References - research.vu.nl Reference.pdf · References 125 Blumstein, J., V. Faundez, F. Nakatsu,...
Transcript of References - research.vu.nl Reference.pdf · References 125 Blumstein, J., V. Faundez, F. Nakatsu,...
123
References
Abul-Husn, N., Bushlin, I., Moron, J., Jenkins, S., Dolios, G., Wang, R., Iyengar, R., Ma'ayan, A., and
Devi, L. (2009). Systems approach to explore components and interactions in the
presynapse. Proteomics 9, 3303-3315.
Ahmad, M., Polepalli, J., Goswami, D., Yang, X., Kaeser-Woo, Y., Südhof, T., and Malenka, R. (2012).
Postsynaptic complexin controls AMPA receptor exocytosis during LTP. Neuron 73,
260-267.
Aicardi, G. (2012). Age-related impairment of visual recognition memory correlates with impaired
synaptic distribution of GluA2 and protein kinase Mζ in the dentate gyrus. Rejuvenation
research 15, 530–533.
Aikawa, Y., Xia, X., and Martin, T. (2006b). SNAP25, but not syntaxin 1A, recycles via an
ARF6-regulated pathway in neuroendocrine cells. Molecular biology of the cell 17,
711–722.
Alberts, P., Rudge, R., Hinners, I., Muzerelle, A., Martinez-Arca, S., Irinopoulou, T., Marthiens, V.,
Tooze, S., Rathjen, F., Gaspar, P., et al. (2003). Cross talk between tetanus
neurotoxin-insensitive vesicle-associated membrane protein-mediated transport and
L1-mediated adhesion. Molecular biology of the cell 14, 4207–4220.
Alt, A., Nisenbaum, E., Bleakman, D., and Witkin, J. (2006). A role for AMPA receptors in mood
disorders. Biochemical pharmacology 71, 1273–1288.
Anderson, G. (2012). Twin studies in autism: what might they say about genetic and environmental
influences. Journal of autism and developmental disorders 42, 1526-1527.
Anderson, G., Galfin, T., Xu, W., Aoto, J., Malenka, R., and Südhof, T. (2012). Candidate autism gene
screen identifies critical role for cell-adhesion molecule CASPR2 in dendritic arborization
and spine development. Proceedings of the National Academy of Sciences of the United
States of America 109, 18120-18125.
Anggono, V., and Huganir, R. (2012). Regulation of AMPA receptor trafficking and synaptic plasticity.
Current opinion in neurobiology 22, 461-469.
Antonin, W., Holroyd, C., Fasshauer, D., Pabst, S., Von Mollard, G., and Jahn, R. (2000a). A SNARE
complex mediating fusion of late endosomes defines conserved properties of SNARE
structure and function. The EMBO journal 19, 6453–6464.
Antonin, W., Riedel, D., and von Mollard, G. (2000b). The SNARE Vti1a-beta is localized to small
synaptic vesicles and participates in a novel SNARE complex. The Journal of neuroscience :
the official journal of the Society for Neuroscience 20, 5724–5732.
References
124
Antonucci, F., Corradini, I., Morini, R., Fossati, G., Menna, E., Pozzi, D., Pacioni, S., Verderio, C., Bacci,
A., and Matteoli, M. (2013). Reduced SNAP-25 alters short-term plasticity at developing
glutamatergic synapses. EMBO reports 14.Bakkaloglu, B., O'Roak, B., Louvi, A., Gupta, A.,
Abelson, J., Morgan, T., Chawarska, K., Klin, A., Ercan-Sencicek, A., Stillman, A., et al.
(2008). Molecular cytogenetic analysis and resequencing of contactin associated
protein-like 2 in autism spectrum disorders. American journal of human genetics 82,
165-173.
Bal, M., Leitz, J., Reese, A., Ramirez, D., Durakoglugil, M., Herz, J., Monteggia, L., and Kavalali, E.
(2013). Reelin Mobilizes a VAMP7-Dependent Synaptic Vesicle Pool and Selectively
Augments Spontaneous Neurotransmission. Neuron 80, 934-946.
Barysch, S., Aggarwal, S., Jahn, R., and Rizzoli, S. (2009). Sorting in early endosomes reveals
connections to docking- and fusion-associated factors. Proceedings of the National
Academy of Sciences of the United States of America 106, 9697-9702.
Bastian M., Heymann S., Jacomy M. (2009). Gephi: an open source software for exploring and
manipulating networks. International AAAI Conference on Weblogs and Social Media.
Baumgartner, M., Weiss, A., Fritzius, T., Heinrich, J., and Moelling, K. (2009). The PDZ protein MPP2
interacts with c-Src in epithelial cells. Experimental cell research 315, 2888–2898.
Bayés, A., and Grant, S. (2009). Neuroproteomics: understanding the molecular organization and
complexity of the brain. Nature reviews Neuroscience 10, 635-646.
Becherer, U., and Rettig, J. (2006). Vesicle pools, docking, priming, and release. Cell and tissue
research 326, 393–407.
Beneyto, M., and Meador-Woodruff, J. (2004). Expression of transcripts encoding AMPAR subunits
and associated postsynaptic proteins in the macaque brain. The Journal of comparative
neurology 468, 530-554.
Benoist, M., Gaillard, S., and Castets, F. (2006). The striatin family: a new signaling platform in
dendritic spines. Journal of physiology, Paris 99, 146–153.
Benowitz, L., and Routtenberg, A. (1997). GAP-43: an intrinsic determinant of neuronal
development and plasticity. Trends in neurosciences 20, 84-91.
Betancur, C., Sakurai, T., and Buxbaum, J. (2009). The emerging role of synaptic cell-adhesion
pathways in the pathogenesis of autism spectrum disorders. Trends in neurosciences 32,
402-412.
Bildl, W., Haupt, A., Mueller, C. S., Biniossek, M. L. et al., Extending the dynamic range of label-free
mass spectrometric quantification of affinity purifications. Mol. Cell. Proteomics 2012, 11,
M111 007955.
Blatt, Gene J. (2010) Neuroscience of Autism. Encyclopedia of Life Sciences (eLS). John Wiley & Sons,
Ltd, Chichester.
References
125
Blumstein, J., V. Faundez, F. Nakatsu, T. Saito, H. Ohno, and R.B. Kelly. 2001. The neuronal form of
adaptor protein-3 is required for synaptic vesicle formation from endosomes. J. Neurosci.
21:8034–8042.
Boudreau, A., Reimers, J., Milovanovic, M., and Wolf, M. (2007). Cell surface AMPA receptors in the
rat nucleus accumbens increase during cocaine withdrawal but internalize after cocaine
challenge in association with altered activation of mitogen-activated protein kinases. The
Journal of neuroscience : the official journal of the Society for Neuroscience 27,
10621–10635.
