33734, Acholeplasma palmae, Acholeplasmataceae

AY538170, Acholeplasma parvum, Acholeplasmataceae

U16758, Mycoplasma feliminutum, Mycoplasmataceae

AY538168, Acholeplasma morum, Acholeplasmataceae

AF031479, Acholeplasma vituli, Acholeplasmataceae

AY538163, Acholeplasma brassicae, Acholeplasmataceae

Anaeroplasmataceae (3)

M25049, Anaeroplasma bactoclasticum, Anaeroplasmataceae

M23934, Anaeroplasma varium, Anaeroplasmataceae

M25050, Anaeroplasma abactoclasticum, type sp., Anaeroplasmataceae

AJ417075, Allobaculum stercoricanis, type sp., Erysipelotrichaceae

M59230, Eubacterium biforme, Eubacteriaceae

L34617, Eubacterium cylindroides, Eubacteriaceae

M23730, Streptococcus pleomorphus, Streptococcaceae

M23732, Clostridium innocuum, Clostridiaceae

L34683, Eubacterium tortuosum, Eubacteriaceae

L34682, Eubacterium dolichum, Eubacteriaceae

AF220064, Bulleidia extructa, type sp., Erysipelotrichaceae

AB031056, Solobacterium moorei, type sp., Erysipelotrichaceae

GU585668, Anaerorhabdus furcosa, type sp., Bacteroidaceae

Y11466, Holdemania filiformis, type sp., Erysipelotrichaceae

AB034200, Erysipelothrix rhusiopathiae, type sp., Erysipelotrichaceae

AB055906, Erysipelothrix tonsillarum, Erysipelotrichaceae

AJ550617, Erysipelothrix inopinata, Erysipelotrichaceae

AJ621549, Eggerthia catenaformis, type sp., Erysipelotrichaceae

AB210824, Sharpea azabuensis, type sp., Lactobacillaceae

AB210825, Kandleria vitulina, type sp., Erysipelotrichaceae

AB030224, Catenibacterium mitsuokai, type sp., Erysipelotrichaceae

AB030219, Coprobacillus cateniformis, type sp., Erysipelotrichaceae

Y18188, Clostridium cocleatum, Clostridiaceae

X75908, Clostridium spiroforme, Clostridiaceae

DQ100445, Clostridium saccharogumia, Clostridiaceae

X73440, Clostridium ramosum, Clostridiaceae

M22351, Asteroleplasma anaerobium, type sp., Anaeroplasmataceae

AF349724, Turicibacter sanguinis, type sp., Erysipelotrichaceae

EF999972, Haloplasma contractile, type sp., Haloplasmataceae

Incertae Sedis XI (7)

Y13365, Gemella bergeri, Unclassified Bacillales

AJ251987, Gemella cuniculi, Unclassified Bacillales

Y17280, Gemella palaticanis, Unclassified Bacillales

EU427463, Gemella asaccharolytica, Unclassified Bacillales

L14327, Gemella morbillorum, Unclassified Bacillales

L14326, Gemella haemolysans, type sp., Unclassified Bacillales

Y13364, Gemella sanguinis, Unclassified Bacillales

Staphylococcaceae (87)

AB009938, Staphylococcus delphini, Staphylococcaceae

D83369, Staphylococcus intermedius, Staphylococcaceae

AJ780976, Staphylococcus pseudintermedius, Staphylococcaceae

S83568, Staphylococcus schleiferi subsp. schleiferi, Staphylococcaceae

AB009945, Staphylococcus schleiferi subsp. coagulans, Staphylococcaceae

HM484980, Staphylococcus agnetis, Staphylococcaceae

D83368, Staphylococcus hyicus, Staphylococcaceae

D83360, Staphylococcus chromogenes, Staphylococcaceae

D83364, Staphylococcus felis, Staphylococcaceae

X84731, Staphylococcus lutrae, Staphylococcaceae

EU888120, Staphylococcus microti , Staphylococcaceae

FM242137, Staphylococcus rostri, Staphylococcaceae

FR733703, Staphylococcus muscae, Staphylococcaceae

Y15750, Staphylococcus condimenti, Staphylococcaceae

Y15754, Staphylococcus piscifermentans, Staphylococcaceae

AB233329, Staphylococcus carnosus subsp. utilis, Staphylococcaceae

D83373, Staphylococcus simulans, Staphylococcaceae

AB009934, Staphylococcus carnosus subsp. carnosus, Staphylococcaceae

D83358, Staphylococcus auricularis, Staphylococcaceae

AP008934, Staphylococcus saprophyticus subsp. saprophyticus, Staphylococcaceae

AB233327, Staphylococcus saprophyticus subsp. bovis, Staphylococcaceae

D83374, Staphylococcus xylosus, Staphylococcaceae

AB009933, Staphylococcus arlettae, Staphylococcaceae

D83366, Staphylococcus gallinarum, Staphylococcaceae

AF527483, Staphylococcus equorum subsp. linens, Staphylococcaceae

AB009939, Staphylococcus equorum subsp. equorum, Staphylococcaceae

AF004220, Staphylococcus succinus subsp. succinus, Staphylococcaceae

AJ320272, Staphylococcus succinus subsp. casei, Staphylococcaceae

AB009940, Staphylococcus kloosii, Staphylococcaceae

AB009936, Staphylococcus cohnii subsp. urealyticus, Staphylococcaceae

D83361, Staphylococcus cohnii subsp. cohnii, Staphylococcaceae

AJ517414, Staphylococcus nepalensis, Staphylococcaceae

EU707796, Staphylococcus massiliensis, Staphylococcaceae

AF322002, Staphylococcus pettenkoferi, Staphylococcaceae

L37599, Staphylococcus capitis subsp. capitis, Staphylococcaceae

AB009935, Staphylococcus caprae, Staphylococcaceae

AB009937, Staphylococcus capitis subsp. urealyticus, Staphylococcaceae

D83363, Staphylococcus epidermidis, Staphylococcaceae

L37602, Staphylococcus saccharolyticus, Staphylococcaceae

L36472, Staphylococcus aureus subsp. aureus, type sp., Staphylococcaceae

AY727530, Staphylococcus simiae, Staphylococcaceae

D83355, Staphylococcus aureus subsp. anaerobius, Staphylococcaceae

AB009944, Staphylococcus pasteuri, Staphylococcaceae

L37603, Staphylococcus warneri, Staphylococcaceae

FJ389206, Staphylococcus devriesei, Staphylococcaceae

AB233326, Staphylococcus hominis subsp. novobiosepticus, Staphylococcaceae

X66101, Staphylococcus hominis subsp. hominis, Staphylococcaceae

X66100, Staphylococcus haemolyticus, Staphylococcaceae

AB009941, Staphylococcus lugdunensis, Staphylococcaceae

AB233332, Staphylococcus sciuri subsp. rodentium, Staphylococcaceae

AB233331, Staphylococcus sciuri subsp. carnaticus, Staphylococcaceae

AJ421446, Staphylococcus sciuri subsp. sciuri, Staphylococcaceae

AB233330, Staphylococcus fleurettii, Staphylococcaceae

AB009946, Staphylococcus vitulinus, Staphylococcaceae

D83370, Staphylococcus lentus, Staphylococcaceae

GQ222244, Staphylococcus stepanovicii, Staphylococcaceae

Y15714, Macrococcus bovicus, Staphylococcaceae

AY119687, Macrococcus lamae, Staphylococcaceae

AY119686, Macrococcus brunensis, Staphylococcaceae

Y15713, Macrococcus carouselicus, Staphylococcaceae

Y15712, Macrococcus equipercicus, type sp., Staphylococcaceae

AY119685, Macrococcus hajekii, Staphylococcaceae

D83359, Macrococcus caseolyticus, Staphylococcaceae

GU295938, Jeotgalicoccus coquinae, Staphylococcaceae

AY028926, Jeotgalicoccus psychrophilus, Staphylococcaceae

GU295939, Jeotgalicoccus aerolatus, Staphylococcaceae

FJ386517, Jeotgalicoccus halophilus, Staphylococcaceae

AY028925, Jeotgalicoccus halotolerans, type sp., Staphylococcaceae

FJ237390, Jeotgalicoccus nanhaiensis, Staphylococcaceae

FJ158840, Jeotgalicoccus huakuii, Staphylococcaceae

EU583727, Jeotgalicoccus marinus, Staphylococcaceae

AJ251530, Jeotgalicoccus pinnipedialis, Staphylococcaceae

EU240886, Nosocomiicoccus ampullae, type sp., Staphylococcaceae

DQ837380, Salinicoccus kunmingensis, Staphylococcaceae

FJ436724, Salinicoccus qingdaonensis, Staphylococcaceae

EF177692, Salinicoccus albus, Staphylococcaceae

AF275710, Salinicoccus alkaliphilus, Staphylococcaceae

DQ471329, Salinicoccus jeotgali, Staphylococcaceae

DQ333949, Salinicoccus salsiraiae, Staphylococcaceae

AB258358, Salinicoccus siamensis, Staphylococcaceae

DQ989633, Salinicoccus halodurans, Staphylococcaceae

FJ182049, Salinicoccus carnicancri , Staphylococcaceae

AY028927, Salinicoccus hispanicus, Staphylococcaceae

FR669114, Salinicoccus sesuvii, Staphylococcaceae

DQ352839, Salinicoccus luteus, Staphylococcaceae

DQ767692, Salinicoccus iranensis, Staphylococcaceae

X94559, Salinicoccus roseus, type sp., Staphylococcaceae

Paenibacillaceae 2 (25)

AB271756, Brevibacillus brevis, type sp., Paenibacillaceae

AB112712, Brevibacillus formosus, Paenibacillaceae

AB112716, Brevibacillus agri, Paenibacillaceae

D78458, Brevibacillus centrosporus, Paenibacillaceae

AB112713, Brevibacillus choshinensis, Paenibacillaceae

AB112715, Brevibacillus reuszeri, Paenibacillaceae

AB112714, Brevibacillus parabrevis, Paenibacillaceae

AB112717, Brevibacillus limnophilus, Paenibacillaceae

AF378232, Brevibacillus invocatus, Paenibacillaceae

EU383033, Brevibacillus panacihumi, Paenibacillaceae

D16271, Brevibacillus laterosporus, Paenibacillaceae

EU375457, Brevibacillus fluminis, Paenibacillaceae

AB112721, Brevibacillus borstelensis, Paenibacillaceae

AB245376, Brevibacillus ginsengisoli, Paenibacillaceae

AJ715378, Brevibacillus levickii, Paenibacillaceae

HQ419073, Brevibacillus aydinogluensis, Paenibacillaceae

Z26921, Brevibacillus thermoruber, Paenibacillaceae

X94194, Aneurinibacillus aneurinilyticus, type sp., Paenibacillaceae

X94195, Aneurinibacillus migulanus, Paenibacillaceae

AB112725, Aneurinibacillus danicus, Paenibacillaceae

AJ715385, Aneurinibacillus terranovensis, Paenibacillaceae

X94196, Aneurinibacillus thermoaerophilus, Paenibacillaceae

Y14578, Ammoniphilus oxalaticus, type sp., Paenibacillaceae

Y14580, Ammoniphilus oxalivorans, Paenibacillaceae

Y14581, Oxalophagus oxalicus, type sp., Paenibacillaceae

Incertae Sedis XII (13)

DQ019166, Exiguobacterium aurantiacum, type sp., Unclassified Bacillales

AM072764, Exiguobacterium mexicanum, Unclassified Bacillales

AY594264, Exiguobacterium aestuarii, Unclassified Bacillales

AY818050, Exiguobacterium profundum, Unclassified Bacillales

AY594266, Exiguobacterium marinum, Unclassified Bacillales

CP001022, Exiguobacterium sibiricum, Unclassified Bacillales

DQ019165, Exiguobacterium undae, Unclassified Bacillales

AM072763, Exiguobacterium artemiae, Unclassified Bacillales

AB105164, Exiguobacterium oxidotolerans, Unclassified Bacillales

DQ019164, Exiguobacterium antarcticum, Unclassified Bacillales

AY864633, Exiguobacterium soli, Unclassified Bacillales

DQ019167, Exiguobacterium acetylicum, Unclassified Bacillales

AJ846291, Exiguobacterium indicum, Unclassified Bacillales

Listeriaceae (11)

X98529, Listeria ivanovii subsp. londoniensis, Listeriaceae

X98528, Listeria ivanovii subsp. ivanovii, Listeriaceae

DQ065845, Listeria seeligeri, Listeriaceae

X56153, Listeria monocytogenes, type sp., Listeriaceae

X98527, Listeria innocua, Listeriaceae

DQ065846, Listeria welshimeri, Listeriaceae

EU545982, Listeria marthii, Listeriaceae

FJ557241, Listeria rocourtiae, Listeriaceae

X56156, Brochothrix campestris, Listeriaceae

AY543023, Brochothrix thermosphacta, type sp., Listeriaceae

X98526, Listeria grayi, Listeriaceae

AY667496, Bacillus koreensis, Bacillaceae

AJ010478, Anoxybacillus pushchinoensis, type sp., Bacillaceae

FJ438370, Anoxybacillus tengchongensis, Bacillaceae

GQ153549, Anoxybacillus eryuanensis, Bacillaceae

HM016869, Anoxybacillus flavithermus subsp. yunnanensis, Bacillaceae

EF654664, Anoxybacillus mongoliensis, Bacillaceae

Z26932, Anoxybacillus flavithermus subsp. flavithermus, Bacillaceae

AM409184, Anoxybacillus bogrovensis, Bacillaceae

AY122325, Anoxybacillus gonensis, Bacillaceae

AY248711, Anoxybacillus kestanbolensis, Bacillaceae

AF001963, Anoxybacillus ayderensis, Bacillaceae

AF510985, Anoxybacillus kamchatkensis, Bacillaceae

EU326496, Anoxybacillus salavatliensis, Bacillaceae

AJ551330, Anoxybacillus contaminans, Bacillaceae

AB110008, Anoxybacillus voinovskiensis, Bacillaceae

AJ618979, Anoxybacillus amylolyticus, Bacillaceae

AJ879076, Anoxybacillus rupiensis, Bacillaceae

FN428691, Anoxybacillus tepidamans, Bacillaceae

FN428698, Anoxybacillus caldiproteolyticus, Bacillaceae

FR749979, Geobacillus gargensis, Bacillaceae

AY608935, Geobacillus thermocatenulatus, Bacillaceae

AY044055, Geobacillus lituanicus, Bacillaceae

AY312404, Geobacillus jurassicus, Bacillaceae

AF276304, Geobacillus uzenensis, Bacillaceae

AB021196, Geobacillus stearothermophilus, type sp., Bacillaceae

X60618, Geobacillus kaustophilus, Bacillaceae

Z26923, Geobacillus thermoleovorans, Bacillaceae

AJ293805, Geobacillus vulcani, Bacillaceae

AF276306, Geobacillus subterraneus, Bacillaceae

EU477773, Geobacillus thermodenitrificans subsp. calidus, Bacillaceae

AY608961, Geobacillus thermodenitrificans subsp. thermodenitrificans, Bacillaceae

FN428699, Caldibacillus debilis, type sp., Bacillaceae

FR749957, Geobacillus thermantarcticus, Bacillaceae

AY608981, Geobacillus thermoglucosidasius, Bacillaceae

AF326278, Geobacillus toebii, Bacillaceae

L09227, Saccharococcus thermophilus, type sp., Bacillaceae

AY605232, Bacillus alveayuensis, Bacillaceae

Z26930, Aeribacillus pallidus, type sp., Bacillaceae

AY397764, Bacillus thermolactis, Bacillaceae

L27478, Bacillus thermoamylovorans, Bacillaceae

U20385, Bacillus infernus, Bacillaceae

AB112727, Bacillus methanolicus, Bacillaceae

AJ504797, Bacillus aeolius, Bacillaceae

Z26935, Bacillus smithii, Bacillaceae

AY443039, Bacillus fordii, Bacillaceae

AY443038, Bacillus fortis, Bacillaceae

AY443036, Bacillus farraginis, Bacillaceae

AJ535638, Bacillus galactosidilyticus, Bacillaceae

AJ535639, Bacillus ruris, Bacillaceae

GU322908, Bacillus graminis, Bacillaceae

AB021189, Bacillus lentus, Bacillaceae

X77790, Bacillus badius, Bacillaceae

DQ870688, Bacillus canaveralius, Bacillaceae

Planococcaceae (75)

