REFERENCES Dept. of Biotechnology, JJTU, Jhunjhunu ...
Transcript of REFERENCES Dept. of Biotechnology, JJTU, Jhunjhunu ...
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 119
REFERENCES
[1] Agrawal, M., S. Pradeep, K. Chandraraj, S. N. Gummadi., 2005, Hydrolysis of starch
by amylase from Bacillus sp. KCA102: a statistical approach Process Biochemistry
40, 2499–2507.
[2] Ahmed, A., A, H.M. Ibrahim., 2011, A potential new isolate for the production of a
thermostable extracellular α- amylase. Journal of Bacteriology Research, 3(8), 129-
137.
[3] Ahmadi, A., S. Ghobadi., K. Khajeh., B. Nomanpour., A. B. Dalfard., 2010,
Purification of α-Amylase from Bacillus sp. GHA1 and Its Partial Characterization J.
Iran. Chem. Soc, 7(2), 432-440.
[4] Aiyer P.V.D., 2004, Effect of C: N ratio on alpha amylase production by Bacillus
licheniformis SPT 278, Afr. J. Biotechnol. 3(10), 519–522.
[5] Akhnazarova, S., V. Kefarov., 1982, Experiment optimization in chemistry and
chemical engineering. Moscow, Mir Publishers.
[6] Aktas,N., I. H. Boyac., M. Mutlu., A. Tanyola., 2006, Optimization of lactose
utilization in deproteinated whey by Kluyveromyces marxianuss using response
surface methodology (RSM) Bioresource Technology, 97, 2252–2259.
[7] Alikhajeh, J., K. Khajeh., M. Naderi-Manesh., B. Ranjbar., R. H. Sajedi., H. Naderi-
Manesh., 2007, Kinetic analysis, structural studies and prediction of pKa values of
Bacillus KR-8104 α-amylase: The determinants of pH activity profile Enzyme and
Microbial Technology 41, 337–345.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 120
[8] Al-ZaZaee, M. M. A., S. Neelgund., D. M. Gurumurthy., A. N. Rajeshwara., 2011,
Identification, Characterization of Novel Halophilic Bacillus cereus Ms6: Source for
extracellular α- amylase. Advance in Environmental Biology, 5(5), 992-999.
[9] Amico, S. S., C. Gerday., G. Feller., 2000, Structural similarities and evolutionary
relationships in chloride-dependent α-amylases. Gene, 253, 95–105.
[10] Anto, H., U. Trivedi., K. Patel., 2006, Alpha amylase Production by Bacillus cereus
MTCC 1305 Using Solid-State Fermentation Food Technol. Biotechnol .44 (2), 241–
245.
[11] Apar, D.K., B. Özbek., 2004, α-Amylase inactivation by temperature during starch
hydrolysis, Process Biochemistry 39, 1137–1144.
[12] Araújo, R., M. Casal., A. Cavaco-Paulo., 2008, Biocatal. Biotransform, 26, 332–
349.
[13] Asghari, S. M., K. Khajeh., F. Moradian, B. Ranjbar, H. Naderi-Manesh., 2004,
Acid-induced conformational changes in Bacillus amyloliquefaciens α-amylase:
appearance of a molten globule like state Enzyme and Microbial Technology 35, 51–
57.
[14] Asgher, M., M. J. Asad., S.U. Rahman., R.L. Legge., 2007, A thermostable a-amylase
from a moderately thermophilic Bacillus subtilis strain for starch processing Journal
of Food Engineering 79,950–955.
[15] Atienzar, F. A., M. Conradi., A. Evenden., A. Jha., M. Depledge., 1999, Qualitative
assessment of genotoxicity using RAPD: comparison of genomic template stability
with key fitness parameters in Daphnia magna exposed to benzo (a) pyrene. Environ.
Toxicol. Chem., 18, 2275–2282.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 121
[16] Atienzar, F. A., B. Cordi., M. E. Donkin., A. J. Evenden., A. N. Jha., M.H. Depledge.,
2000, Comparison of ultraviolet-induced genotoxicity detected by random amplified
polymorphic DNA with chlorophyll fluorescence and growth in a marine macroalgae,
Palmaria palmate. Aquatic Toxicol. 50, 1-12.
[17] Avci, A., S. Dönmez., 2012, Purification and characterization of a thermostable
cyclodextrin glycosyltransferase from Thermoanaerobacter sp. P4. African Journal of
Biotechnology, 11(45), 10407-10415.
[18] Baks, T., A. E.M. Janssen, R. M. Boom., 2006, The effect of carbohydrates on α-
amylase activity measurements Enzyme and Microbial Technology, 39.
[19] Barritt, M. M., 1936, The intensification of the Voges-Proskauer reaction by the
addition of α-naphthol. J. Pathol. Bacteriol. 42, 441–454.
[20] Bartelt, M., 2000, Diagnostic bacteriology, a study guide. F. A. Davis Co.,
Philadelphia, PA.
[21] Bauer, A. W., W. M. M. Kirby., J. C. Sherris., M. Turck., 1966, Antibiotic
susceptibility testing by a standardized single disk method. Am. J. Clin. Pathol. 36,
493-496.
[22] Baysal, Z., F. Uyar., ¸ E. Aytekin., 2003, Solid state fermentation for production of a-
amylase by a thermotolerant Bacillus subtilis from hot-spring water Process
Biochemistry 38, 1665-1668.
[23] Becerril, C., M. Ferrero., F. Sanz., A. Castano., 1999, Detection of mitomycin C-
induced genetic damage in fish cells by use of RAPD. Mutagenesis 14, 449–456.
[24] Bennett, T. P., E, Frieden., 1969, Modern Topics in Biochemistry, 43-45, Macmillan,
London
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 122
[25] Bensadoun, A., D.Weinstein., 1976, Assay of proteins in the presence of interfering
materials. Anal Biochem, 70(1), 241-50.
[26] Berg, J.M., Tymoczko, J. L., Stryer, Lubert., 2006, Biochemistry, 6 th ed, 207.
[27] Bernfeld, P., 1955, Amylases, alpha and beta. In: Methods in enzymology, vol. 1.
New York: Academic Press, 149-158.
[28] Besbes, N., S. Fattouch., S. Ssadok., 2011, Comparison of methods in the recovery
and amplificability of DNA from fresh and processed sardine and anchovy muscle
tissues Food Chemistry 129,665–671.
[29] Bezerra,R. P., F.K.S.L. Borda., K.A Moreira., J.L Lima – Filho., A. L .F.Porto.,
A.C. Chaves., 2006, Extraction of amylase from fermentation broth in poly(ethylene
glycol) salt aqueous two-phase system, Brazilians arch .Biol. Technol , 49, 547-555.
[30] Bolton, D. J., C. T. Kelly, W. M. Fogarty, 1997, Purification and characterization of
the α-amylase of Bacillus flavothermus Enzyme and Microbial Technology, 20, 340-
343.
[31] Bordbar, A.K., K. Omidiyan., R. Hosseinzadeh., 2005, Study on interaction of a-
amylase from Bacillus subtilis with cetyl trimethylammonium bromide, Colloids
Surf. B: Biointerfaces, 40, 67–71.
[32] Box, G. E. P., N. R. Draper., 1987, Empirical Model Building and Response Surfaces,
John Wiley & Sons, New York, NY.
[33] Bozi. N., J. Ruiz., J. L. Santin., Z. Vuj ci., 2011, Production and properties of the
highly efficient raw starch digesting α-amylase from a Bacillus licheniformis ATCC
9945. Biochemical Engineering Journal 53, 203–209.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 123
[34] Bruinenberg, P.M., A.C. Hulst., A. Faber., R.H. Voogd., 1996, A process for surface
sizing or coating of paper. European Patent Application EP 0,690,170 A1.
[35] Burhan, A., U. Nisa., C. Gokhan., C. Omer., A. Ashabil., G. Osman., 2003
,Enzymatic properties of a novel thermostable, thermophilic, alkaline and chelator
resistant amylase from an alkaliphilic Bacillus sp. isolate ANT-6. Process. Biochem,
38, 1397–1403.
[36] Burbidge, E., B, Collier., 1968, Production of bacterial amylases. Process Biochem,
3, 53-56.
[37] Campbell, N., Reece., 2002, Biology, 6th ed. Don O’Neal ed. Benjamin Cummings
Publishing, Menlo Park, California, 300-340.
[38] Chanda, N., A. S. Nateria., R. H. Sajedib., A. Mahdavic., M. Rassac., 2012,
Enzymatic desizing of cotton fabric using a Ca2+-independent α-amylase with acidic
pH profile Journal of Molecular Catalysis B. Enzymatic 83,46– 50.