Brandhorst, D., Zwilling, D., Rizzoli, S., Lippert, U., Lang, T., and Jahn, R. (2006). Homotypic fusion of
early endosomes: SNAREs do not determine fusion specificity. Proceedings of the National
Academy of Sciences of the United States of America 103, 2701–2706.
Burgalossi, A., Jung, S., Meyer, G., Jockusch, W., Jahn, O., Taschenberger, H., O’Connor, V., Nishiki,
T., Takahashi, M., Brose, N., et al. (2010). SNARE protein recycling by αSNAP and βSNAP
supports synaptic vesicle priming. Neuron 68, 473–487.
Burns, M., and Augustine, G. (1995). Synaptic structure and function: dynamic organization yields
architectural precision. Cell 83, 187–94.Burré, J., Sharma, M., Tsetsenis, T., Buchman, V.,
Etherton, M., and Südhof, T. (2010). Alpha-synuclein promotes SNARE-complex assembly
in vivo and in vitro. Science (New York, N.Y.)329, 1663–1667.
Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M., Maeda, N., Oyama, R., Ravasi, T.,
Lenhard, B., Wells, C., et al. (2005). The transcriptional landscape of the mammalian
genome. Science (New York, N.Y.) 309, 1559–1563.
Carroll, R., Beattie, E., Xia, H., Lüscher, C., Altschuler, Y., Nicoll, R., Malenka, R., and von Zastrow, M.
(1999). Dynamin-dependent endocytosis of ionotropic glutamate receptors. Proceedings
of the National Academy of Sciences of the United States of America 96, 14112-14117.
Carroll, R., Lissin, D., von Zastrow, M., Nicoll, R., and Malenka, R. (1999). Rapid redistribution of
glutamate receptors contributes to long-term depression in hippocampal cultures. Nature
neuroscience 2, 454-460.
Castillo, P. (2012). Presynaptic LTP and LTD of excitatory and inhibitory synapses. Cold Spring Harbor
perspectives in biology 4.
Catterall, W., and Few, A. (2008). Calcium channel regulation and presynaptic plasticity. Neuron 59,
882-901.
Chang, E., Savage, M., Flood, D., Thomas, J., Levy, R., Mahadomrongkul, V., Shirao, T., Aoki, C., and
Huerta, P. (2006). AMPA receptor downscaling at the onset of Alzheimer’s disease
pathology in double knockin mice. Proceedings of the National Academy of Sciences of the
United States of America 103, 3410–3415.
Chapman, E. (2008). How does synaptotagmin trigger neurotransmitter release? Annual review of
biochemistry 77, 615-641.
References
126
Chen, L., Chetkovich, D., Petralia, R., Sweeney, N., Kawasaki, Y., Wenthold, R., Bredt, D., and Nicoll,
R. (2000). Stargazin regulates synaptic targeting of AMPARs by two distinct mechanisms.
Nature 408, 936-943.
Chen, N., van der Schors, RC., Smit, AB. (2011). Chapter 12, A 1D-PAGE/LC-ESI Linear Ion Trap
Orbitrap MS Approach for the Analysis of Synapse Proteomes and Synaptic Protein
Complexes. Neuroproteomics. Humana Press. 159-168.
Chen, Y., and Scheller, R. (2001). SNARE-mediated membrane fusion. Nature reviews Molecular cell
biology 2, 98-106.
Cheng, D., Hoogenraad, C., Rush, J., Ramm, E., Schlager, M., Duong, D., Xu, P., Wijayawardana, S.,
Hanfelt, J., Nakagawa, T., et al. (2006). Relative and absolute quantification of postsynaptic
density proteome isolated from rat forebrain and cerebellum. Molecular & cellular
proteomics : MCP 5, 1158-1170.
Choi, H., Larsen, B., Lin, Z. Y., Breitkreutz, A. et al., SAINT: probabilistic scoring of affinity
purification-mass spectrometry data. Nat. Methods 2011, 8, 70–73.
Chowdhury, S., Shepherd, J., Okuno, H., Lyford, G., Petralia, R., Plath, N., Kuhl, D., Huganir, R., and
Worley, P. (2006). Arc/Arg3.1 interacts with the endocytic machinery to regulate AMPA
receptor trafficking. Neuron 52, 445-459.
Chua, J., Kindler, S., Boyken, J., and Jahn, R. (2010). The architecture of an excitatory synapse.
Journal of cell science 123, 819-823.
Citri, A., Bhattacharyya, S., Ma, C., Morishita, W., Fang, S., Rizo, J., and Malenka, R. (2010). Calcium
binding to PICK1 is essential for the intracellular retention of AMPA receptors underlying
long-term depression. The Journal of neuroscience : the official journal of the Society for
Neuroscience 30, 16437-16452.
Collingridge, G., Isaac, J., and Wang, Y. (2004). Receptor trafficking and synaptic plasticity. Nature
reviews Neuroscience 5, 952-962.
Coombs, I., and Cull-Candy, S. (2009). Transmembrane AMPAR regulatory proteins and AMPAR
function in the cerebellum. Neuroscience 162, 656-665.
Cox, J., Neuhauser, N., Michalski, A., Scheltema, R. A. et al., Andromeda: a peptide search engine
integrated into the MaxQuant environment. J. Proteome Res. 2011, 10, 1794– 1805.
Dahlhaus, M., Li, K., van der Schors, R., Saiepour, M., van Nierop, P., Heimel, J., Hermans, J., Loos,
M., Smit, A., and Levelt, C. (2011). The synaptic proteome during development and
plasticity of the mouse visual cortex. Molecular & cellular proteomics : MCP 10.
Deng, L., Kaeser, P., Xu, W., and Südhof, T. (2011). RIM proteins activate vesicle priming by reversing
autoinhibitory homodimerization of Munc13. Neuron 69, 317-331.
Dittman, J., and Ryan, T. (2009). Molecular circuitry of endocytosis at nerve terminals. Annual
review of cell and developmental biology 25, 133-160.
References
127
Duc, C., and Catsicas, S. (1995). Ultrastructural localization of SNAP-25 within the rat spinal cord and
peripheral nervous system. The Journal of comparative neurology 356, 152–63.Eastwood,
S., Kerwin, R., and Harrison, P. (1997). Immunoautoradiographic evidence for a loss of
alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate-preferring
non-N-methyl-D-aspartate glutamate receptors within the medial temporal lobe in
schizophrenia. Biological psychiatry 41, 636–643.
Elias, G., and Nicoll, R. (2007). Synaptic trafficking of glutamate receptors by MAGUK scaffolding
proteins. Trends in cell biology17, 343–352.
Emes, R., and Grant, S. (2012). Evolution of synapse complexity and diversity. Annual review of
neuroscience 35, 111-131.
