STRUCTURAL BIOLOGY Structure of the cold- and menthol ... · STRUCTURAL BIOLOGY Structure of the...

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STRUCTURAL BIOLOGY Structure of the cold- and menthol- sensing ion channel TRPM8 Ying Yin, 1 * Mengyu Wu, 2 * Lejla Zubcevic, 1 William F. Borschel, 1 Gabriel C. Lander, 2 Seok-Yong Lee 1 Transient receptor potential melastatin (TRPM) cation channels are polymodal sensors that are involved in a variety of physiological processes. Within the TRPM family, member 8 (TRPM8) is the primary cold and menthol sensor in humans. We determined the cryoelectron microscopy structure of the full-length TRPM8 from the collared flycatcher at an overall resolution of ~4.1 ångstroms. Our TRPM8 structure reveals a three-layered architecture. The amino-terminal domain with a fold distinct among known TRP structures, together with the carboxyl-terminal region, forms a large two-layered cytosolic ring that extensively interacts with the transmembrane channel layer.The structure suggests that the menthol-binding site is located within the voltage-sensorlike domain and thus provides a structural glimpse of the design principle of the molecular transducer for cold and menthol sensation. T he transient receptor potential melastatin (TRPM) family, part of the TRP protein sup- erfamily, is composed of eight members, TRPM1 to TRPM8, and is involved in var- ious processes including temperature sen- sing, ion homeostasis, and redox sensing (1, 2). The TRPM8 channel cDNA was cloned and char- acterized as the long-sought-after cold and men- thol sensor (3, 4). Studies of TRPM8-deficient mice showed that the channel is required for environ- mental cold sensing (57) and that it is the prin- cipal mediator of menthol-induced analgesia of acute and inflammatory pain (8). Therefore, TRPM8 is a therapeutic target for treatment of cold-related pain, chronic pain, and migraine (9, 10). In addition to cold and menthol, TRPM8 is sensitive to voltage and phosphatidylinositol-4,5- biphosphate (PIP 2 )(11, 12). The molecular land- scape of channel sensitization is shaped by the interplay between these four factors, suggesting that TRPM8 is a polymodal sensor that can in- tegrate multiple chemical and physical stimuli into cellular signaling (11, 13). Several thermody- namic models have been put forth to address the mechanism of polymodal sensing by TRPM8 (1416), but mechanistic understanding of poly- modal sensing by TRPM8 remains limited. All members of the TRPM family contain a large N-terminal region (~700 amino acids) that comprises four regions of high homology (mela- statin homology regions, MHRs) (1). These MHR domains appear to be important for channel as- sembly and trafficking, but their functional roles are not known (17). TRPM8 was also predicted to contain a putative C-terminal coiled coil that is important for channel assembly, trafficking, and function (17, 18). Extensive electrophysiological and biochemical studies have identified residues involved in ligand binding, and homology models have attempted to provide a structural context for their locations (1922). However, in the absence of a structure, these predictions were speculative, and the mech- anism of menthol-dependent TRPM8 gating re- mained unclear. We conducted structural studies of full-length TRPM8 from the collared flycatcher Ficedula albicollis (TRPM8 FA ) using cryoelectron micros- copy (cryo-EM). TRPM8 FA is highly homologous to human and chicken TRPM8 (83 and 94% se- quence identity, respectively; fig. S1), which are cold- and menthol-sensitive (14, 20). To prevent proteolysis, we introduced three mutations into TRPM8 FA (Phe 535 Ala, Tyr 538 Asp, and Tyr 539 Asp). When expressed in human embryonic kid- ney 293 (HEK293) cells, both the wild-type and the mutant channels exhibited similar menthol- evoked currents and calcium influx, indicating that the mutations do not appreciably affect TRPM8 FA function (fig. S2). Notably, the half- maximal effective concentration value and the current-voltage relationship of TRPM8 FA for menthol are comparable to those of human and chicken TRPM8 (14, 20). TRPM8 FA was frozen in vitreous ice and im- aged using a Titan Krios transmission electron microscope with a K2 Summit direct electron detector (see Methods and fig. S3). The final three- dimensional (3D) reconstruction was resolved to an overall resolution of ~4.1 Å, with local resolu- tions ranging from ~3.8 Å at the core to ~8 Å at the periphery (Fig. 1 and fig. S3). The quality of the map allowed for de novo model building (see materials and methods) of 75% of the TRPM8 FA polypeptide (fig. S4 and table S1). The final mod- el for TRPM8 FA contains amino acids 122 to 1100 with multiple loops missing. Several regions (three b strands in MHRs, C-terminal domain helix 1, and the C-terminal coiled coil) are built as polyalanine (see materials and methods). The TRPM8 FA homotetramer is shaped like a three-layered stack of tetragonal bricks with di- mensions of approximately 110 Å by 110 Å by 125 Å (Fig. 1, A and B). The top layer comprises the transmembrane channel domain (TMD) and the lower two layers comprise the cytosolic domain (CD). Each protomer contains a large N-terminal region consisting of MHR1 to 4, a transmembrane channel region, and a C-terminal region (Fig. 1, C and D). The TMs of TRPM8 FA assume a fold similar to that of TRPV1 and TRPV2, with a voltage-sensorlike domain (VSLD) made up of transmembrane helical segments S1 to S4, a pore domain formed by S5 and S6 helices, and one pore helix (23, 24) (Figs. 1 and 2). Similar to previously determined TRPV structures, the TRPM8 FA TMD exhibits a domain-swapped arrangement, with the VSLD of one protomer interacting with the pore domain of the neighboring protomer. However, the TMD of TRPM8 FA has three features that are distinct from other TRP ion channel architectures. First, relative to the structure of apo TRPV1, the pore helix of TRPM8 FA is positioned ~12 Å farther away from the central axis, tilted by ~8°, and translated toward the extracellular side by ~5 Å (Fig. 2, A and B). The putative selectivity filter is poorly resolved in the cryo-EM density map, which prevented accurate model building in this region (fig. S5). Sequence comparison with TRPV1 shows that TRPM8 lacks the turret connecting S5 and the pore helix, instead containing a much longer pore loop (fig. S5). Given the differences in the pore helix position and the sequence surround- ing the selectivity filter, we speculate that the TRPM8 selectivity filter adopts an organization that is distinct from that of TRPV1. The second distinguishing feature of TRPM8 FA is the absence of nona-helical elements (e.g., 3 10 or p helices) in its TMs, which in other TRP channels were pro- posed to provide helical bending points important for channel gating (23, 25). In TRPM8 FA , a straight a-helical S4 is connected to a-helical S5 via a sharp turn induced by a conserved proline resi- due (Fig. 2, C to E). The lack of a bending point in S5 calls into question whether TRPM8 FA pos- sesses an S4-S5 linker, which is the structural element critical for vanilloid-dependent TRPV1 gating (26); however, it is possible that a transi- tion from a to p helix in the TRPM8 FA S5 may occur during gating, as was suggested for TRPV2 (23). Despite the absence of an obvious S4-S5 linker, TRPM8 FA nonetheless forms a domain- swapped tetramer, which is in stark contrast to the calcium-activated K + channel Slo1, where a similarly short S4-S5 linker prevents formation of a domain-swapped tetramer (27). The overlay of TRPM8 FA and TRPV1 protomers reveals that the C-terminal part of TRPM8 FA S4 is longer and straight such that it can connect with S5 to achieve a domain-swapped configuration. Fur- thermore, the sharp turn that connects the a- helical S4 and S5 results in a tilt of S5, giving rise to the distinct position of the pore helix as compared to TRPV1 (Fig. 2, B and C). Third, RESEARCH Yin et al., Science 359, 237241 (2018) 12 January 2018 1 of 5 1 Department of Biochemistry, Duke University School of Medicine, Durham, NC 27710, USA. 2 Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. *These authors contributed equally to this work. Corresponding author. Email: [email protected] (S.-Y.L.); [email protected] (G.C.L.) on August 26, 2020 http://science.sciencemag.org/ Downloaded from

