TGAC Browser A new open-source client-side rendering genomic browse .

TGAC BrowserA new open-source client-side rendering genomic browse

www.tgac-browser.tgac.ac.uk

http://www.tgac-browser.tgac.ac.uk/

Refresh Move left at a large scale

Move left(1bp)

Move right(1bp)

Move right at a large scale

zoom in at a large scale

zoom in at a small scale

zoom out at a small scale

zoom out at a large scale

select entire scaffold

Search box

start and end of scaffold to save

current session

export json file

choose track(s) to display

Figure 1: Labels showing various buttons on the Browser

Controls



Choose the tracks to display



Track/Settings: to select and display the track(s)



Merge two tracks



Merged tracks



Select a region to dump the fasta sequence



Select/download the fasta sequence of selected region



Zoom into a gene



Edit the gene label



Delete a track



Flagging a gene



Flagged gene



Save current session


Load an already saved session


Export the current session


Exported session as a json file, which can later be loaded


To retrieve cDNA/peptide seq


To retrieve protein domains predicted by InterProScan


Submitting a BLAST query


BLAST result in the BLAST track


BLAST result as per the alignment scores


Thanks

Contact Details:

1.Anil [email protected]

2.Xingdong [email protected]

3.Robert [email protected]

4.Mario [email protected]


TGAC Browser A new open-source client-side rendering genomic browse .

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