[39] Chimata, M. K., C. S. Chetty., C. Suresh., 2011, Fermentative Production and
Thermostability Characterization of α Amylase from Aspergillus Species and Its
Application Potential Evaluation in Desizing of Cotton Cloth, Biotechnology
Research International Volume, 8.
[40] Chuan, S., H. Y. Hong., C. Gang, R. Y. Chun, Z. G.-Heng., G. Z.Yu., L. Jian, J.
P.Na., H.Jiang, G. L. Biao., Q. Q. Zeng., D.Li., 2010,A simple method for
preparation of rice genomic DNA, Rice Science, 17(4),326−329.
[41] Clarke, H., S. T. Cowan., 1952, Biochemical methods for bacteriology. J. Gen.
Microbiol. 6:187–197.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 124
[42] Coronado, M. J., C. Vargas., J. Hofemeister., A. Ventosa., J. J. Nieto., 2000,
Production and biochemical characterization of an a-amylase from the moderate
halophile Halomonas meridian. FEMS Microbiol Lett, 183, 67-71.
[43] Crandall, E., P. Barber., Agarose gel Electrophoresis
www.eeb.ucla.edu/Faculty/Barber/Web%20Protocols/Protocol4.pdf
[44] Cruger, W., A. Crueger, 2003, Biotechnology: A textbook of Industrial Microbiology,
Paniono Publishing Corporation, 191- 195.
[45] Dasa, I. K., B. Fakrudin, D.K. Arorac., 2008, RAPD cluster analysis and chlorate
sensitivity of some Indian isolates of Macrophomina phaseolina from sorghum and
their relationships with pathogenicity Microbiological Research 163, 215-224.
[46] Damhus, T., S. Kaasgaard., H. Lundquist., H. S. Olsen., 2008, Novozymes. 3rd ed,
30.
[47] Damhus, T., S. Kaasgaard., H. Lundquist., H. S. Olsen., 2008, Novozymes. 3rd ed,
35.
[48] Damhus, T., S. Kaasgaard., H. Lundquist., H. S. Olsen., 2008, Novozymes. 3rd ed,
15.
[49] Declerck, N., M. Machius., P. Joyet., G. Wiegand., R. Huber., C. Gaillardin., 2003,
Hyper-thermostabilization of Bacillus licheniformis alpha amylase and modulation of
its stability over a 50°C temperature range. Protein Eng, 16, 287-293.
[50] Demirkan, E. S., B. Mikami., M. Adachi., T. Higasa., S. Utsumi., 2005, α-Amylase
from B. amyloliquefaciens: purification, characterization, raw starch degradation and
expression in E. coli Process Biochemistry, 40, 2629–2636.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 125
[51] Desai, K. M., S. A. Survase, P S. Saudagar, S.S. Lele, R. S. Singhal., 2008,
Comparison of artificial neural network (ANN) and response surface methodology
(RSM) in fermentation media optimization: Case study of fermentative production of
scleroglucan Biochemical Engineering Journal 41, 266–273.
[52] Dettori, B. G., F.G. Priest., J.R. Stark., 1992, Hydrolysis of starch granules by the
amylase from Bacillus stearothermophilus NCA 26, Process Biochem. 27, 17–21.
[53] Dey. N., R. Soni, S.K. Soni., 2002, A novel thermostable -amylase from thermophilic
Bacillus sp. SN-1 and its application in the liquefaction of sorghum starch from
ethanol fermentation. Asian J Microbiol Biotechnol Environ Sci, 4, 159–64.
[54] Di Pinto, A., V. Forte., M. C. Guastadisegni., C. Martino., F. P. Schena., G. Tantillo.,
2007, A comparison of DNA extraction methods for food analysis. Food Control, 18,
76–80.
[55] Difco., 1998, Difco manual, 11th ed. Difco Laboratories, Detroit, MI.
[56] Difco., 1984, Difco manual, 10th ed. Difco Laboratories, Detroit, MI.
[57] Difco Laboratories., 2009, Difco & BBL manual: manual of microbiological culture
media, 2nd Ed, Becton Dickinson and Company, Sparks, MD, 402–403.
[58] Dixon, M., E. C. Webb., 1971, Enzymes, Willam Clowes and Son, London, 950.
[59] Djekrif-Dakhmouche, S., Z .Gheribi-Aoulmi., Z. Meraihi., L. Bennamoun., 2006,
Application of a statistical design to the optimization of culture medium for a-
amylase production by Aspergillus niger ATCC 16404 grown on orange waste
powder. J. Food Eng, 73, 190–197.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 126
[60] Donahue, B.A., S., Yin., J.S. Taylor., D. Reines., P.C. Hanawalt., 1994. Transcript
cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the
DNA template. Proc. Natl. Acad. Sci. USA 91, 8502–8506.
[61] Dong. Y., H. Lin., H. Wang., X. Mo., K. Fu., H. Wen., 2011, Effects of ultraviolet
irradiation on bacteria mutation and bioleaching of low-grade copper tailings.
Minerals Engineering, 24, 870–875.
[62] Dubey, R., J. Kumar., D. Agrawala., T. Char., P. Pusp, 2011, Isolation, production,
purification, assay and characterization of fibrinolytic enzymes (Nattokinase,
Streptokinase and Urokinase) from bacterial sources African Journal of
Biotechnology, 10(8), 1408-1420,
[63] Dubouzet, J. G., N. Murata., K. Shinoda., 1997, RAPD analysis of genetic
relationships among Alstroemeria L. cultivars Scientia Horticulture 68, 181- 189.
[64] Duke, P. B., J. D. Jarvis, 1972, The catalase test-a cautionary tale. J. Med. Lab
Technol. 29(2), 203–204.
[65] Dulley, J.R., P.A. Grieve., 1975, A simple technique for eliminating interference by
detergents in the Lowry method of protein determination. Anal Biochem, 64(1),136–
141.
[66] Dutta, J. R., R. Banerjee., 2006, Isolation and Characterization of a Newly Isolated
Pseudomonas Mutant for Protease Production Brazilian Archives of Biology and
Technology Vol. 49, (1), 37-47.
[67] Ehlers. M. M., T. E. Cloete, 1999, Comparing the protein profiles of 21 different
activated sludge systems after SDS- PAGE. Wat. Res, 33(5), 1181-1186.
[68] Emma, W., C, McSpadden., Production of Industrial Enzymes in Fermentation.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 127
[69] Fall., 2001, Enzyme Kinetics Lab: Amylase Activity. Introduction to Biochemical
Engineering, 52, 108.
[70] Fan, C., Z. Liu., J. Hu., B. N. J. Huang., L. Yao., 2012, Effects of polyethylene glycol
6000 and tripotassium phosphate on protopectinase partition in the aqueous two-
phase systems using response surface methodology. African Journal of Food Science,
6(4), 85-90.
[71] Femi Ola, T.O., B.M. Olowe., 2011, Characterization of Alpha Amylase from
Bacillus subtilis BS5 isolated from Amitermes evuncifer Silvestri. J. microbiology,
6(2), 140-146.
[72] Fersht, A., 1999, Structure and Mechanism in Protein Science: A Guide to Enzyme
Catalysis and Protein Folding. W.H. Freeman and Co.
[73] Fogarty M.W, 1983, In: Microbial Enzymes and Biotechnology, Applied Science
Publishers, 1–92.
[74] Fogarty, W.M., C.T. Kelly., 1979, Starch degrading enzymes of microbial origin.
Prog Ind Microbiol, 15, 87-150.
[75] Fogarty, W.M., C.T. Kelly., 1979, Developments in microbial extracellular enzymes.
In: Wiseman A, editor. Topics in enzyme and fermentation biotechnology, 3, 45-108.
[76] Fogarty, M.W., 1983, Microbial Amylases. In: Microbial Enzymes and
Biotechnology, W.M. Fogarty (Ed.), Applied Science Publishers, 1–92.
[77] Forbes, B. A., D.F. Sahm., A. S. Weissfeld., 2007, Bailey and Scott’s diagnostic
microbiology, 12th ed. Mosby Company, St. Louis, MO.
[78] Francis F, A. Sabu, K. M. Nampoothiri, S. Ramachandran, S. Ghosh, G. Szakacs, A.
Pandey, 2003, Use of response surface methodology for optimizing process
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 128
parameters for the production of α-amylase by Aspergillus oryzae. J. Biochem. Eng.,
15(2), 107-115.