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Page 1: STRUCTURAL BIOLOGY Structure of the cold- and menthol ... · STRUCTURAL BIOLOGY Structure of the cold- and menthol-sensing ion channel TRPM8 Ying Yin, 1* Mengyu Wu,2* Lejla Zubcevic,

STRUCTURAL BIOLOGY

Structure of the cold- and menthol-sensing ion channel TRPM8Ying Yin,1* Mengyu Wu,2* Lejla Zubcevic,1 William F. Borschel,1

Gabriel C. Lander,2† Seok-Yong Lee1†

Transient receptor potential melastatin (TRPM) cation channels are polymodal sensorsthat are involved in a variety of physiological processes. Within the TRPM family,member 8 (TRPM8) is the primary cold and menthol sensor in humans. We determinedthe cryo–electron microscopy structure of the full-length TRPM8 from the collaredflycatcher at an overall resolution of ~4.1 ångstroms. Our TRPM8 structure reveals athree-layered architecture. The amino-terminal domain with a fold distinct among knownTRP structures, together with the carboxyl-terminal region, forms a large two-layeredcytosolic ring that extensively interacts with the transmembrane channel layer. Thestructure suggests that the menthol-binding site is located within the voltage-sensor–likedomain and thus provides a structural glimpse of the design principle of the moleculartransducer for cold and menthol sensation.