Eubel, H., and Millar, A. (2009). Systematic monitoring of protein complex composition and
abundance by blue-native PAGE. Cold Spring Harbor protocols 2009.
Eubel, H., Braun, H., and Millar, A. (2005). Blue-native PAGE in plants: a tool in analysis of
protein-protein interactions. Plant methods 1, 11.
Faundez, V., J.T. Horng, and R.B. Kelly. 1998. A function for the AP3 coat complex in synaptic vesicle
formation from endosomes. Cell. 93:423–432.
Feng, W., and Zhang, M. (2009). Organization and dynamics of PDZ-domain-related supramodules in
the postsynaptic density. Nature reviews Neuroscience 10, 87-99.
Fernández, E., Collins, M., Uren, R., Kopanitsa, M., Komiyama, N., Croning, M., Zografos, L.,
Armstrong, J., Choudhary, J., and Grant, S. (2009). Targeted tandem affinity purification of
PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins.
Molecular systems biology 5, 269.
Fernández-Chacón, R., Königstorfer, A., Gerber, S., García, J., Matos, M., Stevens, C., Brose, N., Rizo,
J., Rosenmund, C., and Südhof, T. (2001). Synaptotagmin I functions as a calcium regulator
of release probability. Nature 410, 41–49.
Filiou, M., Bisle, B., Reckow, S., Teplytska, L., Maccarrone, G., and Turck, C. (2010). Profiling of
mouse synaptosome proteome and phosphoproteome by IEF. Electrophoresis 31,
1294–301.Fioravante, D., and Regehr, W. (2011). Short-term forms of presynaptic
plasticity. Current opinion in neurobiology 21, 269–274.
Ganley, I., Espinosa, E., and Pfeffer, S. (2008). A syntaxin 10-SNARE complex distinguishes two
distinct transport routes from endosomes to the trans-Golgi in human cells. The Journal of
cell biology 180, 159–172.
Garber, K., Visootsak, J., and Warren, S. (2008). Fragile X syndrome. European journal of human
genetics : EJHG 16, 666–672.
García-Junco-Clemente, P., Linares-Clemente, P., and Fernández-Chacón, R. (2005). Active zones for
presynaptic plasticity in the brain. Molecular psychiatry 10, 185–200; image 131.
References
128
Gengyo-Ando, K., Kuroyanagi, H., Kobayashi, T., Murate, M., Fujimoto, K., Okabe, S., and Mitani, S.
(2007). The SM protein VPS-45 is required for RAB-5-dependent endocytic transport in
Caenorhabditis elegans. EMBO reports 8, 152-157.
Gerhard, D., Wagner, L., Feingold, E., Shenmen, C., Grouse, L., Schuler, G., Klein, S., Old, S., Rasooly,
R., Good, P., et al. (2004). The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC). Genome research 14, 2121–2127.
Giraudo, C., Eng, W., Melia, T., and Rothman, J. (2006). A clamping mechanism involved in
SNARE-dependent exocytosis. Science (New York, NY) 313, 676-680.
Goudreault, M., D’Ambrosio, L., Kean, M., Mullin, M., Larsen, B., Sanchez, A., Chaudhry, S., Chen, G.,
Sicheri, F., Nesvizhskii, A., et al. (2009). A PP2A phosphatase high density interaction
network identifies a novel striatin-interacting phosphatase and kinase complex linked to
the cerebral cavernous malformation 3 (CCM3) protein. Molecular & cellular proteomics :
MCP 8, 157–171.
Greer, P., Hanayama, R., Bloodgood, B., Mardinly, A., Lipton, D., Flavell, S., Kim, T.-K., Griffith, E.,
Waldon, Z., Maehr, R., et al. (2010). The Angelman Syndrome protein Ube3A regulates
synapse development by ubiquitinating arc. Cell 140, 704–716.
Hanley, J., Khatri, L., Hanson, P., and Ziff, E. (2002). NSF ATPase and alpha-/beta-SNAPs disassemble
the AMPAR-PICK1 complex. Neuron 34, 53-67.
Harris, K., and Weinberg, R. (2012). Ultrastructure of synapses in the mammalian brain. Cold Spring
Harbor perspectives in biology 4.
Hatsuzawa, K., Lang, T., Fasshauer, D., Bruns, D., and Jahn, R. (2003). The R-SNARE motif of tomosyn
forms SNARE core complexes with syntaxin 1 and SNAP-25 and down-regulates exocytosis.
The Journal of biological chemistry 278, 31159–31166.
Hay, J., Fisette, P., Jenkins, G., Fukami, K., Takenawa, T., Anderson, R., and Martin, T. (1995).
ATP-dependent inositide phosphorylation required for Ca(2+)-activated secretion. Nature
374, 173–177.
Henne, W., Boucrot, E., Meinecke, M., Evergren, E., Vallis, Y., Mittal, R., and McMahon, H. (2010).
FCHo proteins are nucleators of clathrin-mediated endocytosis. Science (New York, N.Y.)
328, 1281–1284.
Herman, P., and Emr, S. (1990). Characterization of VPS34, a gene required for vacuolar protein
sorting and vacuole segregation in Saccharomyces cerevisiae. Molecular and cellular
biology 10, 6742-6754.
Holt, R., and Monaco, A. (2011). Links between genetics and pathophysiology in the autism
spectrum disorders. EMBO molecular medicine 3, 438-450.
Hong, W. (2005). SNAREs and traffic. Biochimica et biophysica acta 1744, 120–144.
Horresh, I., Poliak, S., Grant, S., Bredt, D., Rasband, M., and Peles, E. (2008). Multiple molecular
interactions determine the clustering of Caspr2 and Kv1 channels in myelinated axons. The
References
129
Journal of neuroscience : the official journal of the Society for Neuroscience 28,
14213-14222.
Inda, M., DeFelipe, J., and Muñoz, A. (2006). Voltage-gated ion channels in the axon initial segment
of human cortical pyramidal cells and their relationship with chandelier cells. Proceedings
of the National Academy of Sciences of the United States of America 103, 2920-2925.
Insall, R. H., Machesky, L. M., Actin dynamics at the leading edge: from simplemachinery to complex
networks. Dev. Cell 2009, 17, 310–322.
Jackson, A., and Nicoll, R. (2011). The expanding social network of ionotropic glutamate receptors:
TARPs and other transmembrane auxiliary subunits. Neuron 70, 178-199.
Jahn, R., and Scheller, R. (2006). SNAREs--engines for membrane fusion. Nature reviews Molecular
cell biology 7, 631-643.
Kaake, R., Wang, X., and Huang, L. (2010). Profiling of protein interaction networks of protein
complexes using affinity purification and quantitative mass spectrometry. Molecular &
cellular proteomics : MCP 9, 1650-1665.