AJ314745, Planococcus antarcticus, Planococcaceae

X62173, Planococcus kocurii, Planococcaceae

EF079063, Planococcus donghaensis, Planococcaceae

JF742665, Planococcus halocryophilus, Planococcaceae

AY437845, Planomicrobium stackebrandtii, Planococcaceae

D55729, Planomicrobium okeanokoites, Planococcaceae

AF041791, Planomicrobium mcmeekinii, Planococcaceae

FJ265708, Planomicrobium flavidum, Planococcaceae

EU036220, Planomicrobium glaciei, Planococcaceae

AF029364, Planomicrobium alkanoclasticum, Planococcaceae

FJ765415, Planococcus salinarum, Planococcaceae

AJ314746, Planomicrobium psychrophilum, Planococcaceae

AF144750, Planomicrobium koreense, type sp., Planococcaceae

AJ697862, Planomicrobium chinense, Planococcaceae

AF500007, Planococcus maritimus, Planococcaceae

JF775504, Planococcus plakortidis, Planococcaceae

X62172, Planococcus citreus, type sp., Planococcaceae

AJ493659, Planococcus rifietoensis, Planococcaceae

AJ966515, Planococcus columbae, Planococcaceae

AJ544622, Planococcus maitriensis, Planococcaceae

X68415, Sporosarcina globispora, Planococcaceae

D16277, Sporosarcina psychrophila, Planococcaceae

AJ292316, Filibacter limicola, type sp., Planococcaceae

DQ073394, Sporosarcina soli, Planococcaceae

HQ676600, Sporosarcina pasteurii, Planococcaceae

FN298444, Sporosarcina contaminans, Planococcaceae

DQ073393, Sporosarcina koreensis, Planococcaceae

AB473560, Sporosarcina luteola, Planococcaceae

GU994085, Sporosarcina newyorkensis, Planococcaceae

AF202057, Sporosarcina ureae, type sp., Planococcaceae

AF202056, Sporosarcina aquimarina, Planococcaceae

AB243859, Sporosarcina saromensis, Planococcaceae

EF371374, Bacillus beijingensis, Bacillaceae

AM286423, Bhargavaea cecembensis, type sp., Planococcaceae

EF371375, Bacillus ginsengi, Bacillaceae

GU937385, Chungangia koreensis, type sp., Unclassified Bacillales

AB199591, Lysinibacillus boronitolerans, type sp., Bacillaceae

AJ628749, Lysinibacillus macroides, Bacillaceae

FJ477040, Lysinibacillus xylanilyticus, Bacillaceae

AJ310083, Lysinibacillus fusiformis, Bacillaceae

AJ310084, Lysinibacillus sphaericus, Bacillaceae

FM178866, Acetobacter pasteurianus subsp. ascendens, Acetobacteraceae

AB300598, Lysinibacillus parviboronicapiens, Bacillaceae

X70314, Caryophanon latum, type sp., Planococcaceae

X70315, Caryophanon tenue, Planococcaceae

AM773821, Bacillus cecembensis, Bacillaceae

AJ006086, Solibacillus silvestris, type sp., Unclassified Bacillales

AF526913, Bacillus odysseyi, Bacillaceae

DQ348071, Ureibacillus composti, Planococcaceae

DQ348072, Ureibacillus thermophilus, Planococcaceae

AY850379, Ureibacillus suwonensis, Planococcaceae

AJ276403, Ureibacillus terrenus, Planococcaceae

AB101594, Ureibacillus thermosphaericus, type sp., Planococcaceae

AB101594, Ureibacillus thermosphaericus, type sp., Planococcaceae

AY677116, Bacillus massiliensis, Bacillaceae

DQ465405, Bacillus decisifrondis, Bacillaceae

AJ277983, Psychrobacillus psychrotolerans, Bacillaceae

AJ277984, Psychrobacillus psychrodurans, Bacillaceae

AM980508, Psychrobacillus insolitus, type sp., Bacillaceae

GQ927308, Chryseomicrobium imtechense, type sp., Planococcaceae

AB271738, Kurthia gibsonii, Planococcaceae

AB271740, Kurthia zopfii, type sp., Planococcaceae

AJ605774, Kurthia sibirica, Planococcaceae

AJ627212, Viridibacillus arenosi, Bacillaceae

AJ627211, Viridibacillus arvi, type sp., Bacillaceae

AF169520, Viridibacillus neidei, Bacillaceae

AB271739, Rummeliibacillus pycnus, Unclassified Bacillales

DQ870754, Rummeliibacillus stabekisii, type sp., Unclassified Bacillales

AJ514408, Paenisporosarcina macmurdoensis, Planococcaceae

EF154512, Sporosarcina antarctica, Planococcaceae

DQ333897, Paenisporosarcina quisquiliarum, type sp., Planococcaceae

AY190535, Jeotgalibacillus campisalis, Planococcaceae

AJ237708, Jeotgalibacillus marinus, Planococcaceae

FR693626, Jeotgalibacillus soli, Planococcaceae

AF281158, Jeotgalibacillus alimentarius, type sp., Planococcaceae

EU874389, Jeotgalibacillus salarius, Planococcaceae

AB021192, Bacillus mycoides, Bacillaceae

AB021199, Bacillus weihenstephanensis, Bacillaceae

D16281, Bacillus thuringiensis, Bacillaceae

AE016877, Bacillus cereus, Bacillaceae

AB190217, Bacillus anthracis, Bacillaceae

AF013121, Bacillus pseudomycoides, Bacillaceae

AF483625, Bacillus aquimaris, Bacillaceae

AB099708, Bacillus vietnamensis, Bacillaceae

AF483624, Bacillus marisflavi, Bacillaceae

AY667495, Bacillus seohaeanensis, Bacillaceae

EF014452, Bacillus coahuilensis, Bacillaceae

EU861362, Bacillus horneckiae, Bacillaceae

FN995265, Bacillus kochii, Bacillaceae

FR666703, Bacillus purgationiresistans, Bacillaceae

X76447, Bacillus halmapalus, Bacillaceae

AB043865, Bacillus horikoshii, Bacillaceae

X76437, Bacillus cohnii, Bacillaceae

DQ374637, Bacillus acidiceler, Bacillaceae

AJ419629, Bacillus luciferensis, Bacillaceae

GU434676, Bacillus endoradicis, Bacillaceae

AB021185, Bacillus flexus, Bacillaceae

D16273, Bacillus megaterium, Bacillaceae

AB049195, Bacillus funiculus, Bacillaceae

AB245380, Bacillus panaciterrae, Bacillaceae

AB363732, Bacillus azotoformans, Bacillaceae

AJ316309, Bacillus muralis, Bacillaceae

AM747813, Brevibacterium frigoritolerans, Brevibacteriaceae

AJ439078, Bacillus simplex, Bacillaceae

EF206294, Bacillus butanolivorans, Bacillaceae

AB021195, Bacillus psychrosaccharolyticus, Bacillaceae

AB109209, Bacillus asahii, Bacillaceae

AJ542512, Bacillus novalis, Bacillaceae

AJ542509, Bacillus vireti, Bacillaceae

AJ542506, Bacillus drentensis, Bacillaceae

AJ542508, Bacillus bataviensis, Bacillaceae

AJ542513, Bacillus soli, Bacillaceae

AJ250056, Bacillus fumarioli, Bacillaceae

AB021194, Bacillus niacini, Bacillaceae

AB245377, Bacillus pocheonensis, Bacillaceae

X60615, Bacillus fastidiosus, Bacillaceae

AY608605, Bacillus litoralis, Bacillaceae

AY998119, Bacillus niabensis, Bacillaceae

AJ583158, Bacillus indicus, Bacillaceae

AY550276, Bacillus cibi, Bacillaceae

AY904033, Bacillus idriensis, Bacillaceae

AJ781029, Bacillus herbersteinensis, Bacillaceae

FM162181, Bacillus galliciensis, Bacillaceae

GQ925365, Bacillus luteolus, Bacillaceae

AJ627210, Bacillus humi, Bacillaceae

AY829448, Bacillus alkalitelluris, Bacillaceae

AB198719, Bacillus boroniphilus, Bacillaceae

AB262082, Bacillus selenatarsenatis, Bacillaceae

AF221061, Bacillus jeotgali, Bacillaceae

FR733689, Bacillus subterraneus, Bacillaceae

DQ371431, Bacillus thioparans, Bacillaceae

AJ717382, Bacillus foraminis, Bacillaceae

AY043084, Bacillus circulans, Bacillaceae

EU656111, Bacillus nealsonii, Bacillaceae

EU603328, Bacillus korlensis, Bacillaceae

AF071856, Bacillus siralis, Bacillaceae

X60611, Bacillus benzoevorans, Bacillaceae

D16268, Bacillus firmus, Bacillaceae

AY904032, Bacillus infantis, Bacillaceae

GQ292772, Bacillus oceanisediminis, Bacillaceae

EU364818, Falsibacillus pallidus, type sp., Bacillaceae

DQ280367, Bacillus kribbensis, Bacillaceae

Bacillaceae 1 (21)

AB255669, Bacillus amyloliquefaciens, Bacillaceae

GQ281299, Bacillus siamensis, Bacillaceae

EU194897, Bacillus methylotrophicus, Bacillaceae

AJ276351, Bacillus subtilis subsp. subtilis, type sp., Bacillaceae

EU138467, Bacillus subtilis subsp. inaquosorum, Bacillaceae

AB021191, Bacillus mojavensis, Bacillaceae

AM747812, Brevibacterium halotolerans, Brevibacteriaceae

AF074970, Bacillus subtilis subsp. spizizenii, Bacillaceae

HQ223107, Bacillus tequilensis, Bacillaceae

AB021198, Bacillus vallismortis, Bacillaceae

AJ831844, Bacillus aerophilus, Bacillaceae

AJ831841, Bacillus stratosphericus, Bacillaceae

AJ831842, Bacillus altitudinis, Bacillaceae

AY876289, Bacillus pumilus, Bacillaceae

AF234854, Bacillus safensis, Bacillaceae

AB021181, Bacillus atrophaeus, Bacillaceae

CP000560, Bacillus amyloliquefaciens subsp. plantarum, Bacillaceae

FN597644, Bacillus amyloliquefaciens subsp. amyloliquefaciens, Bacillaceae

AJ831843, Bacillus aerius, Bacillaceae

CP000002, Bacillus licheniformis , Bacillaceae

AF302118, Bacillus sonorensis, Bacillaceae

AB021182, Bacillus carboniphilus, Bacillaceae

AF295302, Bacillus endophyticus, Bacillaceae

AF295302, Bacillus endophyticus, Bacillaceae

FJ514932, Bacillus chungangensis, Bacillaceae

AM503357, Bacillus isabeliae, Bacillaceae

AB271752, Bacillus coagulans, Bacillaceae

EF379274, Bacillus acidiproducens, Bacillaceae

AY988598, Bacillus oleronius, Bacillaceae

U49078, Bacillus sporothermodurans, Bacillaceae

AF547209, Bacillus acidicola, Bacillaceae

AB245378, Bacillus ginsengihumi, Bacillaceae

AJ250318, Bacillus shackletonii, Bacillaceae

AY793550, Bacillus lehensis, Bacillaceae

AB188090, Bacillus oshimensis, Bacillaceae

AY258614, Bacillus patagoniensis, Bacillaceae

HM054474, Bacillus xiaoxiensis, Bacillaceae

X76440, Bacillus clausii, Bacillaceae

X76446, Bacillus gibsonii, Bacillaceae

AJ880003, Bacillus plakortidis, Bacillaceae

AJ316316, Bacillus murimartini, Bacillaceae

X76449, Bacillus pseudalcaliphilus, Bacillaceae

AB434284, Bacillus trypoxylicola, Bacillaceae

X76436, Bacillus alcalophilus, Bacillaceae

AY376312, Bacillus bogoriensis, Bacillaceae

AB043858, Bacillus akibai, Bacillaceae

AJ606037, Bacillus alkalisediminis, Bacillaceae

AB086897, Bacillus krulwichiae, Bacillaceae

DQ026060, Bacillus okhensis, Bacillaceae

AB043851, Bacillus wakoensis, Bacillaceae

AB043846, Bacillus hemicellulosilyticus, Bacillaceae

GQ292773, Bacillus nanhaiisediminis, Bacillaceae

DQ675454, Anaerobacillus alkalilacustris, Bacillaceae

AY032601, Bacillus macyae, Bacillaceae

AF064705, Anaerobacillus arseniciselenatis, type sp., Bacillaceae

EU143680, Anaerobacillus alkalidiazotrophicus, Bacillaceae

EF422411, Bacillus alkalinitrilicus, Bacillaceae

X76439, Bacillus pseudofirmus, Bacillaceae

EU621902, Bacillus marmarensis, Bacillaceae

AJ302709, Bacillus halodurans, Bacillaceae

AB047684, Bacillus okuhidensis, Bacillaceae

Sporolactobacillaceae (8)

AB101595, Sporolactobacillus inulinus, type sp., Sporolactobacillaceae

AJ634662, Sporolactobacillus terrae, Sporolactobacillaceae

AB374522, Sporolactobacillus putidus, Sporolactobacillaceae

EF581819, Sporolactobacillus vineae, Sporolactobacillaceae

AJ698860, Sporolactobacillus nakayamae subsp. racemicus, Sporolactobacillaceae

AJ634663, Sporolactobacillus nakayamae subsp. nakayamae, Sporolactobacillaceae

D16270, Sporolactobacillus laevolacticus, Sporolactobacillaceae

AB374517, Sporolactobacillus kofuensis, Sporolactobacillaceae

AJ551329, Bacillus gelatini, Bacillaceae

EU046268, Bacillus solisalsi, Bacillaceae

AY373018, Bacillus macauensis, Bacillaceae

EU939689, Bacillus rigui, Bacillaceae

AJ422145, Bacillus barbaricus, Bacillaceae

GU477780, Bacillus nanhaiensis, Bacillaceae

AJ606700, Bacillus arsenicus, Bacillaceae

AJ315075, Bacillus decolorationis, Bacillaceae

JN187498, Bacillus berkeleyi, Bacillaceae

AF541966, Bacillus hwajinpoensis, Bacillaceae

HM460885, Bacillus hemicentroti, Bacillaceae

AY228462, Bacillus algicola, Bacillaceae

AY603978, Bacillus taeanensis, Bacillaceae

Bacillaceae 2 (129)

