PHS 398 (Rev. 11/07), Biographical Sketch Format … · Web viewMetagenomic Assembly of Novel...

Karla Heidelberg: Curriculum vitae, Jan 14, 2019

KARLA B. HEIDELBERG

University of Southern California 3502 Trousdale Parkway, SOS B15 Email: [email protected] Angeles, CA 90089 Tel: 213-740-0951

EDUCATION:

1999 Ph.D. Marine Estuarine Environ Sciences; Univ. of Maryland, College Park 1988 B.A. (Honors) Maryville College, Maryville, TN

EXPERIENCE:

2017-pres. Professor Teaching, USC Depts. of Biology and Environmental Studies2014-pres. Director, USC Program in Environmental Studies2014-2017 Associate Professor Teaching, USC Depts. of Biology and Environ. Studies2006-pres. Affiliated Faculty, USC Wrigley Institute Environmental Studies and the

Wrigley Marine Science Center on Catalina Island2006-2014 Assistant Professor, USC Department of Biology2006-2009 Adjunct Research Scientist. J. Craig Venter Institute, Rockville, MD2003-2006 Environmental Genomics Global Program Coordinator/Scientist. J. Craig

Venter Institute, Rockville, MD2004-2005 Adjunct Research Faculty, Dept. of Biology, Univ. of Maryland, College Park2002-2003 Adjunct Teaching Faculty, Dept. of Biology. Hood College. Frederick, MD2001-2003 International Marine Science Policy Advisor. U.S. Department of State,

Office of Oceans Affairs. (AAAS Science and Diplomacy Fellow)1999-2001 Postdoctoral Fellow, Dept. of Biology, Univ. of Maryland, College Park

AWARDS AND RECOGNITION:

2018 California Legislature Assembly Certificate of Recognition for Educational Initiatives benefiting underserved populations

2018-pres USC Center for Excellence in Teaching Faculty Fellow Leadership Institute 2017-pres. USC Center for Excellence in Teaching Associates Award2016-pres. USC Center for Excellence in Teaching Distinguished Fellow2016-2017 US National Academies Education Fellow in the Life Sciences 2014, 2015 USC Mellon Mentoring Award Nomination2012 USC Steven B. Sample Teaching and Mentoring Award2012-pres. Editorial Board, Microbiome 2010-pres. Associate Editor, Frontiers in Aquatic Microbiology (Nature Pub. Group)2005 Meritorious Honor Leadership Award for Global Oceans Initiative, US

Dept. of State2014-2017 Invited faculty to several sorority and fraternity scholarship dinners2004 Superior Honor Award for Overall Job Performance, US Dept. of State2001 Kin Takahashi Award for Young Alumni, Maryville College1997-1999 Board of Directors, Assoc. for the Scien. of Limnology and Oceanography 1998 University Maryland, Dept. of Biology Outstanding Teaching Award1984-1988 Presidential Scholar, Maryville College, + 3 other scholarships

1.


INVITED INTERNATIONAL VISITING SCIENTIST:

2016 Okinawa Institute of Science and Technology (OIST) (Oct 2016)2011 Visiting International Science Fellow – State of Victoria, AUS, Dept. of

Primary Industries and Fisheries, Port Phillip Bay Microbial Ecology. 2011 Universidad Nacional Autónoma de México (UNAM) (May 2011)

Investigations of stromatolite formation in Cuatro Cienagus, MX.2000 Univ. of Newcastle Upon Tyne, UK (Oct-Nov 2000); Coral Reef Ecology

MANUSCRIPTS IN FINAL PREPARATION: (*Graduate and ¶undergraduate co-authors)Ginsburg, D and KB Heidelberg. The incorporation of undergraduate experiential learning

to promote student learning and development in coastal marine science and policy. To be submitted: J. Environ. Stud. and Sci.

Heidelberg, K. Recent environmental changes in the Arctic: A review. For inclusion in a special edition of Springer Verlag book. Lamy, S and J Fawcett (eds).

*Marshall, A, L Phillips, A Longmore, C Tang, KB Heidelberg, P. Mele. Spatial and temporal variability in sediment nitrogen cycling processes in Port Phillip Bay, Victoria, Australia.

¶Solis, P, ¶Aldous J, ¶L Wilson, KB Heidelberg, and WR Miller. Marine tardigrades of North America: Echinscoides sp. found in dry moss on Catalina Island, CA, USA. (Heterotardigrada: Echiniscoidea: Echiniscoididae).

Andrade K, C Castelle, LA Hug, BC Thomas, JB Emerson, C Pan, KB Heidelberg, NC Verberkmoes, RL Hettich, and Banfield JF. Functional response of microbial communities to evaporative concentration of a hypersaline lake.

REFEREED PUBLICATIONS: (*Graduate and ¶undergraduate co-authors)

Impact Factor (as of January 14, 2019)Web of Science h-index 19 (cited 2,971 times)Google Scholar. h-index 23; i10 index 30 (cited 4,759 times)

48. Pasulka, A, S *Hu, PD Countway, KJ Coyne, SC Cary, KB Heidelberg and DA Caron. 2019. SSU-rRNA sequencing survey of benthic microbial eukaryotes from Guaymas Basin hydrothermal vent (submitted) J. Eukary. Microbiol. doi: 10.1111/jeu.12711.