Kaeser, P., and Südhof, T. (2005). RIM function in short- and long-term synaptic plasticity.
Biochemical Society transactions 33, 1345–1349.
Kalashnikova, E., Lorca, R., Kaur, I., Barisone, G., Li, B., Ishimaru, T., Trimmer, J., Mohapatra, D., and
Díaz, E. (2010). SynDIG1: an activity-regulated, AMPA- receptor-interacting
transmembrane protein that regulates excitatory synapse development. Neuron 65,
80-93.
Karnak, D., Lee, S., and Margolis, B. (2002). Identification of multiple binding partners for the
amino-terminal domain of synapse-associated protein 97. The Journal of biological
chemistry 277, 46730–46735.
Kawabe, H., Sakisaka, T., Yasumi, M., Shingai, T. et al., A novel rabconnectin-3-binding protein that
directly binds a GDP/GTP exchange protein for Rab3A small G protein implicated in
Ca(2+)-dependent exocytosis of neurotransmitter. Genes Cells 2003, 8, 537–546.
Kawasaki, F., and Ordway, R. (2009). Molecular mechanisms determining conserved properties of
short-term synaptic depression revealed in NSF and SNAP-25 conditional mutants.
Proceedings of the National Academy of Sciences of the United States of America 106,
14658-14663.
Kessels, H., and Malinow, R. (2009). Synaptic AMPA receptor plasticity and behavior. Neuron 61,
340-350.
Kim, J., Liu, C., Zhang, F., Duan, X., Wen, Z., Song, J., Feighery, E., Lu, B., Rujescu, D., St Clair, D., et al.
(2012). Interplay between DISC1 and GABA signaling regulates neurogenesis in mice and
risk for schizophrenia. Cell 148, 1051–1064.
Klemmer, P., Smit, A., and Li, K. (2009). Proteomics analysis of immuno-precipitated synaptic
protein complexes. Journal of proteomics 72, 82–90.
References
130
Körber, C., Horstmann, H., Sätzler, K., and Kuner, T. (2012). Endocytic structures and synaptic vesicle
recycling at a central synapse in awake rats. Traffic (Copenhagen, Denmark) 13,
1601-1611.
Krishnan, V., and Nestler, E. (2008). The molecular neurobiology of depression. Nature 455,
894–902.
Kunwar, A., Rickmann, M., Backofen, B., Browski, S., Rosenbusch, J., Schöning, S., Fleischmann, T.,
Krieglstein, K., and Fischer von Mollard, G. (2011). Lack of the endosomal SNAREs vti1a
and vti1b led to significant impairments in neuronal development. Proceedings of the
National Academy of Sciences of the United States of America 108, 2575-2580.
Lavallee-Adam, M., Cloutier, P., Coulombe, B., Blanchette, M., Modeling contaminants in AP-MS/MS
experiments. J. Proteome Res. 2011, 10, 886–895.
Lazzell, D., Belizaire, R., Thakur, P., Sherry, D., and Janz, R. (2004). SV2B regulates synaptotagmin 1
by direct interaction. J Biol Chem 279, 52124-52131.
Lebrand, C., Corti, M., Goodson, H., Cosson, P., Cavalli, V., Mayran, N., Fauré, J., and Gruenberg, J.
(2002). Late endosome motility depends on lipids via the small GTPase Rab7. The EMBO
journal 21, 1289–300.Li, F., Pincet, F., Perez, E., Eng, W., Melia, T., Rothman, J., and
Tareste, D. (2007). Energetics and dynamics of SNAREpin folding across lipid bilayers.
Nature structural & molecular biology 14, 890–896.
Li, F., Pincet, F., Perez, E., Giraudo, C., Tareste, D., and Rothman, J. (2011). Complexin activates and
clamps SNAREpins by a common mechanism involving an intermediate energetic state.
Nature structural & molecular biology 18, 941–946.
Li, K., and Jimenez, C. (2008). Synapse proteomics: current status and quantitative applications.
Expert review of proteomics 5, 353-360.
Li, K., and Smit, A. (2007). Proteomics of brain synapses and molecular dissection of synaptic
subdomains. Proteomics Clin Appl 1, 1476-1484.
Li, K., Chen, N., Klemmer, P., Koopmans, F., Karupothula, R., and Smit, A. (2012). Identifying true
protein complex constituents in interaction proteomics: the example of the DMXL2
protein complex. Proteomics 12, 2428-2432.
Li, K., Hornshaw, M., Van Der Schors, R., Watson, R., Tate, S., Casetta, B., Jimenez, C., Gouwenberg,
Y., Gundelfinger, E., Smalla, K.-H., et al. (2004). Proteomics analysis of rat brain
postsynaptic density. Implications of the diverse protein functional groups for the
integration of synaptic physiology. The Journal of biological chemistry 279, 987-1002.
Li, K., Klemmer, P., Smit, A. (2010). Interaction proteomics of synapse protein complexes. Anal.
Bioanal. Chemi. 397, 3195–3202.
Liu, X., Wen, F., Yang, J., Chen, L., and Wei, Y. (2010). A review of current applications of mass
spectrometry for neuroproteomics in epilepsy. Mass spectrometry reviews 29, 197-246.
Lonart, G., Janz, R., Johnson, K., and Südhof, T. (1998). Mechanism of action of rab3A in mossy fiber
LTP. Neuron 21, 1141-1150.
References
131
Lonart, G., Schoch, S., Kaeser, P., Larkin, C., Südhof, T., and Linden, D. (2003). Phosphorylation of
RIM1alpha by PKA triggers presynaptic long-term potentiation at cerebellar parallel fiber
synapses. Cell 115, 49-60.
Lu, W., and Roche, K. (2012). Posttranslational regulation of AMPAR trafficking and function.
Current opinion in neurobiology 22, 470-479.
Lu, W., Shi, Y., Jackson, A., Bjorgan, K., During, M., Sprengel, R., Seeburg, P., and Nicoll, R. (2009).
Subunit composition of synaptic AMPARs revealed by a single-cell genetic approach.
Neuron 62, 254-268.
Lull, M., Freeman, W., VanGuilder, H., and Vrana, K. (2010). The use of neuroproteomics in drug
abuse research. Drug and alcohol dependence 107, 11-22.
Luscher, C., and Malenka, R. C. (2012). NMDA Receptor-Dependent Long-Term Potentiation and
Long-Term Depression (LTP/LTD). Cold Spring Harbor Perspectives in Biology 4.
Lüthi, A., Chittajallu, R., Duprat, F., Palmer, M., Benke, T., Kidd, F., Henley, J., Isaac, J., and
Collingridge, G. (1999). Hippocampal LTD expression involves a pool of AMPARs regulated
by the NSF-GluR2 interaction. Neuron 24, 389-399.