[79] Fukumoto, J., 1943, Studies on the production of bacterial amylase. I. Isolation of
bacteria secreting potent amylases and their distribution" (in Japanese). 19, 487–503.
[80] Gaby, W. L., L. Free. 1958, Differential diagnosis of pseudomonas-like
microorganisms in the clinical laboratory. J. Bateriols. 76, 442–444.
[81] G Bioscience Excellence, Protein Fractionation, Teacher’s Guidebook, Rev: 071302,
BE-413. www.gbiosciences.com/.../633453766598535000.pdf.
[82] G Bioscience Excellence, Protein Electrophoresis, Teacher’s Guidebook, Rev:
060610, BE-406. www.gbiosciences.com/.../633453728455878750.pdf
[83] Gangadharan. D., S. Sivaramakrishnan., K.M. Nampoothiri., R.K. Sukumaran., A.
Pandey., 2008, Response surface methodology for the optimization of alpha amylase
production by Bacillus amyloliquefaciens. J.Bioresource Technology, 99, 4597–4602.
[84] Gangadharan, D., S. Sivaramakrishnan, K.M. Nampoothiri., A. Pandey., 2006. α-
Amylase Production by B. amyloliquefaciens, Food Technol. Biotechnol., 44(2), 269-
274.
[85] Gangadharan, D., K.M. Nampoothiri, S. Sivaramakrishnan., A. Pandey., 2008.
Biochemical Characterization of Raw-starch-digesting Alpha Amylase Purified from
Bacillus amyloliquefaciens. Appl. Biochem. Biotechnol, DOI 10.1007/s12010-008-
8347-4.
[86] Gangadharan, D., K. M. Nampoothiri., S. Sivaramakrishnan., A. Pandey., 2009
Immobilized bacterial α-amylase for effective hydrolysis of raw and soluble starch
Food Research International, 42,436–442.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 129
[87] Garcia-Vallve, S., J. Palau., A. Romeu., 1999, Horizontal gene transfer in glycosyl
hydrolases inferred from codon usage in Escherichia coli and Bacillus subtilis.
Molecular Biology and Evolution 9, 1125-1134.
[88] Geetha, I., A.M. Manonmani., G. Prabakaran., 2011, Bacillus amyloliquefaciens: A
mosquitocidal bacterium from mangrove forests of Andaman & Nicobar islands,
India Acta Tropica 120, 155– 159.
[89] Gerhardt, P., R. G. E. Murray., R. N. Costilow., E. W. Nester., W. A. Wood., N. R.
Krieg., G. B Phillips., 1981, Manual and methods for general bacteriology. ASM
Press, Washington, DC.
[90] Gephart, P., R.G. E. Murray., R. N. Costilow., E.W., Nester., W.A. Wood., N.R.
Krieg., G. B. Phillips., 1981, Manual of Methods for General Bacteriology, ASM
Press, Washington D.C.
[91] Geyikc¸ F., E. Kılıc.¸ S. C¸ Oruh, S. Elevli., 2012, Modelling of lead adsorption from
industrial sludge leachate on red mud by using RSM and ANN Chemical Engineering
Journal 183,53– 59.
[92] Gordon, R. E., W. C. Haynes, and C. Hor-Nay Pang., 1973, The genus Bacillus. U.S.
Department of Agriculture, Washington, D.C.
[93] Gornall, A.G., C.J. Bardawill., M.M. David., 1949, Determination of serum proteins
by means of biuret reaction. J. Biol. Chem., 177,751-766.
[94] Goyal, N., G.S. Sindhu, S.T. Chakraburti., J.K. Gupta., 1995, Thermostability of
alpha amylase produced by Bacillus sp., E2-a thermophilic mutant. J. Microbiol.
Biotechnol, 11, 593-594.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 130
[95] Goyal, N., J.K. Gupta., S.K. Soni., 2005, A novel raw starch digesting thermostable
α-amylase from Bacillus sp.I-3 and its use in the direct hydrolysis of raw potato
starch Enzyme and Microbial Technology 37, 723–734.
[96] Gram, C., 1884, Ueber die isolirte Färbung der Schizomyceten in Schnitt-und
Trockenpräparaten. Fortschritte der Medcin, (2), 185-189.
[97] Gronau, I., S. Moran., 2007, Optimal implementations of UPGMA and other common
clustering algorithms Information. Processing Letters, 104,205–210.
[98] Gunawan, E.R., M. Basri., M. Basyaruddin., A. Rahmana., A. B. Salleh., R. N. Z. A.
Rahman, 2005, Study on response surface methodology (RSM) of lipase-catalyzed
synthesis of palm-based wax ester. Enzyme and Microbial Technology, 37, 739–744.
[99] Gupta. R., P. Gigras., H. Mohapatra., V.K. Goswami., B. Chauhan., 2003, Microbial
α-amylases: A biotechnological perspective, Process Biochem. 38, 1599–1616.
[100] Gupta, A.K., Harish, M.K. Rai., M. Phulwaria., N.S. Shekhawat., 2011, Isolation of
genomic DNA suitable for community analysis from mature trees adapted to arid
environment Gene 487, 156–159.
[101] Guo, W.Q., N.Q. Ren., X. J. Wang, W.S. Xiang, J. Ding., Y. You., B.F. Liu., 2009,
Optimization of culture conditions for hydrogen production by Ethanoligenens
harbinense B49 using response surface methodology. Bioresource Technology, 100,
1192–1196.
[102] Guzman-Maldonado, H., O. Paredes-Lopez., 1995, Amylolytic enzymes and products
derived from starch: A review. Critical Reviews in Food Science and Nutrition 35,
373-403.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 131
[103] Habibi, A. E., K. Khajeh., H. Naderi-Manesh, B. Ranjbar, M. N. Gorgani., 2006,
Thermostabilization of Bacillus amyloliquefaciens-amylase by chemical cross-linking
Journal of Biotechnology 123, 434–442.
[104] Hamilton, L.M., C. T. Kelly, W. M. Fogarty., 1999, Production and properties of the
raw starch-digesting a-amylase of Bacillus sp. IMD 435 Process Biochemistry 35,
27–31.
[105] Hamilton, L.M., C.T. Kelly., W.M. Fogarty., 1999, Purification and properties of the
raw starch degrading a-amylase of Bacillus sp. IMD434. Biotechol Lett, 21, 111-115.
[106] Hamilton, L.M., C.T. Kelly., W.M. Fogarty., 1998, Carbohydrate Research, 314, 251-
257.
[107] Harley, J. P., 2005, Laboratory exercises in microbiology, 6th ed. McGraw Hill, New
York, NY.
[108] Harkulkar, N. L., 2012, Isolation and Quantification of DNA from different evidences
and role of RFLP in DNA fingerprinting. Helix Volume, 1(2), 152-154 .
[109] Harrow, B., A. Mazur., 1958 Textbook of Biochemistry, 109, Saunders, Philadelphia.
[110] Hartree, E.E., 1972, Determination of protein; A modification of the Lowry method
that gives that gives a linear photometric response. Anal. Biochem, 48, 422-427.
[111] Hashemi, M., S. H. Razavi, S. A. Shojaosadati, S. M. Mousavi, K. Khajeh., M.
Safari., 2010, Development of a solid-state fermentation process for production of an
alpha amylase with potentially interesting properties. Journal of Bioscience and
Bioengineering, 110(3), 333–337.
[112] Hashemi, M., S. M. Mousavi., S. H. Razavi, S. A. Shojaosadati., 2013, Comparison
of submerged and solid state fermentation systems effects on the catalytic activity of
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 132
Bacillus sp. KR-8104 α-amylase at different pH and temperatures Industrial Crops
and Products 43, 661– 667.
[113] Haq, I-Ul., H. Ashraf., J. Iqbal, M.A. Qadeer., 2003, Production of alpha amylase by
Bacillus licheniformis using an economical medium. Bioresource Technology 87, 57–
61.
[114] Haq, I., H. Ashraf, S. Omar., M.A .Qadeer, 2002, Biosynthesis of amyloglucosidase
by Aspergillus niger using wheat bran as substrate. Pak. J. of Biol. Sci, 5(9), 962-964.
[115] Haq, I., S. Ali., M.M. Javed., U. Hameed., A. Saleem., F. Adnan., M.A. Qadeer.,
2010, Production of alpha amylase from a randomly induced mutant strain of bacillus
amyloliquefaciens and its application as a desizer in textile industry. Pak. J. Bot,
42(1), 473-484.
[116] Helms, D., C. Helms., R. Kosinski., J. Cummings., 1998, Biology in the Laboratory,
3rd ed. Judith Wilson ed. Freeman Publishing, New York, 91 – 98.