47. Ginsburg DW, KB Heidelberg. 2018. Scientific research diving: Engaging students with unique STEM training opportunities and place-based field experiences. In: Diving for Science 2018. Proceedings of the American Academy of Underwater Sciences 37th Symposium. Eds. Gochfeld DJ, TJ Herrlinger. AAUS, Tahoe City, CA.

46. *Marshall, A, L Phillips, A Longmore, C Tang, K Heidelberg, P Mele. 2018. Primer selection influences abundance estimates of ammonia oxidizing archaea in coastal marine sediments. Mar. Env. Res. doi.org/10.1016/j.marenvres.2018.06.001.

2.


45. *Hu, SK, Z Liu, H Alexander, V Campbell, *P Connell, ST Dyhrman, KB Heidelberg, DA Caron. 2018. Shifting metabolic priorities among key protistan taxa within and below the euphotic zone. Environ. Micro. doi:10.1111/1462-2920.14259

44. Carpenter, KJ, M Bose, L Polerecky, *AAY Lie, KB Heidelberg and DA Caron. 2018. Single-cell view of carbon and nitrogen acquisition in the mixotrophic alga Prymnesium parvum (Haptophyta) inferred from stable isotope tracers and nanoSIMS. Front. Mar. Sci. 5:157 doi:10.3389/fmars.2018.00157.

43. Lie AAY, Liu Z, Terrado R, Tatters AO, Heidelberg KB, Caron DA. 2018. A tale of two mixotrophic chrysophytes: Insights into the metabolisms of two Ochromonas species (Chrysophyceae) through a comparison of gene expression. PLoS ONE 13(2): e0192439. https://doi.org/10.1371/journal.pone.0192439.

42. Terrado, R, Pasulka AL, *Lie AA, Orphan VJ, Heidelberg KB, Caron DA. 2017. Autotrophic and heterotrophic acquisition of carbon and nitrogen by a mixotrophic chrysophyte. ISME J. 11:2022-2034. doi:10.1038/ismej.2017.68.

41. *Lie, AAY, Z Liu, R Terrado, AO Tatters, KB Heidelberg, DA Caron. 2017. Effect of light and prey availability on the gene expression of the mixotrophic chrysophyte, Ochromonas sp. BMC Genomics. 18:163. doi: 10.1186/s12864-017-3549-1.

40. *Liu, Z, SK *Hu, V Campbell, AO Tatters, KB Heidelberg, DA Caron. 2017. Single-cell transcriptomics of small microbial eukaryotes: limitations and potential. ISME J. doi: 10.1038/ismej.2016.190.

39. Caron, DA, H Alexander, AE Allen, JM Archibald, EV Armbrust, C Bachy, A Bharti, CJ Bell, ST Dyhrman, S Guida, KB Heidelberg, JZ Kaye, J Metzner, SR Smith, AZ Worden. 2017. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nat. Rev. Microbiol. doi:10.1038/nrmicro.2016.160.

38. *Holm, J and KB Heidelberg. 2016. Microbiomes of Muricea californica and M. fruticosa: Comparative analyses of two co-occurring Eastern Pacific octocorals. Front. Microbiol. 7:917. doi: 10.3389/fmicb.2016.00917

37. Liu, Z, AC Jones, V Campbell, KB Heidelberg, DA Caron. 2016. Gene expression characterizes different nutritional strategies among three mixotrophic protists. FEMS Microbiol. Ecol. 92: fiw106. doi: http://dx.doi.org/10.1093/femsec/fiw106 fiw106.

36. Liu, Z, *AE Koid, R Terrado, V Campbell, DA Caron, KB Heidelberg. 2015. Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation. Front Microbiol. 6:631. doi: 10.3389/fmicb.2015.00631.

35. *Andrade, K. Logemann, J., KB Heidelberg, *JB Emerson, LR Comolli, LA Hug, AJ Probst, A Keillar, BC Thomas, CS Miller, EE Allen, JM Moreau, JJ Brocks, JF Banfield. 2015. Metagenomic and lipid analyses reveal a diel cycle in a hypersaline microbial ecosystem. ISME J. 9:2697-711; doi: 10.1038/ismej.2015.66.

3.


34. Liu, Z, *AC Jones, V Campbell, KD Hambright, KB Heidelberg, DA Caron. 2015. Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availability. Front. Microbiol. 6:319. doi: 10.3389/fmicb.2015.00319.

33. Tully, B, *J Emerson, *K Andrade, EE Allen, J Banfield, KB Heidelberg. 2015. De Novo Sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape. Archaea, 12 pages, doi:10.1155/2015/875784.

32. Ginsburg, D and KB Heidelberg. 2015. Technical report – Benthic assessment of Ngederrak Reef Marine Conservation Area in the Rock Islands Southern Lagoon. Submitted to the Republic of Palau’s, Koror State Department of Conservation and Law Enforcement.

