Task 3.3: Additional Applications

FP6−2004−Infrastructures−6-SSA-026409

www.eu-eela.org

E-infrastructure shared between Europe and Latin America

Task 3.3:Additional Applications

Inês C. DutraCOPPE/UFRJ1st International EELA ConferenceSantiago, Chile, September 4th, 2006

Santiago, Chile, September 4th, 2006 2FP6−2004−Infrastructures−6-SSA-026409


• Task 3.3– Recap:

people deliverables milestone

• Applications Status Report

• Conclusions

• Future Work Plan

Task 3.3: Agenda



• Recap:– 8 Partners/ 6 Countries (1 EU and 5 LA):

CEDERJ (Brazil), active CIEMAT (Spain), active Citmatel (Cuba), active SENAMHI (Peru), active UniCan (Spain), active UDEC (Chile), active UFRJ (Brazil), active UNAM (Mexico). active

Task 3.3: Recap



Task 3.3: contributes to Deliverables

D3.2.1 App and Tools Customized

M06 Done Aug 15th, 2006

D3.1.2 Selection Report M08 Oct 15th, 2006

D3.3.1 App Impact Rep M09 Nov 15th, 2006


M12 Feb 15th, 2007

D3.3.2 App Impact Rep M15 May 15th, 2007


M18 Aug 15th, 2007

D3.3.3 App Impact Rep M23 Jan 15th, 2008



• Milestone – e-Education and Climate

M3.2: successful use of the selected e-Education and Climate applications and tools _ M15.

– We have partially reached this milestone with the experiments with the climate application and one additional application.

Task 3.3: Milestone



• Two Application Areas: e-Education and Climate

– e-Education CEDERJ, VoD CIEMAT, VoD CUBA, CITMATEL, CuGfL UFRJ, Acadia, VoD, SATyrus, PILP UNAM. LEMDist

– Climate SENAMHI, UniCan, UDEC.

Applications Status Report




CLIMATE(SENAHMI, UNICAN, UDEC)



Application Status Report: Climate

• Create a system of stationary analysis and prediction for the rain and the cycle of water (El Niño-La Niña phenomena)

• Plus humidity, basins of main rivers and their tributaries, lakes, etc

• Project also shared with other national and international institutions (France, UK) and projects

• Lots of data concerning monthly rainings from several institutions collected and corrected with their respective errors from 1990

• From 1992, these data are daily collected (rain, temperature, wind) from 128 weather stations



Application Status Report: Climate

• Krigging Bayesian methods for the different regions for the prediction of basins, caudals and lakes capacities

• Dynamic prediction useful to be compared with traditional approaches

• Studies will be made for different phenomena with different timescale (day to century) in order to understand them locally and their influence in the studied processes

• Hope to understand slow or quick variations in the national climate (specially for high-risk situations)

Santiago, Chile, September 4th, 2006 10



• Implementation of CAM over Scientific Linux

• Test of a short simulation to verify reasonable values according with climate patterns.

1. SENAMHI Progress




2. SENAMHI Test on Scientific Linux

CAMSST

Rainfall

Temperature

Wind

Geopotential height

humidity




2. SENAMHI Test on Scientific Linux




• Implementation of CAM on EELA GRID

• Prepare the input data for the real simulation.

• Analyze the climate simulation of CAM and compare with observed information.

3. SENAMHI Future advances





VoD(CEDERJ, UFRJ)




Application Status Report: VoD





• Storage servers will be running on the storage elements

• Multimedia server will continue to manage requests

• Video streams continue to be sent to clients (UDP)

• Backup of classes stored on the grid

• RIO server will be a cache of classes

• Integration with the remote lab





• How is it being ported to EELA:– Video spread across the grid machines

• Current Status– Temporarily stopped because student that was working on that

found a new job and left– Seeking a new student

• Future work plan– Hopefully find a student to work on the porting– Diego and Edmundo agreed that the job is simple

• People:– Edmundo Souza e Silva and Morganna Carmem Diniz





SATyrus




SATyrus:

• SATisfiability-based, neuro-symbolic architecture;

• Exact formulation synthesizer.