The transient receptor potential melastatin(TRPM) family, part of the TRP protein sup-erfamily, is composed of eight members,TRPM1 to TRPM8, and is involved in var-ious processes including temperature sen-

sing, ion homeostasis, and redox sensing (1, 2).The TRPM8 channel cDNAwas cloned and char-acterized as the long-sought-after cold andmen-thol sensor (3, 4). Studies of TRPM8-deficientmiceshowed that the channel is required for environ-mental cold sensing (5–7) and that it is the prin-cipal mediator of menthol-induced analgesiaof acute and inflammatory pain (8). Therefore,TRPM8 is a therapeutic target for treatment ofcold-related pain, chronic pain, and migraine(9, 10).In addition to cold and menthol, TRPM8 is

sensitive to voltage and phosphatidylinositol-4,5-biphosphate (PIP2) (11, 12). The molecular land-scape of channel sensitization is shaped by theinterplay between these four factors, suggestingthat TRPM8 is a polymodal sensor that can in-tegrate multiple chemical and physical stimuliinto cellular signaling (11, 13). Several thermody-namic models have been put forth to addressthe mechanism of polymodal sensing by TRPM8(14–16), but mechanistic understanding of poly-modal sensing by TRPM8 remains limited.All members of the TRPM family contain a

large N-terminal region (~700 amino acids) thatcomprises four regions of high homology (mela-statin homology regions, MHRs) (1). These MHRdomains appear to be important for channel as-sembly and trafficking, but their functional rolesare not known (17). TRPM8 was also predicted tocontain a putative C-terminal coiled coil that is

important for channel assembly, trafficking, andfunction (17, 18).Extensive electrophysiological and biochemical

studies have identified residues involved in ligandbinding, and homology models have attemptedto provide a structural context for their locations(19–22). However, in the absence of a structure,these predictions were speculative, and the mech-anism of menthol-dependent TRPM8 gating re-mained unclear.We conducted structural studies of full-length

TRPM8 from the collared flycatcher Ficedulaalbicollis (TRPM8FA) using cryo–electronmicros-copy (cryo-EM). TRPM8FA is highly homologousto human and chicken TRPM8 (83 and 94% se-quence identity, respectively; fig. S1), which arecold- and menthol-sensitive (14, 20). To preventproteolysis, we introduced three mutations intoTRPM8FA (Phe

535→Ala, Tyr538→Asp, and Tyr539→Asp). When expressed in human embryonic kid-ney 293 (HEK293) cells, both the wild-type andthe mutant channels exhibited similar menthol-evoked currents and calcium influx, indicatingthat the mutations do not appreciably affectTRPM8FA function (fig. S2). Notably, the half-maximal effective concentration value and thecurrent-voltage relationship of TRPM8FA formenthol are comparable to those of human andchicken TRPM8 (14, 20).TRPM8FA was frozen in vitreous ice and im-

aged using a Titan Krios transmission electronmicroscope with a K2 Summit direct electrondetector (seeMethods and fig. S3). The final three-dimensional (3D) reconstruction was resolved toan overall resolution of ~4.1 Å, with local resolu-tions ranging from ~3.8 Å at the core to ~8 Å atthe periphery (Fig. 1 and fig. S3). The quality ofthe map allowed for de novomodel building (seematerials and methods) of 75% of the TRPM8FApolypeptide (fig. S4 and table S1). The final mod-el for TRPM8FA contains amino acids 122 to 1100with multiple loops missing. Several regions(three b strands in MHRs, C-terminal domain

helix 1, and the C-terminal coiled coil) are built aspolyalanine (see materials and methods).The TRPM8FA homotetramer is shaped like a

three-layered stack of tetragonal bricks with di-mensions of approximately 110Å by 110Å by 125Å(Fig. 1, A and B). The top layer comprises thetransmembrane channel domain (TMD) and thelower two layers comprise the cytosolic domain(CD). Each protomer contains a large N-terminalregion consisting ofMHR1 to 4, a transmembranechannel region, and a C-terminal region (Fig. 1, Cand D).The TMs of TRPM8FA assume a fold similar to

