Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr....
-
date post
19-Dec-2015 -
Category
Documents
-
view
215 -
download
2
Transcript of Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr....
![Page 1: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/1.jpg)
Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives
Amira BarkalMentored by Dr. Gary Merrill
Biochemistry and Biophysics
![Page 2: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/2.jpg)
Carbonyls and Disease
1Toxicol Appl Pharmacol 2002 Nov 1;184(3):187-97.
•Degenerative brain disease• Irreversible tissue damage
•7th leading cause of death among Americans• Affects 5.1 million Americans
Alzheimer’s Disease
•Cytotoxic carbonyls in higheramounts in Alzheimer’s patients1
Oxidative stress
Tissue damage
![Page 3: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/3.jpg)
Carbonyls: Definition•Reactive
•Only aldehyde and ketone compounds
Aldehyde
Ketone
Carboxylic Acid
Ester
•Not esters in triglycerides•Not carboxylic acids in amino acids
![Page 4: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/4.jpg)
Carbonyl Function
•Reactive intermediates
A B C•Easy for the reaction to proceed
How do organisms control these carbonyl intermediates to prevent damage?
![Page 5: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/5.jpg)
Carbonyl Regulation
•Normally in very small amounts•0.1 % of the cytosol
•Reducing agents•Carbonyl reductases
Aldehyde or Ketone
Carbonyl
Reductase Alcohol
OH
R'R
H
Reactive More stable
![Page 6: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/6.jpg)
Studying Carbonyls
•Very hard to study•Small amounts•Reactive
•Many carbonyl metabalomics pathways undiscovered
•Not a determined protocol to study carbonyls from tissues
![Page 7: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/7.jpg)
Merrill Lab and Carbonyls
Thioredoxin Reductase
•Thioredoxin reductase (TR1)
• Reduces thioredoxin
• Part of thioredoxin pathway• Reduces disulfide bonds
•Discovered intrinsic carbonyl reducing capability• In vitro analysis2
2In vitro analysis performed by Cameron Long in Merrill Lab
![Page 8: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/8.jpg)
Merrill Lab and Carbonyls
vs.
TRnull liver
•Studies mice lacking TR1 in liver
•No TR in livers•60-fold higher levels Cbr3 mRNA levels
TR+ liver
•Wildtype TR levels• Wildtype carbonyl reductase 3
(Cbr3) mRNA levels
![Page 9: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/9.jpg)
Merrill Lab and Carbonyls
Aldehyde or Ketone
Thioredoxin
ReductaseAlcohol
OH
R'R
H
Aldehyde or Ketone
Thioredoxin
ReductaseAlcohol
OH
R'R
H
Wildtype— +TR
Mutant— -TR
Carbonyl
Reductase
![Page 10: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/10.jpg)
Goal
•Identify carbonyl compounds that accumulate in mutant mice because TR1 is missing
•Determine a general method by which carbonyls can be collected and identified from tissues
![Page 11: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/11.jpg)
2,4-Dinitrophenylhydrazine (DNPH)
NO2
NO2
NH
H2N
O
R2R1
N
R1
R1
NH
NO2
NO2
2,4-Dinitrophenylhydrazine Aldehyde or Ketone Stable Hydrazone
•Acidic conditions—1 M HCl•Must be used in great excess with tissues to ensure all carbonyls react
![Page 12: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/12.jpg)
Experimental Protocol
Wildtype or Mutant Liver
Flash freeze
Pulverize under liquid nitrogen
Methanolextract
Centrifuge
Methanol Insoluble Material
Methanol Soluble Material
Methanol Soluble Material
Treat with excess DNPH
SpinInsoluble
Hydrazones
Mass Spectrometry
Analysis
Resolubilize in New Solvent
Soluble Hydrazones
Remove Excess DNPH
![Page 13: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/13.jpg)
Removing Unreacted DNPH
Why?•Excess DNPH complicates mass spectrometry results because DNPH breakdown products would be identical to hydrazone breakdown products
Hypothesis: A resin treatment of soluble hydrazones will bind unreacted DNPH and allow the passage of
hydrazones.