Target Problem, e.g., colouring

Constraints Modeling

SATyrus compiler

Energy Function

Optimizer, e.g., stochastic HONNs

Global/Local optima

Application Status Report: SATyrus




Application Status Report: SATyrus

• How is it being ported to EELA

multistart metaheuristics: multiple networks produced by SATyrus, each mapped to the available grid machines, each starting from a different point in the state space of solutions;

• Current Status

SATyrus compiler and neural network simulator producing neural networks structures and initialization data; (ready to run on the grid)

• Future Work Plan

Short term: have it running with multistart metaheuristics on EELA, attend the Grid School in Rio de Janeiro

Long term: distributed strategy with high scale neural network spread throughout the grid and under SER synchronization

• People

Priscila M. V. Lima, Felipe M. G. França, Glaucia C. Pereira (going to CIEMAT), M. Mariela M. Morveli Espinoza, Ramon Diacovo, Guilherme B. M. Domingues and Inês C. Dutra.





Drug Discovery Prediction of diseases

Social Networks

PILP(Parallel Inductive Logic Programming)




Application Status Report: PILP

• Use of Inductive Logic Programming to extract relevant knowledge from structured data

Backgroundknowledge Language bias Constraints

Observations

Model: first order clauses

active(A,B,C,D,E,F,Error) :-

conf(A,B),

pos_charge(A,B,C),

hydrophobic(A,B,D),

hdonor(A,B,E),

hacc(A,B,F),

dist(A,B,D,C,2.96716978243578,Error),

dist(A,B,E,C,6.96028282471338,Error),

dist(A,B,F,C,3.33080740962308,Error),

dist(A,B,E,D,8.24269311680351,Error),

dist(A,B,F,D,6.14964321711431,Error),

dist(A,B,F,E,6.37276855063794,Error).




Applications Status Report: PILP

The need for resources

Assume 10-fold cross-validation Ensembles of size 100 3 learning parameters 3 splitting methods 3 kinds of ensemble methods 1 hour to run each experiment

Number of experiments: 27,000 Total runtime: ~ 3 years!!!!

(only for the experimentation phase)




Application Status Report: PILP

• How is it being ported to EELA– Already ported, each random search is started per machine

• Current Status– Prediction of Carcinogenesis in rodents almost complete

• Future work plan– Full experiment, other domains– Integrate with ReGS [CCGrid 2005] and rasmol

• People Inês C. Dutra, Vítor Santos Costa, Bernardo F. Costa




Applications Status Report: LEMDist

NMRFood Engineering

Electrophoresis cns_solve




Application Status Report: LEMDist

• How is it being ported to EELA– 4 activities:

Capillarity electrophoresis: LABView for the remote access interface NMR Computational modelling: cns_solve Food engineering

• Current Status– implementation of the EELA testbed during the 4 th tutorial in MX. 1st remote access live

experiment going on• Future work plan

– Short term: Testbed with NMR at the 4th tutorial in MX– Long term: LABView, food engineering and cns_solve

• People– NMR and tut4: José Luis Garza Ramírez, Carlos Pineda Muñoz, Miguel Alvarez Pasaye,

Moises Hernández Duarte, Jesús Cruz Guzmán– Cns_solve: Enrique Angeles Anguiano, Jesus Cruz Guzman, Rios Hulme– Repository design and user interface: Larisa Enriquez, Mario Garcia– Visualization: Carlos Pineda Muñoz , Miguel Alvarez, Moises Hernández, José Luis Garza

Ramírez, Ernestina Chavez, Angel Lopez– Food engineering: Jose Luis Arjona Roman, Jaime Flores Minnuti, Laura Patricia Martínez

Padilla• More info presented by WP2




Applications Status Report: CuGfl

CuGfl(Cuba, CITMATEL)

Cuban

Grid

for Learning

Universities

CuGfLPortal

Portal / Website

Repositories (content, digital assets, metadata)

Gov Agencies

Libraries

Ministries e-Learning initiatives

Users only need to search for content at one central location (portal).

Content still resides on content owners’ servers, fully controlled and managed by them.

Increase chances the content being discovered as it is being properly described in the metadata.

Increase number of visitors to content owners’ portals/websites.

Users can still directly access the content owners’ portals/websites.