that of TRPV1 and TRPV2,with a voltage-sensor–like domain (VSLD) made up of transmembranehelical segments S1 to S4, a pore domain formedby S5 and S6 helices, and one pore helix (23, 24)(Figs. 1 and 2). Similar to previously determinedTRPV structures, the TRPM8FA TMD exhibits adomain-swapped arrangement, with the VSLD ofone protomer interacting with the pore domainof the neighboring protomer. However, the TMDof TRPM8FA has three features that are distinctfrom other TRP ion channel architectures. First,relative to the structure of apo TRPV1, the porehelix of TRPM8FA is positioned ~12 Å fartheraway from the central axis, tilted by ~8°, andtranslated toward the extracellular side by ~5 Å(Fig. 2, A and B). The putative selectivity filter ispoorly resolved in the cryo-EMdensitymap,whichprevented accurate model building in this region(fig. S5). Sequence comparison with TRPV1 showsthat TRPM8 lacks the turret connecting S5 andthe pore helix, instead containing a much longerpore loop (fig. S5). Given the differences in thepore helix position and the sequence surround-ing the selectivity filter, we speculate that theTRPM8 selectivity filter adopts an organizationthat is distinct from that of TRPV1. The seconddistinguishing feature of TRPM8FA is the absenceof non–a-helical elements (e.g., 310 or p helices)in its TMs, which in other TRP channels were pro-posed to provide helical bending points importantfor channel gating (23, 25). In TRPM8FA, a straighta-helical S4 is connected to a-helical S5 via asharp turn induced by a conserved proline resi-due (Fig. 2, C to E). The lack of a bending point inS5 calls into question whether TRPM8FA pos-sesses an S4-S5 linker, which is the structuralelement critical for vanilloid-dependent TRPV1gating (26); however, it is possible that a transi-tion from a to p helix in the TRPM8FA S5 mayoccur during gating, as was suggested for TRPV2(23). Despite the absence of an obvious S4-S5linker, TRPM8FA nonetheless forms a domain-swapped tetramer, which is in stark contrast tothe calcium-activated K+ channel Slo1, where asimilarly short S4-S5 linker prevents formationof a domain-swapped tetramer (27). The overlayof TRPM8FA and TRPV1 protomers reveals thatthe C-terminal part of TRPM8FA S4 is longer andstraight such that it can connect with S5 toachieve a domain-swapped configuration. Fur-thermore, the sharp turn that connects the a-helical S4 and S5 results in a tilt of S5, givingrise to the distinct position of the pore helix ascompared to TRPV1 (Fig. 2, B and C). Third,

RESEARCH

Yin et al., Science 359, 237–241 (2018) 12 January 2018 1 of 5

1Department of Biochemistry, Duke University School ofMedicine, Durham, NC 27710, USA. 2Department ofIntegrative Structural and Computational Biology, TheScripps Research Institute, La Jolla, CA 92037, USA.*These authors contributed equally to this work.†Corresponding author. Email: [email protected](S.-Y.L.); [email protected] (G.C.L.)

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Yin et al., Science 359, 237–241 (2018) 12 January 2018 2 of 5

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Fig. 1. Overall architecture of TRPM8. (A) Cryo-EM reconstruction and (B) model of TRPM8 viewed from the extracellular side (left), from themembrane plane (middle), and from the cytosolic side (right). (C) Topology diagram delineating the protein domains with secondary structure elements.(D) Detailed view of the atomic model of the TRPM8 protomer.

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whereas TRPV channels have a cytosolic pre-S1helix, TRPM8FA contains three additional helicesbetween S1 and the cytosolic pre-S1 helix in theputative membrane region: a helix-turn-helix(HTH) followed by an interfacial helix that con-

nects to S1. We term this structural motif, includ-ing the cytosolic pre-S1 helix, the “pre-S1 domain.”The C-terminal portions of the four a-helical

S6s are in proximity of each other, providing aconstriction point termed the S6 gate (Fig. 2G

and fig. S5). The Leu973 residues on each proto-mer form a tight constriction, with diagonally op-posing residues distanced 5.3 Å apart, suggestingthat our structure represents a nonconductive con-formation (Fig. 2, G, H, and I).The cytoplasmic domain (CD) is composed of

the N-terminal domain (NTD) and the C-terminaldomain (CTD) (Fig. 3A). The NTD is composed offourMHRs (MHR1 toMHR4).MHR1 andMHR2,along with a part of the pre-MHR region, form asingle domain (MHR1/2) with an a/b fold (Fig.3D). Unlike a typical a/b fold of five b strands sur-rounded by a helices, MHR1/2 contains a largeparallel b sheet composed of about 10 b strandssandwiched by about four a helices on each side.The pre-MHRand the tip ofMHR1/2 are notwellresolved in the reconstruction, precluding modelbuilding around this region (Fig. 3 and fig. S4).MHR3 and MHR4 are mostly made up of helix-turn-helix (HTH) motifs, but unlike the ankyrinrepeats in TRPV channels, the HTHs in MHR3and MHR4 do not contain hairpin-like protrud-ing loops. The HTHs within MHR3 stack in asequential fashion, giving rise to the angled po-sition of MHR1/2 relative to MHR4, and result-ing in the L-shape of the protomer (Figs. 1D and3, A and C). The MHR4 domain, located belowthe VSLD, consists of five (HTH4 to HTH8) non-sequentially stacked HTH motifs (Fig. 3B). TheCTD is composed of three helices that are locatedC-terminal to the TRP domain (Fig. 3A). The firstCTD helix (CTDH1) extends from the TRP do-main. It then connects to the second CTD helix(CTDH2) via a long loop, which is positionedbelow HTH6 and HTH7 of MHR4, and runs al-most parallel with the TRP domain (Fig. 3, A andB). The C-terminal region of the CTDH2 pointstoward the cytoplasmic cavity and connects to atetrameric coiled coil (CC) at the central axis (Fig.3, A and B). The limited resolution of the cryo-EM density around the CC prevents accuratemodeling of this region, but the relatively short(~25 amino acids) and parallel architecture of theTRPM8FA CC contrasts with the long (>50 aminoacids), antiparallel architecture observed in theCC fragment structure of TRPM7 (28).In contrast to TRPV1, TRPM8FA makes exten-

