ROB COOK CEORyurick Hristev Denis Lubjanski Bre[ Milford Gavin Kennedy Hamish Holewa Andrew White...
Transcript of ROB COOK CEORyurick Hristev Denis Lubjanski Bre[ Milford Gavin Kennedy Hamish Holewa Andrew White...
Node
ROBCOOKCEO
• Not-for-profitcompany
• Since2000• Staffsecondedfrommembers
• Assetsbelongtomembers
• Projectsexecutedbymembers
• eResearchinfrastructure
• NaAonalprojects–Nectar,RDS
QCIF: The Basics
QueenslandCyberInfrastructureFounda9on
Strategic Direc8ons
Lifesciencesandhealthinforma9cs
Environmentalandterrestrialinforma9cs …Otherdomains
Datainnova9on Skillsdevelopment
Accesstodigitalinfrastructure
Local Na9onal Commercial
Bioinforma8cs Services
• Shareddevelopment,opera9onsforQueenslandresearchNa9onalPlaJorms
• ArachnoserverandothersTools
• Storageandaccessforlargedatacollec9ons(genomes,images)Data
• Trainingprogramsformemberuniversi9esandBPA• Bioinforma9csskills,soNwareanddatacarpentrySkills
• Datachaperoningwithinterna9onalcollec9onsInterna9onalEngagement
• SpecialisedlifesciencesHPC,researchcloudcompu9ng(largememory)• Verylargestorage,dataaccess,analy9csInfrastructure
• Memberhealthandlifesciences,Queenslandhealth• Bioinforma9cs,biosta9s9cs,biodata
Expertconsul9ng
Pla?orms
q Developmentq Customisa9onq Hos9ngq Support
Characterisa9onVirtualLab(Monash)Med.data(Intersect)
GenomicsVirtualLab(VLSCI) Mul9omicsPlaJorm(BPA++)
Skill development
• ManymoreresearchersleveragingIT–skillsdevelopmentatscale
• Trainingforresearchersandtrainingmaterialstomatchdemand
• Threekeyareas:• Effec9veuseofcompu9nganddata,• Applica9onofbioinforma9cs• QRIScloudstorage,managementandcomputetools
• Integratedhigh-touchusersupportandservicedelivery
Be[erresearch
Skills
Support
Interna8onal – Data chaperoning
• GuidanceandsupporttohelpAustralianresearcherswiththeprocessofcura9ng,forma\ngandmanagingresearchdatafortransfertoexis9nginterna9onaldatarepositories
o Managementofsubmissionaccountso Helpdesko Submissiono Automa9on
TheBiomeofAustraliaSoilEnvironmentsMarineMicrobesGreatBarrierReef SpiderToxins
Archnoserver & Tox|Note
Themostcomprehensivecurateddatabaseofspidertoxins(GlennKing–UQ)
SubmitCross-
reference
What our members are telling us
• CustomisedPlaJorms• Abilitytoaccessacoresuiteoftools• AbilitytohaveplaJormscustomisedforspecificuse• Metagenomics,mul9-omics,sensi9vedataandimaging
• Skillsdevelopment• Empoweringbiologistsandclinicianstoharnesscomputa9on
• Consul9ngservices• Abilitytoengagebioinforma9ciansasapercentageofthetotalfull-9meequivalenttoworkonprojectsasneeded
• Inclusionofbioinforma9csskillsingrantapplica9ons
What our members are telling us (2)
• Lifesciencesspecialisedcomputeo Specialisedinfrastructuresuchasbigmemory,clustersinthecloud,highthroughputcompu9ng
o CloudtechnologiesforbigdatasuchasApacheSparkandHadoop
• Inconvenientlylargedatao Accesstodatacollec9onso Helpwithsubmissionsofdatatointerna9onalrepositories§ Largenumberofsubmissions§ Complexsubmissions§ Supportforbou9quecollec9ons
#1 Priority for Bioinforma8cs in Australia
• Fully-func9onalna9onalbioinforma9csnetwork
• Governance,charter,structureandplanStrategic
• Empowerscien9sts&clinicianstousena9onal&interna9onalplaJorms
• Hos9ng,support,training,customisa9on
PlaJormsandInfrastructure
• Datachaperoning• Omics
QCIFNode
THANK YOU QUESTIONS?
QCIF Structure
ServiceDelivery
DominiqueGorseAnneBernardPierreChaumeilXin-YiChuaAnneKunertNickRhodesJus9nSco[MikeThangMarkCroweKathyDallestIngridBaade
NigelWard
BelindaWeaverHoylenSue
MarliesHenkel(eRAUQ)CihanAtlinay(eRAUQ)NickHamilton(eRAUQ)MinhDinh(eRAUQ)DavidGreen(eRAUQ)
MarcusFitzpatrick(eRAGU)CollinStorlie(eRAJCU)JasonBell(eRACQU)
FrancisGacenga(eRAUSQ)
Outreach&Engineering
LifeScienceConsul9ng
StephenBird
StephenCrawleyAdrianLee
JayvanSchyndelMikeMallon
Mar9nNichollsRyurickHristevDenisLubjanskiBre[Milford
GavinKennedyHamishHolewaAndrewWhiteAndrewBrazza9Ma[MulhollandShiloBanihit
eResearch
Associate member
Compute
Associate member
• Computeanddatastoragetomeetmemberservicetransi9ontoQRIScloudandnewpartnerservices
• Reducedtotalcostofserviceopera9onstomembers• Trustedresilientlong-livedproduc9onservices• Servicesmee9ngdelivery,ease-of-useandqualityneedsofmembersandresearchcommuni9es
• Integra9onwithmemberservicedeliverytotheirresearchers
• Con9nualserviceimprovementandre-inven9on
• Seamlessintegra9onwithna9onalandcommercialdigitalinfrastructure
DATA
• Seamlessintegra9onbetweenpublica9ons,dataandresearchersacrosstheresearchlifecycle
• Maturedatacapture,ingest,cura9on,metadataannota9onandlife9memanagement
• Loca9onindependentdiscovery,iden9ty-dependentaccess,compute,collabora9onandsharing
• Reliable,secure,trustedandpreserved• FAIR–findable,accessible,interoperable,re-usable
• Bigdatascienceandanaly9cscapability• Informa9on,knowledgemanagement
Ac9veResearch
Share
Publish
Preserve
Metadata
Data
CaptureIngestAnaly9csManageAugment
ShareCollaborateDiscoverAccess
PublishCatalogueRe-useDistributeStandardise
ArchivePreserve
Discard