![Page 14: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/14.jpg)
Dowex 50-X8 Ion Exchange Resin•Research3 indicates DNPH binds to ion exchange resins •Acidic conditions—DNPH positively charged
•Resin has sulfonates on bead with H+ bound•Resin exchanges DNPH cation for H+
3Journal of Chromatography, 626 (1992) 284-288 Elsevier Science Publishers B.V., Amsterdam
S
O
O
O-
H+
DNPH+
Dowex 50-X8 Resin Bead
![Page 15: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/15.jpg)
Criteria for Resin Removal Technique
1. Must bind DNPH under acidic conditions.
2. Must not bind hydrazones under acidic conditions.
![Page 16: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/16.jpg)
Resin Binding DNPH• Testing binding affinity• 2.5 mM solution of DNPH in EtOH and 1 M HCl• Passed through column of 0.5 mL activated Dowex resin
• DNPH is yellow• Peak absorbance at 362 nm
• Volumes (mL) of 2.5 mM DNPH solution passed through resin• Absorbance of run-off measured at 362 nm in spectrophotometer
![Page 17: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/17.jpg)
Dowex Resin DNPH Binding Affinity
1 2 3 4 5 6 7 8.5 10 12 14 16 18 200
5
10
15
20
25
30
Absorbance of DNPH in Run-off after Resin Treatment
Micromoles DNPH Added
Ab
sorb
ance
at
362
nm
![Page 18: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/18.jpg)
Criteria for Resin Removal Technique
1. Must bind DNPH under acidic conditions.
2. Must not bind hydrazones under acidic conditions.
![Page 19: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/19.jpg)
Resin Binding of Hydrazone
• Test the resin binding affinity for hydrazone
• Hydrazones of three model compounds formed and resolubulized in respective solvents
Menadione Pyruvate α-Ketoglutarate
![Page 20: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/20.jpg)
Resin Binding of HydrazoneHydrazone Staining:• Hydrazones turn a deep blue or brown in the presence of base (a full volume of 2 M NaOH)
• Hydrazones were stained with 2 M NaOH, and absorbances of 1:40 dilutions measured at peak wavelengths before and after resin treatment
• Percent recovery was calculated
Hydrazone Color in Presence of Base Peak Wavelength
Menadione Blue 592 nm
Pyruvic Acid Brown 395 nm
α-Ketoglutarate Brown 419 nm
![Page 21: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/21.jpg)
Menadione α-Ketoglutarate Pyruvic Acid0
10
20
30
40
50
60
70
80
90
100
97.8 % 89.7% 86.7%
Percent Recovery of Hydrazones after Resin Treatment
Perc
ent R
eten
tion
of H
ydra
zone
Recovery of Hydrazones after Resin Treatment
![Page 22: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/22.jpg)
Criteria for Resin Removal Technique
1. Must bind DNPH under acidic conditions.
2. Must not bind hydrazones under acidic conditions.
![Page 23: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/23.jpg)
Conclusions and Looking Ahead
• A viable solution for the removal of unreacted DNPH was determined• Mass spectrometry results obtained explained by Thi Nguyen• The method for harvesting carbonyls from mutant and wildtype livers is still being tested
Looking ahead to:• identifying a piece of the thioredoxin reductase pathway.• determining best method for measuring carbonyl levels and identities from tissues.
![Page 24: Removal of Unreacted Dinitrophenyl Hydrazine from Carbonyl Derivatives Amira Barkal Mentored by Dr. Gary Merrill Biochemistry and Biophysics.](https://reader036.fdocuments.us/reader036/viewer/2022081519/56649d2d5503460f94a0402f/html5/thumbnails/24.jpg)
Acknowledgements
HHMI
Cripps Undergraduate Research
URISC
Dr. Gary Merrill
Thi Nguyen
The Mass Spectrometry Lab
Dr. Fred Stevens
Dr. Kevin Ahern