sive intra- and intersubunit interactions (Fig. 3E).First, while the interaction between the TMD andCD is primarily mediated by the interfacial TRPdomain in TRPV1, in TRPM8FA the pre-S1 do-main establishes additional TMD-CD interactionsthrough contacts with the tip of HTH7b inMHR4from the adjacent subunit (Fig. 3F and fig. S6, Aand B). Second, the CTDH2 runs parallel to theTRP domain but is translated ~29 Å toward thecytosolic side (Fig. 3G), positioned beneathMHR4and contacting the MHR1/2 of the adjacent sub-unit (Fig. 3G and fig. S6, C and D). The CTDH2 istherefore in contact with both the top and thebottom layers of the cytoplasmic ring. Based on itsposition at this interlayer and intersubunit nexus,the CTDH2 might have a role in channel gatingas well as cytoplasmic ring assembly. Third, inthe bottom layer of the cytoplasmic ring, thetips of two HTH motifs (HTH2a and HTH2b)from MHR3 and the loop of MHR1/2 from the

Yin et al., Science 359, 237–241 (2018) 12 January 2018 3 of 5

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Fig. 2. Comparison of the transmembrane domain in TRPM8 and TRPV1. (A) View down thechannel pore from the extracellular side. Dashed red lines indicate the selectivity filter and thepore loop linking the pore helix (PH) and S6 in TRPM8, which were not built in the structure owingto the lack of well-resolved cryo-EM density in this region (see fig. S5B). In all panels, the “+”indicates the center of the fourfold symmetry axis. (B) Overlay of the pore domains of TRPM8(red) and the apo TRPV1 (blue) (PDB ID: 3J5P).The pore helix in TRPM8 is located farther away fromthe ion permeation pathway. (C) Comparison of the junction between S4 and S5. In TRPM8, S5 isstraight and fully a-helical, and connected to S4 via a sharp turn, while an S4-S5 linker is identified inTRPV1. The overlay illustrates the differing arrangement of the domain swap between TRPM8 andTRPV1. (D to F) The non–a-helical features in the S4 (D), S5 (E) and S6 (F) of TRPV1 (blue) areabsent in those of TRPM8 (red). The differences in tilt of helices originating at helical bending pointsare indicated with dashed lines. (G and H) Comparison of the pores of the TRPM8 and the apoTRPV1 channels, showing that the S6 gate in TRPM8 is formed by Leu973. (I) The S6 gate of theTRPM8 structure viewed from the intracellular side. Leu973 is shown in sphere representation.

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neighboring protomer establish an intersub-unit network of interactions (Fig. 3H and fig.S6D). These extensive interfacial interactionsare the distinguishing features of TRPM8, whichmay be important for either cold- or menthol-dependent channel gating.Unlike TRPV channels, TRPM8 contains argi-

nine residues in S4 of the VSLD (Fig. 4A). Arg842 in

S4 and Lys856 in S5 (Arg841 and Lys855 in TRPM8FA,respectively) contribute to the voltage dependencein human TRPM8 (13). In TRPM8FA, many aro-matic and aliphatic residueswithin the VSLD forma large hydrophobic “seal” (Fig. 4A) between theextracellular side and themiddle of themembrane.Between this hydrophobic seal and the TRP do-main, there is a large cavity we term the VSLD

cavity, which is also present in TRPV channels(23, 26). In the TRPM8FA structure, Arg