[117] Hendriksen, H. V., S. Pedersen., H. Bisgard-Frantzen., 1999, A process for textile
warp sizing using enzymatically modified starches. Patent ApplicationWO 99/35325.
[118] Henrissat, B. 1991, A classification of glycosyl hydrolases based on amino acid
sequence similiarities, Biochem. J. 280, 309–316.
[119] Hewitt, C. J., G. L. Solomons., 1996, The production of a-amylase (E.C.3.2.1.1.) by
Bacillus amyloliquefaciens, in a complex and a totally defined synthetic culture
medium. Journal of Industrial Microbiology, 17, 96–99.
[120] Holum, J., 1968, Elements of General and Biological Chemistry, 2nd ed., 377, Wiley,
NY.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 133
[121] Holum, J., 1968, Elements of General and Biological Chemistry, 2nd ed., 377, Wiley,
NY.
[122] Hu, H. Q., X. S. Li, H. He., 2010, Characterization of an antimicrobial material from
a newly isolated Bacillus amyloliquefaciens from mangrove for biocontrol of
Capsicum bacterial wilt. Biological Control, 54, 359–365.
[123] Ibrahim, A. D., A. I. Saulawa., A. Sani., D. M. Sahabi., S. A. Shinkafi., A. A.
Aliero., A. Gambo., 2011, Bioutilization of Adansonia Digitata Fruit Pulp By
Bacillus Species For Amylase Production. International journal of plant, animal and
environmental sciences 1,1.
[124] Ide, H., Petrullo, L.A., Hataet, Z., Wallace, S.S., 1991. Processing of DNA base
damage by DNA polymerases — dihydrothymine and b-ureidoisobutyric acid as
models for instructive and noninstructive lesions. J. Biol. Chem. 266, 1469–1477.
[125] Ionov, Y., M.A. Peinado., S. Malkhosyan., D. Shibata., M. Perucho., 1993,
Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism
for colonic carcinogenesis. Nature 363, 558–561.
[126] Irfan, M., M. Nadeem, Q. Syed., 2012, Media optimization for amylase production in
solid state fermentation of wheat bran by fungal strains. Journal of Cell and
Molecular Biology,10(1), 55-64.
[127] Irshad, M., Z. Anwar., M. Gulfraz., H. I. Butt., A. Ejaz., H. Nawaz., 2012,
Purification and characterization of α-amylase from Ganoderma tsuage growing in
waste bread medium. African Journal of Biotechnology , 11 (32),8288-8294.
[128] Isabel, N., J. Belieu., Bausquet., 1995, Complete congruence between gene diversity
estimates derived from genotypic data at enzymes and random amplified polymorphic
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 134
DNA loci in black spruce. Proceedings of the National Academy of Sciences, 92,
6369-6373.
[129] Isenberg H. D., L. H. Sundheim., 1958, Indole reactions in bacteria. J. Bacteriol. 75,
682–690.
[130] Iulek, J., O.L. Franco., M. Silva., C.T. Slivinski., C. Jr. Bloch., D.J. Rigden., M.F.
Grossi de Sa., 2000, Purification, biochemical characterisation and partial primary
structure of a new alpha-amylase inhibitor from Secale cereale (rye). Int J Biochem
Cell Biol, 32, 1195-1204.
[131] Ivanova, V. N., E. P. Dobreva., E. I. Emanuilova., 1993, Purification and
characterization of a thermostable alpha-amylase from Bacillus licheniformis Journal
of Biotechnology, 28, 277-289.
[132] Iyer, B.K., L. Ananthanarayan., 2008, Effect of α-amylase addition on fermentation
of idli-A popular south Indian cereal-Legume-based snack food LWT 41, 1053–1059.
[133] Jaccard, P., 1908, New researches on the floral distribution. Bull. Soc. Vaudoise Sci.
Natl. 44,223-270.
[134] Jain, J. L., S. Jai., N. Jain., 2005, Fundamentals of Biochemistry, 6 th ed, 333.
[135] Janaa, M., C. Maity., S. Samantab., B. R. Pati., S. S. Islamc , P. K. Das Mohapatra.,
K. C. Mondal., 2013 Salt-independent thermophilic α-amylase from Bacillus
megaterium VUMB109: An efficacy testing for preparation of maltooligosaccharides
Industrial Crops and Products 41, 386– 391.
[136] Jyoti, J., N. Lal., R. Lal., A. Kaushik, 2011, Partial purification andcharacterization of
an acidophilic extracellular α-amylase from Bacillus licheniformis Jar 26.
International Journal of Advanced Biotechnology and Research, 2 (3), 315-320.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 135
[137] Kalishwaralal, K., S, Gopalram., R. Vaidyanathan , V. Deepak., S. R. K. Pandian.,
S. Gurunathan, 2010, Optimization of α-amylase production for the green synthesis
of gold nanoparticles Colloids and Surfaces B, Biointerfaces, 77 ,174–180.
[138] Kandra, L., 2003, α-Amylases of medical and industrial importance. Journal of
Molecular Structure (Theochem) 666–667, 487–498.
[139] Kammoun, R., B. Naili, S. Bejar., 2008, Application of a statistical design to the
optimization of parameters and culture medium for a-amylase production by
Aspergillus oryzae CBS 819.72 grown on gruel (wheat grinding by-product)
Bioresource Technology, 99, 5602–5609.
[140] Kammoun, R., H. Chouayekh., H. Abid., B. Naili, S. Bejar., 2009, Purification of
CBS 819.72 α-amylase by aqueous two-phase systems: Modelling using Response
Surface Methodology Biochemical Engineering Journal, 46, 306–312.
[141] Kaufman, B., S. Richards., D. A. Dierig., 1999, DNA isolation method for high
polysaccharide Lesquerella species. Industrial Crops and Products 9, 111–114.
[142] Kenya, J. W., A.G.T. Fernando., M.P.M L|.dia., J. U. Cirano., 2004 , Biochemical
characterization of K-amylase from the yeast Cryptococcus flavus FEMS
Microbiology Letters 231, 165-169.
[143] Khajeh. K., M. M. Shokri., S. M. Asghari., F. Moradian., A. Ghasemi., M. Sadeghi.,
B. Ranjbar., S. Hosseinkhani., S. Gharavi., H. Naderi-Manesh., 2006, Acidic and
proteolytic digestion of α-amylases from Bacillus licheniformis and Bacillus
amyloliquefaciens: Stability and flexibility analysis Enzyme and Microbial
Technology 38, 422–428.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 136
[144] Khajeh, K., H. Naderi-Manesh., B. Ranjbar., A. A. Moosavi-Movahedia., M. Nemat-
Gorgania., 2001, Chemical modification of lysine residues in Bacillus α amylases:
effect on activity and stability Enzyme and Microbial Technology 28,543–549.
[145] Khan, A. A., P. Peiris. , N. Sharma., G. Maddini., V. Raghavan., C. Courteau., 2011,
Effect on Alpha – amylase production by employing polyethylene glycol at different
concentration in medium. American Journal of Food and Technology, 6(4), 289-297.
[146] Khattab A.A., S. A. A. Mohamed., 2012, Mutation induction and protoplast fusion of
Streptomyces spp. for enhanced alkaline protease production. Journal of Applied
Sciences Research, 8(2), 807-814.
[147] Khoo, S.L., A.A. Amirul., M. Kamaruzaman., N. Nazalan., M.N. Azizan., 1994,
Purification and characterization of a-amylase from Aspergillus flavus . Folia
Microbiol, 39, 392-398.
[148] Khuri, A. I., J.A. Cornell., 1987, Response surfaces: design and analysis. New York:
Marcel Decker Inc.
[149] Kiran. K.K., T.S. Chandra., 2008, Production of surfactant and detergent-stable,
halophilic and alkali-tolerant alpha-amylase by a moderately halophilic Bacillus spp.
strain TSCVKK. Appl. Microbiol. Biotechnol, 77, 1023-1031.
[150] Konsoula, Z., M. Liakopoulou-Kyriakides., 2006, Thermostable α-amylase
production by Bacillus subtilis entrapped in calcium alginate gel capsules Enzyme
and Microbial Technology 39, 690–696.
[151] Kostinek, M., I. Specht., V.A. Edward., C. Pinto. , M. Egounlety., C. Sossa., S.
Mbugua., C. Dortu., P. Thonart. , L. Taljaard. , M. Mengu. , C.M.A.P. Franz. , W.H.
Holzapfel., 2007, Characterisation and Biochemical Properties of Predominant Lactic
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 137
Acid Bacteria From Fermenting Cassava For Selection As Starter Cultures
International Journal Of Food Microbiology 114, 342–351.
