Sequencing and the GISAID EpiFlu...
Transcript of Sequencing and the GISAID EpiFlu...
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Sequencing and the GISAID EpiFluTM Database
Naomi Komadina www.influenzacentre.org
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EpiFlu Database training activities:
How to customise search results settings
How to search in GISAID
How to upload data to GISAID
How to retrieve sequences from the GISAID database (download)
How to blast a sequence
How to align sequences
How to create preliminary phylogenetic trees
How to download sequences & meta data
How to download an acknowledgement table
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Enter and
search in
GISAID
database
Upload your
sequences Tools
BLAST
Alignments
phylogenetic
analyses
downloads
Customise
your
search
results in
the
database
Create a
workset
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Customise Settings
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Search Functions
“A/Sydney/5/1997” “ A/South Australia/55/2014”
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Search Results
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Single Upload -1
Isolate
information
Sample & host
information
Institute
information
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Single Upload -2
antiviral
information
Antigenic
characterisation
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Single Upload -3
Unique identifier
Select gene
Add sequence
Select Select
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Isolate meta data
Acknowledgement Table
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Acknowledgements
Bioinformatics Institute, A*STAR,
Singapore
GISAID Database Technical Group
Berlin, Germany
The WHO Collaborating Centre for Reference & Research is supported
by the Australian Government Department of Health