With With CuGfLCuGfL……




Application Status Report: CuGfl

• In order to incorporate the results obtained in the areas of digital content, digital repositories and remote laboratories we mainly are interested to work on Learning Management System (LMS), digital content, multimedia repository and e-learning services in order to:– test and adapt the latest version of LMS, e-learning services, methodologies,

infrastructures and multimedia repository, on grid and IPv6 environment with different access bandwidths.

– Customize and optimize the LMS and e-learning service redesigning the applications and service management according to the grid and IPv6 environment. Upgrade the e-learning tools, simulators, virtual laboratories, digital repository and multimedia servers mainly based on free software.

• These experiences will help to:– Provide teachers and tutors at scientific institutes and Universities with tools

to access the grid in order to prepare their courses, enhancing the distributed collaborative work;

– Help students to learn about grid technology by using it to solve problems and accessing remote laboratories;

– Adapt content under international standards according to the distributed digital libraries and repositories;

– Create courses to be given in a collaborative way.





Activities people wish to get involved:

Remote laboratory

· Remote laboratory customization requirement analysis

· Design of the remote laboratory web interface suitable for EELA activities

· Remote laboratory web interface certification

· Remote laboratory use in courses and dissemination

· Impact on educational processes

Multimedia Interactive Course

· Repository and software analysis and interactive course identification

· Set up of multimedia data repository

· Set up of multimedia grid virtual server

· Multimedia repository and server certification

· Update of multimedia interactive material





Semantic Grid

· Semantic requirements capture

· Customization of the Grid middleware chosen by EELA

· Semantic Grid middleware certification

· Customization of the semantic Grid for dissemination tools

· Semantic Grid use in courses and dissemination


Collaborative Courses

· Set up tutor framework

· Design of collaborative courses

· Pilot course deployment

· Monitoring of the pilot course

· Implementation in regular science courses






CuGfl(Cuba, CITMATEL)

• How is it being ported to EELA– Not yet informed

• Current status– CuGfL portal is live http://www.cursosenlinea.cu– http://www.redciencia.cu - April 2006

• Future Work Plan– Complete CuGfL Guidelines on Web Resources, Learning Objects

and e-Learning Systems

• People– Francisco Fernandez, Omar Ochoa Rodriguez, Daniel Aldama




Applications Status Report: ACADIA

• Application of long-distance education

• Based on a peer-to-peer technology and shared resources, called DEDALUS

• ACADIA provides a learning environment for students and teachers since the building of a lesson to the delivery of works and tests.

• Intended to increase the interaction between teacher and students, and among students, opening a space for discussing questions, suggestions and criticism

• Intensive use of multimedia (images, videos, sounds and texts)

• ACADIA in EELA intends to combine an application built for a peer-to-peer platform with a grid platform. Architecturally, ACADIA will act as a wrapper of EELA’s grid middleware.




• Great achievements since last workshop in Itacuruçá• More synergy and interaction among all partners of

task 3.3• People are very much involved in making the EELA

infrastructure a success• IMHO all of these apps may be deployed by M12• We will all work hard in the next months to achieve

this challenging goal

Conclusions




Future Work Plan

• M08 - First Deliverable D3.1.2– Preparation of selection report – Sep 15th PO

– Report is being prepared based on feedback of partners

– Realistic goals – short term:

Climate

PILP

SATyrus

– Long term: Acadia, LEMDist, VoD, and CuGfl

– Grid School will be a must for these applications!




Future Work Plan

• Still needed for some applications:

– Status report

How it is being ported to EELA

Current status

Timetable

People involved (part-time? Full-time?)

• Partners should bear in mind that all applications MUST be deployed by the end of the year and concentrate their efforts on it




Thanks!!!

• To all groups that have been contributing to task 3.3, working hard to make EELA a success!

Also to:Bernard Marechal Bernardo CostaDiego Carvalho Felipe FrançaJesus Casado Marcio FaermanMaría José Lopez Pedro RauschPriscila Machado Rafael MayoRaquel Muñoz Roberto BarberaVinícius Nascimento Vítor Santos Costa

Hope everyone related to task 3.3 attend the 1st Grid School in November at Rio de Janeiro!!

More details on the apps presented here will be found in the final report D3.1.2 at www.eu-eela.org

Task 3.3: Additional Applications

Documents

Transcript of Task 3.3: Additional Applications