RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

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RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1

Transcript of RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Page 1: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

RE digests & RE maps

OD and uses

Last class

How to read a paper

Intro to Paper 1

Page 2: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Purifying proteins

Purification – based on what properties?

Page 3: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Purifying proteins - Solubility

[Salt]

Fract

ion

pro

tein

in p

reci

pit

ate

+

+++

----

+

+++

----+

+++

----

+

+++

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Page 4: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Ammonium sulfate precipitation

Page 5: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Getting rid of salt: Dialysis

Page 6: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Ammonium sulfate precipitation

0-40%40-60%60-80%

Bradford assay & enzyme assay (why)?

- Every fraction

Lab

Dialysis

Page 7: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

First evidence of PA-GFP…

Page 8: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Increase in fluorescence of PA-GFP…

Page 9: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

pH affects

Page 10: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Photostability

Page 11: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

OK – what about in cells?

Page 12: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Can we study dynamics?

Page 13: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Lets do a real experiment – live trafficking

Page 14: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Following live trafficking of proteins

Page 15: RE digests & RE maps OD and uses Last class How to read a paper Intro to Paper 1.

Lysosomal trafficking needs microtubules