31. Podell, S, JB Emerson, CM Jones, JA Ugalde, S Welch, KB Heidelberg, JF Banfield, EE Allen. 2014. Seasonal fluctuations in ionic concentrations drive microbial succession

in a hypersaline lake community. ISME J. 8:979-90. doi:10.1038/ismej.2013.221.

30. *Tully B, *R Sanchdevah, KB Heidelberg, and JF Heidelberg. 2014. Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using environmentally derived genomes. Microbiome. 2:34. doi:10.1186/2049-2618-2-34.

29. *Koid, AE, Z Liu, R Terrado, *AC Jones, DA Caron, KB Heidelberg. 2014. Comparative Transcriptome Analysis of Four Prymnesiophyte Algae. PLoS ONE 9(6): e97801. doi:10.1371/journal.pone.0097801.

28. *Emerson, JB, BC Thomas, *K Andrade, KB Heidelberg, and JF Banfield. 2013. New approaches indicate constant viral diversity despite shifts in assemblage structure in an Australian hypersaline lake. Appl. Environ. Microbiol. 79:6755-6764 doi:10.1128/AEM.01946-13.

27. *Emerson, JB, *K Andrade, BC Thomas, A Norman, EE Allen, KB Heidelberg, JF Banfield. 2013. Virus-host and CRISPR dynamics in hypersaline Lake Tyrrell, Victoria, Australia. Archaea. 2013:370871. doi: 10.1155/2013/370871.

26. Heidelberg, KB, WC Nelson, *JB Holm, *N Eisenkolb, *K Andrade, and *J Emerson. 2013. Characterization of eukaryotic microbial diversity in hypersaline Lake Tyrrell, Australia. Front. Microbio. 4:115. doi:10.3389/fmicb.2013.00115.

25. Podell, S, *JA Ugalde, P Narasingarao, JF Banfield, KB Heidelberg, EE Allen. 2013. Assembly-driven community genomics of a hypersaline microbial ecosystem. PLoS ONE 8: e61692. doi: 10.1371/journal.pone.0061692.

24. López-Lozano, NE, KB Heidelberg, WC Nelson, G Bonilla-Rosso, F Garcia-Oliva, LE Eguiarte and V Souza. 2013. Microbial secondary succession in soil microcosms of a desert oasis in the Cuatro Cienegas Basin, Mexico. Peer J. doi: 10.7717/peerj.47.

23. Emerson, JB, BC Thomas, K. Andrade, EE Allen, KB Heidelberg, JF Banfield. 2012. Dynamic viral populations in hypersaline systems as revealed by metagenomic

assembly. Appl. Env. Microbiol. 78: 6309-6320. doi: 10.1128/AEM.01212-12.4.


22. Koid, A*, WC Nelson, A Mraz, KB Heidelberg. 2012. Comparative analysis of eukaryotic marine microbial assemblages from 18S rRNA gene and gene transcript clone libraries by using different methods of extraction. Appl. Env. Microbiol. 78: 3958-3965. doi: 10.1128/AEM.06941-11.

21. Narasingarao, P, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, JJ Brocks,

KB Heidelberg, JF Banfield, EE Allen. 2012. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J. 6: 81–93. doi: 10.1038/ismej.2011.78.

20. Heidelberg, KB. 2011. Octocorals and Ocean Acidification Studies at Catalina. Ocean Bights: Magazine of the Catalina Mar. Soc. 2:3-5.

19. Heidelberg, KB, JA Gilbert, I Joint. 2010. Marine Genomics: At the Interface of Marine Microbial Ecology and Biodiscovery. J. Microb. Biotech. 3: 531-543. doi:

10.1111/j.1751-7915.2010.00193.x.

18. Heidelberg, KB, O’Neil, KL¶, JC Bythell, KP Sebens. 2010. Vertical distribution and diel patterns of zooplankton abundance and biomass at Conch Reef, Florida Keys (USA).

J. Plank. Res. 32: 75-91. doi: 10.1093/plankt/fbp101

17. Mele, P, T Sawbridge, H Hayden, B Methe, T Stockwell, C Pfannkoch, M Lewis, D Tanenbaum, D Rusch and KB Heidelberg. 2010. How does surface soil geomorphology and land-use influence the soil microbial ecosystems in southeastern Australia? Insights gained from DNA sequencing of the soil metagenome. Proc. 19th World Congress of Soil Science, Soil Solutions for a Changing World. 1-6 August 2010, Brisbane, Australia. pp. 12-15. http://www.iuss.org/19th%20WCSS/Symposium/pdf/0445.pdf

16. Thomas, T, D Rusch, MZ DeMaere, PY Yung, M Lewis, A Halpern, KB Heidelberg, S Egan, PD Steinberg, and S Kjelleberg. 2010. Functional genomic signatures of sponge bacteria reveal unique and shared features of symbiosis. ISME J. 4: 1557-1567. doi: 10.1038/ismej.2010.74.

15. Caron DA, AZ Worden, PD Countway, E Demir, KB Heidelberg. 2009. Protists are microbes too: A perspective. ISME J. 3: 4-12. doi: 10.1038/ismej.2008

14. Caron, DA, RJ Gast, PD Countway, KB Heidelberg. 2009. Microbial Eukaryote Diversity and Biogeography. Microbe. 4:71-77.