841 pointstoward the center of the VSLD cavity, wherethree acidic residues form a negatively chargedcluster. Although we cannot unambiguously as-sign the interaction pairs between the chargedresidues, this arrangement is more reminiscentof a canonical voltage sensor than the VSLD ofTRPV1 (Fig. 4A) (24, 29). We also observed thatLys855 is located at the beginning of S5 outsidethe VSLD, but it is unclear how this residue con-tributes to voltage sensing. Despite the similar-ities in the positions of charged residues in theTRPM8FA VSLD and the canonical voltage sen-sor, we postulate that the degree and the type ofvoltage-sensing motion in TRPM8 are differentfrom those of canonical voltage-gated ion chan-nels owing to the large size of the hydrophobicseal and the small gating charge (~1 eo) asso-ciated with voltage gating of TRPM8 (13).Many studies have been conducted to eluci-

date the mechanism of TRPM8 activation by lig-and binding. It has been reported that Arg842

(Arg841 in TRPM8FA) also affects menthol- andcold-dependent activation of human TRPM8.Based on [3H]menthol binding studies, this resi-due appears to interact with menthol (13). Resi-dues Tyr745 and Tyr1005 (Tyr1004 in TRPM8FA) wereshown to be involved in menthol binding, but notcold sensing (19). Tyr745 was also found to be crit-ical for binding of the inhibitor SKF96365 (21),further indicating that this residue is central toligand-dependent gating in TRPM8. In addition,studies have identified Asn799, Asp802, and Gly805

as important for icilin binding (20). It was pre-dicted that these ligand-binding sites were alllocated at the membrane-facing region of S2-S3 (20–22). We can now place these functionalstudies in the proper structural context. Notably,residue Tyr745 is located at the middle of S1, di-rected toward the center of the VSLD cavity (Fig.4B). This contrasts with its previously predictedlocation in the membrane-facing side of S2. Fur-thermore, all residues implicated in mentholbinding (Tyr745, Arg841, and Tyr1004) are locatedin the VSLD cavity (Fig. 4B). We propose thatthe VSLD cavity is the binding site for mentholand menthol-like molecules in TRPM8. Notably,the corresponding cavity in TRPV channels hasbeen implicated in lipid binding (23, 26) andmod-ulation of channel gating (23). We propose thatmenthol binding in the VSLD cavity in TRPM8mightmodulate the S6 gate through interactionswith the TRP domain.PIP2 is necessary for TRPM8 activation, as

depletion of PIP2 has been shown to desensitizethe channel (11–13). Furthermore, recent studieshave suggested that PIP2 alone can activate TRPM8(11–13). Mutagenesis studies identified Lys995,Arg998, and Arg1008 (Lys994, Arg997, and Arg1007

in TRPM8FA) as important for PIP2-dependentchannel gating (11). All of these residues are lo-cated in the TRP domain: Arg1007 is located onthe side of the TRP domain facing the VSLD cav-ity, and Lys994 and Arg997 are located on the sideof the TRP domain facing the pre-S1 domain andHTH6 in MHR4 from the neighboring subunit

Yin et al., Science 359, 237–241 (2018) 12 January 2018 4 of 5

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S3 (A)

S2 (A)

HTH7a

HTH7b

HTH8a

HTH7a

MHR4 (B) MHR4 (A)

CTDH2 (A)

MHR1/2 (B)

HTH7a

HTH7b

HTH7aHTH6a

α3

CTDH2 (A)

MHR1/2 (B) MHR1/2 (A)

MHR3 (A)

CC (A)

MHR1/2 (B)

MHR3 (A)

MHR4 (A)

MHR3 (B)

MHR4 (B)

pre-S1 (A)

CTDH1 (A)

TRP (A)

CTDH2 (A)

Fig. 3. The cytoplasmic domain of TRPM8. (A) The organization of the N- and C-terminalregions of the channel within the cytoplasmic domain (CD). (B to D) Close-up views of MHR4(B), MHR3 (C), and the single-domain MHR1/2 (D) that comprise the N-terminal domain. (E) Surfacerepresentation of the interactions between different domains from the neighboring subunits (A) and(B). (F to H) Close-up views of the domain interfaces that contribute to communication between theTMD and CTD (F), between the top and bottom layers of the cytoplasmic ring (G), and betweenprotomers in the bottom layer of the cytoplasmic ring (H).

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(fig. S7). Our structure suggests that the VSLDcavity is unlikely to bind PIP2, because the netcharge of its interior is negative and this cavity isnot large enough to accommodate both mentholand PIP2. The reported effects of mutations toArg1008 may reflect downstream conformationalchanges following PIP2 binding. Notably, we foundthat the interface between the TRP domain, thepre-S1 domain, and MHR4 contains many basicamino acid residues, including the previouslyidentified Lys994 and Arg997 (fig. S7). We specu-late that PIP2 binds at this interfacial site, whereit could modulate the position of the TRP do-main to enable a nondesensitized state. The dis-tinct location of this putative PIP2 binding sitecompared to TRPV1 and TRPML reflects the di-verse effects of PIP2 on TRP channels (25, 26).In the context of previous mutagenesis data,

our structural analyses suggest that the ligand-dependent gating mechanism of TRPM8 differs