[152] Kottwitz, B., H. Upadek., G. Carrer., 1994, Applications and benefits of enzymes in
detergent. Chim Oggi, 12, 21 -24.
[153] Kovács, N., 1956, Identification of Pseudomonas pyocyanea by the oxidase reaction.
Nature (London), 178, 703.
[154] Krishna E. R., P. S. Kumar., M.D.A.G.C. Sekhar., B. V. Kumar., 2011, Study on
Marine Sponge isolated bacteria Bacillus subtilis (MTCC No. 10619) producing
Amylase and Protease enzymes Journal of Pharmacy Research. 11, 3925-3927.
[155] Krishnan, T., A. K. Chandra., 1983, Purification and characterization of α-amylase
from Bacillus licheniformis CUMC 305. Appl Environ Microbiol, 46, 430-437.s
[156] Kubota, Y., A. Shimada., A. Shima., 1995, DNA alterations detected in the progeny
of paternally irradiated Japanese medaka fish (Oryzias Latipes). Proc. Natl. Acad. Sci.
USA 92, 330–334.
[157] Kubota, Y., A. Shimada., A. Shima., 1992, Detection of g-ray-induced DNA damage
in malformed dominant lethal embryos of the Japanese medaka (Oryzias Latipes)
using AP-PCR fingerprinting. Mutat. Res. 283, 263–270.
[158] Kumar, N. M., C. Muthukumaran., G. Jayaraman., 2012, Thermostable alpha-amylase
enzyme production from Bacillus laterosporus: Statistical optimization, Purification
and Characterization, Biocatalysis and Agricultural Biotechnology,
http://dx. doi.org/10.1016/j.bcab.2012.10.005, S1878-8181(12)00134-X.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 138
[159] Kumar, P.S., C.R. Elsy, P.A. Nazeem and A. Augustin, 2010, Use of different marker
systems to estimate genetic diversity in the traditional medicinal rice cultivar of
Kerala. Int. J. Plant Breed. Genet., 4, 89-103.
[160] Kumari, A., T. Rosenkranz., A. M. Kayastha., Jörg Fitter., 2010, The effect of
calcium binding on the unfolding barrier: A kinetic study on homologous α amylases
Biophysical Chemistry, 151, 54–60.
[161] Kurosawa, K., T. Hosaka., N. Tamehiro., T. Inaoka., K. Ochi., 2005, Improvement of
α-amlyase production by modulation of ribosomal component protein S12 in Bacillus
subtilis 168. Appl Environ Microbiol 72, 71–77.
[162] Leboffe,M.J.,B.E.Pierce.,2010,Microbiology:laboratorytheoryandapplication,3rded.M
ortonPublishingCompany,Englewood,CO.
[163] Lee, Y.J., B. K. Kim., B. H. Lee., K. I. Jo., N. K. Lee., C.H. Chung, Y.C. Lee., J.W.
Lee., 2008, Purification and characterization of cellulase produced by Bacillus
amyoliquefaciens DL-3 utilizing rice hull Bioresource Technology, 99, 378–386.
[164] Lennette, E.H., A .Balows., W.J. Hausler., H.J. Jr. Shadomy., 1985, Manual of
clinical microbiology, 4th Ed, 918–919, 945.American Society for Microbiology,
Washington, DC.
[165] Leveque, E., S. Janecek., B. Haye., A. Belarbi., 2000, Thermophilic archaeal
amylolytic enzymes. Enzyme and Microbial Technology, 26, 3–14.
[166] Li, W.F., X.X. Zhou., P. Lu., 2005, Stuructural features of thermozymes”,
Biotechnol.Adv, 23, 271-281.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 139
[167] Liao, Y-Chieh., Syu, M.-Jywan., 2009, Effects of poly(ethylene glycol) and salt on
the binding of a-amylase from the fermentation broth of Bacillus amyloliquefaciens
by Cu2+-b-CD affinity adsorbent Carbohydrate Polymers 77, 344–350.
[168] Lipp, M., P. Brodmann., K Pietsch., J. Pauwels., E. Anklam., E. 1999, IUPAC
collaborative trail study of a method to detect genetically modified soy beans and
maize in dried powder. Journal of AOAC International, 82, 923–928.
[169] Lin, L. L., C. C. Chyau., W. H. Hsu., 1998, Production and properties of a raw-
starch-degrading amylase from thermophilic and alkaliphilic Bacillus sp. TS-23.
Biotechnology and Applied Biochemistry, 28, 61–68.
[170] Linden, A., O. Mayans., W. Meyer-Klaucke., G. Antranikian., M. Wilmanns., 2003,
Differential regulation of a hyperthermophilic amylase with a novel (Ca, Zn) two-
metal center by Zinc. J. Biol. Chem, 278, 9875- 9884.
[171] Liu, B.L., Y.M. Tzeng, 1998, Optimization of growth medium for production of
spores from Bacillus thuringiensis using response surface methodology. Bioprocess
Eng., 18, 413–418.
[172] Lonsane, B.K., M.V. Ramesh., 1990, Production of bacterial thermostable a-amylase
by solid state fermentation: a potential tool for achieving economy in enzyme
production and starch hydrolysis. Advances in applied microbiology, 35, 1-56.
[173] Lowry, O.H., N.J. Rough., A.L. Farr., J. Randall., 1951, Protein estimation with the
Folin phenol reagent. J. Biol. Chem., 193, 265-75.
[174] Lui, J.K., P. Jurtshuk. 1986, N, N, N’-N’-tetra methyl-p-phenylenediamine-dependent
cytochrome oxidase analyses of Bacillus species. Int. J. Syst. Bacteriol. 36,38–46.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 140
[175] Lulko, J.W., G. Veenig., M. Kuipers., 2007, Production and screening stress caused
by over-expression of heterogeneous α-amylase pools to inhibition of sporulation of
prolong motile phase in Bacillus subtilis. Appl. Env. Microbiol, 73, 5354-5362.
[176] MacFaddin, J. F. 1980. Biochemical tests for identification of medical bacteria, 2nd
ed. Lippincott Williams & Wilkins, Philadelphia, PA.
[177] MacFaddin J.F., 2000, Biochemical tests for identification of medical bacteria, 3rd
Ed, 412 423. Lippincott Williams and Wilkins, Philadelphia.
[178] MacFaddin, J., 1972, Biochemical tests for the identification of medical bacteria.
Williams and Wilkins Company, Baltimore, MD.
[179] Mars, S.S., H. Mori., H.J. Lee., K. Fukuda., A. Kimura., 2003,Purification and
characterization and sequence analysis of two alpha – amylase isoforms from azuki
bean , Vigna angularis, showing different affinity towards beta – cyclodextrin
sephorose. Bioscience .Biotechnol. Biochemistry, 67, 1080-1093.
[180] Marc, J.E.C., V. Maarel., B. V. Veen., Joost C.M. Uitdehaag., H. Leemhuis., L.
Dijkhuizen., 2002, Properties and applications of starch-converting enzymes of the α-
amylase family Journal of Biotechnology 94,137–155.
[181] Mafra, I., A. Susana., S. E. J.M.O. Moreira, C.S. F. D. Silva., M. Beatriz, P.P.
Oliveira., 2008, Comparative study of DNA extraction methods for soybean derived
food products Food Control 19, 1183–1190.
[182] Mahdavi, A., R. H. Sajedi., M. Rassa., V. Jafarian., 2010, Characterization of an α-
amylase with broad temperature activity from an acid-neutralizing Bacillus cereus
strain. Iranian J. Biotechnol, 8,103-111.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 141
[183] Mahon, C.R, D.C. Lehman., G. Manuselis., 2011, Textbook of diagnostic
microbiology, 4th ed. W. B. Saunders Co., Philadelphia, PA.
[184] Martinek, R., 1969 Practical Clinical Enzymology: J. Am. Med. Tech., 31, 162.
[185] McLeod, J. W., J. Gordon., 1923. Catalase production and sensitiveness to hydrogen
peroxide amongst bacteria: with a scheme for classification based on these properties.
J. Pathol. Bacteriol. 26, 326–331.
[186] Mendu, D. R., B.V.V. Ratnam, A. Purnima., C. Ayyanna., 2005,Affinity
chromatography of α-amylase from Bacillus licheniformis Enzyme and Microbial
Technology 37, 712–717.
