SourceData – bridging scientific publishing and open science · SourceData – bridging...
Transcript of SourceData – bridging scientific publishing and open science · SourceData – bridging...
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Helmholtz Open Science WebinarsWebinar 44 – 19/ 25 April 2018
Dr. Thomas LembergerEMBO
SourceData – bridging scientific publishing and open science
1. Open Science2. SourceData3. Outlook
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1. Open science
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Data are from the Survey of scholarly communication tool usage. https://101innovations.wordpress.com/2016/04/04/support-for-open-science-in-eu-member-states/
Open Science
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Data & publishing: separate worlds
Database
Users
Res
earc
h da
ta
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Data & publishing: separate worlds
Database
Users
Res
earc
h da
ta
Journals
Res
earc
h da
ta
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Bridging publishing and open dataR
esea
rch
data
Journals
Databases
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What is a figure?
NEJM 2015, 372(1):3
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What is a figure?
NEJM 2015, 372(1):3
Clinical data (from 700 patients) converted into pixels…
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2. SourceData
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• Facilitate discovery and browsing of data and papers
sourcedata.embo.org
Making data d iscoverable
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• Facilitate discovery and browsing of data and papers
• Couple discoverability with data availability
sourcedata.embo.org
Making data d iscoverable
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• Facilitate discovery and browsing of data and papers
• Couple discoverability with data availability
• Bridge scientific publishing with open science
sourcedata.embo.org
Making data d iscoverable
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Liechti et al. 2017Nature Methods 14:1021
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Liechti et al. (2017). Nature Methods 14:1021
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DataSearch
sourcedata.embo.org
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DataSearch
sourcedata.embo.org
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Integration with data repositoriesPaper
https://wwwdev.ebi.ac.uk/biostudies/studies/S-SCDT-MSB-16-7412
SmartFigure
Database
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An AI approach to semantic analysis
Artificial neural network
Training set (20’000 examples)
SmartTag engine
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An AI approach to semantic analysis
Artificial neural network
Plain text (figure legend)
SmartTag:deep semantic interpretation
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An AI approach to semantic analysis
Artificial neural network
Plain text (figure legend)
SmartTag:deep semantic interpretation
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Machine Author
Manuscript
Knowledge
Disseminating knowledge
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3. Outlook
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Accelerating science with Open Science
Relia
bilit
yVa
lue
Peer
Rev
iew
Cura
tion
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Quality Open Science: how to make it work?
Relia
bilit
yVa
lue
Peer
Rev
iew
Cura
tion
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Quality Open Science: how to make it work?
Relia
bilit
yVa
lue
Peer
Rev
iew
Cura
tion
Journals
Distributed responsibilities:
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Quality Open Science: how to make it work?
Relia
bilit
yVa
lue
Peer
Rev
iew
Cura
tion
Journals
Institutions
Distributed responsibilities:
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Quality Open Science: how to make it work?
Relia
bilit
yVa
lue
Peer
Rev
iew
Cura
tion
Journals
Institutions
Individual researchers
Distributed responsibilities:
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Helmholtz Open Science WebinarsWebinar 44 – 19/ 25 April 2018
THANK YOU!