EF486356, Halobacillus campisalis, Bacillaceae

EF612763, Halobacillus seohaensis, Bacillaceae

AF500003, Halobacillus salinus, Bacillaceae

FJ456889, Halobacillus salsuginis, Bacillaceae

AM295006, Halobacillus alkaliphilus, Bacillaceae

HE717023, Halobacillus halophilus, type sp., Bacillaceae

X94558, Halobacillus litoralis, Bacillaceae

AY881246, Halobacillus yeomjeoni, Bacillaceae

AY190534, Halobacillus locisalis, Bacillaceae

AB243865, Halobacillus faecis, Bacillaceae

AJ310149, Halobacillus trueperi, Bacillaceae

AY351389, Halobacillus aidingensis, Bacillaceae

AB195680, Halobacillus kuroshimensis, Bacillaceae

AB021188, Salimicrobium halophilum, Bacillaceae

DQ227305, Salimicrobium luteum, Bacillaceae

FJ357160, Salimicrobium flavidum, Bacillaceae

FR714935, Salimicrobium salexigens, Bacillaceae

X90834, Salimicrobium album, type sp., Bacillaceae

AB189298, Halobacillus profundi, Bacillaceae

AJ486874, Halobacillus karajensis, Bacillaceae

AY351395, Halobacillus dabanensis, Bacillaceae

DQ888316, Halobacillus mangrovi, Bacillaceae

AY553296, Pontibacillus chungwhensis, type sp., Bacillaceae

AY603977, Pontibacillus marinus, Bacillaceae

EU583724, Pontibacillus litoralis , Bacillaceae

EF533969, Pontibacillus yanchengensis, Bacillaceae

EU583728, Pontibacillus halophilus, Bacillaceae

AJ717299, Thalassobacillus devorans, type sp., Bacillaceae

FM864226, Thalassobacillus cyri, Bacillaceae

EU817571, Thalassobacillus hwangdonensis, Bacillaceae

FN690978, Thalassobacillus pellis, Bacillaceae

DQ989634, Sediminibacillus albus, Bacillaceae

AM905297, Sediminibacillus halophilus, type sp., Bacillaceae

AY616012, Virgibacillus koreensis, Bacillaceae

AB196783, Halolactibacillus halophilus, type sp., Bacillaceae

AB196784, Halolactibacillus miurensis, Bacillaceae

EF554593, Halolactibacillus alkaliphilus, Bacillaceae

FJ746578, Streptohalobacillus salinus, type sp., Bacillaceae

AF418603, Amphibacillus fermentum, Bacillaceae

EU135728, Paraliobacillus quinghaiensis, Bacillaceae

AB243866, Amphibacillus sediminis, Bacillaceae

FJ169626, Amphibacillus jilinensis, Bacillaceae

EU143681, Natronobacillus azotifigens, type sp., Bacillaceae

D82065, Amphibacillus xylanus, type sp., Bacillaceae

AF418602, Amphibacillus tropicus, Bacillaceae

AB087828, Paraliobacillus ryukyuensis, type sp., Bacillaceae

DQ664540, Gracilibacillus lacisalsi, Bacillaceae

FJ182214, Gracilibacillus thailandensis, Bacillaceae

EU784646, Gracilibacillus saliphilus, Bacillaceae

AM040716, Gracilibacillus orientalis, Bacillaceae

AB197126, Gracilibacillus boraciitolerans, Bacillaceae

HQ439902, Gracilibacillus kekensis, Bacillaceae

AF036922, Gracilibacillus halotolerans, type sp., Bacillaceae

AB101591, Gracilibacillus dipsosauri, Bacillaceae

EU709020, Gracilibacillus ureilyticus, Bacillaceae

EU135704, Gracilibacillus halophilus, Bacillaceae

EF520006, Gracilibacillus bigeumensis, Bacillaceae

DQ359731, Alkalibacillus halophilus, Bacillaceae

AY671976, Alkalibacillus salilacus, Bacillaceae

EU874387, Alkalibacillus flavidus, Bacillaceae

AB264528, Alkalibacillus silvisoli, Bacillaceae

AJ493661, Alkalibacillus filiformis, Bacillaceae

AJ238041, Alkalibacillus haloalkaliphilus, type sp., Bacillaceae

AB194046, Piscibacillus salipiscarius, type sp., Bacillaceae

FM864227, Piscibacillus halophilus, Bacillaceae

AM911047, Aquisalibacillus elongatus, type sp., Bacillaceae

AJ238042, Filobacillus milosensis, type sp., Bacillaceae

AY319933, Tenuibacillus multivorans, type sp., Bacillaceae

AB264529, Halalkalibacillus halophilus, type sp., Bacillaceae

FJ347755, Allobacillus halotolerans, type sp., Bacillaceae

AY321436, Salinibacillus aidingensis, type sp., Bacillaceae

AY321434, Salinibacillus kushneri, Bacillaceae

AM292417, Salirhabdus euzebyi, type sp., Bacillaceae

DQ519571, Terribacillus goriensis, Bacillaceae

AB243845, Terribacillus saccharophilus, type sp., Bacillaceae

AB243849, Terribacillus halophilus, Bacillaceae

FJ386524, Terribacillus aidingensis, Bacillaceae

AY321433, Lentibacillus halodurans, Bacillaceae

AY667493, Lentibacillus salarius, Bacillaceae

EF601571, Lentibacillus salinarum, Bacillaceae

AY057394, Lentibacillus salicampi, type sp., Bacillaceae

FN376846, Lentibacillus persicus, Bacillaceae

AB231905, Lentibacillus kapialis, Bacillaceae

FJ182050, Lentibacillus jeotgali, Bacillaceae

AB191345, Lentibacillus halophilus, Bacillaceae

AB127980, Lentibacillus juripiscarius, Bacillaceae

AY762976, Lentibacillus salis, Bacillaceae

AY667497, Lentibacillus lacisalsi, Bacillaceae

AY121439, Virgibacillus kekensis, Bacillaceae

EF675742, Virgibacillus arcticus, Bacillaceae

AJ316302, Virgibacillus carmonensis, Bacillaceae

AJ315056, Virgibacillus necropolis, Bacillaceae

FJ357159, Virgibacillus byunsanensis, Bacillaceae

FM205010, Virgibacillus salinus, Bacillaceae

FJ746573, Virgibacillus subterraneus, Bacillaceae

AB365482, Virgibacillus siamensis, Bacillaceae

AY543169, Virgibacillus halodenitrificans, Bacillaceae

AY121430, Virgibacillus sediminis, Bacillaceae

DQ664543, Virgibacillus xinjiangensis, Bacillaceae

Y11603, Virgibacillus salexigens, Bacillaceae

AJ009793, Virgibacillus marismortui, Bacillaceae

AB197851, Virgibacillus salarius, Bacillaceae

DQ139839, Virgibacillus olivae, Bacillaceae

AB366005, Oceanobacillus kapialis, Bacillaceae

AJ315060, Oceanobacillus picturae, Bacillaceae

EF101168, Virgibacillus chiguensis, Bacillaceae

AY822043, Virgibacillus dokdonensis, Bacillaceae

D16275, Virgibacillus pantothenticus, type sp., Bacillaceae

AJ012667, Virgibacillus proomii, Bacillaceae

GU202420, Virgibacillus alimentarius, Bacillaceae

GU586225, Virgibacillus campisalis, Bacillaceae

AJ640134, Oceanobacillus oncorhynchi subsp. incaldanensis, Bacillaceae

EU817570, Oceanobacillus locisalsi, Bacillaceae

AB188089, Oceanobacillus oncorhynchi subsp. oncorhynchi, Bacillaceae

EU709018, Oceanobacillus neutriphilus, Bacillaceae

AB473561, Oceanobacillus sojae, Bacillaceae

AB010863, Oceanobacillus iheyensis, type sp., Bacillaceae

GU784860, Oceanobacillus kimchii, Bacillaceae

DQ298074, Oceanobacillus chironomi, Bacillaceae

DQ386635, Oceanobacillus profundus, Bacillaceae

AB275883, Oceanobacillus caeni, Bacillaceae

Z26939, Bacillus thermocloacae, Bacillaceae

AM114102, Paucisalibacillus globulus, type sp., Bacillaceae

Y13066, Ornithinibacillus bavariensis, type sp., Bacillaceae

AF326365, Ornithinibacillus californiensis, Bacillaceae

FN597064, Ornithinibacillus contaminans, Bacillaceae

AB107894, Cerasibacillus quisquiliarum, type sp., Bacillaceae

EU213011, Virgibacillus soli, Bacillaceae

AB243851, Virgibacillus halophilus, Bacillaceae

AB021193, Pullulanibacillus naganoensis, type sp., Sporolactobacillaceae

AB231786, Tuberibacillus calidus, type sp., Sporolactobacillaceae

DQ115802, Bacillus qingdaonensis, Bacillaceae

AM982516, Bacillus halochares, Bacillaceae

DQ504377, Bacillus aidingensis, Bacillaceae

AY667494, Bacillus salarius, Bacillaceae

HQ433452, Bacillus iranensis, Bacillaceae

FM244839, Bacillus persepolensis, Bacillaceae

AB449106, Geomicrobium halophilum, Unclassified Bacillales

AB449109, Natribacillus halophilus, type sp., Bacillaceae

EU581835, Salsuginibacillus halophilus, Bacillaceae

AM492160, Salsuginibacillus kocurii, type sp., Bacillaceae

AY817493, Marinococcus halotolerans, Bacillaceae

FJ214659, Marinococcus luteus, Bacillaceae

X90835, Marinococcus halophilus, type sp., Bacillaceae

DQ168584, Sinobaca qinghaiensis, type sp., Sporolactobacillaceae

FJ825145, Bacillus beveridgei, Bacillaceae

AF064704, Bacillus selenitireducens, Bacillaceae

EU925618, Bacillus neizhouensis, Bacillaceae

X76445, Bacillus agaradhaerens, Bacillaceae

AM492159, Bacillus chagannorensis, Bacillaceae

GU583651, Bacillus daliensis, Bacillaceae

AJ493660, Bacillus saliphilus, Bacillaceae

FR714930, Bacillus locisalis, Bacillaceae

AJ605773, Bacillus aurantiacus, Bacillaceae

Z48306, Bacillus vedderi, Bacillaceae

AB043852, Bacillus cellulosilyticus, Bacillaceae

X76444, Bacillus clarkii, Bacillaceae

AB292819, Bacillus polygoni, Bacillaceae

D87035, Bacillus horti, Bacillaceae

AB043864, Bacillus mannanilyticus, Bacillaceae

AM050346, Vulcanibacillus modesticaldus, type sp., Bacillaceae

Paenibacillaceae 1 (155)

D85396, Paenibacillus amylolyticus, Paenibacillaceae

EU558281, Paenibacillus xylanexedens, Paenibacillaceae

EU558281, Paenibacillus xylanexedens, Paenibacillaceae

EU558284, Paenibacillus tundrae, Paenibacillaceae

EU179327, Paenibacillus taichungensis, Paenibacillaceae

AB045094, Paenibacillus pabuli, Paenibacillaceae

AY427832, Paenibacillus xylanilyticus, Paenibacillaceae

AJ716019, Paenibacillus barcinonensis, Paenibacillaceae

AB073192, Paenibacillus illinoisensis, Paenibacillaceae

AY323608, Paenibacillus massiliensis, Paenibacillaceae

AB245384, Paenibacillus panacisoli, Paenibacillaceae

EF212893, Paenibacillus provencensis, Paenibacillaceae

EF212892, Paenibacillus urinalis, Paenibacillaceae

AF273740, Paenibacillus brasilensis, Paenibacillaceae

AF391124, Paenibacillus terrae, Paenibacillaceae

D16276, Paenibacillus polymyxa, type sp., Paenibacillaceae

AF391123, Paenibacillus kribbensis, Paenibacillaceae

AJ320494, Paenibacillus peoriae, Paenibacillaceae

AJ271157, Paenibacillus jamilae, Paenibacillaceae

EU741036, Paenibacillus hunanensis, Paenibacillaceae

AB073189, Paenibacillus glucanolyticus, Paenibacillaceae

AB073188, Paenibacillus lautus, Paenibacillaceae

AY257868, Paenibacillus lactis, Paenibacillaceae

AF021924, Paenibacillus campinasensis, Paenibacillaceae

EU888513, Paenibacillus purispatii, Paenibacillaceae

FN556467, Paenibacillus uliginis, Paenibacillaceae

AJ318909, Paenibacillus anaericanus, Paenibacillaceae

GQ355277, Paenibacillus sediminis, Paenibacillaceae

AB248087, Paenibacillus terrigena, Paenibacillaceae

GQ423056, Paenibacillus pini, Paenibacillaceae

AF378694, Paenibacillus turicensis, Paenibacillaceae

AJ575658, Paenibacillus cineris, Paenibacillaceae

AY751754, Paenibacillus rhizosphaerae, Paenibacillaceae

AY208751, Paenibacillus favisporus, Paenibacillaceae

FJ178001, Paenibacillus cellulositrophicus, Paenibacillaceae

AJ272249, Paenibacillus azoreducens, Paenibacillaceae

AB073194, Paenibacillus chibensis, Paenibacillaceae

AJ250317, Paenibacillus cookii, Paenibacillaceae

AY741810, Paenibacillus motobuensis, Paenibacillaceae

AY167814, Paenibacillus barengoltzii, Paenibacillaceae

EU977789, Paenibacillus phoenicis, Paenibacillaceae

AY323612, Paenibacillus timonensis, Paenibacillaceae

AY323609, Paenibacillus sanguinis, Paenibacillaceae

GU187433, Paenibacillus puldeungensis, Paenibacillaceae

AB073196, Paenibacillus macerans, Paenibacillaceae

EU081509, Paenibacillus konsidensis, Paenibacillaceae

GQ303568, Fontibacillus panacisegetis, Paenibacillaceae

DQ023221, Fontibacillus aquaticus, type sp., Paenibacillaceae

DQ453131, Paenibacillus fonticola, Paenibacillaceae

AY847463, Paenibacillus woosongensis, Paenibacillaceae

AF480935, Paenibacillus nematophilus, Paenibacillaceae

GQ214052, Cohnella luojiensis, Paenibacillaceae

HQ315787, Cohnella arctica, Paenibacillaceae

GU181267, Cohnella suwonensis, Paenibacillaceae

GU181266, Cohnella soli, Paenibacillaceae

EU014872, Cohnella phaseoli, Paenibacillaceae

HQ704069, Cohnella cellulosilytica, Paenibacillaceae

AF433165, Cohnella hongkongensis, Paenibacillaceae

FJ001842, Cohnella terrae, Paenibacillaceae

FJ001841, Cohnella xylanilytica, Paenibacillaceae

AJ971483, Cohnella thermotolerans, type sp., Paenibacillaceae

EU912527, Cohnella damuensis, Paenibacillaceae

FJ001840, Cohnella thailandensis, Paenibacillaceae

AB271056, Cohnella panacarvi, Paenibacillaceae

EF368008, Cohnella yongneupensis , Paenibacillaceae

DQ459874, Cohnella laeviribosi, Paenibacillaceae

AB362828, Cohnella fontinalis, Paenibacillaceae

EU046270, Saccharibacillus kuerlensis, Paenibacillaceae

EU014873, Saccharibacillus sacchari, type sp., Paenibacillaceae

X60625, Paenibacillus macquariensis subsp. macquariensis, Paenibacillaceae

AB360546, Paenibacillus macquariensis subsp. defensor, Paenibacillaceae

AJ605292, Paenibacillus antarcticus, Paenibacillaceae

EU815294, Paenibacillus glacialis, Paenibacillaceae

AJ633647, Paenibacillus wynnii, Paenibacillaceae

AJ223990, Paenibacillus odorifer, Paenibacillaceae

AJ011322, Paenibacillus borealis, Paenibacillaceae

DQ338443, Paenibacillus forsythiae, Paenibacillaceae

DQ338444, Paenibacillus sabinae, Paenibacillaceae

DQ471303, Paenibacillus zanthoxyli, Paenibacillaceae

X77846, Paenibacillus durus, Paenibacillaceae

GQ985395, Paenibacillus sophorae, Paenibacillaceae

AJ316013, Paenibacillus stellifer, Paenibacillaceae

EU257201, Paenibacillus riograndensis, Paenibacillaceae

DQ358736, Paenibacillus sonchi, Paenibacillaceae

AJ223987, Paenibacillus graminis, Paenibacillaceae

GQ985393, Paenibacillus jilunlii, Paenibacillaceae

AB073199, Paenibacillus lentimorbus, Paenibacillaceae

AB073198, Paenibacillus popilliae, Paenibacillaceae

AB073197, Paenibacillus thiaminolyticus, Paenibacillaceae

AY359885, Paenibacillus dendritiformis, Paenibacillaceae

AJ320491, Paenibacillus alvei, Paenibacillaceae

AB073201, Paenibacillus apiarius, Paenibacillaceae

AY884046, Paenibacillus assamensis, Paenibacillaceae

DQ890521, Paenibacillus taiwanensis, Paenibacillaceae

AM411528, Paenibacillus humicus, Paenibacillaceae

AY167820, Paenibacillus pasadenensis, Paenibacillaceae

EU939687, Paenibacillus wooponensis, Paenibacillaceae

GQ423057, Paenibacillus pinihumi, Paenibacillaceae

EF125184, Paenibacillus tarimensis, Paenibacillaceae

AF290916, Paenibacillus daejeonensis, Paenibacillaceae

AB042938, Paenibacillus glycanilyticus, Paenibacillaceae

FJ820995, Paenibacillus prosopidis, Paenibacillaceae

GQ383922, Paenibacillus algorifonticola, Paenibacillaceae

AY839868, Paenibacillus xinjiangensis, Paenibacillaceae

EU099594, Paenibacillus castaneae, Paenibacillaceae

DQ407282, Paenibacillus cellulosilyticus, Paenibacillaceae

AB073202, Paenibacillus curdlanolyticus, Paenibacillaceae

AB073363, Paenibacillus kobensis, Paenibacillaceae

AY598818, Paenibacillus phyllosphaerae, Paenibacillaceae

GU124597, Paenibacillus sacheonensis, Paenibacillaceae

AF537343, Paenibacillus mendelii, Paenibacillaceae

DQ291142, Paenibacillus sepulcri, Paenibacillaceae

AB295646, Paenibacillus montaniterrae, Paenibacillaceae

AB295645, Paenibacillus siamensis, Paenibacillaceae

AF237682, Paenibacillus granivorans, Paenibacillaceae

EU400621, Paenibacillus camelliae, Paenibacillaceae

AB295647, Paenibacillus septentrionalis, Paenibacillaceae

AB265206, Paenibacillus nanensis, Paenibacillaceae

AB265205, Paenibacillus thailandensis, Paenibacillaceae

AJ345023, Paenibacillus agaridevorans, Paenibacillaceae

GU187432, Paenibacillus chungangensis, Paenibacillaceae

FN394513, Paenibacillus sputi, Paenibacillaceae

AY960748, Paenibacillus alkaliterrae, Paenibacillaceae

AY839867, Paenibacillus harenae, Paenibacillaceae

AJ345020, Paenibacillus agarexedens, Paenibacillaceae

EF626690, Paenibacillus contaminans, Paenibacillaceae

FN293173, Paenibacillus residui, Paenibacillaceae

EF452662, Paenibacillus ginsengihumi, Paenibacillaceae

EU391156, Paenibacillus pueri, Paenibacillaceae

AF353681, Paenibacillus naphthalenovorans, Paenibacillaceae

AB073203, Paenibacillus validus, Paenibacillaceae

AB495094, Paenibacillus xylanisolvens, Paenibacillaceae

AF006076, Paenibacillus edaphicus, Paenibacillaceae

AF164345, Paenibacillus chinjuensis, Paenibacillaceae

GQ423055, Paenibacillus filicis, Paenibacillaceae

AF006077, Paenibacillus mucilaginosus, Paenibacillaceae

EU939688, Paenibacillus rigui, Paenibacillaceae

DQ309072, Paenibacillus soli, Paenibacillaceae

AY116665, Paenibacillus ehimensis, Paenibacillaceae

AF130254, Paenibacillus koreensis, Paenibacillaceae

AY090110, Paenibacillus elgii, Paenibacillaceae

FJ719490, Paenibacillus tianmuensis, Paenibacillaceae

AB073362, Paenibacillus alginolyticus, Paenibacillaceae

D82064, Paenibacillus chondroitinus, Paenibacillaceae

AB245386, Paenibacillus pocheonensis, Paenibacillaceae

EU570250, Paenibacillus aestuarii , Paenibacillaceae

EU391157, Paenibacillus pectinilyticus, Paenibacillaceae

FN689718, Paenibacillus chartarius, Paenibacillaceae

AB045100, Paenibacillus chitinolyticus, Paenibacillaceae

AY839866, Paenibacillus gansuensis, Paenibacillaceae

AB271057, Paenibacillus ginsengarvi, Paenibacillaceae

AB179866, Paenibacillus hodogayensis, Paenibacillaceae

AB041720, Paenibacillus koleovorans, Paenibacillaceae

AY530294, Paenibacillus larvae, Paenibacillaceae

AB254031, Thermobacillus composti, Paenibacillaceae

AJ005795, Thermobacillus xylanilyticus, type sp., Paenibacillaceae

Alicyclobacillaceae (20)