substantially from TRPV1. In TRPV1, the bindingof vanilloid to the S4b and the S4-S5 linker isthought to induce a “swivel” motion in the TRPdomain, which would pull on S6 to open the S6gate (23, 30). We suggest thatmenthol binds in theVSLD cavity, which is distinct from the vanilloid-binding site in TRPV1.Whereas vanilloid-mediatedgating involves non–a-helical elements (310 and phelices) and an S4-S5 linker, neither of these struc-tural features appear to be present in the confor-mational state of our TRPM8FA structure. Thus, wespeculate that ligand-induced repositioning of theTRP domain in TRPM8 may directly lead to theopening of the S6 gate.Our observation of the extensive intersubunit

interactions between the TMD and the top layerof the CD ring leads us to speculate that thegating-related TRP domain motion may also in-volve the top layer of the CD ring (Fig. 3F andfig. S6B). Furthermore, the CTDH2, with its cen-

tral position within the CD and its link with theTRP domain, may be important for couplingthe movements of the TRP domain to those ofthe MHR elements and especially MHR4 (Fig. 3Gand fig. S6D). In addition, the tetrameric coiledcoil located in the bottom layer ring may play arole in regulating the position of CTDH2.

REFERENCES AND NOTES

1. A. Fleig, R. Penner, Trends Pharmacol. Sci. 25, 633–639 (2004).2. A. A. Farooqi et al., Immunogenetics 63, 773–787 (2011).3. D. D. McKemy, W. M. Neuhausser, D. Julius, Nature 416, 52–58

(2002).4. A. M. Peier et al., Cell 108, 705–715 (2002).5. D. M. Bautista et al., Nature 448, 204–208 (2007).6. A. Dhaka et al., Neuron 54, 371–378 (2007).7. R. W. Colburn et al., Neuron 54, 379–386 (2007).8. B. Liu et al., Pain 154, 2169–2177 (2013).9. M. D. Andrews et al., ACS Med. Chem. Lett. 6, 419–424 (2015).10. A. D. Weyer, S. G. Lehto, Pharmaceuticals (Basel) 10, 37

(2017).11. T. Rohács, C. M. Lopes, I. Michailidis, D. E. Logothetis,

Nat. Neurosci. 8, 626–634 (2005).12. B. Liu, F. Qin, J. Neurosci. 25, 1674–1681 (2005).13. T. Voets, G. Owsianik, A. Janssens, K. Talavera, B. Nilius,

Nat. Chem. Biol. 3, 174–182 (2007).14. T. Voets et al., Nature 430, 748–754 (2004).15. D. Baez, N. Raddatz, G. Ferreira, C. Gonzalez, R. Latorre,

Curr. Top. Membr. 74, 51–87 (2014).16. D. E. Clapham, C. Miller, Proc. Natl. Acad. Sci. U.S.A. 108,

19492–19497 (2011).17. C. B. Phelps, R. Gaudet, J. Biol. Chem. 282, 36474–36480

(2007).18. P. R. Tsuruda, D. Julius, D. L. Minor Jr.,Neuron 51, 201–212 (2006).19. M. Bandell et al., Nat. Neurosci. 9, 493–500 (2006).20. H. H. Chuang, W. M. Neuhausser, D. Julius, Neuron 43,

859–869 (2004).21. A. Malkia, M. Pertusa, G. Fernández-Ballester,

A. Ferrer-Montiel, F. Viana, Mol. Pain 5, 62 (2009).22. A. Pedretti, C. Marconi, I. Bettinelli, G. Vistoli, Biochim.

Biophys. Acta 1788, 973–982 (2009).23. L. Zubcevic et al., Nat. Struct. Mol. Biol. 23, 180–186 (2016).24. M. Liao, E. Cao, D. Julius, Y. Cheng, Nature 504, 107–112 (2013).25. M. Hirschi et al., Nature 550, 411–414 (2017).26. Y. Gao, E. Cao, D. Julius, Y. Cheng, Nature 534, 347–351 (2016).27. X. Tao, R. K. Hite, R. MacKinnon, Nature 541, 46–51 (2017).28. Y. Fujiwara, D. L. Minor Jr., J. Mol. Biol. 383, 854–870 (2008).29. S. B. Long, X. Tao, E. B. Campbell, R. MacKinnon, Nature 450,

376–382 (2007).30. E. Cao, M. Liao, Y. Cheng, D. Julius, Nature 504, 113–118 (2013).