13. Edgcomb, VP, J Biddle, DA Caron, KB Heidelberg, PD Countway, A Teske. 2009. New frontiers: The evaluation of eukaryotic populations in the deep marine subsurface: Scientific goals and approaches for future ocean drilling projects. White Paper INVEST: IODP Renewal Meeting, University of Bremen, Germany, Sept. 23-25, 2009.

http://www.marum.de/en/Page8824.html.

12. Williamson, SJ, DB Rusch, S Yooseph, AL Halpern, KB Heidelberg, J Glass, C Andrews-Pfannkoch, D Fadrosh, C Miller, G Sutton, M Frazier and JC Venter. 2008.

5.


The Sorcerer II global ocean sampling expedition: Metagenomic characterization of viruses within aquatic microbial samples. PLoS ONE. 3(1): e1456. doi: 10.1371/journal.pone.0001456.

11. Heidelberg, KB, A Allen, R Stepanauskas, F Yildiz, A Murray, M Sullivan, M Yakimov. 2008. Marine Molecular Microbiology - The Great Questions. Report for the Joint US/CIESM Workshop on Marine Genomics: At the Interface of Marine Microbial Ecology and Biotechnological Applications, Monaco 12-14 Oct 2008. http://ec.europa.eu/research/biotechnology/ec-us/docs/monaco.pdf.

10. Yooseph S, G Sutton, DB Rusch, AL Halpern, S Williamson, K Remington, JA Eisen, KB Heidelberg, G Manning, W Li, L Jaroszewski, P Cieplak, CS Miller, H Li, ST Mashiyama, MP Joachimiak, C van Belle, J-M Chandonia, DA Soergel, Y Zhai, K Natarajan, S Lee, BJ Raphael, V Bafna, R Friedman, SE Brenner, A Godzik, D Eisenberg, JE Dixon, SS Taylor, RL Strausberg, M Frazier, JC Venter. 2007. The Sorcerer II global ocean sampling expedition: Expanding the universe of protein families. 2007. PLoS Biol. 5(3):432-466. https://doi.org/10.1371/journal.pbio.0050016. (Journal Cover).

9. Rusch, DB, AL Halpern, G Sutton, KB Heidelberg, S Williamson, … JC Venter. 2007. The Sorcerer II global ocean sampling expedition: Northwest Atlantic through eastern tropical Pacific. PLoS Biol. 5(3):398-431. e77.doi:10.1371/journal.pbio.0050077. (Journal Cover).

8. Remington, KA, KB Heidelberg, JC Venter. 2005. Taking metagenomic studies in context. Trends Microbiol. 13: 404. doi: http://dx.doi.org/10.1016/j.tim.2005.07.001.

7. Heidelberg KB, JF Heidelberg. 2005. Environmental genomics: new secrets from a mysterious ocean. Mar. Tech. Soc J. 39:94-98.

6. Heidelberg KB, KP Sebens, JE Purcell. 2004. Composition and sources of near reef zooplankton on a Jamaican forereef with implications for coral feeding. Coral Reefs. 23: 263-276. doi: 10.1007/s00338-004-0375-0.

5. Heidelberg JF, KB Heidelberg, RR Colwell. 2002. Seasonality of Chesapeake Bay bacterioplankton species. Appl. Env. Microbiol. 68:5488-5497. doi:10.1128/AEM.68.11.5488-5497.2002.

4. Heidelberg JF, KB Heidelberg, RR Colwell. 2002. Bacteria of the gamma-subclass Proteobacteria associated with zooplankton in Chesapeake Bay. Appl. Env. Microbiol. 68:5498-5507. doi: 10.1128/AEM.68.11.5498-5507.2002.

3. Heidelberg, KB, KP Sebens and JE Purcell. 1997. Effects of prey escape behavior and water flow on prey capture by the scleractinian coral Meandrina meandrites, p. 1081-1086. In: HA Lessios and IG Macintyre (eds.) Proc. 8th Int. Coral Reef Symp. Vol. 2. Smithsonian Tropical Research Institute, Panama.

6.


2. Kreps T¶, JE Purcell, KB Heidelberg. 1997. Escape of the Ctenophore Mnemiopsis leidyi from the Scyphomedusa predator Chrysaora quinquecirrha. Mar. Biol. 128:441-446.

1. Ford MD¶, JH Costello, KB Heidelberg, JE Purcell. 1997. Swimming and feeding by the Scyphomedusa, Chrysaora quinquecirrha. Mar. Biol. 129: 355-362. https://doi.org/10.1007/s002270050175.

THESIS:

Heidelberg, KB. 1999. The effects of water flow and zooplankton prey behavior on scleractinian coral heterotrophy. University of Maryland, College Park (USA), 207 pp.

OTHER PUBLICATIONS AND PRODUCTS: (¶undergraduate co-author)

5. Preville, P. 2017. When science students experiment outside the lab, they thrive. Innovative Educators Series featuring K Heidelberg: https://tophat.com/blog/science-students-innovative-educators/

4. KB Heidelberg and D Kim. 2016. USC Wrigley Institute for Environmental Studies Research Experiences for Undergraduates (REU): Coastal Ocean Processes Program Handbook for Mentors and REUs (provided to NSF as a resource for other REU programs).