AJ133633, Alicyclobacillus hesperidum, Alicyclobacillaceae

AB264020, Alicyclobacillus sacchari, Alicyclobacillaceae

AB076660, Alicyclobacillus acidiphilus, Alicyclobacillaceae

AB042057, Alicyclobacillus acidoterrestris, Alicyclobacillaceae

AB264021, Alicyclobacillus fastidiosus, Alicyclobacillaceae

AB059674, Alicyclobacillus acidocaldarius subsp. rittmannii, Alicyclobacillaceae

AB084128, Alicyclobacillus sendaiensis, Alicyclobacillaceae

AJ496806, Alicyclobacillus acidocaldarius subsp. acidocaldarius, type sp., Alicyclobacillaceae

AY425985, Alicyclobacillus vulcanalis, Alicyclobacillaceae

AB264025, Alicyclobacillus macrosporangiidus, Alicyclobacillaceae

AB042059, Alicyclobacillus cycloheptanicus, Alicyclobacillaceae

AB264022, Alicyclobacillus kakegawensis, Alicyclobacillaceae

AB264024, Alicyclobacillus shizuokensis, Alicyclobacillaceae

AB042055, Alicyclobacillus herbarius, Alicyclobacillaceae

AB089843, Alicyclobacillus disulfidooxidans, Alicyclobacillaceae

Z21979, Alicyclobacillus tolerans, Alicyclobacillaceae

AB264026, Alicyclobacillus contaminans, Alicyclobacillaceae

AB089840, Alicyclobacillus pomorum, Alicyclobacillaceae

EU137838, Alicyclobacillus ferrooxydans, Alicyclobacillaceae

FM179383, Alicyclobacillus aeris, Alicyclobacillaceae

AB245375, Tumebacillus ginsengisoli, Alicyclobacillaceae

DQ444975, Tumebacillus permanentifrigoris, type sp., Alicyclobacillaceae

AJ564766, Alicyclobacillus pohliae, Alicyclobacillaceae

FN552009, Microaerobacter geothermalis, type sp., Bacillaceae

AJ242495, Thermicanus aegyptius, type sp., Unclassified Bacillales

AY753654, Caldalkalibacillus thermarum, type sp., Bacillaceae

DQ221694, Caldalkalibacillus uzonensis, Bacillaceae

Thermoactinomycetaceae (18)

AM940019, Desmospora activa, type sp., Thermoactinomycetaceae

JN006758, Marininema mesophilum, type sp., Thermoactinomycetaceae

HQ383683, Melghirimyces algeriensis, type sp., Thermoactinomycetaceae

FN665656, Kroppenstedtia eburnea, type sp., Thermoactinomycetaceae

AB239532, Mechercharimyces asporophorigenens, Thermoactinomycetaceae

AB239529, Mechercharimyces mesophilus, type sp., Thermoactinomycetaceae

AF138735, Seinonella peptonophila, type sp., Thermoactinomycetaceae

AB049939, Shimazuella kribbensis, type sp., Thermoactinomycetaceae

AJ251779, Laceyella sacchari, type sp., Thermoactinomycetaceae

FJ426598, Laceyella tengchongensis, Thermoactinomycetaceae

FJ422144, Laceyella sediminis, Thermoactinomycetaceae

AF138736, Laceyella putida, Thermoactinomycetaceae

AF138734, Thermoactinomyces intermedius, Thermoactinomycetaceae

AF138739, Thermoactinomyces vulgaris, type sp., Thermoactinomycetaceae

AF138733, Thermoflavimicrobium dichotomicum, type sp., Thermoactinomycetaceae

AB088362, Planifilum fulgidum, Thermoactinomycetaceae

DQ119659, Planifilum yunnanense, Thermoactinomycetaceae

AB088364, Planifilum fimeticola, type sp., Thermoactinomycetaceae

AB042060, Bacillus schlegelii, Bacillaceae

CP002017, Kyrpidia tusciae, type sp., Alicyclobacillaceae

AB250968, Calditerricola satsumensis, type sp., Bacillaceae

AB308475, Calditerricola yamamurae, Bacillaceae

Clostridia (609)

Clostridiaceae 1 (111)

AB018184, Eubacterium multiforme, Eubacteriaceae

AB018185, Eubacterium nitritogenes, Eubacteriaceae

AB018183, Eubacterium budayi, Eubacteriaceae

X68174, Clostridium baratii, Clostridiaceae

AB161367, Clostridium sardiniense, Clostridiaceae

AB540985, Eubacterium moniliforme, Eubacteriaceae

AJ420008, Clostridium colicanis, Clostridiaceae

X68183, Clostridium aurantibutyricum, Clostridiaceae

X71850, Clostridium chartatabidum, Clostridiaceae

X97432, Clostridium vincentii, Clostridiaceae

X75907, Clostridium paraputrificum, Clostridiaceae

AJ458418, Clostridium diolis, Clostridiaceae

Y18171, Clostridium roseum, Clostridiaceae

X68179, Clostridium beijerinckii, Clostridiaceae

U16122, Clostridium saccharoperbutylacetonicum, Clostridiaceae

U16147, Clostridium saccharobutylicum, Clostridiaceae

U16147, Clostridium saccharobutylicum, Clostridiaceae

X71857, Clostridium puniceum, Clostridiaceae

AJ458420, Clostridium butyricum, type sp., Clostridiaceae

AY228334, Clostridium chromiireducens, Clostridiaceae

AF092548, Clostridium gasigenes, Clostridiaceae

AJ276992, Clostridium uliginosum, Clostridiaceae

U51843, Clostridium chauvoei, Clostridiaceae

U59278, Clostridium septicum, Clostridiaceae

X98395, Clostridium isatidis, Clostridiaceae

M59091, Clostridium carnis, Clostridiaceae

Y18174, Clostridium tertium, Clostridiaceae

Y18175, Clostridium sartagoforme, Clostridiaceae

X77844, Clostridium celatum, Clostridiaceae

Y18176, Clostridium disporicum, Clostridiaceae

X76745, Clostridium quinii, Clostridiaceae

X76650, Sarcina maxima, Clostridiaceae

X76649, Sarcina ventriculi, type sp., Clostridiaceae

FR733677, Eubacterium tarantellae, Eubacteriaceae

CP000246, Clostridium perfringens , Clostridiaceae

AF069742, Clostridium frigidicarnis, Clostridiaceae

DQ196623, Clostridium hydrogeniformans, Clostridiaceae

X76740, Clostridium intestinale, Clostridiaceae

AF127023, Clostridium algidicarnis, Clostridiaceae

AF127024, Clostridium putrefaciens, Clostridiaceae

M59088, Clostridium fallax, Clostridiaceae

Y18189, Anaerobacter polyendosporus, type sp., Clostridiaceae

EU037903, Clostridium amylolyticum, Clostridiaceae

AB542932, Clostridium cadaveris, Clostridiaceae

FR749900, Acetivibrio multivorans, Ruminococcaceae

DQ852338, Proteiniclasticum ruminis, type sp., Clostridiaceae

DQ196621, Clostridium cavendishii, Clostridiaceae

X71849, Clostridium cellulovorans, Clostridiaceae

CP000673, Clostridium kluyveri, Clostridiaceae

FR733688, Clostridium ljungdahlii, Clostridiaceae

M59113, Clostridium tyrobutyricum, Clostridiaceae

DQ114945, Clostridium aciditolerans, Clostridiaceae

AM261414, Clostridium nitrophenolicum, Clostridiaceae

FR733710, Clostridium carboxidivorans, Clostridiaceae

Y18813, Clostridium drakei, Clostridiaceae

X77835, Clostridium magnum, Clostridiaceae

FR870440, Clostridium pasteurianum, Clostridiaceae

EU816420, Clostridium arbusti, Clostridiaceae

AJ237756, Clostridium acidisoli, Clostridiaceae

AJ237755, Clostridium akagii, Clostridiaceae

AE001437, Clostridium acetobutylicum , Clostridiaceae

AF270501, Clostridium felsineum, Clostridiaceae

X73439, Clostridium collagenovorans, Clostridiaceae

AY858804, Clostridium lundense, Clostridiaceae

DQ241819, Clostridium tetanomorphum, Clostridiaceae

FR749893, Clostridium malenominatum, Clostridiaceae

AJ506115, Clostridium estertheticum subsp. laramiense, Clostridiaceae

AJ506116, Clostridium frigoris, Clostridiaceae

S46734, Clostridium estertheticum subsp. estertheticum, Clostridiaceae

AJ506118, Clostridium lacusfryxellense, Clostridiaceae

AJ297443, Clostridium psychrophilum, Clostridiaceae

AJ506119, Clostridium bowmanii, Clostridiaceae

AY117755, Clostridium algoriphilum, Clostridiaceae

DQ296031, Clostridium tagluense, Clostridiaceae

EF199998, Clostridium sulfidigenes, Clostridiaceae

AY024332, Clostridium thiosulfatireducens, Clostridiaceae

AF241844, Clostridium subterminale, Clostridiaceae

X68316, Clostridium argentinense, Clostridiaceae

AM114453, Clostridium schirmacherense, Clostridiaceae

X96736, Clostridium pascui, Clostridiaceae

AF156796, Clostridium peptidivorans, Clostridiaceae

M59093, Clostridium cochlearium, Clostridiaceae

X74770, Clostridium tetani, Clostridiaceae

X79862, Clostridium acetireducens, Clostridiaceae

AB037910, Clostridium haemolyticum, Clostridiaceae

AB045606, Clostridium novyi, Clostridiaceae

X72869, Clostridium thermopalmarium, Clostridiaceae

X72868, Clostridium thermobutyricum, Clostridiaceae

DQ126679, Clostridium aestuarii, Clostridiaceae

X75272, Clostridium grantii, Clostridiaceae

AY903294, Clostridium ganghwense, Clostridiaceae

X76744, Clostridium homopropionicum, Clostridiaceae

FR733681, Ilyobacter delafieldii, Fusobacteriaceae

L37585, Clostridium botulinum, Clostridiaceae

AY533380, Eubacterium combesii, Eubacteriaceae

X68189, Clostridium sporogenes, Clostridiaceae

EF197795, Clostridium tepidiprofundi, Clostridiaceae

FR870444, Clostridium limosum, Clostridiaceae

X73448, Clostridium proteolyticum, Clostridiaceae

AB566416, Clostridium histolyticum, Clostridiaceae

X77838, Oxobacter pfennigii, type sp., Clostridiaceae

X75788, Caloramator indicus, Clostridiaceae

X99238, Thermobrachium celere, type sp., Clostridiaceae

X90488, Caloramator proteoclasticus, Clostridiaceae

AF104215, Caloramator coolhaasii, Clostridiaceae

EU409943, Caloramator australicus, Clostridiaceae

L09187, Caloramator fervidus, type sp., Clostridiaceae

GU723692, Caloramator mitchellensis, Clostridiaceae

FM244718, Caloramator boliviensis, Clostridiaceae

AF181848, Caloramator viterbiensis, Clostridiaceae

FJ481102, Fervidicella metallireducens, type sp., Clostridiaceae

Y18179, Clostridium cylindrosporum, Clostridiaceae

FR749965, Thermohydrogenium kirishiense, type sp., Syntrophomonadaceae

FR870449, Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterales

X93359, Thermoanaerobacterium aotearoense, Thermoanaerobacterales

FM999998, Thermoanaerobacterium thermostercoris, Thermoanaerobacterales

L09171, Thermoanaerobacterium thermosulfurigenes, type sp., Thermoanaerobacterales

L09172, Thermoanaerobacterium xylanolyticum, Thermoanaerobacterales

L09169, Thermoanaerobacterium saccharolyticum, Thermoanaerobacterales

AY350594, Thermoanaerobacterium aciditolerans, Thermoanaerobacterales

JF262044, Caloribacterium cisternae, type sp., Thermoanaerobacteraceae

U40229, Caldanaerobius polysaccharolyticus, Thermoanaerobacteraceae

U75993, Caldanaerobius zeae, Thermoanaerobacteraceae

EF507903, Caldanaerobius fijiensis, type sp., Thermoanaerobacteraceae

AY331143, Mahella australiensis, type sp., Thermoanaerobacterales

Lachnospiraceae (103)

Y18184, Clostridium indolis, Clostridiaceae

AF067965, Clostridium methoxybenzovorans, Clostridiaceae

AY353957, Clostridium amygdalinum, Clostridiaceae

Y18185, Clostridium saccharolyticum, Clostridiaceae

AB075772, Clostridium sphenoides, Clostridiaceae

Y11568, Desulfotomaculum guttoideum, Peptococcaceae

X71848, Clostridium celerecrescens, Clostridiaceae

X76163, Clostridium aerotolerans, Clostridiaceae

X76739, Clostridium xylanolyticum, Clostridiaceae

AF092549, Clostridium algidixylanolyticum, Clostridiaceae

AJ311620, Clostridium hathewayi, Clostridiaceae

DQ279736, Clostridium aldenense, Clostridiaceae

DQ279737, Clostridium citroniae, Clostridiaceae

M59089, Clostridium clostridioforme, Clostridiaceae

AJ582080, Clostridium asparagiforme, Clostridiaceae

EF564277, Clostridium lavalense, Clostridiaceae

AJ508452, Clostridium bolteae, Clostridiaceae

M59112, Clostridium symbiosum, Clostridiaceae

HQ223106, Fusobacterium naviforme, Fusobacteriaceae

DQ377947, Moryella indoligenes, type sp., Lachnospiraceae

AY323228, Oribacterium sinus, type sp., Lachnospiraceae

AJ428553, Butyrivibrio hungatei, Lachnospiraceae

U37378, Butyrivibrio proteoclasticus, Lachnospiraceae

U41172, Butyrivibrio fibrisolvens, type sp., Lachnospiraceae

L04165, Clostridium aminophilum, Clostridiaceae

AB525414, Eubacterium saburreum, Eubacteriaceae

X87152, Johnsonella ignava, type sp., Lachnospiraceae

ABWN01000012, Butyrivibrio crossotus, Lachnospiraceae

X71860, Eubacterium cellulosolvens, Eubacteriaceae

AF202264, Syntrophococcus sucromutans, type sp., Lachnospiraceae

AJ505973, Marvinbryantia formatexigens, type sp., Lachnospiraceae

L76602, Ruminococcus lactaris, Ruminococcaceae

L76604, Ruminococcus torques, Ruminococcaceae

FJ611794, Ruminococcus faecis, Ruminococcaceae

AB233029, Clostridium glycyrrhizinilyticum, Clostridiaceae

EF031542, Coprococcus comes, Lachnospiraceae

X73443, Clostridium nexile, Clostridiaceae

AB023973, Clostridium hylemonae, Clostridiaceae

AF262238, Clostridium scindens, Clostridiaceae

L34619, Dorea formicigenerans, type sp., Lachnospiraceae

AJ132842, Dorea longicatena, Lachnospiraceae

AF445239, Hespellia porcina, Lachnospiraceae

AF445264, Hespellia stercorisuis, type sp., Lachnospiraceae

FR749917, Clostridium oroticum, Clostridiaceae

FR749936, Eubacterium fissicatena, Eubacteriaceae

FR749946, Eubacterium contortum, Eubacteriaceae

X94967, Ruminococcus gnavus, Ruminococcaceae

DQ100449, Lactonifactor longoviformis, type sp., Clostridiaceae

EF529620, Ruminococcus gauvreauii, Ruminococcaceae

AJ133124, Blautia luti, Unclassified Clostridiales

X85101, Ruminococcus obeum, Ruminococcaceae

EF036467, Blautia wexlerae, Unclassified Clostridiales

AB439724, Blautia glucerasea, Unclassified Clostridiales

X94965, Blautia schinkii, Unclassified Clostridiales

AB571656, Blautia coccoides, Unclassified Clostridiales

L76595, Blautia producta, Unclassified Clostridiales

AB534168, Blautia hansenii, Unclassified Clostridiales

HM626177, Blautia stercoris, Unclassified Clostridiales

X95624, Blautia hydrogenotrophica, Unclassified Clostridiales

AF445285, Robinsoniella peoriensis, type sp., Lachnospiraceae

GU233441, Roseburia cecicola, type sp., Lachnospiraceae

AJ270482, Roseburia hominis, Lachnospiraceae

AJ312385, Roseburia intestinalis, Lachnospiraceae

AY305310, Roseburia faecis, Lachnospiraceae

AJ270473, Roseburia inulinivorans, Lachnospiraceae

L34627, Eubacterium rectale, Eubacteriaceae

AF298663, Lachnobacterium bovis, type sp., Lachnospiraceae

FR733672, Eubacterium oxidoreducens, Eubacteriaceae

AF399956, Shuttleworthia satelles, type sp., Lachnospiraceae

X95893, Pseudobutyrivibrio ruminis, type sp., Lachnospiraceae

AJ428548, Pseudobutyrivibrio xylanivorans, Lachnospiraceae

DQ497994, Bacteroides galacturonicus, Bacteroidaceae

GU269544, Lactobacillus rogosae, Lactobacillaceae

L34420, Eubacterium eligens, Eubacteriaceae

FR733699, Lachnospira multipara, type sp., Lachnospiraceae

DQ925472, Howardella ureilytica, type sp., Unclassified Clostridiales

AF126687, Clostridium fimetarium, Clostridiaceae

M59083, Acetitomaculum ruminis, type sp., Lachnospiraceae

AB038359, Coprococcus catus, Lachnospiraceae

ABVQ01000036, Bacteroides pectinophilus, Bacteroidaceae

X87151, Catonella morbi, type sp., Lachnospiraceae

AJ270487, Anaerostipes caccae, type sp., Lachnospiraceae

FR749932, Eubacterium hadrum, Eubacteriaceae

FJ947528, Anaerostipes butyraticus, Lachnospiraceae

FR749897, Acetivibrio ethanolgignens, Ruminococcaceae

GU269550, Eubacterium uniforme, Eubacteriaceae

L34421, Eubacterium ventriosum, Eubacteriaceae

AJ272036, Parasporobacterium paucivorans, type sp., Lachnospiraceae

AF116854, Sporobacterium olearium, type sp., Lachnospiraceae

AY494606, Clostridium jejuense, Clostridiaceae

AF116920, Clostridium xylanovorans, Clostridiaceae

X73436, Clostridium aminovalericum, Clostridiaceae

CP000885, Clostridium phytofermentans, Clostridiaceae

X71853, Clostridium populeti, Clostridiaceae

L34418, Clostridium herbivorans, Clostridiaceae

X77839, Clostridium polysaccharolyticum, Clostridiaceae

AY534872, Anaerosporobacter mobilis, type sp., Clostridiaceae

L34628, Eubacterium xylanophilum, Eubacteriaceae

L34621, Eubacterium hallii, Eubacteriaceae

AB008552, Eubacterium ruminantium, Eubacteriaceae

EF031543, Coprococcus eutactus, type sp., Lachnospiraceae

EF382648, Cellulosilyticum ruminicola, Lachnospiraceae

X71851, Cellulosilyticum lentocellum, Lachnospiraceae

HQ020487, Defluviitalea saccharophila, type sp., Defluviitaleaceae

GQ922846, Natranaerovirga pectinivora, Unclassified Clostridiales

GQ863487, Natranaerovirga hydrolytica, type sp., Unclassified Clostridiales

X76746, Clostridium neopropionicum, Clostridiaceae

X77841, Clostridium propionicum, Clostridiaceae

AY033434, Clostridium lactatifermentans, Clostridiaceae

X76748, Clostridium colinum, Clostridiaceae

DQ117465, Gracilibacter thermotolerans, type sp., Gracilibacteraceae

AB186360, Lutispora thermophila, type sp., Clostridiaceae

FR749980, Acetomicrobium faecale, Bacteroidaceae

AB450762, Caldicoprobacter oshimai, type sp., Caldicoprobacteraceae

GU216701, Caldicoprobacter algeriensis, Caldicoprobacteraceae

AB490809, Christensenella minuta, type sp., Christensenellaceae

Peptostreptococcaceae (29)