[187] Metin. K., Ö. Koç., Z. B. B. Ate_lier., H. H. Bıyık., 2010, Purification and
characterization of amylase produced by Penicillium citrinum HBF62 African Journal
of Biotechnology, 9(45), 7692-7701
[188] Michail. M., M. Vasiliadou., A. Zotos., 2006, Partial purification and comparison of
precipitation techniques of proteolytic enzymes from trout (Salmo gairdnerii) heads
Food Chemistry 97, 50–55.
[189] Micheli M. R., R. Bova., 1997 in: Micheli M.R., Bova R. (Eds.), Fingerprinting
methods based on arbitaryli PCR. Lab Manual, Springer.
[190] Michelle Furlong., Effects of UV Light Exposure on Bacteria, Microbiology for
Health Science Lab 8, 1.
[191] Miller, G.L., 1959, Use of dinitrosalicylic acid reagent for determination of reducing
sugars, Anal.Chem. 31, 426–428.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 142
[192] Milner, J. A., D. J. Martin., A. Smith., 1997, Two-stage inocula for the production of
alpha-amylase by Bacillus amyloliquefaciens Enzyme and Microbial Technology 21,
382-386.
[193] Mishra. S., N. Behera., 2008, Amylase activity of a starch degrading bacteria isolated
from soil receiving kitchen wastes. African Journal of Biotechnology, 7 (18), 3326-
3331.
[194] Mishra, B., M. Boyanov., B. A. Bunker., S. D. Kelly., K. M. Kemner., J. B.Fein.,
2010, High-andlow-affinity binding sites for Cd on the bacterial cell walls of Bacillus
subtilis and Shewanella oneidensis. Geochim. Acta , 74,4219-4233.
[195] Mitsuiki, S., K. Mukaea, M. Sakai, M. Goto., S. Hayashida., K. Furukawa., 2005,
Comparative characterization of raw starch hydrolyzing -amylases from various
Bacillus strains. Enzyme and Microbial Technology 37, 410–416.
[196] Mohammed, M. A. A., N. Shivayogeeshwar., D.M. Gurumurthy., A.N. Rajeshwara.,
2011,Identification, Characterization of Novel Halophilic Bacillus Cereus Ms6: a
Source for Extra Cellular A-Amylase Advances in Environmental Biology, 5(5),992-
999.
[197] Mohandasa., B. J., 2010, A thermoactive -amylase from a Bacillus sp. isolated from
CSMCRI salt farm International Journal of Biological Macromolecules, 47, 288–291.
[198] Mohapatra, M A., U.C Banerjee., M. Bapuji., 1998, Characterization of a fungal
amylase from Mucor sp. Associated with the marine sponge spirastrella sp.
Biotechnol, 60, 113-117.
[199] Morgan, F.J, F. G. Priest., 1981, Characterization of a thermostable aamylase from
Bacillus licheniformis NCIB 6346. J. Appl. Bacteriol. 50, 107-114.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 143
[200] Mori, E., P. L. S. Daly., G. Damianic., B. Peritoa., R. Fania., 1999, Molecular nature
of RAPD markers from Haemophilus influenza Rd genome, Res. Microbiol, 150,
83−93.
[201] Montgomery, D.C. 1997, Introduction to statistical quality control. New York: John
Wiley & Sons.
[202] Moyo, M., S.O. Amoo., M.W. Bairu., J.F. Finnie., J. Van Staden., 2008, Optimising
DNA isolation for medicinal plants South African Journal of Botany 74,771–775.
[203] Mrudula. S., 2010, Production of thermostable alpha amylase by Bacillus cereus MK
in solid state fermentation: Partial purification and characterization of the enzyme.
The Internet J. Microbiol, 8, 1-32.
[204] Muralikrishna, G., M. Nirmala, 2005, Cereal α-amylases - an overview. Carbohydrate
Polymers, 60, 163-173.
[205] Murray, R. K., D. K. Granner., P. A. Mayes., V. W. Rodwell., 2003, 26 th ed, 49- 50.
[206] Na, A., G. H. BO., K. W. Dong., 2009, Genetic Variation in Rhizome Lotus
(Nelumbo nucifera Gaertn. ssp. nucifera) Germplasms from China Assessed by
RAPD Markers. Agricultural Sciences in China, 8(1), 31-39.
[207] Najafi, M.F., D. Deobagkar., D. Deobagkar., 2005, Purification and characterization
of an extracellular α-amylase from Bacillus subtilis AX20. Protein Expression and
Purification 41, 349–354.
[208] Nelson, J.R., C.W. Lawrence., D.C. Hinkle., 1996. Thymine– thymine dimer bypass
by yeast DNA-polymerase-zeta. Science 272, 1646–1649.
[209] Nelson, D. L., M. M. Cox., 2004, Principles of biochemistry, 4 th ed, 191.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 144
[210] Nielsen, A.D., M. L. Pusey., C. C. Fuglsangb., P. Westha., 2003, A proposed
mechanism for the thermal denaturation of a recombinant Bacillus halmapalus α-
amylase—the effect of calcium ions Biochimica et Biophysica Acta, 1652, 52– 63.
[211] Nielsen, J. E., T V. Borchert., 2000, Protein engineering of bacterial α-amylases.
Biochimica et Biophysica Acta, 154 (3), 253-274.
[212] Oboh, G., J. O. Ajele., 1997, Effects of some metallic chlorides on the activity on
beta amylase from sweet potatoes, Biochem. Mol.Bio, 12, 73-75.
[213] Oroian, R.G., T.E. Oroian, Crina Teodora Carsai, Viorica Cosier, L. Sasca., 2009,
Rapd technique used in analyzing the genetic structure of cyprinus carpio species –
galitian and lausitz varieties, Lucrări Ştiinţifice 52,14. Seria Zootehnie.
[214] Oser, B., 1965, Enzymes and their action: cell respiration, In L. Hawk (ed.),
Physiological chemistry, 14th ed. McGraw-Hill, Boston, MA, 434-435.
[215] Oyeleke, S. B., A. A. Oduwole., 2009, Production of amylase by bacteria isolated
from a cassava waste dumpsite in Minna, Niger State, Nigeria. African Journal of
Microbiology Research, 3 (4), 143-146.
[216] Pancha, I., D. Jain., A. Shriv astav., S. K. Mishra., B. Shethiaa., S. Mishra., V.P.
Mohandas, B. Jha., 2010, A thermoactive α-amylase from a Bacillus sp. isolated from
CSMCRI salt farm International Journal of Biological Macromolecules, 47, 288–291.
[217] Pandey. A., 2006, α-Amylases from Microbial Sources – An Overview on Recent
Developments Food Technol. Biotechnol. 44 (2), 173–184.
[218] Prescott. L., J. Harley., D. Klein., 2005. Microbiology, 6th ed.
[219] Pandey, A., C.R. Soccol., D. Mitchell., 2000, New developments in solid state
fermentation: Bioprocesses and products, Process Bioch, 35, 1153.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 145
[220] Pandey, A., P. Nigam, C.R. Soccol, V.T. Soccol, D. Singh, R. Mohan., 2000,
Advances in microbial amylases (review article), Biotechnol. Appl. Biochem, 31,
135–152.
[221] Patel, A. K., K.M .Nampoothiri., S. Ramachandran., G. Szakacs., A. Pandey., 2005,
Partial purification and characterization of a-amylase produced by Aspergillus oryzae
using spent brewing grains, Indian J. Biotechnol, 4,336–342.
[222] Payan, F., 2004, Structural basis for the inhibition of mammalian and insect alpha-
amylases by plant protein inhibitors. Biochim Biophys Acta,1696, 171-180.
[223] Peinado, M.A., S. Malkhosyan., A. Velaquez., M. Perucho., 1992, Isolation and
characterization of allelic losses and gains in colorectal tumors by arbitrarily primed
polymerase chain reaction. Proc. Natl. Acad. Sci. USA 89, 10065–10069.
[224] Pfeiffer, J., 1954, Enzymes, The Physics and Chemistry of Life, 171-173, Simon and
Schuster, NY.
[225] Pfueller, S.L., W.H. Elliott., 1969, The extracellular a-amylase of Bacillus
stearothermophilus. J Biol Chem, 244,48.
[226] Priest, F.G., R.J. Sharp., 1989, Fermentation of bacilli. In Fermentation process
development of industrial organisms, 73.
[227] Raghunathachari, P., Khanna, V. K., Singh, U. S., Singh, N. K., 2000, RAPD
analysis of genetic variability in Indian scented rice germplasm (Oryza sativa
L.).Current Science, 79, 7.
[228] Ramachandran, S., A. K. Patel., K. M. Nampoothiri., F. Francis., V. Nagy., G.