3. Ziebis W and KB Heidelberg. 2014. Methods in Marine Biology and Biological Oceanography: Class and Laboratory Handbook (course class and lab manual).

2. Kern, H¶ and KB Heidelberg and. 2013. Guide to the zooplankton of Lake Arrowhead, CA.

1. Leigh, S¶ and KB Heidelberg and. 2014. Guide to the zooplankton of Big Fisherman Cove, Catalina Island CA.

GRANT PROPOSALS, AWARDS, COLLABORATIONS AND OTHER FUNDING

Active and submitted grants41. Heidelberg KH et al. (19 collaborators). 2019 (submitted) Living Labs SC/LA. Internal Sustainability Pilot grant $10,000.

40. Nuzhdin, S. et al. (Heidelberg collaborator) (submitted). 2019. Sustainability and Ocean Domestication Initiative: Annotating, immortalizing, and domesticating ocean biodiversity. (30 collaborators)

39. Heidelberg, KB and D Kim. 2018. (recommended for funding) REU Site: Ocean Coastal Zone Sustainability through University of Southern California Wrigley Institute for Environmental Studies. NSF. (2019-2021; $397,916)

39. Heidelberg, KB. USC Dornsife College: Faculty Development Funds. 2018. $1,270 for field teaching resources.

7.


38. Heidelberg, KB and Sohm, J. (awarded) NGPR-3 Early Career Polar Research Conference: Building the Collaborative Networks and providing Professional Training Opportunities to Facilitate Success. NSF. ($99,261).

37. Jacobson, M, et al. (KB Heidelberg Collaborator). Moving from inquiry through innovation to implementation: Facilitating young students and advisors to solve big problems addressing a sustainable earth. The National Academies Keck Futures Initiative (NAKFI). Submitted 3/2018 $500,000.

36. R. Walker and E. Shakhnazaryan (KB Heidelberg as mentor). USC Green Engagement Fund Proposals x 2 for undergraduate-led campus environmental sustainability projects. $6,000 (Nov 2016)

35. Heidelberg, KB. Collaboratory proposal: Broadening Geosciences Preparedness through a Cross-Campus Experiential Partnership. NSF IUSE GEOPATHS (Collaborative proposal with Mt. St. Mary’s University as Prime. $367,000; ($136,083 to USC) (Awarded 2017-2020; GP-EXTRA NSF # 1701058).

34. Heidelberg KB, and D Ginsburg. Pacific Life Foundation Scientific dive training for marine conservation research and education. $13,790 Aug 2016. (declined).

33. Wilson, et al. (KB Heidelberg role as external advisory/oversight panel). Changing the Face of STEM in the U.S. Virgin Islands through Targeted Interventions to Expand Opportunities and Broaden Participation. GEO NSF INCLUDES #1649300. $249,038. Awarded August 2016-2019

32. Heidelberg, KB (PI) and JF Heidelberg. NSF REU Site: Ocean Coastal Zone Sustainability through University of Southern California Wrigley Institute for Environmental Studies. (NSF-OCE #1559941). $313,786. Awarded 2016-2019.

Former Grants

31. ¶Patrick, E, J Dutton, KB Heidelberg. USC Green Engagement Fund proposal Decreased use of plastics on USC campus and at the LA Coliseum (faculty mentor). $1,870. August 2016

30. Heidelberg, KB. NSF REU Site: Ocean Coastal Zone Sustainability through University of Southern California Wrigley Institute for Environmental Studies. Supplemental Award for added undergraduate student involvement (NSF-OCE # 1263356). $32,576. 2014-2016.

29. Heidelberg, KB, Marinelli R. NSF REU Site: Ocean Coastal Zone Sustainability through University of Southern California Wrigley Institute for Environmental Studies (NSF-OCE # 1263356). $273,224. 2013-2017

28. Caron, DA and KB Heidelberg. Comparative Functional Analyses of Mixotrophy among Microbial Eukaryotes. Gordon and Betty Moore Foundation. $1,270,000. 2012-2017

8.


27. Longmore, A, P Mele, L Phillips, KB Heidelberg. Pilot Study of Genomic Indicators of Nitrogen Cycling Processes in Port Phillip Bay. AUS Ministry for Environ. and Climate Change Dept. of Sustainability and Environment (DSE) to Melbourne Water. $119,064 AUD. 2013-2015.

26. ¶Hamanski, N, J Dutton, and KB Heidelberg (faculty advisor). Water Bottle Fill station Installation at LA. Memorial Coliseum. USC Green Engagement Fund. $4,474. 2015-2016

25. ¶Schmeising, A and KB Heidelberg (faculty advisor). Installation of recycling bins along 28th street greek row. $2,600. 2015-2016

24. Heidelberg, KB. USC Ignite campaign fundraising campaign to decrease plastic use). $5,200. 2014 -2015.

23. Heidelberg, KB and Roberta Marinelli. NSF REU Site: Ocean Coastal Zone Sustainability through University of Southern California Wrigley Institute for Environmental Studies. (Supplemental award for professional leadership training of undergraduates and an undergraduate educator). (OCE #1263356). $14,528. 2014-2016.