AY326462, Peptostreptococcus anaerobius, type sp., Peptostreptococcaceae

DQ160208, Peptostreptococcus stomatis, Peptostreptococcaceae

AY167952, Peptostreptococcus russellii, Peptostreptococcaceae

AB023970, Clostridium hiranonis, Clostridiaceae

AB075770, Clostridium difficile, Clostridiaceae

FR733662, Clostridium mangenotii, Clostridiaceae

X73447, Clostridium irregulare, Clostridiaceae

X76750, Clostridium glycolicum, Clostridiaceae

FR733682, Clostridium mayombei, Clostridiaceae

AY438672, Clostridium bartlettii, Clostridiaceae

M59107, Clostridium lituseburense, Clostridiaceae

AB075769, Clostridium bifermentans, Clostridiaceae

AB542933, Clostridium ghonii, Clostridiaceae

AB075771, Clostridium sordellii, Clostridiaceae

FR749984, Eubacterium tenue, Eubacteriaceae

AY245527, Tepidibacter formicigenes, Peptostreptococcaceae

AY158079, Tepidibacter thalassicus, type sp., Peptostreptococcaceae

GQ231514, Tepidibacter mesophilus, Peptostreptococcaceae

Z69929, Clostridium paradoxum, Clostridiaceae

FR749954, Clostridium thermoalcaliphilum, Clostridiaceae

AY682207, Sporacetigenium mesophilum, type sp., Peptostreptococcaceae

GU269551, Eubacterium yurii subsp. yurii, Eubacteriaceae

AY533381, Eubacterium yurii subsp. margaretiae, Eubacteriaceae

AY533382, Eubacterium yurii subsp. schtitka, Eubacteriaceae

AF537211, Filifactor villosus, type sp., Peptostreptococcaceae

AF450134, Proteocatella sphenisci, type sp., Unclassified Clostridiales

GU562448, Acetoanaerobium noterae, type sp., Unclassified Clostridiales

X77845, Clostridium litorale, Clostridiaceae

AF071416, Eubacterium acidaminophilum, Eubacteriaceae

Clostridiaceae 2 (15)

Y18183, Clostridium aceticum, Clostridiaceae

X77836, Clostridium formicaceticum, Clostridiaceae

AB201750, Anaerovirgula multivorans, type sp., Unclassified Clostridiales

EU878275, Natronincola ferrireducens, Clostridiaceae

EF382661, Natronincola peptidivorans, Clostridiaceae

Y16716, Natronincola histidinovorans, type sp., Clostridiaceae

AF373919, Tindallia californiensis, Clostridiaceae

Y15626, Tindallia magadiensis, type sp., Clostridiaceae

DQ234901, Tindallia texcoconensis, Clostridiaceae

AF522323, Anoxynatronum sibiricum, type sp., Clostridiaceae

DQ250645, Alkaliphilus oremlandii, Clostridiaceae

EU627628, Alkaliphilus halophilus, Clostridiaceae

AF467248, Alkaliphilus crotonatoxidans, Clostridiaceae

EF382660, Alkaliphilus peptidifermentans, Clostridiaceae

AB037677, Alkaliphilus transvaalensis, type sp., Clostridiaceae

Incertae Sedis XIII (14)

U13037, Eubacterium minutum, Eubacteriaceae

Z36274, Eubacterium nodatum, Eubacteriaceae

AJ310135, Eubacterium pyruvativorans, Eubacteriaceae

U13039, Eubacterium infirmum, Eubacteriaceae

AJ006963, Eubacterium sulci, Eubacteriaceae

AB037874, Mogibacterium diversum, Unclassified Clostridiales

AB037875, Mogibacterium neglectum, Unclassified Clostridiales

AB021702, Mogibacterium vescum, Unclassified Clostridiales

Z36296, Mogibacterium timidum, Unclassified Clostridiales

AB021701, Mogibacterium pumilum, type sp., Unclassified Clostridiales

Z36272, Eubacterium brachy, Eubacteriaceae

AJ251215, Anaerovorax odorimutans, type sp., Unclassified Clostridiales

U65987, Eubacterium saphenum, Eubacteriaceae

AF016691, Acidaminobacter hydrogenoformans, type sp., Unclassified Clostridiales

Incertae Sedis XII (3)

AF050099, Fusibacter paucivorans, type sp., Unclassified Clostridiales

FR851323, Fusibacter tunisiensis, Unclassified Clostridiales

AY272039, Guggenheimella bovis, type sp., Unclassified Clostridiales

Clostridiaceae 4 (5)

DQ643978, Geosporobacter subterraneus, type sp., Clostridiaceae

EU443727, Thermotalea metallivorans, type sp., Clostridiaceae

AJ320233, Caminicella sporogenes, type sp., Clostridiaceae

AF458779, Clostridium caminithermale, Clostridiaceae

X77837, Clostridium halophilum, Clostridiaceae

FR749894, Clostridium purinilyticum, Clostridiaceae

L34612, Eubacterium angustum, Eubacteriaceae

EF116488, Proteiniborus ethanoligenes, type sp., Unclassified Clostridiales

Incertae Sedis XI (35)

AF542232, Anaerococcus prevotii, type sp., Unclassified Clostridiales

AF542234, Anaerococcus tetradius, Unclassified Clostridiales

Y07841, Anaerococcus octavius, Unclassified Clostridiales

AF542233, Anaerococcus lactolyticus, Unclassified Clostridiales

DQ911243, Anaerococcus murdochii, Unclassified Clostridiales

ABXA01000039, Anaerococcus hydrogenalis, Unclassified Clostridiales

AF542229, Anaerococcus vaginalis, Unclassified Clostridiales

EU483153, Murdochiella asaccharolytica, type sp., Unclassified Clostridiales

X69837, Helcococcus kunzii, type sp., Unclassified Clostridiales

Y16279, Helcococcus ovis, Unclassified Clostridiales

AJ579914, Helcococcus sueciensis, Unclassified Clostridiales

AF542227, Finegoldia magna, type sp., Unclassified Clostridiales

AB038361, Gallicola barnesae, type sp., Unclassified Clostridiales

AY323523, Parvimonas micra, type sp., Unclassified Clostridiales

DQ911241, Peptoniphilus gorbachii, Unclassified Clostridiales

Y07839, Peptoniphilus harei, Unclassified Clostridiales

DQ911242, Peptoniphilus olsenii, Unclassified Clostridiales

AF542230, Peptoniphilus lacrimalis, Unclassified Clostridiales

AB298735, Anaerosphaera aminiphila, type sp., Peptostreptococcaceae

AF542228, Peptoniphilus asaccharolyticus, type sp., Unclassified Clostridiales

AY153431, Peptoniphilus indolicus, Unclassified Clostridiales

GU440754, Peptoniphilus methioninivorax, Unclassified Clostridiales

Y07840, Peptoniphilus ivorii, Unclassified Clostridiales

AB547639, Bacteroides coagulans, Bacteroidaceae

EF522948, Tepidimicrobium xylanilyticum, Clostridiaceae

AY656718, Tepidimicrobium ferriphilum, type sp., Clostridiaceae

Z69293, Clostridium ultunense, Clostridiaceae

X80227, Tissierella creatinophila, Unclassified Clostridiales

X80832, Tissierella praeacuta, type sp., Unclassified Clostridiales

FR749955, Tissierella creatinini, Unclassified Clostridiales

AY353956, Soehngenia saccharolytica, type sp., Unclassified Clostridiales

AF358114, Sporanaerobacter acetigenes, type sp., Unclassified Clostridiales

L11305, Sedimentibacter hydroxybenzoicus, type sp., Unclassified Clostridiales

AJ404680, Sedimentibacter saalensis, Unclassified Clostridiales

AB218661, Dethiosulfatibacter aminovorans, type sp., Unclassified Clostridiales

Clostridiaceae 3 (4)

EF026082, Clostridiisalibacter paucivorans, type sp., Clostridiaceae

EU567322, Sporosalibacterium faouarense, type sp., Clostridiaceae

AF113543, Thermohalobacter berrensis, type sp., Clostridiaceae

AJ272422, Caloranaerobacter azorensis, type sp., Clostridiaceae

AY176772, Garciella nitratireducens, type sp., Eubacteriaceae

Eubacteriaceae (16)

X96958, Acetobacterium paludosum, Eubacteriaceae

AJ297449, Acetobacterium tundrae, Eubacteriaceae

X96960, Acetobacterium bakii, Eubacteriaceae

X96959, Acetobacterium fimetarium, Eubacteriaceae

X96956, Acetobacterium carbinolicum, Eubacteriaceae

X96957, Acetobacterium malicum, Eubacteriaceae

X96954, Acetobacterium woodii, type sp., Eubacteriaceae

X96955, Acetobacterium wieringae, Eubacteriaceae

AF073898, Eubacterium aggregans, Eubacteriaceae

M23927, Eubacterium barkeri, Eubacteriaceae

AB036759, Pseudoramibacter alactolyticus, type sp., Eubacteriaceae

X96961, Eubacterium callanderi, Eubacteriaceae

M59120, Eubacterium limosum, type sp., Eubacteriaceae

AY312403, Alkalibacter saccharofermentans, type sp., Eubacteriaceae

FJ438469, Alkalibaculum bacchi, type sp., Eubacteriaceae

AJ518871, Anaerofustis stercorihominis, type sp., Eubacteriaceae

Incertae Sedis XIV (3)

AY064217, Anaerobranca californiensis, Unclassified Clostridiales

EF190921, Anaerobranca zavarzinii, Unclassified Clostridiales

AF203703, Anaerobranca gottschalkii, Unclassified Clostridiales

Ruminococcaceae (48)

AJ305238, Clostridium leptum, Clostridiaceae

X66002, Clostridium sporosphaeroides, Clostridiaceae

L76600, Ruminococcus bromii, Ruminococcaceae

HM037995, Eubacterium coprostanoligenes, Eubacteriaceae

L09177, Clostridium cellulosi, Clostridiaceae

AY295777, Ethanoligenens harbinense, type sp., Ruminococcaceae

GU562446, Gemmiger formicilis, type sp., Hyphomicrobiaceae

AJ518869, Subdoligranulum variabile, type sp., Ruminococcaceae

AJ413954, Faecalibacterium prausnitzii, type sp., Ruminococcaceae

X98011, Anaerofilum agile, Ruminococcaceae

X97852, Anaerofilum pentosovorans, type sp., Ruminococcaceae

AJ315980, Anaerotruncus colihominis, type sp., Ruminococcaceae

EU158190, Hydrogenoanaerobacterium saccharovorans, type sp., Ruminococcaceae

AY487928, Acetanaerobacterium elongatum, type sp., Ruminococcaceae

L76596, Ruminococcus callidus, Ruminococcaceae

L76603, Ruminococcus flavefaciens, type sp., Ruminococcaceae

AJ515913, Ruminococcus champanellensis, Ruminococcaceae

L76598, Ruminococcus albus, Ruminococcaceae

Y18181, Clostridium methylpentosum, Clostridiaceae

L34625, Eubacterium siraeum, Eubacteriaceae

AY136666, Pseudoflavonifractor capillosus, type sp., Unclassified Clostridiales

AY724678, Flavonifractor plautii, type sp., Unclassified Clostridiales

X81125, Clostridium viride, Clostridiaceae

AB238598, Oscillibacter valericigenes, type sp., Oscillospiraceae

AF167711, Papillibacter cinnamivorans, type sp., Ruminococcaceae

Z49863, Sporobacter termitidis, type sp., Ruminococcaceae

EU410376, Butyricicoccus pullicaecorum, type sp., Clostridiaceae

L34618, Eubacterium desmolans, Eubacteriaceae

X71847, Clostridium cellulolyticum, Clostridiaceae

X71852, Clostridium papyrosolvens, Clostridiaceae

FR749966, Clostridium hungatei, Clostridiaceae

AB267266, Clostridium sufflavum, Clostridiaceae

X71856, Clostridium cellobioparum, Clostridiaceae

FR733680, Clostridium termitidis, Clostridiaceae

Y18180, Clostridium thermosuccinogenes, Clostridiaceae

L35517, Bacteroides cellulosolvens, Bacteroidaceae

L35516, Acetivibrio cellulolyticus, type sp., Ruminococcaceae

X71846, Clostridium aldrichii, Clostridiaceae

AY959944, Clostridium alkalicellulosi, Clostridiaceae

AB186359, Clostridium clariflavum, Clostridiaceae

CP000568, Clostridium thermocellum , Clostridiaceae

AB125279, Clostridium straminisolvens, Clostridiaceae

AY949857, Saccharofermentans acetigenes, type sp., Clostridiaceae

AJ575187, Fastidiosipila sanguinis, type sp., Ruminococcaceae

X72870, Clostridium stercorarium subsp. thermolacticum, Clostridiaceae

AF266461, Clostridium stercorarium subsp. leptospartum, Clostridiaceae

AJ310082, Clostridium stercorarium subsp. stercorarium, Clostridiaceae

AB221372, Clostridium caenicola, Clostridiaceae

AJ251214, Pelospora glutarica, type sp., Syntrophomonadaceae

AB274039, Syntrophomonas palmitatica, Syntrophomonadaceae

AY290767, Syntrophomonas curvata, Syntrophomonadaceae

AF022249, Syntrophomonas sapovorans, Syntrophomonadaceae

DQ666175, Syntrophomonas wolfei subsp. saponavida, Syntrophomonadaceae

DQ898277, Syntrophomonas zehnderi, Syntrophomonadaceae

DQ288691, Syntrophomonas cellicola, Syntrophomonadaceae

CP000448, Syntrophomonas wolfei subsp. wolfei, type sp., Syntrophomonadaceae

AY536889, Syntrophomonas erecta, Syntrophomonadaceae

X99980, Thermosyntropha lipolytica, type sp., Syntrophomonadaceae

HM807481, Thermosyntropha tengcongensis, Syntrophomonadaceae

AB021305, Syntrophothermus lipocalidus, type sp., Syntrophomonadaceae

AY538171, Desulfitibacter alkalitolerans, type sp., Peptococcaceae

FJ788525, Desulfitispora alkaliphila, type sp., Peptococcaceae

Veillonellaceae (73)