Szakacs., A. Pandey., 2004, Coconut oil cake-a potential raw material for the
production of α-amylase. Bioresour Technol., 93(2), 169-174.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 146
[229] Ramamurthy, V., S.P. Thacker., R. M. Kothari., 1992, Optimized protocol for the
pilot-scale preparation of fungal cellulase. Journal of Industrial Microbiology, 9, 121-
125.
[230] Ramesh, M.V., B.K. Lonsane., 1987, A novel bacterial thermostable alpha amylase
system produced under solid-state fermentation, Biotechnol. Lett. 9, 501–504.
[231] Ranish, J., 2007, Insitute of Systems Biology. Hahn Lab, Methods, Acetone
precipitation.
[232] Rasiah I.A., B.H. Rehm., 2009, One-step production of immobilized alpha-amylase in
recombinant Escherichia coli. Appl. Environ. Microbiol, 75(7), 2012-2016.
[233] Reddy, P.R., B. Ramesh., S. Mrudula., 2003, Optimization of nutrient levels using
response surface methodology, Process Bioch, 39, 26.
[234] Reddy, C. A., 2007, Methods for general and molecular microbiology, 3rd Ed. ASM
Press, Washington, DC.
[235] Reller, L. B., S. Mirrett., 1975, Motility-indole-lysine medium for presumptive
identification of enteric pathogens of Enterobacteriaceae. J. Clin.Microbiol. 2, 247–
252.
[236] Reynolds, J., 2011, Fall, Richland College, BIOL 2420.
[237] Robyt, J., R.J. Ackerman., 1971, Isolation, purification and characterization of a
maltotetraose producing amylase from Pseudomonas stutzeri. Arch Biochem
Biophys, 145, 105-114.
[238] Rodríguez, V. B., E. J. Alameda., J. F. M. Gallegos, A. R. Requena, A. I. G. López.,
J. M. S. Cabral., P. Fernandes., L. Joaquim., P. da. Fonseca., 2006, Modification of
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 147
the activity of an α-amylase from Bacillus licheniformis by several surfactants
Electronic Journal of Biotechnology ,9(5).
[239] Safarikova, M., I. Roy., M.N. Gupta., I. Safarik., 2003, Magnetic alginate
microparticles for purification of α-amylases, J. Biotechnol.105, 255–260.
[240] Sahnoun, M., S. Bejar, A. Sayaria, M. A. Triki. , M. Kriaa., R. Kammoun., 2012,
Production, purification and characterization of two alpha amylase isoforms from a
newly isolated Aspergillus Oryzae strain S2 Process Biochemistry, 47, 18–25.
[241] Saito, N.A., 1973, Thermophilic extracellular a-amylase from Bacillus licheniformis.
Arch Biochem Biophys, 155, 290-298.
[242] Sajedi, R., H. Naderi-Manesh., K. Khajeh., R. Ahmadvand., B. Ranjbar., A.
Asoodeh., F. Moradian., 2005, A Ca-independent α-amylase that is active and stable
at low pH from the Bacillus sp. KR-8104. Enz. Microbial Technol, 36, 666-671.
[243] Sambrock, J., E. F. Fritsch., T. Maniatis., 1989, Molecular cloning: a laboratory
manual (2nd ed.). Cold Spring Harbor, New York: Cold Spring Harbor Laboratory
press.
[244] Sarikaya, E., B. Mikami., 2001, Purification and crystallization of a-amylases from
mucoid and non-mucoid B. amyloliquefaciens strains Journal of Crystal Growth 232,
418–420.
[245] Sarikaya, E., T. Higasa., M. Adachi., B. Mikami., 2000, Comparison of degradation
abilities of a- and b-amylases on raw starch granules Process Biochemistry 35, 711–
715.
[246] Savva, D., 1996, DNA fingerprinrting as a biomarker assay in ecotoxicology.
Toxicol. Ecotoxicol. News Rev. 3, 110–114.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 148
[247] Shah, N., B. C, Bhattacharyya., 1990, Strain improvement: mutagenesis and random
screening procedure for Rhizopus oryzae IIT KG-1, Proceeding of International
Symposium on Industrial Biotechnology, Department of Microbiology, Osmania
Univ., Hyderabad.
[248] Shah, N.K., P.N. Nehete., V.D. Shah., R.M. Kothari., 1989,Isolation of a stable and
high yielding α-amylase mutant of Bacillus subtilis Journal of Biotechnology, 11, 67-
74.
[249] Sharma, A., T. Satyanarayana., 2011 Optimization of medium components and
cultural variables for enhanced production of acidic high maltose-forming and Ca2+-
independent α-amylase by Bacillus acidicola Journal of Bioscience and
Bioengineering, 111 (5), 550–553.
[250] Sharma, S., A. Malik., S. Satya., 2009, Application of response surface methodology
(RSM) for optimization of nutrient supplementation for Cr (VI) removal by
Aspergillus lentulus AML05 Journal of Hazardous Materials,164, 1198–1204.
[251] Shazia. M., T. Iftikhar., I. U. Haq, 2011, Enhanced Amyloglucosidase Biosynthesis
Through Mutagenesis Using Aspergillus Niger Pak. J. Bot, 43(1) 111-119.
[252] Shimada, A., A. Shima., 1998, Combination of genomic DNA fingerprinting into the
medaka specific-locus test system for studying environmental germ-line mutagenesis.
Mutat. Res, 399, 149–165.
[253] Shekarchizadeha, H., M. Kadivar., H. S. Ghaziaskara., M. Rezayat., 2009,
Optimization of enzymatic synthesis of cocoa butter analog from camel hump fat in
supercritical carbon dioxide by response surface method (RSM). J. of Supercritical
Fluids, 49, 209–215.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 149
[254] Shokuhfar, S.M.R. Khalili., F. A. Ghasemi., K. Malekzadeh., S. Raissi., 2008,
Analysis and optimization of smart hybrid composite plates subjected to low-velocity
impact using the response surface methodology (RSM) Thin-Walled Structures 46,
1204– 1212.
[255] Sierecka, J.K., 1998, Purification and partial characterization of a neutral protease
from a virulent strain of Bacillus cereus. The International Journal of Biochemistry &
Cell Biology 30, 579-595.
[256] Silva, C. J. S. M., I. C. Roberto., 2001, Optimization of xylitol production by Candida
guilliermondii FTI 20037 using response surface methodology. Process Biochem, 36,
1119–1124.
[257] Silverthorn., D. Unglaub., 2004, Human Physiology: An Integrated Approach.
Addison- Wesley Publishing.
[258] Sivaramakrishnan, S., D. Gangadharan., K.M. Nampoothiri., C.R. Soccol., A.
Pandey., 2006, α- Amylase from microbial sources - an overview on recent
developments. Food Technology and Biotechnology, 44, 173-184.
[259] Sodhi, H.K., K. Sharma., J. K. Gupta., S. K. Soni., 2005, Production of a
thermostable α-amylase from Bacillus sp. PS-7 by solid state fermentation and its
synergistic use in the hydrolysis of malt starch for alcohol production Process
Biochemistry 40,525–534.
[260] Soni, S. K., A. Kaur., J. K. Gupta., 2003, A solid state fermentation based bacterial a-
amylase and fungal glucoamylase system and its suitability for the hydrolysis of
wheat starch. Process Biochemistry, 39,185-192.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 150
[261] Sorensen, J.F., K.M. Kragh., O. Sibbesen, J. Delcour, H. Goesaert, B. Svensson, T.A.
Tahir, , J. Brufau A.M Perez-Vendrell,. D. Bellincampi, R. D'Ovidio, L Camardella,.
A.Giovane, E. Bonnin, N. Juge, 2004, Potential role of glycosidase inhibitors in
industrial biotechnological applications. Biochim Biophys Acta, 1696, 275-287.
[262] Stanier R.Y., M. Doudoroff., E.A. Adelberg., 1963, The microbial world, 2nd ed.
Prentice-Hall, Englewood Cliffs, NJ.
[263] Sun, H., P. Zhao. Ge., Y. Xia., Z .Hao., J. Liu., M. Peng., 2010, Recent advances in
microbial raw starch degrading enzymes. Appl. Biochem. Biotechnol, 160, 988-1003.
[264] Suman, S., K. Ramesh., 2010, Production of a thermostable extracellular amylase
from thermophilic Bacillus species.Pharm. Sci. & Res, 2(3), 149-154.
[265] Syu. M. J., Y.H. Chen., 1997, A study on the α-amylase fermentation performed by
Bacillus amyloliquefaciens Chemical Engineering Journal, 65, 237-247.