Mah, W., Ko, J., Nam, J., Han, K., Chung, W., and Kim, E. (2010). Selected SALM (synaptic
adhesion-like molecule) family proteins regulate synapse formation. The Journal of
neuroscience : the official journal of the Society for Neuroscience 30, 5559–5568.
Mallard, F., Tang, B., Galli, T., Tenza, D., Saint-Pol, A., Yue, X., Antony, C., Hong, W., Goud, B., and
Johannes, L. (2002). Early/recycling endosomes-to-TGN transport involves two SNARE
complexes and a Rab6 isoform. The Journal of cell biology 156, 653–664.
Malovannaya, A., Li, Y., Bulynko, Y., Jung, S. Y. et al., Streamlined analysis schema for
high-throughput identification of endogenous protein complexes. Proc. Natl. Acad. Sci.
U.S.A. 2010, 107, 2431–2436.
Malsam, J., Kreye, S., and Söllner, T. (2008). Membrane fusion: SNAREs and regulation. Cellular and
molecular life sciences : CMLS 65, 2814–2832.
Martens, S., Kozlov, M., and McMahon, H. (2007). How synaptotagmin promotes membrane fusion.
Science (New York, N.Y.) 316, 1205–1208.
Mao, L., Takamiya, K., Thomas, G., Lin, D.-T., and Huganir, R. (2010). GRIP1 and 2 regulate
activity-dependent AMPA receptor recycling via exocyst complex interactions. Proceedings
of the National Academy of Sciences of the United States of America 107, 19038-19043.
Martin, L., Blackstone, C., Levey, A., Huganir, R., and Price, D. (1993). AMPA glutamate receptor
subunits are differentially distributed in rat brain. Neuroscience 53, 327-358.
Masuda, E., Huang, B., Fisher, J., Luo, Y., and Scheller, R. (1998). Tomosyn binds t-SNARE proteins
via a VAMP-like coiled coil. Neuron 21, 479–480.
Maximov, A., Tang, J., Yang, X., Pang, Z., and Südhof, T. (2009). Complexin controls the force
transfer from SNARE complexes to membranes in fusion. Science (New York, N.Y.) 323,
References
132
516–21.McMahon, H., and Boucrot, E. (2011). Molecular mechanism and physiological
functions of clathrin-mediated endocytosis. Nature reviews. Molecular cell biology 12,
517–533
McMahon, H., Missler, M., Li, C., and Südhof, T. (1995). Complexins: cytosolic proteins that regulate
SNAP receptor function. Cell 83, 111–119.
Missler, M., Südhof, T., and Biederer, T. (2012). Synaptic cell adhesion. Cold Spring Harbor
perspectives in biology 4, a005694.
Mochida, S. (2011). Activity-dependent regulation of synaptic vesicle exocytosis and presynaptic
short-term plasticity. Neuroscience research 70, 16-23.
Mohrmann, R., de Wit, H., Verhage, M., Neher, E., and Sørensen, J. (2010). Fast vesicle fusion in
living cells requires at least three SNARE complexes. Science (New York, N.Y.) 330,
502–505.
Montgomery, J., Zamorano, P., and Garner, C. (2004). MAGUKs in synapse assembly and function:
an emerging view. Cellular and molecular life sciences : CMLS 61, 911–929.
Moore, D., West, A., Dawson, V., and Dawson, T. (2005). Molecular pathophysiology of Parkinson’s
disease. Annual review of neuroscience 28, 57–87.
Morciano, M., Beckhaus, T., Karas, M., Zimmermann, H., and Volknandt, W. (2009). The proteome
of the presynaptic active zone: from docked synaptic vesicles to adhesion molecules and
maxi-channels. Journal of neurochemistry 108, 662–675.
Morgans, C., and Brandstätter, J. (2000). SNAP-25 is present on the Golgi apparatus of retinal
neurons. Neuroreport 11, 85–88.
Mukherjee, K., Yang, X., Gerber, S., Kwon, H.., Ho, A., Castillo, P., Liu, X., and Südhof, T. (2010).
Piccolo and bassoon maintain synaptic vesicle clustering without directly participating in
vesicle exocytosis. Proceedings of the National Academy of Sciences of the United States
of America 107, 6504-6509.
Muller, C. S., Haupt, A., Bildl, W., Schindler, J. et al., Quantitative proteomics of the Cav2 channel
nano-environments in the mammalian brain. Proc. Natl. Acad. Sci. U.S.A. 2010, 107,
14950–14957.
Nagano, F., Kawabe, H., Nakanishi, H., Shinohara, M. et al., Rabconnectin-3, a novel protein that
binds both GDP/GTP exchange protein and GTPase-activating protein for Rab3 small G
protein family. J. Biol. Chem. 2002, 277, 9629–9632.
Neves, G., Cooke, S., and Bliss, T. (2008). Synaptic plasticity, memory and the hippocampus: a neural
network approach to causality. Nature reviews Neuroscience 9, 65-75.
Newman, M. (2006). Modularity and community structure in networks. Proceedings of the National
Academy of Sciences of the United States of America 103, 8577–8582.
Nielsen, E., Christoforidis, S., Uttenweiler-Joseph, S., Miaczynska, M., Dewitte, F., Wilm, M., Hoflack,
B., and Zerial, M. (2000). Rabenosyn-5, a novel Rab5 effector, is complexed with hVPS45
References
133
and recruited to endosomes through a FYVE finger domain. The Journal of cell biology 151,
601–612.
Offenhäuser, C., Lei, N., Roy, S., Collins, B., Stow, J., and Murray, R. (2011). Syntaxin 11 binds Vti1b
and regulates late endosome to lysosome fusion in macrophages. Traffic (Copenhagen,
Denmark) 12, 762–773.
Ogawa, Y., Oses-Prieto, J., Kim, M., Horresh, I., Peles, E., Burlingame, A., Trimmer, J., Meijer, D., and
Rasband, M. (2010). ADAM22, a Kv1 channel-interacting protein, recruits
membrane-associated guanylate kinases to juxtaparanodes of myelinated axons. The
Journal of neuroscience : the official journal of the Society for Neuroscience 30,
1038-1048.
Olsen, O., Moore, K., Nicoll, R., and Bredt, D. (2006). Synaptic transmission regulated by a
presynaptic MALS/Liprin-alpha protein complex. Current opinion in cell biology 18,
223-227.
O'Roak, B., and State, M. (2008). Autism genetics: strategies, challenges, and opportunities. Autism
research : official journal of the International Society for Autism Research 1, 4-17.
Pang, Z., and Südhof, T. (2010). Cell biology of Ca2+-triggered exocytosis. Current opinion in cell
biology 22, 496-505.