22. Heidelberg, KB and USC Development Office. Worked with USC Dornsife Development Office to secure donor funds for USC Environmental. Studies Program student educational enhancement. Two awards of $25,000 and $100,000. 2014-2016.

21. Ouellette, AJ, M Kahn, JF Heidelberg, KB Heidelberg, S Michail. Innate enterimmunity during induced Paneth cell deficiency. NIH Exploratory/Developmental Research Grant R21 AI105057-01). (awarded but declined participation with job change). $451.928. 2013-2015.

20. Marinelli, R. Capone DG, Hedgecock D, Heidelberg KB, S. Nuzhdin. Advancing the Research Capability of the USC Wrigley Institute. NSF-Improvements in Facilities, Communications, and Equipment at Biological Field Stations and Marine Laboratories (FSML). $295,122. 2012-2015

19. Marinelli, R and KB Heidelberg. USC Instrumentation Grant: Equipment to facilitate a center for ocean acidification studies at the USC Wrigley Institute. $66,000. 2012-2015

18. Sebens, KP, KB Heidelberg, MJ O’Donnell, and R Elahi. Ocean Acidification: Effects on Reef Coral Calcification, Growth and Associated Microbial Communities (Initially awarded for 2012 but then rescended after federal NOAA Budget reduction). $41,575 + NOAA Aquarius Habitat use 2012-2014

17. Heidelberg, KB. Impacts of ocean acidification on temperate coral growth and associated microbial community assemblage. USC Women in Science and Engineering Major Support for Current Faculty Grant). $25,000. 2011-2012

16. Capone D and D Hutchins. (KBH Collaborator). Climate Change in the Southern California Bight: Integrating Science and Societal Implications. (USC 2020 proposal.

9.


$300,519. 2012

15. Souza et al., (UNAM, Mexico) (KBH Collaborator). Conocimiento y Conservación de la Biodiversidad del Churince, Cuatro Ciénegas, Coahuila (Translation: Knowledge and Conservation of the Biodiversity of the Stromatolites in an Aquatic Reserve in Quatro Ciénegas, Coahuila, MX). World Wildlife Fund. $3,038,000 MX Pesos (no funds to KBH). 2011-2013.

14. Edwards, K et al. (KBH Collaborator). Center for Dark Energy Biosphere Investigations: A center for resolving the extent, function, dynamics and implications of the Sub-seafloor Biosphere: NSF Science and Technology Center (Multi-institute; USC Prime) $25,000,000. 2010-2015.

13. Heidelberg, K, J Heidelberg and DA Caron. Genomic Analysis of Unculturable Microbial Eukaryotic Plankton of the San Pedro Ocean Time Series Station (NSF MCB #0732066). $499,000. 2007-2010.

12. Banfield J, E Allen and K Heidelberg. Comprehensive genomic analysis of salt-impacted microbial communities in their environmental context. (NSF MGSP) $2,086,905 Total; $115,549 to KBH. 2007-2010

11. Heidelberg, K (Subaward). Stromatolite Microbial Biodiversity from Cuatro Cienegas, Mexico. NASA Astrobiology (Prime J. Elser Arizona State University; $12,000 to KBH. 2011.

10. Worden, A. et al. (KH Co-Investigator) Mechanisms of marine protistan predation (eukaryotic genome sequencing at the Joint Genome Institute) DOE Community Sequencing Program (CSP) (equivalent to ~$100,000). 2008-2011.

9. Heidelberg, KB. Rose Hills Foundation Science and Engineering Fellowship. Characterization of Diel Zooplankton Assemblages in Big Fisherman’s Cove, Catalina Island. $500. 2007.

8. Manahan D, Heidelberg, KB. Assisted USC Development Office to secure a donation for a research grade epifluorescent microscope for the USC Wrigley Institute. $27,000 2008.

7. Heidelberg, KB. USC Department of Biology equipment grant. $10,000 matching funds 2007.

6. Kjelleberg, S. et al., (Heidelberg, KB Co-Investigator) Environmental Genomics and Novel Bioactives from Microbial Communities on Living Marine Surfaces. Australian Research Council (ARC). $1,254,227 AUD. 2006-2008.

5. Heidelberg, J, D Rusch, S Williamson. (Heidelberg, KB Collaborator). Environmental Genome Shotgun Sequencing: Microbial Populations off the Coast of Nova Scotia, Canada. NSF Microbial Genome Sequencing Program. $1,200,000. 2005-2008.

4. Mele, P, B Cocks, D Hartman, A Oxley, M Brownstein, JC Venter. (Heidelberg, KB 10.


Collaborator). Biosphere Genomics for Agricultural Systems: Accelerating the Development of DNA-based Tools for Health Using a Biome Sequencing Approach. Dept. Primary Industries, Victoria, AUS. $2,898,575 AUD. 2006-2009.