ACKNOWLEDGMENTS

Cryo-EM data were collected at The Scripps Research Institute(TSRI) electron microscopy facility. We thank Y. Zhang and H. Yang(Duke University) for providing access to their calcium imagingapparatus and guidance to calcium imaging experiments. We thankJ.-C. Ducom (TSRI High Performance Computing facility) forcomputational support, B. Anderson for microscope support, andM. Herzik and S. Chowdhury for helpful discussion and training. Wethank Z. Johnson for advice on sample freezing. This work wassupported by the National Institutes of Health (grants R35NS097241to S.-Y.L., DP2EB020402 to G.C.L.). G.C.L is supported as a SearleScholar and a Pew Scholar. Computational analyses ofEM data were performed using shared instrumentation fundedby NIH grant S10OD021634. The coordinates are deposited in theProtein Data Bank with the PDB ID 6BPQ, and the electron densitymaps have been deposited in EMDB with the ID EMD-7127.

SUPPLEMENTARY MATERIALS

www.sciencemag.org/content/359/6372/237/suppl/DC1Materials and MethodsFigs. S1 to S7Tables S1References (31–50)

3 November 2017; accepted 27 November 2017Published online 7 December 201710.1126/science.aan4325

Yin et al., Science 359, 237–241 (2018) 12 January 2018 5 of 5

Kvchim

S4

S3bS1

S2

S3a

TRPM8

S4

S3S1

S2

R828

R816

R850

R841

D759

D802

D781

E782

S4

Y747474744747474747477477777777 5555555555555555Y745

S3

S1

S2

S4

S3

S1

S2

TRPTRP

L1L1LL1L1L1L1L11L10L1110L100L11L11111111111 08L1008

L1008Y1004

Y745

N79N7NNNNNN7N7N7N7N7NNNN7NNNNNN77NNNNNN 9N799N79NNNN79NNNN7N79N79N79NNN7N79NN7N79N77NN7 9999999999999999999999N799

0800D8080808080D8080D8D8080DD80D8D80D888000800000D800800D8D8D80D800D800D 00D8022222222222222222222222D802

D8DD8D80DDD80D8D8880800D80D80D880D8D808088DDDD8800222222222222222222222222222222D802

A805A80A80A80A80A80A80A80A80A80A80A80A80A800A80A80A8000A80A8A800800A80A 0A80800AAAAA 0AAAA8055555555555555555555A805

R841

R84884844444484848484444R8444R8448444R8448R84R84R844844888R8R84RRR8RR8 111111111111111111R841

40°

S5

S4-S5

K855

S2

S1

S4

S3

TRPV1

S4-S5

Fig. 4. The voltage-sensor–like domain (VSLD) and the putative menthol-binding site in theVSLD cavity. (A) Comparison of the VSLD in TRPM8 (blue) with the canonical voltage-sensordomain in the Kvchim channel (green) (PDB ID: 2R9R) and the VSLD of TRPV1 (purple) (PDB ID:3J5P). A gating charge Arg841 in the VSLD of TRPM8 is near three negatively charged amino acidsbelow a large hydrophobic seal (spheres in bright orange) in TRPM8 (left). Many gating chargearginines in S4 of Kvchim are located above and below a small hydrophobic seal (spheres in brightorange) and interact with negatively charged amino acids (middle). The interior of the VSLD ofTRPV1 is lined with hydrophobic and polar amino acids. (B) Residues critical for the sensitivityof TPRM8 to menthol (shown in green stick representation) were mapped to S1 (Tyr745), S4 (Arg841),and the TRP domain (Tyr1004). Residues implicated in icilin sensitivity of TRPM8 (yellow stickrepresentation) were mapped to S3 (Asn799 and Asp802). All of these residues point toward theVSLD cavity. Single-letter abbreviations for the amino acid residues are as follows: A, Ala; D, Asp;E, Glu; K, Lys; L, Leu; N, Asn; R, Arg; and Y, Tyr.

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Structure of the cold- and menthol-sensing ion channel TRPM8Ying Yin, Mengyu Wu, Lejla Zubcevic, William F. Borschel, Gabriel C. Lander and Seok-Yong Lee

originally published online December 7, 2017DOI: 10.1126/science.aan4325 (6372), 237-241.359Science 

, this issue p. 237, p. 228; see also p. 160Sciencecalcium-binding-induced conformational changes.sensing. The two distinct closed states of TRPM4, with and without calcium, reveal a calcium-binding site andarchitecture of the TRPM8 channel provides the framework for understanding the mechanisms of cold and menthol

). The three-layeredet al.solving the structures of TRPM8 and TRPM4, respectively (see the Perspective by Bae shed light on the general architecture of the TRPM subfamily byet al. and Autzen et al.with cardiovascular disorders. Yin

involved in many physiological processes. TRPM8 is the primary cold and menthol sensor, and TRPM4 is associated Transient receptor potential melastatin (TRPM) ion channels constitute the largest TRP subfamily and are

Architecture of the TRPM subfamily

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