Peñagarikano, O., Abrahams, B., Herman, E., Winden, K., Gdalyahu, A., Dong, H., Sonnenblick, L.,
Gruver, R., Almajano, J., Bragin, A., et al. (2011). Absence of CNTNAP2 leads to epilepsy,
neuronal migration abnormalities, and core autism-related deficits. Cell 147, 235-246.
Peñagarikano, O., and Geschwind, D. (2012). What does CNTNAP2 reveal about autism spectrum
disorder? Trends in molecular medicine 18, 156-163.
Peng, J., Kim, M., Cheng, D., Duong, D., Gygi, S., and Sheng, M. (2004). Semiquantitative proteomic
analysis of rat forebrain postsynaptic density fractions by mass spectrometry. The Journal
of biological chemistry 279, 21003-21011.
Pernía-Andrade, A., and Jonas, P. (2011). The multiple faces of RIM. Neuron 69, 185-187.
Petralia, R., and Wenthold, R. (1992). Light and electron immunocytochemical localization of
AMPA-selective glutamate receptors in the rat brain. The Journal of comparative
neurology 318, 329-354.
Pflieger, D., Gonnet, F., de la Fuente van Bentem, S., Hirt, H. et al., Linking the proteins–elucidation
of proteome-scale networks using mass spectrometry. Mass Spectrom. Rev. 2011, 30,
268–297.
Pobbati, A., Razeto, A., Böddener, M., Becker, S., and Fasshauer, D. (2004). Structural basis for the
inhibitory role of tomosyn in exocytosis. The Journal of biological chemistry 279,
47192–47200.
Poliak, S., Salomon, D., Elhanany, H., Sabanay, H., Kiernan, B., Pevny, L., Stewart, C., Xu, X., Chiu,
S.-Y., Shrager, P., et al. (2003). Juxtaparanodal clustering of Shaker-like K+ channels in
References
134
myelinated axons depends on Caspr2 and TAG-1. The Journal of cell biology 162,
1149-1160.
Pooley, R., Moynihan, K., Soukoulis, V., Reddy, S., Francis, R., Lo, C., Ma, L.-J., and Bader, D. (2008).
Murine CENPF interacts with syntaxin 4 in the regulation of vesicular transport. Journal of
cell science 121, 3413–3421.
Pryor, P., Mullock, B., Bright, N., Lindsay, M., Gray, S., Richardson, S., Stewart, A., James, D., Piper, R.,
and Luzio, J. (2004). Combinatorial SNARE complexes with VAMP7 or VAMP8 define
different late endocytic fusion events. EMBO reports 5, 590–595.
Raingo, J., Khvotchev, M., Liu, P., Darios, F., Li, Y., Ramirez, D., Adachi, M., Lemieux, P., Toth, K.,
Davletov, B., et al. (2012). VAMP4 directs synaptic vesicles to a pool that selectively
maintains asynchronous neurotransmission. Nature neuroscience 15, 738–745.
Regehr, W. Short-term presynaptic plasticity. (2012). Cold Spring Harbor perspectives in biology 4.
Reisinger, V., and Eichacker, L. (2007). How to analyze protein complexes by 2D blue native
SDS-PAGE. Proteomics 7 Suppl 1, 6-16.
Rekart, J., Meiri, K., and Routtenberg, A. (2005). Hippocampal-dependent memory is impaired in
heterozygous GAP-43 knockout mice. Hippocampus 15, 1-7.
Renner, M., Specht, C., and Triller, A. (2008). Molecular dynamics of postsynaptic receptors and
scaffold proteins. Current opinion in neurobiology 18, 532-540.
Rizo, J., and Rosenmund, C. (2008). Synaptic vesicle fusion. Nature structural & molecular biology 15,
665-674.
Rizo, J., and Südhof, T. (2012). The membrane fusion enigma: SNAREs, Sec1/Munc18 proteins, and
their accomplices--guilty as charged? Annual review of cell and developmental biology 28,
279–308.
Roche, Katherine W, and Isaac, John TR (2007). AMPA Receptors. Encyclopedia of Life Sciences (eLS).
John Wiley & Sons Ltd, Chichester.
Ronald, A., Simonoff, E., Kuntsi, J., Asherson, P., and Plomin, R. (2008). Evidence for overlapping
genetic influences on autistic and ADHD behaviours in a community twin sample. Journal
of child psychology and psychiatry, and allied disciplines 49, 535-542.
Rouach, N., Byrd, K., Petralia, R., Elias, G., Adesnik, H., Tomita, S., Karimzadegan, S., Kealey, C., Bredt,
D., and Nicoll, R. (2005). TARP gamma-8 controls hippocampal AMPAR number,
distribution and synaptic plasticity. Nature neuroscience 8, 1525-1533.
Saheki, Y., and De Camilli, P. (2012). Synaptic vesicle endocytosis. Cold Spring Harbor perspectives in
biology 4.
Scales, S., Hesser, B., Masuda, E., and Scheller, R. (2002). Amisyn, a novel syntaxin-binding protein
that may regulate SNARE complex assembly. The Journal of biological chemistry 277,
28271–28279.
References
135
Schägger, H., and von Jagow, G. (1991). Blue native electrophoresis for isolation of membrane
protein complexes in enzymatically active form. Analytical biochemistry 199, 223-231.
Schägger, H., Cramer, W., and von Jagow, G. (1994). Analysis of molecular masses and oligomeric
states of protein complexes by blue native electrophoresis and isolation of membrane
protein complexes by two-dimensional native electrophoresis. Analytical biochemistry 217,
220-230.
Schaub, J., Lu, X., Doneske, B., Shin, Y.-K., and McNew, J. (2006). Hemifusion arrest by complexin is
relieved by Ca2+-synaptotagmin I. Nature structural & molecular biology 13, 748-750.
Schiavo, G., Stenbeck, G., Rothman, J., and Söllner, T. (1997). Binding of the synaptic vesicle
v-SNARE, synaptotagmin, to the plasma membrane t-SNARE, SNAP-25, can explain docked
vesicles at neurotoxin-treated synapses. Proceedings of the National Academy of Sciences
of the United States of America 94, 997–1001.
Schoch, S., and Gundelfinger, E. (2006). Molecular organization of the presynaptic active zone. Cell
and tissue research 326, 379-391.
Schweizer, Felix E (2001). Synapses. In: eLS. John Wiley & Sons Ltd, Chichester.
Schweizer, F.E. (2006) Neurotransmitter Release from Presynaptic Terminals. Encyclopedia of life
sciences (eLS). John Wiley & Sons Ltd, Chichester.
Schwenk, J., Harmel, N., Brechet, A., Zolles, G., Berkefeld, H., Müller, C., Bildl, W., Baehrens, D.,
Hüber, B., Kulik, A., et al. (2012). High-resolution proteomics unravel architecture and
molecular diversity of native AMPA receptor complexes. Neuron 74, 621-633.