GQ422716, Selenomonas artemidis, Veillonellaceae

AF287799, Selenomonas noxia, Veillonellaceae

AF287803, Selenomonas flueggei, Veillonellaceae

AF287802, Selenomonas infelix, Veillonellaceae

AF287801, Selenomonas dianae, Veillonellaceae

AJ010963, Centipeda periodontii, type sp., Veillonellaceae

Y09434, Schwartzia succinivorans, type sp., Veillonellaceae

AF479674, Mitsuokella jalaludinii, Veillonellaceae

X81878, Mitsuokella multacida, type sp., Veillonellaceae

M62702, Selenomonas ruminantium subsp. ruminantium, Veillonellaceae

AB003379, Selenomonas ruminantium subsp. lactilytica, Veillonellaceae

EF139191, Selenomonas bovis, Veillonellaceae

AF001901, Selenomonas lipolytica, Veillonellaceae

AF287793, Selenomonas sputigena, type sp., Veillonellaceae

AF287793, Selenomonas sputigena, type sp., Veillonellaceae

AB034191, Anaerovibrio lipolyticus, type sp., Veillonellaceae

AB300988, Megamonas funiformis, Veillonellaceae

EU346729, Megamonas rupellensis, Veillonellaceae

AJ420107, Megamonas hypermegale, type sp., Veillonellaceae

FR870446, Pectinatus cerevisiiphilus, type sp., Veillonellaceae

DQ223731, Pectinatus haikarae, Veillonellaceae

AY428574, Pectinatus portalensis, Veillonellaceae

Y18190, Propionispira arboris, type sp., Veillonellaceae

DQ217599, Zymophilus raffinosivorans, type sp., Veillonellaceae

AJ010960, Anaerosinus glycerini, type sp., Veillonellaceae

AJ010962, Dendrosporobacter quercicolus, type sp., Veillonellaceae

AJ508927, Propionispora hippei, Veillonellaceae

AJ279802, Propionispora vibrioides, type sp., Veillonellaceae

DQ145536, Pelosinus fermentans, type sp., Veillonellaceae

AM258975, Pelosinus propionicus, type sp., Veillonellaceae

JF750003, Pelosinus defluvii, Veillonellaceae

AJ010964, Acetonema longum, type sp., Veillonellaceae

AF071415, Anaeromusa acidaminophila, type sp., Veillonellaceae

AJ010961, Anaeroarcus burkinensis, type sp., Veillonellaceae

AF548373, Allisonella histaminiformans, type sp., Veillonellaceae

X82500, Dialister pneumosintes, type sp., Veillonellaceae

AY162469, Dialister invisus, Veillonellaceae

AB370249, Dialister succinatiphilus, Veillonellaceae

AY850119, Dialister propionicifaciens, Veillonellaceae

AF473837, Dialister micraerophilus, Veillonellaceae

FJ715930, Negativicoccus succinicivorans, type sp., Veillonellaceae

DQ223730, Megasphaera paucivorans, Veillonellaceae

DQ223729, Megasphaera sueciensis, Veillonellaceae

L37040, Megasphaera cerevisiae, Veillonellaceae

U95027, Megasphaera elsdenii, type sp., Veillonellaceae

AF338413, Anaeroglobus geminatus, type sp., Veillonellaceae

AF473834, Megasphaera micronuciformis, Veillonellaceae

EF185167, Veillonella denticariosi, Veillonellaceae

AY514996, Veillonella rodentium, Veillonellaceae

AF439641, Veillonella atypica, Veillonellaceae

AY995767, Veillonella parvula, type sp., Veillonellaceae

EF108443, Veillonella rogosae, Veillonellaceae

AF439639, Veillonella dispar, Veillonellaceae

AY355140, Veillonella caviae, Veillonellaceae

AF473836, Veillonella montpellierensis, Veillonellaceae

AF186072, Veillonella criceti, Veillonellaceae

AY355138, Veillonella ratti, Veillonellaceae

EU096495, Veillonella magna, Veillonellaceae

AAWL01000022, Thermosinus carboxydivorans, type sp., Veillonellaceae

FJ169187, Sporolituus thermophilus, type sp., Veillonellaceae

FR749939, Sporomusa paucivorans, Veillonellaceae

AJ279801, Sporomusa sphaeroides, type sp., Veillonellaceae

AJ279798, Sporomusa acidovorans, Veillonellaceae

AJ279799, Sporomusa malonica, Veillonellaceae

AJ279800, Sporomusa ovata, Veillonellaceae

Y09976, Sporomusa silvacetica, Veillonellaceae

AJ506191, Sporomusa aerivorans, Veillonellaceae

AM158322, Sporomusa rhizae, Veillonellaceae

X72865, Phascolarctobacterium faecium, type sp., Acidaminococcaceae

X81137, Succiniclasticum ruminis, type sp., Acidaminococcaceae

AB490811, Phascolarctobacterium succinatutens, Acidaminococcaceae

X78017, Acidaminococcus fermentans, type sp., Acidaminococcaceae

AF473835, Acidaminococcus intestini, Acidaminococcaceae

AJ006980, Succinispira mobilis, type sp., Acidaminococcaceae

Halobacteroidaceae (15)

L37423, Halobacteroides elegans, Halobacteroidaceae

Y14212, Halanaerobacter salinarius, Halobacteroidaceae

X89075, Halanaerobacter lacunarum, Halobacteroidaceae

GU265900, Halanaerobacter jeridensis, Halobacteroidaceae

X89074, Halobacteroides halobius, type sp., Halobacteroidaceae

EU327343, Halanaerobaculum tunisiense, type sp., Halobacteroidaceae

AY014858, Halonatronum saccharophilum, type sp., Halobacteroidaceae

AF152595, Orenia sivashensis, Halobacteroidaceae

X89073, Orenia marismortui, type sp., Halobacteroidaceae

Y18485, Orenia salinaria, Halobacteroidaceae

X95817, Natroniella acetigena, type sp., Halobacteroidaceae

GU452711, Natroniella sulfidigena, Halobacteroidaceae

AF310247, Selenihalanaerobacter shriftii, type sp., Halobacteroidaceae

HQ828140, Fuchsiella alkaliacetigena, type sp., Halobacteroidaceae

CP002105, Acetohalobium arabaticum, type sp., Halobacteroidaceae

Halanaerobiaceae (12)

X89071, Halanaerobium acetethylicum, Halanaerobiaceae

U86446, Halanaerobium kushneri, Halanaerobiaceae

AB022034, Halanaerobium praevalens, type sp., Halanaerobiaceae

X89070, Halanaerobium saccharolyticum subsp. senegalense, Halanaerobiaceae

X89069, Halanaerobium saccharolyticum subsp. saccharolyticum, Halanaerobiaceae

U76632, Halanaerobium congolense, Halanaerobiaceae

AB023308, Halanaerobium fermentans, Halanaerobiaceae

L39787, Halanaerobium lacusrosei, Halanaerobiaceae

L22890, Halanaerobium salsuginis, Halanaerobiaceae

X89072, Halocella cellulosilytica, type sp., Halanaerobiaceae

AY965613, Halarsenatibacter silvermanii, type sp., Halanaerobiaceae

L22016, Halothermothrix orenii, type sp., Halanaerobiaceae

Cyanobacteria (9)

AB115964, Crinalium epipsammum, type sp., Oscillatoriales

HM748317, Iphinoe spelaeobios, type sp., Stigonematales

HM748318, Loriellopsis cavernicola, type sp., Stigonematales

Y18791, Halospirulina tapeticola, type sp., Oscillatoriales

EF126149, Rubidibacter lacunae, type sp., Chroococcales

AB045960, Planktothricoides raciborskii, type sp., Oscillatoriales

Prochlorococcaceae (2)

AF180967, Prochlorococcus marinus subsp. pastoris, Prochlorococcaceae

AE017126, Prochlorococcus marinus subsp. marinus , type sp., Prochlorococcaceae

AM709625, Prochlorothrix hollandica, type sp., Prochlorotrichaceae

HM038000, Vampirovibrio chlorellavorus, type sp., Bdellovibrionaceae

AY603000, Thermincola carboxydiphila, type sp., Peptococcaceae

AY631277, Thermincola ferriacetica, Peptococcaceae

Y11571, Desulfosporosinus hippei, Peptococcaceae

AF076527, Desulfosporosinus meridiei, Peptococcaceae

AJ493051, Desulfosporosinus auripigmenti, Peptococcaceae

AJ582757, Desulfosporosinus lacus, Peptococcaceae

DQ117470, Desulfosporosinus youngiae, Peptococcaceae

FJ951625, Desulfosporosinus acidiphilus, Peptococcaceae

FJ951625, Desulfosporosinus acidiphilus, Peptococcaceae

Y11570, Desulfosporosinus orientis, type sp., Peptococcaceae

CP001336, Desulfitobacterium hafniense, Peptococcaceae

CP001336, Desulfitobacterium hafniense, Peptococcaceae

CP001336, Desulfitobacterium hafniense, Peptococcaceae

U68528, Desulfitobacterium chlororespirans, Peptococcaceae

L28946, Desulfitobacterium dehalogenans, type sp., Peptococcaceae

AF297871, Desulfitobacterium metallireducens, Peptococcaceae

EU711071, Desulfitobacterium aromaticivorans , Peptococcaceae

U84497, Dehalobacter restrictus, type sp., Peptococcaceae

Heliobacteriaceae (8)

AB100837, Heliobacterium gestii, Heliobacteriaceae

CP000930, Heliobacterium modesticaldum, Heliobacteriaceae

AF249678, Heliobacterium sulfidophilum, Heliobacteriaceae

AF249679, Heliobacterium undosum, Heliobacteriaceae

AB100835, Heliobacillus mobilis, type sp., Heliobacteriaceae

M11212, Heliobacterium chlorum, type sp., Heliobacteriaceae

AF249680, Heliorestis baculata, Heliobacteriaceae

AF079102, Heliorestis daurensis, type sp., Heliobacteriaceae

Peptococcaceae 1 (2)

Y18214, Desulfonispora thiosulfatigenes, type sp., Peptococcaceae

X55797, Peptococcus niger, type sp., Peptococcaceae

AY084078, Desulfotomaculum solfataricum, Peptococcaceae

DQ208688, Desulfotomaculum thermosubterraneum, Peptococcaceae

Y11569, Desulfotomaculum kuznetsovii, Peptococcaceae

M96665, Desulfotomaculum australicum, Peptococcaceae

U33455, Desulfotomaculum thermocisternum, Peptococcaceae

DQ208689, Desulfovirgula thermocuniculi, type sp., Thermoanaerobacteraceae

AJ294429, Desulfotomaculum thermobenzoicum subsp. thermobenzoicum, Peptococcaceae

AY007190, Desulfotomaculum thermobenzoicum subsp. thermosyntrophicum, Peptococcaceae

Y11573, Desulfotomaculum thermoacetoxidans, Peptococcaceae

AY548776, Desulfurispora thermophila, type sp., Peptococcaceae

AB232785, Pelotomaculum isophthalicicum, Peptococcaceae

AB091323, Pelotomaculum terephthalicicum, Peptococcaceae

AY327251, Cryptanaerobacter phenolicus, type sp., Peptococcaceae

X91170, Pelotomaculum schinkii, Peptococcaceae

AB154390, Pelotomaculum propionicicum, Peptococcaceae

AB035723, Pelotomaculum thermopropionicum, type sp., Peptococcaceae

Y14845, Sporotomaculum hydroxybenzoicum, type sp., Peptococcaceae

AB076610, Sporotomaculum syntrophicum, Peptococcaceae

AF168365, Desulfotomaculum sapomandens, Peptococcaceae

Z26315, Desulfotomaculum thermosapovorans, Peptococcaceae

Y11576, Desulfotomaculum gibsoniae, Peptococcaceae

AY548778, Desulfotomaculum alcoholivorax, Peptococcaceae

DQ148942, Desulfotomaculum arcticum, Peptococcaceae

AJ294428, Desulfotomaculum geothermicum, Peptococcaceae

AY961415, Desulfotomaculum carboxydivorans, Peptococcaceae

X62176, Desulfotomaculum nigrificans, type sp., Peptococcaceae

EF081293, Desulfotomaculum hydrothermale, Peptococcaceae

AF053929, Desulfotomaculum putei, Peptococcaceae

X98407, Desulfotomaculum aeronauticum, Peptococcaceae

Y11572, Desulfotomaculum ruminis, Peptococcaceae

AF097024, Desulfotomaculum alkaliphilum, Peptococcaceae

U88891, Desulfotomaculum halophilum, Peptococcaceae

Y11566, Desulfotomaculum acetoxidans, Peptococcaceae

Incertae Sedis XVI (3)

AY673988, Carboxydocella sporoproducens, Unclassified Clostridiales

AY061974, Carboxydocella thermautotrophica, type sp., Unclassified Clostridiales

GU584133, Carboxydocella manganica, Unclassified Clostridiales

Thermolithobacteria (2)

DQ095862, Thermolithobacter carboxydivorans, Thermolithobacteraceae

AF282253, Thermolithobacter ferrireducens, type sp., Thermolithobacteraceae

Natranaerobiaceae (3)

EU338490, Natranaerobius trueperi, Natranaerobiaceae

EU338489, Natronovirga wadinatrunensis, type sp., Natranaerobiaceae

DQ417202, Natranaerobius thermophilus, type sp., Natranaerobiaceae

EF422412, Dethiobacter alkaliphilus, type sp., Syntrophomonadaceae

EF679212, Sulfobacillus benefaciens, Unclassified Clostridiales

AB089844, Sulfobacillus thermosulfidooxidans, type sp., Unclassified Clostridiales

AY079150, Sulfobacillus sibiricus, Unclassified Clostridiales

DQ124681, Sulfobacillus thermotolerans, Unclassified Clostridiales

AB089842, Sulfobacillus acidophilus, Unclassified Clostridiales

AP006840, Symbiobacterium thermophilum , type sp., Unclassified Clostridiales

AF321086, Gelria glutamica, type sp., Thermoanaerobacteraceae

U76363, Carboxydothermus ferrireducens, Thermoanaerobacteraceae

CP000141, Carboxydothermus hydrogenoformans, type sp., Thermoanaerobacteraceae

EF542810, Carboxydothermus siderophilus, Thermoanaerobacteraceae

GQ324698, Carboxydothermus islandicus, Thermoanaerobacteraceae

AB573433, Carboxydothermus pertinax, Thermoanaerobacteraceae

AB573432, Carboxydothermus pertinax, Thermoanaerobacteraceae

AB573431, Carboxydothermus pertinax, Thermoanaerobacteraceae

AB573434, Carboxydothermus pertinax, Thermoanaerobacteraceae

EU386162, Syntrophaceticus schinkii, type sp., Thermoanaerobacterales

AB020336, Thermacetogenium phaeum, type sp., Thermoanaerobacteraceae

U82327, Moorella glycerini, Thermoanaerobacteraceae

AF487538, Moorella mulderi, Thermoanaerobacteraceae

GQ872425, Moorella humiferrea, Thermoanaerobacteraceae

L09168, Moorella thermoautotrophica, Thermoanaerobacteraceae

AY656675, Moorella thermoacetica, type sp., Thermoanaerobacteraceae

Thermoanaerobacteraceae (24)

L09163, Thermoanaerobacter acetoethylicus, Thermoanaerobacteraceae

L09162, Thermoanaerobacter ethanolicus, type sp., Thermoanaerobacteraceae

CP000924, Thermoanaerobacter pseudethanolicus, Thermoanaerobacteraceae

L09161, Thermoanaerobacter thermohydrosulfuricus, Thermoanaerobacteraceae

Y16940, Thermoanaerobacter sulfurophilus, Thermoanaerobacteraceae

X92513, Thermoanaerobacter wiegelii, Thermoanaerobacteraceae

AF120479, Thermoanaerobacter siderophilus, Thermoanaerobacteraceae

L09160, Thermoanaerobacter kivui, Thermoanaerobacteraceae

L09166, Thermoanaerobacter brockii subsp. finnii, Thermoanaerobacteraceae

L09165, Thermoanaerobacter brockii subsp. brockii, Thermoanaerobacteraceae

U14330, Thermoanaerobacter brockii subsp. lactiethylicus, Thermoanaerobacteraceae

CP000924, Thermoanaerobacter pseudethanolicus, Thermoanaerobacteraceae

Y11279, Thermoanaerobacter mathranii subsp. mathranii, Thermoanaerobacteraceae

AY701758, Thermoanaerobacter mathranii subsp. alimentarius, Thermoanaerobacteraceae

AJ250846, Thermoanaerobacter italicus, Thermoanaerobacteraceae

L09167, Thermoanaerobacter thermocopriae, Thermoanaerobacteraceae

AF234164, Thermoanaerobacter sulfurigignens, Thermoanaerobacteraceae

EF530067, Thermoanaerobacter uzonensis, Thermoanaerobacteraceae

ABXP01000185, Caldanaerobacter subterraneus subsp. pacificus, Thermoanaerobacteraceae

AE008691, Caldanaerobacter subterraneus subsp. tengcongensis, Thermoanaerobacteraceae

AF212925, Caldanaerobacter subterraneus subsp. yonseiensis, Thermoanaerobacteraceae

EF195126, Caldanaerobacter uzonensis, Thermoanaerobacteraceae

CP001785, Ammonifex degensii, type sp., Thermoanaerobacteraceae

EF554597, Ammonifex thiophilus, Thermoanaerobacteraceae

EF530069, Caldanaerovirga acetigignens, type sp., Thermoanaerobacterales

EU370564, Thermovorax subterraneus, type sp., Thermoanaerobacterales

EU443728, Fervidicola ferrireducens, type sp., Syntrophomonadaceae

AY703479, Thermosediminibacter litoriperuensis, Thermoanaerobacterales

AY703478, Thermosediminibacter oceani, type sp., Thermoanaerobacterales

AY033493, Thermovenabulum ferriorganovorum, type sp., Thermoanaerobacterales

EU443729, Thermovenabulum gondwanense, Thermoanaerobacterales

AB106353, Tepidanaerobacter syntrophicus, type sp., Thermoanaerobacteraceae

Dictyoglomi (2)