3. Thomas T and KB Heidelberg. American Australian Association. AUS-US Scientific Exchange. $4,700. 2005.

2. Proposal authored by KBH for Oceans Science Bureau Dept of State. International Aid for Capacity Building to Manage Land-based Sources of Pollution to the Marine Environment. US Department of State for work with the Caribbean and South Pacific Regional Programs. $210,000. 2002-2003.

1. Sebens, KP. (KBH Postdoc as lead). Effects of Water Flow and Prey Behavior on Coral Feeding. NOAA Aquarius underwater habitat use. NOAA/NURC. (Aquarius underwater habitat use) 2000-2001

PROFESSIONAL AFFILIATIONS: 2016 present Southern California Academy of Sciences2014-present Association for Environmental Studies and Sciences (AESS)2013-present Council on Undergraduate Research (CUR)2015-present Am. Assoc. for the Advancement of Science (AAAS)2012-2015 International Society for Computational Biology (ISCB)2011-2013 American Society of Microbiology (ASM)2011-2013 International Coral Reef Society (ICRS)2003-2013 International Society of Microbial Ecology (ISME) 1991-2012 Association for the Sciences of Limnology and Oceanography (ASLO)

CURRICULUM DEVELOPMENT:

2019 Developed and submitted a USC proposal for a joint Environmental USC Viterbi-Dornsife M.Sc. Degree in Environmental Data Science

2018 Created a training module on use of rubrics in the classroom for the USC Center for Excellence in Teaching

2017 Co-developed a new interdisciplinary Thematic Options Honors course (CORE103) in Environ. Sustainability with Archaeologist L. Dodd

2016 Developed STEM-based scientific dive training and research program for NSF REU students on Santa Catalina Island with D. Ginsburg.

Sum 2016 HHMI/National Academy of Sciences STEM Training Summer workshop2016 Co-designed a new PWP Tropical Island Sustainability study abroad field

course with D. Ginsburg (conducted at the Wrigley Inst. and Bahamas) 2015-pres. Designer and Director, USC Minor in Marine Biology (started Spring 2017) 2015-2016 Co-designer BISC 473L Biological Oceanography – Co-Instructed with N.

Levine. Developed all new labs and lectures, including some new approaches using ‘big data’ and modeling.

2014 Revised two courses for new GE Designation (BISC 103, ENST 100)2014 BISC 315: Introduction to Ecology. Redesigned class and labs from a

former instructor. Added a component in computational R training. 2011-2014 BISC 499/457L – Co designed new course (with W. Ziebis) Methods in

11.


Oceanography and Marine Biology (Maymester course)

COURSES TAUGHT: Student Evaluation Ratings scale of 1 (poor) – 5 (excellent)#

StudInstruc. Rating

Course Rating

NEWER EVALUATION SYSTEM INSTRCTIONAL PRACTICES (SCORE OUT OF 4.0)2018 BISC 315: Introduction to Ecology 16 3.82 3.73

BISC 473L: Biological Oceanography (Co-instructed) 15 3.83 3.64CORE 103: Process of Change in Science (Honors) (Co-instructed) 15 3.78 3.56BISC 469: Marine Biology (Co-instructed) 18 3.71 3.58

OLDER EVALUATION SYSTEM (SCORE OUT OF 5.0)2017 BISC 315: Introduction to Ecology 15 4.10 4.00

CORE 103: Process of Change in Science (Honors) (Co-instructed) 18 4.07 3.27BISC 473L: Biological Oceanography (Co-instructed) 12 4.50 4.56BISC 469: Marine Biology 19 4.87 4.73

2016 BISC 103L: General Biology for Environ. and Life (Co-instructed) 52 4.42 3.87BISC 473L: Biological Oceanography (Co-instructed) 8 4.88 4.88BISC 315L: Introduction to Ecology 16 4.47 4.13BISC 530: Advanced Seminar in Plankton Biology (Co-instructed) 6 4.50 4.50

ENST 480L: (PWP) Integrated Ecosyst. Management in Micronesia 19 5.0 5.02016 BISC 469L: Marine Biology 6 4.83 4.80

BISC 352: Conservation Biology (Co-instructed) 6 4.72 4.302015 BISC 315L: Introduction to Ecology 30 4.74 4.26

BISC 473L: Biological Oceanography (Co-instructed) 4 4.75 4.00ENST 480L: (PWP) Integrated Ecosystem Management in Micronesia 18 4.86 4.86BISC 469L: Marine Biology 24 4.83 4.56

2014 BISC 103L: General Biology for Environment and Life (Co-instructed) 48 4.25 3.69BISC 315L: Introduction to Ecology 25 4.75 4.46BISC 457L: (Maymester) Meth. in Oceanography and Mar. Biol. 16 4.90 4.90

2013 BISC 120L: General Biology: Org. Biology & Evolution (Co-instructed) 255 3.80 3.60BISC 530: Adv. Sem. in Plankton Dynamics (Co-instructed) 9 4.86 4.71BISC 457L: (Maymester) Methods in Oceanography and Mar. Biol. 16 5.00 5.00

2012 BISC 120L: General Biology: Org. Biology & Evolution (Co-instructed) 203 4.31 3.67BISC 120L: General Biology: Org. Biology & Evolution (Co-instructed) 266 4.40 3.81BISC 457L: (Maymester) Methods in Oceanogr. and Marine Biol. 16 5.00 5.00