Schwenk, J., Harmel, N., Zolles, G., Bildl, W., Kulik, A., Heimrich, B., Chisaka, O., Jonas, P., Schulte, U.,
Fakler, B., et al. (2009). Functional proteomics identify cornichon proteins as auxiliary
subunits of AMPA receptors. Science (New York, N.Y.) 323, 1313–1319.
Sethi, N., Yan, Y., Quek, D., Schupbach, T. et al., Rabconnectin-3 is a functional regulator of
mammalian Notch signaling. J. Biol. Chem. 2010, 285, 34757–34764.
Shanks, N., Savas, J., Maruo, T., Cais, O., Hirao, A., Oe, S., Ghosh, A., Noda, Y., Greger, I., Yates, J., et
al. (2012). Differences in AMPA and kainate receptor interactomes facilitate identification
of AMPA receptor auxiliary subunit GSG1L. Cell reports 1, 590–598.
Sharma, M., Burré, J., and Südhof, T. (2011). CSPα promotes SNARE-complex assembly by
chaperoning SNAP-25 during synaptic activity. Nature cell biology 13, 30–39.
Sheng, M., and Hoogenraad, C. (2007). The postsynaptic architecture of excitatory synapses: a more
quantitative view. Annual review of biochemistry 76, 823-847.
Sheth, P., Samak, G., Shull, J., Seth, A., and Rao, R. (2009). Protein phosphatase 2A plays a role in
hydrogen peroxide-induced disruption of tight junctions in Caco-2 cell monolayers. The
Biochemical journal 421, 59–70.
Siksou, L., Triller, A., and Marty, S. (2011). Ultrastructural organization of presynaptic terminals.
Current opinion in neurobiology 21, 261-268.
References
136
Simonsen, A., Lippé, R., Christoforidis, S., Gaullier, J., Brech, A., Callaghan, J., Toh, B., Murphy, C.,
Zerial, M., and Stenmark, H. (1998). EEA1 links PI(3)K function to Rab5 regulation of
endosome fusion. Nature 394, 494–498.
Sinha, R., Ahmed, S., Jahn, R., and Klingauf, J. (2011). Two synaptobrevin molecules are sufficient for
vesicle fusion in central nervous system synapses. Proceedings of the National Academy of
Sciences of the United States of America 108, 14318–14323.
Sjöström, P., Rancz, E., Roth, A., and Häusser, M. (2008). Dendritic excitability and synaptic plasticity.
Physiological reviews 88, 769-840.
Smith, S., Renden, R., and von Gersdorff, H. (2008). Synaptic vesicle endocytosis: fast and slow
modes of membrane retrieval. Trends in neurosciences 31, 559-568.
Spijker, S. Chapter 2, Dissection of Rodent Brain Regions. Neuroproteomics. Humana Press. 2011,
159-168.
Spruston, N. (2008). Pyramidal neurons: dendritic structure and synaptic integration. Nature
reviews Neuroscience 9, 206-221.
State, M., and Levitt, P. (2011). The conundrums of understanding genetic risks for autism spectrum
disorders. Nature neuroscience 14, 1499-1506.
Stenmark, H. (2009). Rab GTPases as coordinators of vesicle traffic. Nature reviews Molecular cell
biology 10, 513-525.
Stevens, S., and Kobeissy, F. (2011). Neuroproteomics: deciphering brain dynamics. Electrophoresis
33, 3581.
Straub, C., and Tomita, S. (2012). The regulation of glutamate receptor trafficking and function by
TARPs and other transmembrane auxiliary subunits. Current opinion in neurobiology 22,
488-495.
Südhof, T. (2004). The synaptic vesicle cycle. Annual review of neuroscience 27, 509-547.
Südhof, T. (2006). Synaptic vesicles: an organelle comes of age. Cell 127, 671-673.
Südhof, T. (2012). The presynaptic active zone. Neuron 75, 11-25.
Südhof, T. (2013). A molecular machine for neurotransmitter release: synaptotagmin and beyond.
Nature medicine 19, 1227–1231.
Südhof, T., and Rizo, J. (2011). Synaptic vesicle exocytosis. Cold Spring Harbor perspectives in
biology 3.
Südhof, T., and Rothman, J. (2009). Membrane fusion: grappling with SNARE and SM proteins.
Science (New York, NY) 323, 474-477.
Suter, B., Kittanakom, S., and Stagljar, I. (2008). Two-hybrid technologies in proteomics research.
Current opinion in biotechnology 19, 316-323.
Sutton, M., and Schuman, E. (2006). Dendritic protein synthesis, synaptic plasticity, and memory.
Cell 127, 49-58.
References
137
Swamy, M., Siegers, G., Minguet, S., Wollscheid, B., and Schamel, W. (2006). Blue native
polyacrylamide gel electrophoresis (BN-PAGE) for the identification and analysis of
multiprotein complexes. Science's STKE : signal transduction knowledge environment 2006,
pl4.
Takamori, S., Holt, M., Stenius, K., Lemke, E., Grønborg, M., Riedel, D., Urlaub, H., Schenck, S.,
Brügger, B., Ringler, P., Müller, S., Rammner, B., Gräter, F., Hub, J., De Groot, B., Mieskes,
G., Moriyama, Y., Klingauf, J., Grubmüller, H., Heuser, J., Wieland, F., and Jahn, R. (2006).
Molecular anatomy of a trafficking organelle. Cell 127, 831-846.
Tang, J., Maximov, A., Shin, O., Dai, H., Rizo, J., and Südhof, T. (2006). A complexin/synaptotagmin 1
switch controls fast synaptic vesicle exocytosis. Cell 126, 1175-1187.
Tao-Cheng, J., Du, J., and McBain, C. (2000). Snap-25 is polarized to axons and abundant along the
axolemma: an immunogold study of intact neurons. Journal of neurocytology 29, 67–77.
Tolar, L., and Pallanck, L. (1998). NSF function in neurotransmitter release involves rearrangement
of the SNARE complex downstream of synaptic vesicle docking. The Journal of
neuroscience : the official journal of the Society for Neuroscience 18, 10250–10256.
Tomita, S., Chen, L., Kawasaki, Y., Petralia, R., Wenthold, R., Nicoll, R., and Bredt, D. (2003).
Functional studies and distribution define a family of transmembrane AMPAR regulatory
proteins. The Journal of cell biology 161, 805-816.
Traka, M., Goutebroze, L., Denisenko, N., Bessa, M., Nifli, A., Havaki, S., Iwakura, Y., Fukamauchi, F.,
Watanabe, K., Soliven, B., et al. (2003). Association of TAG-1 with Caspr2 is essential for
the molecular organization of juxtaparanodal regions of myelinated fibers. The Journal of
cell biology 162, 1161-1172.