X69194, Dictyoglomus thermophilum, type sp., Dictyoglomaceae

CP001251, Dictyoglomus turgidum, Dictyoglomaceae

AB062280, Thermanaeromonas toyohensis, type sp., Thermoanaerobacteraceae

AY772476, Caldicellulosiruptor acetigenus, Thermoanaerobacterales

AJ004811, Caldicellulosiruptor kristjanssonii, Thermoanaerobacterales

X82842, Caldicellulosiruptor lactoaceticus, Thermoanaerobacterales

L09178, Caldicellulosiruptor saccharolyticus, type sp., Thermoanaerobacterales

U80596, Caldicellulosiruptor owensensis, Thermoanaerobacterales

EF100908, Caldicellulosiruptor hydrothermalis, Thermoanaerobacterales

CP001393, Caldicellulosiruptor bescii, Thermoanaerobacterales

EF100909, Caldicellulosiruptor kronotskyensis, Thermoanaerobacterales

AB061441, Thermaerobacter nagasakiensis, Unclassified Clostridiales

AF343566, Thermaerobacter subterraneus, Unclassified Clostridiales

AY936496, Thermaerobacter litoralis, Unclassified Clostridiales

AB454087, Thermaerobacter composti, Unclassified Clostridiales

AB011495, Thermaerobacter marianensis, type sp., Unclassified Clostridiales

Aquificae (28)

Aquificaceae (11)

AB120294, Hydrogenivirga caldilitoris, type sp., Aquificaceae

AB235314, Hydrogenivirga okinawensis, Aquificaceae

M83548, Aquifex pyrophilus, type sp., Aquificaceae

AJ278895, Thermocrinis albus, Aquificaceae

AJ005640, Thermocrinis ruber, type sp., Aquificaceae

AM260555, Thermocrinis minervae, Aquificaceae

Z30242, Hydrogenobacter hydrogenophilus, Aquificaceae

CP002221, Hydrogenobacter thermophilus, type sp., Aquificaceae

AB026268, Hydrogenobacter subterraneus, Aquificaceae

GU233444, Thermothrix azorensis, Burkholderiaceae

D16296, Hydrogenobaculum acidophilum, type sp., Aquificaceae

Hydrogenothermaceae (9)

AF528192, Sulfurihydrogenibium azorense, Hydrogenothermaceae

AM259502, Sulfurihydrogenibium rodmanii, Hydrogenothermaceae

AM778960, Sulfurihydrogenibium kristjanssonii, Hydrogenothermaceae

AB071324, Sulfurihydrogenibium subterraneum, type sp., Hydrogenothermaceae

AY686713, Sulfurihydrogenibium yellowstonense, Hydrogenothermaceae

DQ989208, Venenivibrio stagnispumantis, type sp., Hydrogenothermaceae

AF385630, Persephonella guaymasensis, Hydrogenothermaceae

AF188332, Persephonella marina, type sp., Hydrogenothermaceae

AB086419, Persephonella hydrogeniphila, Hydrogenothermaceae

Desulfurobacteriaceae (7)

AY263403, Thermovibrio ammonificans, Desulfurobacteriaceae

AY268937, Thermovibrio guaymasensis, Desulfurobacteriaceae

AB105049, Balnearium lithotrophicum, type sp., Desulfurobacteriaceae

AJ316619, Thermovibrio ruber, type sp., Desulfurobacteriaceae

AY268939, Desulfurobacterium atlanticum, Desulfurobacteriaceae

AY268936, Desulfurobacterium pacificum, Desulfurobacteriaceae

AJ001049, Desulfurobacterium thermolithotrophum, type sp., Desulfurobacteriaceae

AB282756, Thermosulfidibacter takaii, type sp., Unclassified Aquificales

Thermodesulfobacteria (7)

X96725, Thermodesulfobacterium hveragerdense, Thermodesulfobacteriaceae

AF334601, Thermodesulfobacterium thermophilum, Thermodesulfobacteriaceae

AF418169, Thermodesulfobacterium commune, type sp., Thermodesulfobacteriaceae

AF332514, Thermodesulfobacterium hydrogeniphilum, Thermodesulfobacteriaceae

EF554596, Caldimicrobium rimae, type sp., Thermodesulfobacteriaceae

AF393376, Thermodesulfatator indicus, type sp., Thermodesulfobacteriaceae

EU435435, Thermodesulfatator atlanticus, Thermodesulfobacteriaceae

AB428365, Caldisericum exile, type sp., Caldisericaceae

Synergistetes (18)

AF234544, Dethiosulfovibrio marinus, Synergistaceae

AF234542, Dethiosulfovibrio russensis, Synergistaceae

AY005466, Dethiosulfovibrio acidaminovorans, Synergistaceae

U52817, Dethiosulfovibrio peptidovorans, type sp., Synergistaceae

EU719657, Dethiosulfovibrio salsuginis, Synergistaceae

EF436500, Jonquetella anthropi, type sp., Synergistaceae

EU309492, Pyramidobacter piscolens, type sp., Synergistaceae

AF069287, Aminobacterium colombiense, type sp., Synergistaceae

AF073521, Aminobacterium mobile, Synergistaceae

CU463952, Cloacibacillus evryensis, type sp., Synergistaceae

L08066, Synergistes jonesii, type sp., Synergistaceae

CP001818, Thermanaerovibrio acidaminovorans, type sp., Synergistaceae

FR733707, Thermanaerovibrio velox, Synergistaceae

AY642589, Aminiphilus circumscriptus, type sp., Synergistaceae

DQ071273, Thermovirga lienii, type sp., Synergistaceae

FJ862996, Anaerobaculum hydrogeniformans, Synergistaceae

U50711, Anaerobaculum thermoterrenum, type sp., Synergistaceae

FR733692, Acetomicrobium flavidum, type sp., Bacteroidaceae

Y08935, Coprothermobacter platensis, Thermodesulfobiaceae

X69335, Coprothermobacter proteolyticus, type sp., Thermodesulfobiaceae

AB077817, Thermodesulfobium narugense, type sp., Thermodesulfobiaceae

Thermotogae (39)

Thermotogaceae (21)

DQ647057, Thermosipho africanus, type sp., Thermotogaceae

AB024932, Thermosipho japonicus, Thermotogaceae

AB257289, Thermosipho globiformans, Thermotogaceae

Z70248, Thermosipho melanesiensis, Thermotogaceae

GQ292553, Thermosipho affectus, Thermotogaceae

AJ577471, Thermosipho atlanticus, Thermotogaceae

AJ577471, Thermosipho atlanticus, Thermotogaceae

AJ272022, Thermosipho geolei, Thermotogaceae

Z49117, Fervidobacterium gondwanense, Thermotogaceae

EU851047, Fervidobacterium riparium, Thermotogaceae

CP000771, Fervidobacterium nodosum, type sp., Thermotogaceae

AY878719, Fervidobacterium changbaicum, Thermotogaceae

M59176, Fervidobacterium islandicum, Thermotogaceae

X80790, Thermotoga elfii, Thermotogaceae

AF355615, Thermotoga lettingae, Thermotogaceae

U22664, Thermotoga subterranea, Thermotogaceae

U89768, Thermotoga hypogea, Thermotogaceae

AB039769, Thermotoga thermarum, Thermotogaceae

M21774, Thermotoga maritima, type sp., Thermotogaceae

AB039768, Thermotoga neapolitana, Thermotogaceae

AJ872269, Thermotoga petrophila, Thermotogaceae

AJ872268, Thermotoga naphthophila, Thermotogaceae

AY800102, Petrotoga halophila, Thermotogaceae

FR733705, Petrotoga miotherma, type sp., Thermotogaceae

Y15479, Petrotoga mobilis, Thermotogaceae

AY125964, Petrotoga mexicana, Thermotogaceae

AJ311703, Petrotoga olearia, Thermotogaceae

AJ311702, Petrotoga sibirica, Thermotogaceae

FR850164, Defluviitoga tunisiensis, type sp., Thermotogaceae

HM037999, Geotoga petraea, type sp., Thermotogaceae

L10659, Geotoga subterranea, Thermotogaceae

EU588727, Oceanotoga teriensis, type sp., Thermotogaceae

AJ250439, Marinitoga camini, type sp., Thermotogaceae

AF326121, Marinitoga piezophila, Thermotogaceae

AB262395, Marinitoga okinawensis, Thermotogaceae

FM253687, Marinitoga litoralis, Thermotogaceae

AJ786363, Marinitoga hydrogenitolerans, Thermotogaceae

EU980631, Kosmotoga olearia, type sp., Thermotogaceae

EU276414, Thermococcoides shengliensis, Thermotogaceae

AB530678, Kosmotoga arenicorallina, Thermotogaceae

Archaea (361)

Euryarchaeota (313)

Halobacteria (139)

AB489220, Halostagnicola kamekurae, Halobacteriaceae

AM117571, Halostagnicola larsenii, type sp., Halobacteriaceae

AB533255, Halostagnicola alkaliphila, Halobacteriaceae

AM039978, Halovivax asiaticus, type sp., Halobacteriaceae

AM269467, Halovivax ruber, Halobacteriaceae

DQ367242, Haloterrigena longa, Halobacteriaceae

AM231733, Natrinema ejinorense, Halobacteriaceae

FJ545273, Haloterrigena daqingensis, Halobacteriaceae

FN376859, Natronorubrum sediminis, Halobacteriaceae

DQ535889, Natronorubrum sulfidifaciens, Halobacteriaceae

Y14028, Natronorubrum bangense, type sp., Halobacteriaceae

DQ205516, Natronorubrum aibiense, Halobacteriaceae

AB005656, Natronorubrum tibetense, Halobacteriaceae

D14123, Natrialba asiatica, type sp., Halobacteriaceae

D14124, Natrialba taiwanensis, Halobacteriaceae

AF251941, Natrialba aegyptia, Halobacteriaceae

AF262026, Natrialba hulunbeirensis, Halobacteriaceae

X72495, Natrialba magadii, Halobacteriaceae

AJ004806, Natrialba chahannaoensis, Halobacteriaceae

AJ002949, Natrinema pallidum, Halobacteriaceae

AJ002947, Natrinema pellirubrum, type sp., Halobacteriaceae

D14125, Halorubrum trapanicum, Halobacteriaceae

AY208972, Natrinema altunense, Halobacteriaceae

AB023426, Natrinema versiforme, Halobacteriaceae

AB289741, Natrinema gari, Halobacteriaceae

EF077633, Haloterrigena jeotgali, Halobacteriaceae

AF115478, Haloterrigena thermotolerans, Halobacteriaceae

AY820137, Haloterrigena saccharevitans, Halobacteriaceae

AM942763, Haloterrigena salina, Halobacteriaceae

CP001860, Haloterrigena turkmenica, type sp., Halobacteriaceae

AM285297, Haloterrigena hispanica, Halobacteriaceae

DQ367241, Haloterrigena limicola, Halobacteriaceae

AB125106, Natronolimnobius baerhuensis, type sp., Halobacteriaceae

AB125108, Natronolimnobius innermongolicus, Halobacteriaceae

AF333759, Halopiger aswanensis , Halobacteriaceae

AM268114, Halopiger xanaduensis, type sp., Halobacteriaceae

AF333760, Halobiforma haloterrestris, type sp., Halobacteriaceae

AY277582, Halobiforma lacisalsi, Halobacteriaceae

AB045012, Halobiforma nitratireducens, Halobacteriaceae

D87970, Natronobacterium gregoryi, type sp., Halobacteriaceae

EF077631, Natronococcus jeotgali, Halobacteriaceae

Z28378, Natronococcus occultus, type sp., Halobacteriaceae

D43628, Natronococcus amylolyticus, Halobacteriaceae

AB501361, Natronoarchaeum mannanilyticum, type sp., Halobacteriaceae

JF293279, Haloarchaeobius iranensis, type sp., Halobacteriaceae

JF293278, Haloarchaeobius iranensis, type sp., Halobacteriaceae

AY243109, Halococcus qingdaonensis, Halobacteriaceae

AB220647, Halococcus thailandensis, Halobacteriaceae

D11106, Halococcus morrhuae, type sp., Halobacteriaceae

AJ420376, Halococcus dombrowskii, Halobacteriaceae

DQ017835, Halococcus hamelinensis, Halobacteriaceae

AB004876, Halococcus saccharolyticus, Halobacteriaceae

AB004877, Halococcus salifodinae, Halobacteriaceae

EF077632, Halalkalicoccus jeotgali, Halobacteriaceae

AF435112, Halalkalicoccus tibetensis, type sp., Halobacteriaceae

EF660747, Haladaptatus cibarius, Halobacteriaceae

EU887285, Haladaptatus litoreus, Halobacteriaceae

DQ344973, Haladaptatus paucihalophilus, type sp., Halobacteriaceae

D13379, Halorubrum sodomense, Halobacteriaceae

AB090169, Halorubrum terrestre, Halobacteriaceae

D63572, Halorubrum distributum, Halobacteriaceae

EF028067, Halorubrum litoreum, Halobacteriaceae

L00922, Halorubrum coriense, Halobacteriaceae

EF139654, Halorubrum californiense, Halobacteriaceae

AM048786, Halorubrum chaoviator, Halobacteriaceae

DQ118426, Halorubrum ezzemoulense, Halobacteriaceae

AY510707, Halorubrum xinjiangense, Halobacteriaceae

FR870448, Halorubrum tebenquichense, Halobacteriaceae

AM491830, Halorubrum ejinorense, Halobacteriaceae

DQ355793, Halorubrum arcis, Halobacteriaceae

U17364, Halorubrum saccharovorum, type sp., Halobacteriaceae

DQ355813, Halorubrum aidingense, Halobacteriaceae

AM900832, Halorubrum kocurii, Halobacteriaceae

U17365, Halorubrum lacusprofundi, Halobacteriaceae

U17365, Halorubrum lacusprofundi, Halobacteriaceae

DQ355814, Halorubrum lipolyticum, Halobacteriaceae

AM235786, Halorubrum orientale, Halobacteriaceae

AY149598, Halorubrum tibetense, Halobacteriaceae

AM268115, Halorubrum aquaticum, Halobacteriaceae

EF077639, Halorubrum cibi, Halobacteriaceae

AY510708, Halorubrum alkaliphilum, Halobacteriaceae

D87972, Halorubrum vacuolatum, Halobacteriaceae

JF979130, Halopenitus persicus, type sp., Halobacteriaceae

AY498641, Halonotius pteroides, type sp., Halobacteriaceae

GQ282625, Haloplanus aerogenes, Halobacteriaceae

DQ417339, Haloplanus natans, type sp., Halobacteriaceae

EU931578, Haloplanus vescus, Halobacteriaceae

EU887283, Halogranum rubrum, type sp., Halobacteriaceae

FN594944, Halogranum salarium, Halobacteriaceae

GQ282623, Halogranum amylolyticum, Halobacteriaceae

GQ282624, Halogranum gelatinilyticum, Halobacteriaceae

AB037474, Haloferax alexandrinus, Halobacteriaceae

AY425724, Haloferax volcanii, type sp., Halobacteriaceae

D14128, Haloferax denitrificans, Halobacteriaceae

D13378, Haloferax gibbonsii, Halobacteriaceae

AB258305, Haloferax prahovense, Halobacteriaceae

AB081732, Haloferax lucentense, Halobacteriaceae

D11107, Haloferax mediterranei, Halobacteriaceae

DQ860980, Haloferax mucosum, Halobacteriaceae

AY458601, Haloferax sulfurifontis, Halobacteriaceae

DQ860977, Haloferax elongans, Halobacteriaceae

AY838278, Haloferax larsenii, Halobacteriaceae

EU887284, Halopelagius inordinatus, type sp., Halobacteriaceae

GQ282620, Halobellus clavatus, type sp., Halobacteriaceae

HQ451075, Halobellus salinus, Halobacteriaceae

GU208828, Halobellus limi, Halobacteriaceae

AY676200, Haloquadratum walsbyi, type sp., Halobacteriaceae

AF002984, Halogeometricum borinquense, type sp., Halobacteriaceae

EU887286, Halogeometricum rufum, Halobacteriaceae

EF055454, Halosarcina pallida, type sp., Halobacteriaceae

EU931577, Halosarcina limi, Halobacteriaceae

GU208826, Halolamina pelagica, type sp., Halobacteriaceae

AB285020, Halobacterium piscisalsi, Halobacteriaceae

AJ496185, Halobacterium salinarum, type sp., Halobacteriaceae

DQ256409, Halobacterium jilantaiense, Halobacteriaceae

AJ548827, Halobacterium noricense, Halobacteriaceae

AB454051, Salarchaeum japonicum, type sp., Halobacteriaceae

AB371717, Halarchaeum acidiphilum, type sp., Halobacteriaceae

HM159611, Halobaculum gomorrense, type sp., Halobacteriaceae

AB072815, Halosimplex carlsbadense, type sp., Halobacteriaceae

HQ197980, Halovenus aranensis, type sp., Halobacteriaceae

AY596297, Haloarcula marismortui, Halobacteriaceae

EF645688, Haloarcula vallismortis, type sp., Halobacteriaceae

AB010964, Haloarcula quadrata, Halobacteriaceae

AB090167, Haloarcula hispanica, Halobacteriaceae

EF645681, Haloarcula argentinensis, Halobacteriaceae

DQ826513, Haloarcula amylolytica, Halobacteriaceae

EF645685, Haloarcula japonica, Halobacteriaceae

FJ429317, Haloarcula salaria, Halobacteriaceae

EF533994, Halomicrobium katesii, Halobacteriaceae

FJ429313, Haloarcula tradensis, Halobacteriaceae

AY596297, Haloarcula marismortui, Halobacteriaceae

EF645690, Halomicrobium mukohataei, type sp., Halobacteriaceae

HM063952, Halomicrobium zhouii, Halobacteriaceae

EF127229, Halorhabdus tiamatea, Halobacteriaceae

AF071880, Halorhabdus utahensis, type sp., Halobacteriaceae

GQ282621, Halorientalis regularis, type sp., Halobacteriaceae

AY498645, Natronomonas moolapensis, Halobacteriaceae

CR936257, Natronomonas pharaonis , type sp., Halobacteriaceae

AB519798, Halomarina oriensis, type sp., Halobacteriaceae

Methanomicrobia (71)