[266] Tanaka. A., E. Hoshin., 2002, Thermodynamic and Activation Parameters for the
Hydrolysis of Amylose with Bacillus α-Amylases in a Diluted Anionic Surfactant
Solution Journal of Bioscience and engineering, 93, 485-490.
[267] Tang, J., Z. Zeng, H. Wang., T. Yang., P. Zhang., Y. Li., A. Zhang., W. Fan., Y.
Zhang., X.Yang., S. Zhao., G. Tian, Li. Zou., 2008, An effective method for isolation
of DNA from pig faeces and comparison of five different methods Journal of
Microbiological Methods, 75, 432–436.
[268] Tayeb, EI. O., A. Hashem., F. Mohammad., M. Aboulwafa., 2007, Optimization of
the industrial production of bacterial alpha amylase in Egypt. Strain selection and
improvement. Proc. 10th Conf. Appl. Microbial.12-14, 419-438.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 151
[269] Tanyildizi, M.S., D. Ozer, M. Elibol, 2005, Optimization of α-amylase production by
Bacillus sp. using response surface methodology, Process Biochem. 40, 2291–2296.
[270] Tanyilidizi, M.S., D. Ozer., M. Elibol., 2007, Production of bacterial α-amylase by B.
amyloliquefaciens under solid substrate fermentation in Biochemical Engineering
Journal, 37, 294–297.
[271] Tanyildizi, M. S., D. Ozer ., 2011, An Investigation of α-Amylase Production in Semi
Solid Substrate Fermentation by Using Corn Bran with Bacillus amyloliquefaciens
.Turkish Journal of Science & Technology , 6(1), 47-52.
[272] Teodoro, C. E. D., M. L. L. Martin., 2000, Culture conditions for the production of
thermostable amylase by Bacillus sp. Brazilian Journal of Microbiology, 31, 298–
302.
[273] Tester, R.F., J. Karkalas., X. Qi., 2004, Starch-composition, fine structure and
architecture. J. Cereal Sci, 39, 151-165.
[274] Thakuria, D., O. Schmidt., M. M. Siurtain., D. Egan., F. M. Doohan., 2008,
Importance of DNA quality in comparative soil microbial community structure
analyses. Soil Biology & Biochemistry 40, 1390–1403.
[275] Thippeswamy, S., K. Girigowda., H.V. Mulimami., 2006, Isolation and identification
of α- amylase producing Bacillus sp. from dhal industry waste. Indian J. Biochem.
Biophys, 43(5), 295-298.
[276] Tolan, J.S., 1996, Pulp and paper. In: Godfrey T, West S, editors. Industrial
enzymology, 2nd ed. New York: Stockton Press, 327-338.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 152
[277] Tsuru, D., 1962, Inhibitory effect of glycine on the production of amylase and
proteinase by Bacillus subtilis. I. Effect of glycine and glycine derivatives on the
enzyme production by washed cells. Agric. Biol. Chem. 26,288-294.
[278] Ulger, C., C. Curakoglu, 2001, Alpha amylase production by bacillus subtilis and B
amyloliquefaciens in different PEG solutions. World J. Microbial .Biotechnol, 17, 93-
94.
[279] Uhling, H., 1988, Industrial enzymes and their applications. Translated and update by
Elfried M. Linsmaier-bednar, Ph.D. New York.
[280] Underkofler, L.A., R .R Barton., S .S Rennet, 1957, Production of microbial
enzymes and their application. Microbial Progress Report, 212 – 221.
[281] Unglaub, D., 2004, Human Physiology: An Integrated Approach. Addison- Wesley
Publishing.
[282] Van der Maarel, M.J.E.C. B. van der Veen, J.C.M. Uitdehaag., H. Leemhuis., L.
Dijkhuizen., 2002, Properties and applications of starch-converting enzymes of the a-
amylase family, J. Biotechnol, 94, 137–155.
[283] Van Ee, J. H., W.C. Van Rijswijk., M. Bollier., 1992, Enzymatic automated dishwash
detergents. Chim Oggi, 10, 21-24.
[284] Vanijajiva, O., P. Sirirugsa., W. Suvachittanont., 2005, Confirmation of relationships
among Boesenbergia (Zingiberaceae) and related genera by RAPD Biochemical
Systematics and Ecology ,33 , 159–170.
[285] Vega- Villasante, F., H. Nolasco., R. Civera., 1993, The digestive enzymes of the
pacific brown shrimp Penaeus californienis: I – properties of amylase activity in the
digestive tract. Compre. Biochem. Physiol, 106, 547-550.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 153
[286] Venter G., 1998, Non-dimensional response surfaces for structural optimization with
uncertainty. Ph.D. thesis. USA, University of Florida.
[287] Via, L. E., J. O. Falkinham., 1995, Comparison of methods for isolation of
Mycobacterium avium complex DNA for use in PCR and RAPD fingerprinting
Journal of Microbiological Methods 21 ,151-161
[288] Vidyalakshmi, R., R. Paranthaman., J. Indhumathi., 2009, Amylase Production on
Submerged Fermentation by Bacillus spp, World Journal of Chemistry 4 (1), 89-91.
[289] Vihinen, M., P. Mantasala., 1989, Microbial amylolytic enzymes. Crit. Rev.
Biochem. Mol. Biol, 24, 329–418.
[290] Vitali R., 2000, Response surface methods for high dimensional structural design
problems. Ph.D. thesis. USA, University of Florida.
[291] Wanderley, K. J., F. Torres., L.M.P. Moraes, C.J. Ulhoa, 2004, Biochemical
characterization of α-amylase from the yeast Cryptococcus flavus FEMS
Microbiology Letters 231, 165-169.
[292] Wang, R., P. Chen., F. Jia., J. Tang., F. Ma., 2012, Macromolecules Optimization of
polysaccharides from Panax japonicus C.A. Meyer by RSM and its anti-oxidant
activity. International Journal of Biological Macromolecules, 50, 331– 336.
[293] Welsh, J., M. Mc Clelland., 1990, Fingerprinting genomes using PCR with arbitrary
primers. Nucleic Acids Res, 18, 7213–7218.
[294] Wheelis, M., 2008, Principles of modern microbiology. Jones & Bartlett Publishers,
Inc., Sudbury, MA.
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 154
[295] White, J.W., H. Neuwirth, C.D Miller., E.L. Schneider., 1990, DNA alterations in
prostatic adenocarcinoma and benign prostatic hyperplasia: detection by DNA
fingerprint analyses. Mutat. Res. 237, 37–43.
[296] Williams, J.G.K., A.R. Kubelic., K.J. Livak., J.A. Rafalski., S.V. Tingey., 1990, DNA
polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic
Acid Res, 18, 6531–6535.
[297] Williams, J. G. K., M.K. Hanafy, J.A. Rafalski and S.V. Tingey, 1993, Genetic
analysis using RAPD markers. Meth. Enzymo, 218: 704–40
[298] Wilson, K., 1987, Preparation of genomic DNA from bacteria. In: Current Protocols
in Molecular Biology (Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D.,
Seidman, J.G., Smith, J.A. and Struhl, K., eds.), 2.4.5, John Wiley and Sons, New
York.
[299] Windish, W.W., N.S. Mhatre., 1965, Microbial amylases, Appl. Microbial, 7, 273.
[300] Whitcomb, D.C., M.E. Lowe., 2007, Human pancreatic digestive enzymes. Dig Dis
Sci 52, 1-17.
[301] Ye, Y.M., J.W. Zhang., G.G. Ning., M.Z. Bao., 2008, A comparative analysis of the
genetic diversity between inbred lines of Zinnia elegans using morphological traits
and RAPD and ISSR markers. Scientia Horticulture 118, 1–7.
[302] Yingbo. D., H. Lin., H. Wang., Xiaolan. Mo., K. Fu., H. Wen., 2011, Effects of
ultraviolet irradiation on bacteria mutation and bioleaching of low-grade copper
tailings Minerals Engineering 24, 870–875.
[303] Zar, M. S., S. Ali., I. Ul. Haq., 2012, Optimization of the alpha amylase production
from Bacillus amyloliquefaciens IIB-14 via parameter significance analysis and
REFERENCES
Dept. of Biotechnology, JJTU, Jhunjhunu Page 155
response surface methodology. African Journal of Microbiology Research, 6(17),
3845-3855.
[304] Zhang, Y. J., Q. Li, Y.X. Zhang., D. Wang., J. Xing., 2012, Optimization of succinic
acid fermentation with Actinobacillus succinogenes by response surface methodology
(RSM) Biomed & Biotechnol 13(2), 103-110.