Traynelis, S., Wollmuth, L., McBain, C., Menniti, F., Vance, K., Ogden, K., Hansen, K., Yuan, H., Myers,
S., and Dingledine, R. (2010). Glutamate receptor ion channels: structure, regulation, and
function. Pharmacological reviews 62, 405-496.
Trinidad, J., Thalhammer, A., Specht, C., Lynn, A., Baker, P., Schoepfer, R., and Burlingame, A. (2008).
Quantitative analysis of synaptic phosphorylation and protein expression. Molecular &
cellular proteomics : MCP 7, 684–696.
Trinkle-Mulcahy, L. (2012). Resolving protein interactions and complexes by affinity purification
followed by label-based quantitative mass spectrometry. Proteomics 12, 1623-1638.
Van den Oever, M., Goriounova, N., Li, K., Van der Schors, R., Binnekade, R., Schoffelmeer, A.,
Mansvelder, H., Smit, A., Spijker, S., and De Vries, T. (2008). Prefrontal cortex AMPA
receptor plasticity is crucial for cue-induced relapse to heroin-seeking. Nature
neuroscience 11, 1053–1058.
Vandenberghe, W., Nicoll, R., and Bredt, D. (2005). Stargazin is an AMPA receptor auxiliary subunit.
Proceedings of the National Academy of Sciences of the United States of America 102,
485–490.
References
138
Verhage, M., Maia, A., Plomp, J., Brussaard, A., Heeroma, J., Vermeer, H., Toonen, R., Hammer, R.,
van den Berg, T., Missler, M., et al. (2000). Synaptic assembly of the brain in the absence
of neurotransmitter secretion. Science (New York, N.Y.) 287, 864–9.
Verhage, M., and Sørensen, J. (2008). Vesicle docking in regulated exocytosis. Traffic (Copenhagen,
Denmark) 9, 1414-1424.
Volkel, P., Le Faou, P., Angrand, P. O., Interaction proteomics: characterization of protein complexes
using tandem affinity purification-mass spectrometry. Biochem. Soc. Trans. 2010, 38,
883–887.
von Engelhardt, J., Mack, V., Sprengel, R., Kavenstock, N., Li, K., Stern-Bach, Y., Smit, A., Seeburg, P.,
and Monyer, H. (2010). CKAMP44: a brain-specific protein attenuating short-term synaptic
plasticity in the dentate gyrus. Science (New York, NY) 327, 1518-1522.
Wang, C., Chang, K., Petralia, R., Wang, Y., Seabold, G., and Wenthold, R. (2006). A novel family of
adhesion-like molecules that interacts with the NMDA receptor. The Journal of
neuroscience : the official journal of the Society for Neuroscience 26, 2174–2183.
Wang, P., Seabold, G., and Wenthold, R. (2008). Synaptic adhesion-like molecules (SALMs) promote
neurite outgrowth. Molecular and cellular neurosciences 39, 83–94.
Wang, T., Ming, Z., Xiaochun, W., and Hong, W. (2011). Rab7: role of its protein interaction cascades
in endo-lysosomal traffic. Cellular signalling 23, 516–21.Wang, Y., and Tang, B. (2006).
SNAREs in neurons--beyond synaptic vesicle exocytosis (Review). Molecular membrane
biology 23, 377–384.
Washbourne, P., Thompson, P., Carta, M., Costa, E., Mathews, J., Lopez-Benditó, G., Molnár, Z.,
Becher, M., Valenzuela, C., Partridge, L., et al. (2002). Genetic ablation of the t-SNARE
SNAP-25 distinguishes mechanisms of neuroexocytosis. Nature neuroscience 5, 19–26.
Watanabe, Y., Katayama, N., Takeuchi, K., Togano, T., Itoh, R., Sato, M., Yamazaki, M., Abe, M., Sato,
T., Oda, K., et al. (2013). Point Mutation in Syntaxin-1A Causes Abnormal Vesicle Recycling,
Behaviors, and Short Term Plasticity. The Journal of biological chemistry 288,
34906–34919.
Wendler, F., Page, L., Urbé, S., and Tooze, S. (2001). Homotypic fusion of immature secretory
granules during maturation requires syntaxin 6. Molecular biology of the cell 12,
1699–1709.
Winter, U., Chen, X., and Fasshauer, D. (2009). A conserved membrane attachment site in
alpha-SNAP facilitates N-ethylmaleimide-sensitive factor (NSF)-driven SNARE complex
disassembly. The Journal of biological chemistry 284, 31817-31826.
Wittig, I., and Schägger, H. (2008). Features and applications of blue-native and clear-native
electrophoresis. Proteomics 8, 3974-3990.
Wittig, I., Braun, H., and Schägger, H. (2006). Blue native PAGE. Nature protocols 1, 418-428.
Wodak, S. J., Pu, S., Vlasblom, J., Seraphin, B., Challenges and rewards of interaction proteomics.
Mol. Cell. Proteomics 2009, 8, 3–18.
References
139
Wolfe, M., and Selkoe, D. (2010). Giving Alzheimer’s the old one-two. Cell 142, 194–196.
Xu, J., Luo, F., Zhang, Z., Xue, L., Wu, X.-S., Chiang, H.-C., Shin, W., and Wu, L.-G. (2013). SNARE
proteins synaptobrevin, SNAP-25, and syntaxin are involved in rapid and slow endocytosis
at synapses. Cell reports 3, 1414–1421.
Yamagata, M., Sanes, J., and Weiner, J. (2003). Synaptic adhesion molecules. Current opinion in cell
biology 15, 621–632.
Yan, Y., Denef, N., Schupbach, T., The vacuolar proton pump, V-ATPase, is required for notch
signaling and endosomal trafficking in Drosophila. Dev. Cell 2009, 17, 387–402.
Young, S. (2005). Proteolysis of SNARE proteins alters facilitation and depression in a specific way.
Proceedings of the National Academy of Sciences of the United States of America 102,
2614-2619.
Zhang, T., and Hong, W. (2001). Ykt6 forms a SNARE complex with syntaxin 5, GS28, and Bet1 and
participates in a late stage in endoplasmic reticulum-Golgi transport. The Journal of
biological chemistry 276, 27480–27487.
Zhang, X., Jia, N., Zhao, X., Tang, G., Guan, L., Wang, D., Sun, H., Li, H., and Zhu, Z. (2013).
Involvement of pGluR1, EAAT2 and EAAT3 in offspring depression induced by prenatal
stress. Neuroscience 250, 333–341.
Zhang, Z., Wang, D., Sun, T., Xu, J., Chiang, H.-C., Shin, W., and Wu, L.-G. (2013). The SNARE proteins
SNAP25 and synaptobrevin are involved in endocytosis at hippocampal synapses. The
Journal of neuroscience : the official journal of the Society for Neuroscience 33,
9169–9175.
140