Methanomicrobiales (37)

AF347025, Methanocalculus chunghsingensis, Unclassified Methanomicrobiales

AF033672, Methanocalculus halotolerans, type sp., Unclassified Methanomicrobiales

AF411470, Methanocalculus taiwanensis, Unclassified Methanomicrobiales

AB008853, Methanocalculus pumilus, Unclassified Methanomicrobiales

Methanocorpusculaceae (4)

AY196676, Methanocorpusculum bavaricum, Methanocorpusculaceae

M59147, Methanocorpusculum parvum, type sp., Methanocorpusculaceae

AY260436, Methanocorpusculum labreanum, Methanocorpusculaceae

FR749947, Methanocorpusculum sinense, Methanocorpusculaceae

Y16428, Methanofollis liminatans, Methanomicrobiaceae

AF095272, Methanofollis tationis, type sp., Methanomicrobiaceae

AB371073, Methanofollis ethanolicus, Methanomicrobiaceae

AF262035, Methanofollis aquaemaris, Methanomicrobiaceae

AY186542, Methanofollis formosanus, Methanomicrobiaceae

Methanospirillaceae (2)

AY196683, Methanospirillum hungatei, type sp., Methanospirillaceae

AB517986, Methanospirillum lacunae, Methanospirillaceae

AB447467, Methanolinea mesophila, Methanoregulaceae

DQ282124, Methanoregula boonei, type sp., Methanoregulaceae

AB479390, Methanoregula formicica, Methanoregulaceae

AB162774, Methanolinea tarda, type sp., Methanoregulaceae

EU156000, Methanosphaerula palustris, type sp., Methanoregulaceae

FJ977567, Methanoculleus hydrogenitrophicus, Methanomicrobiaceae

AB065297, Methanoculleus thermophilus, Methanomicrobiaceae

AY196674, Methanoculleus bourgensis, type sp., Methanomicrobiaceae

M59134, Methanoculleus marisnigri, Methanomicrobiaceae

AF531178, Methanoculleus submarinus, Methanomicrobiaceae

AB038795, Methanoculleus chikugoensis, Methanomicrobiaceae

Y16382, Methanoculleus palmolei, Methanomicrobiaceae

DQ787476, Methanoculleus receptaculi, Methanomicrobiaceae

Methanomicrobiaceae (9)

U76631, Methanoplanus petrolearius, Methanomicrobiaceae

AY196678, Methanolacinia paynteri, type sp., Methanomicrobiaceae

M59142, Methanomicrobium mobile, type sp., Methanomicrobiaceae

FR733674, Methanoplanus endosymbiosus, Methanomicrobiaceae

M59143, Methanoplanus limicola, type sp., Methanomicrobiaceae

FR733663, Methanogenium cariaci, type sp., Methanomicrobiaceae

FR749908, Methanogenium frigidum, Methanomicrobiaceae

DQ177344, Methanogenium marinum, Methanomicrobiaceae

M59131, Methanogenium organophilum, Methanomicrobiaceae

0.01

Methanosarcinales (31)

Methanosarcinaceae (26)

AJ012094, Methanosarcina barkeri, Methanosarcinaceae

FR733661, Methanosarcina vacuolata, Methanosarcinaceae

M59140, Methanosarcina thermophila, Methanosarcinaceae

M59137, Methanosarcina acetivorans, Methanosarcinaceae

FR733698, Methanosarcina siciliae, Methanosarcinaceae

AJ012095, Methanosarcina mazei, Methanosarcinaceae

AB288262, Methanosarcina horonobensis, Methanosarcinaceae

AF432127, Methanosarcina lacustris, Methanosarcinaceae

AJ238648, Methanosarcina baltica, Methanosarcinaceae

AJ012742, Methanosarcina semesiae, Methanosarcinaceae

AJ238002, Methanimicrococcus blatticola, type sp., Methanosarcinaceae

FR733684, Methanolobus bombayensis, Methanosarcinaceae

U20155, Methanolobus vulcani, Methanosarcinaceae

AB370245, Methanolobus profundi, Methanosarcinaceae

U20154, Methanolobus taylorii, Methanosarcinaceae

U20152, Methanolobus oregonensis, Methanosarcinaceae

EU711413, Methanolobus zinderi, Methanosarcinaceae

AF120163, Methanomethylovorans hollandica, type sp., Methanosarcinaceae

AY672821, Methanomethylovorans thermophila, Methanosarcinaceae

AY941801, Methanococcoides alaskense, Methanosarcinaceae

CP000300, Methanococcoides burtonii , Methanosarcinaceae

FR733669, Methanococcoides methylutens, type sp., Methanosarcinaceae

FR733671, Methanohalophilus halophilus, Methanosarcinaceae

M59133, Methanohalophilus mahii, type sp., Methanosarcinaceae

AY290717, Methanohalophilus portucalensis, Methanosarcinaceae

FJ224366, Methanosalsum zhilinae, type sp., Methanosarcinaceae

FR733675, Methanohalobium evestigatum, type sp., Methanosarcinaceae

CP002565, Methanosaeta concilii, type sp., Methanosaetaceae

AB071701, Methanosaeta thermophila, Methanosaetaceae

AY817738, Methanosaeta harundinacea, Methanosaetaceae

DQ787474, Methermicoccus shengliensis, type sp., Methermicoccaceae

Methanocellales (3)

AB196288, Methanocella paludicola, type sp., Methanocellaceae

JN048683, Methanocella conradii, Methanocellaceae

AM114193, Methanocella arvoryzae, Methanocellaceae

Archaeoglobi (8)

AJ299219, Archaeoglobus profundus, Archaeoglobaceae

AF220166, Ferroglobus placidus, type sp., Archaeoglobaceae

AE000782, Archaeoglobus fulgidus , type sp., Archaeoglobaceae

AF220165, Geoglobus ahangari, type sp., Archaeoglobaceae

FJ216404, Geoglobus acetivorans, Archaeoglobaceae

AB274307, Archaeoglobus infectus, Archaeoglobaceae

AF418181, Archaeoglobus veneficus, Archaeoglobaceae

FJ810190, Archaeoglobus sulfaticallidus, Archaeoglobaceae

Methanobacteria (40)

AB542742, Methanobacterium petrolearium, Methanobacteriaceae

AB368917, Methanobacterium kanagiense, Methanobacteriaceae

AB542743, Methanobacterium ferruginis, Methanobacteriaceae

X99044, Methanobacterium subterraneum, Methanobacteriaceae

AF169245, Methanobacterium formicicum, type sp., Methanobacteriaceae

AF093061, Methanobacterium palustre, Methanobacteriaceae

DQ649335, Methanobacterium alcaliphilum, Methanobacteriaceae

AF233586, Methanobacterium congolense, Methanobacteriaceae

HQ110085, Methanobacterium lacus, Methanobacteriaceae

AF095261, Methanobacterium ivanovii, Methanobacteriaceae

DQ517520, Methanobacterium arcticum, Methanobacteriaceae

EF016285, Methanobacterium veterum, Methanobacteriaceae

AY196657, Methanobacterium bryantii, Methanobacteriaceae

AF028690, Methanobacterium oryzae, Methanobacteriaceae

AY350742, Methanobacterium beijingense, Methanobacteriaceae

U62533, Methanobrevibacter curvatus, Methanobacteriaceae

U82322, Methanobrevibacter filiformis, Methanobacteriaceae

U41095, Methanobrevibacter cuticularis, Methanobacteriaceae

AY196665, Methanobrevibacter arboriphilus, Methanobacteriaceae

AF242652, Methanobrevibacter acididurans, Methanobacteriaceae

U55238, Methanobrevibacter gottschalkii, Methanobacteriaceae

U55236, Methanobrevibacter thaueri, Methanobacteriaceae

AY196673, Methanobrevibacter millerae, Methanobacteriaceae

U55233, Methanobrevibacter smithii, Methanobacteriaceae

U55237, Methanobrevibacter woesei, Methanobacteriaceae

AY615201, Methanobrevibacter olleyae, Methanobacteriaceae

AY196666, Methanobrevibacter ruminantium, type sp., Methanobacteriaceae

U55240, Methanobrevibacter wolinii, Methanobacteriaceae

CP000102, Methanosphaera stadtmanae , type sp., Methanobacteriaceae

AY386124, Methanobacterium aarhusense, Methanobacteriaceae

EU333914, Methanobacterium flexile, Methanobacteriaceae

EU366499, Methanobacterium movens, Methanobacteriaceae

X99047, Methanothermobacter thermoflexus, Methanobacteriaceae

X99048, Methanothermobacter thermophilus, Methanobacteriaceae

X99046, Methanothermobacter defluvii, Methanobacteriaceae

AY196660, Methanothermobacter thermautotrophicus, type sp., Methanobacteriaceae

AB104858, Methanothermobacter wolfeii, Methanobacteriaceae

X15364, Methanothermobacter marburgensis, Methanobacteriaceae

HQ283273, Methanothermobacter crinale, Methanobacteriaceae

CP002278, Methanothermus fervidus, type sp., Methanothermaceae

Thermococci (33)

AY099173, Thermococcus barossii, Thermococcaceae

AY099174, Thermococcus celer, type sp., Thermococcaceae

AY099179, Thermococcus hydrothermalis, Thermococcaceae

AB107767, Thermococcus coalescens, Thermococcaceae

AF394925, Thermococcus thioreducens, Thermococcaceae

AB107768, Thermococcus celericrescens, Thermococcaceae

AY099185, Thermococcus siculi, Thermococcaceae

AJ310754, Thermococcus atlanticus, Thermococcaceae

AY099186, Thermococcus stetteri, Thermococcaceae

AY099176, Thermococcus fumicolans, Thermococcaceae

AF479014, Thermococcus gammatolerans, Thermococcaceae

D38650, Thermococcus kodakarensis, Thermococcaceae

AY099183, Thermococcus peptonophilus, Thermococcaceae

AY099187, Thermococcus waiotapuensis, Thermococcaceae

U76534, Thermococcus zilligii, Thermococcaceae

AY099182, Thermococcus pacificus, Thermococcaceae

AY099170, Thermococcus acidaminovorans, Thermococcaceae

AY099184, Thermococcus profundus, Thermococcaceae

AY099177, Thermococcus gorgonarius, Thermococcaceae

AY099177, Thermococcus gorgonarius, Thermococcaceae

AY099178, Thermococcus guaymasensis, Thermococcaceae

AE009950, Pyrococcus furiosus, type sp., Thermococcaceae

AY099169, Pyrococcus horikoshii, Thermococcaceae

AY099168, Pyrococcus glycovorans, Thermococcaceae

AY099175, Thermococcus chitonophagus, Thermococcaceae

EU682399, Pyrococcus yayanosii, Thermococcaceae

AY099172, Thermococcus barophilus, Thermococcaceae

Y08384, Thermococcus aggregans, Thermococcaceae

AY099171, Thermococcus aegaeus, Thermococcaceae

AJ238992, Thermococcus sibiricus, Thermococcaceae

FR749899, Thermococcus litoralis, Thermococcaceae

AB055121, Thermococcus alcaliphilus, Thermococcaceae

AB019239, Palaeococcus ferrophilus, type sp., Thermococcaceae

AY134472, Palaeococcus helgesonii, Thermococcaceae

Thermoplasmata (8)

Ferroplasmaceae (3)

AM943980, Acidiplasma aeolicum, type sp., Ferroplasmaceae

AY907888, Acidiplasma cupricumulans, Ferroplasmaceae

AJ224936, Ferroplasma acidiphilum, type sp., Ferroplasmaceae

Picrophilaceae (2)

X84901, Picrophilus oshimae, type sp., Picrophilaceae

AE017261, Picrophilus torridus , Picrophilaceae

Thermoplasmataceae (2)

M38637, Thermoplasma acidophilum, type sp., Thermoplasmataceae

AJ299215, Thermoplasma volcanium, Thermoplasmataceae

AB269873, Thermogymnomonas acidicola, type sp., Unclassified Thermoplasmatales

HQ896499, Methanomassiliicoccus luminyensis, type sp., Unclassified Methanomicrobia

Methanococci (12)

DQ195164, Methanococcus aeolicus, Methanococcaceae

AB057722, Methanothermococcus okinawensis, Methanococcaceae

AY196675, Methanococcus vannielii, Methanococcaceae

M59128, Methanothermococcus thermolithotrophicus, type sp., Methanococcaceae

AB100884, Methanotorris formicicus, Methanocaldococcaceae

CP002737, Methanotorris igneus, Methanocaldococcaceae

Methanocaldococcaceae (6)

AF547621, Methanocaldococcus indicus, Methanocaldococcaceae

AF025822, Methanocaldococcus infernus, Methanocaldococcaceae

FJ766848, Methanocaldococcus villosus, Methanocaldococcaceae

AF051404, Methanocaldococcus vulcanius, Methanocaldococcaceae

L77117, Methanocaldococcus jannaschii , type sp., Methanocaldococcaceae

AF056938, Methanocaldococcus fervens, Methanocaldococcaceae

AE009439, Methanopyrus kandleri, type sp., Methanopyraceae

Crenarchaeota (48)

Sulfolobaceae (16)

X90482, Metallosphaera prunae, Sulfolobaceae

D26491, Metallosphaera sedula, type sp., Sulfolobaceae

D86414, Metallosphaera hakonensis, Sulfolobaceae

FN796482, Metallosphaera cuprina, Sulfolobaceae

D26489, Acidianus brierleyi, Sulfolobaceae

D85506, Acidianus ambivalens, Sulfolobaceae

D85505, Acidianus infernus, type sp., Sulfolobaceae

AY907891, Acidianus sulfidivorans, Sulfolobaceae

AB022438, Sulfolobus tokodaii, Sulfolobaceae

D85507, Sulfurisphaera ohwakuensis, type sp., Sulfolobaceae

AB010957, Sulfolobus yangmingensis, Sulfolobaceae

D14876, Sulfolobus acidocaldarius, type sp., Sulfolobaceae

D85520, Stygiolobus azoricus, type sp., Sulfolobaceae

D85519, Sulfolobus metallicus, Sulfolobaceae

M32504, Sulfolobus shibatae, Sulfolobaceae

D26490, Sulfolobus solfataricus, Sulfolobaceae

Thermoproteales (11)

Thermoproteaceae (10)

AJ277124, Pyrobaculum arsenaticum, Thermoproteaceae

AB087402, Pyrobaculum oguniense, Thermoproteaceae

CP001014, Thermoproteus neutrophilus, Thermoproteaceae

L07510, Pyrobaculum aerophilum, Thermoproteaceae

AB078332, Pyrobaculum calidifontis, Thermoproteaceae

M35966, Thermoproteus tenax, type sp., Thermoproteaceae

AB063630, Vulcanisaeta distributa, type sp., Thermoproteaceae

AB063645, Vulcanisaeta souniana, Thermoproteaceae

AB013926, Caldivirga maquilingensis, type sp., Thermoproteaceae

AB005296, Thermocladium modestius, type sp., Thermoproteaceae

X14835, Thermofilum pendens, type sp., Thermofilaceae

Desulfurococcales and Fervidicoccales (11)

AY264344, Desulfurococcus fermentans, Desulfurococcaceae

EU167539, Desulfurococcus kamchatkensis, Desulfurococcaceae

CP002363, Desulfurococcus mucosus, type sp., Desulfurococcaceae

X99556, Thermosphaera aggregans, type sp., Desulfurococcaceae

X98064, Sulfophobococcus zilligii, type sp., Desulfurococcaceae

AJ012645, Staphylothermus hellenicus, Desulfurococcaceae

X99560, Staphylothermus marinus, type sp., Desulfurococcaceae

EF552404, Fervidicoccus fontis, type sp., Fervidicoccaceae

X99562, Ignicoccus islandicus, type sp., Desulfurococcaceae

AJ271794, Ignicoccus pacificus, Desulfurococcaceae

AJ318042, Ignicoccus hospitalis, Desulfurococcaceae

AB109559, Aeropyrum camini, Desulfurococcaceae

D83259, Aeropyrum pernix, type sp., Desulfurococcaceae

X99554, Thermodiscus maritimus, type sp., Desulfurococcaceae

Y07784, Stetteria hydrogenophila, type sp., Desulfurococcaceae

Acidilobales (3)

AF191225, Acidilobus aceticus, type sp., Acidilobaceae

AY350586, Acidilobus saccharovorans, Acidilobaceae

AB087499, Caldisphaera lagunensis, type sp., Caldisphaeraceae

DQ060321, Ignisphaera aggregans, type sp., Desulfurococcaceae

Pyrodictiaceae (2)

CP000493, Hyperthermus butylicus , type sp., Pyrodictiaceae

M21087, Pyrodictium occultum, type sp., Pyrodictiaceae