2011 BISC 530: Adv. Sem. in Plankton Dynamics 17 4.71 4.41BISC 499L: (Maymester) Meth. in Oceanogr. and Mar. Biology 6 4.86 4.14

2010 BISC 447L: (Catalina Semester) Island Biogeogr. and Field Ecology 11 4.60 4.40BISC 490: Group Directed Research 11 4.11 3.56

2009 BISC 530: Adv. Sem. in Plankton Dynamics 17 4.9BISC 120L: General Biology: Organismal Biol. and Evol. 210 4.1BISC 490L: Directed Research, Catalina Semester 6 NDBISC 447L: (Catalina Semester) Island Biogeogr. and Field Ecology 6 5.0

2008 BISC 120L: General Biology: Organismal Biol. and Evol. 228 3.92007 BISC 530: Adv. Sem. in Plankton Biology 10 4.7

BISC 490L: Directed Independent Research class 16 4.93 4.75BISC 499L: (Catalina Semester) Island Biogeogr. and Field Ecology 16 4.9

12.


Hood College, Frederick, MD2002 ENV 513: Marine Ecology 37 4.8

University of Maryland, College Park 1999 ZOOL 375: Introduction to Oceanography (Inst. of record as a

graduate student) 63 ND

ZOOL 328: Methods in Oceanography 27 4.061998 ZOOL 210: Animal Diversity (Instruc. of record as a graduate student) 87 ND

ZOOL 375: Introduction to Oceanography 67 4.34ZOOL 328: Methods in Oceanography 34 4.03

SCIENCE AND EDUCATION RELATED MEDIA PRODUCTS

2019 Plasticity Computer Game

2017 Media Interview: National Geographic: Mysterious 'Sea Serpent' Oarfish Resurfaces http://news.nationalgeographic.com/2017/02/pictures-oarfish-philippines/

2016 Media Interview: Update LA: California Faces Crippling Draught: http://templeupdate.com/update-la-california-faces-crippling-draught/

2016 Coordinated and contributed to writing for Dornsife media, which was then featured on NSF website. Senior pursues her passion for scientific diving and marine research. https://dornsife.usc.edu/news/topics/379/national-science-foundation/

2016 Pivot 360 TV. Oceans Experience: a VR Experience for 2016 Ocean Month Interactive. Highlighted a sampling program on aquatic invasive species in waters around Catalina https://www.youtube.com/watch?v=fMPK-9oQ1o0

2016 Pivit TV Participation in ocean educational interviews and footage: https://participantmedia.box.com/s/a8wg1ul4f1hyke7xei6cafgc2dw7whsd

2016 Pivot TV Science Advisor for film production of Philip and Ashley Cousteau Spots: https://participantmedia.box.com/s/5dfatvafyadnuzk2ydycb0l1rgerno9p

2016 Article about mentored undergraduate research. USC News. http://news.usc.edu/103893/usc-student-dives-deep-to-pursue-her-passion-for-marine-research/

2016. Krebs, E, J Delac, and R Smat (KB Heidelberg science advisor). The Nitrogen Cycle (You Tube teaching video. USC Cinematic Arts student project). (First Place at the USC Science Film Competition), https://www.youtube.com/watch?v=PfqvACMyg68

2016 Science advisor for article on microplastics in the oceans. Teen Vogue Magazine. Why the President Banned Your Go-To Face Wash (and why that is a really good thing) Jan 8, 2016

2015 USC News. Article describing mentored students’ experiences. https://news.usc.edu/89031/usc-dornsife-students-make-an-environmental-difference/

13.

https://news.usc.edu/89031/usc-dornsife-students-make-an-environmental-difference/

https://www.youtube.com/watch?v=PfqvACMyg68

http://news.usc.edu/103893/usc-student-dives-deep-to-pursue-her-passion-for-marine-research/

http://news.usc.edu/103893/usc-student-dives-deep-to-pursue-her-passion-for-marine-research/

https://urldefense.proofpoint.com/v2/url?u=https-3A__participantmedia.box.com_s_5dfatvafyadnuzk2ydycb0l1rgerno9p&d=DQMFAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=21XXeBMICD3UlQrKZvNKKw&m=wYoHqC2VKiXD_15V2nXQnsQ3835Y-RwjbJNKcgwLDkU&s=lURYhH4uGsC51t1vzq07zxy_Z7tCmFrv52RtyAWdqBs&e=

https://urldefense.proofpoint.com/v2/url?u=https-3A__participantmedia.box.com_s_a8wg1ul4f1hyke7xei6cafgc2dw7whsd&d=DQMFAg&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=21XXeBMICD3UlQrKZvNKKw&m=wYoHqC2VKiXD_15V2nXQnsQ3835Y-RwjbJNKcgwLDkU&s=neLZDWnep36a1XF0UryWh-MmRFy3aH7j2jMxaCXbce4&e=

https://www.youtube.com/watch?v=fMPK-9oQ1o0

https://dornsife.usc.edu/news/topics/379/national-science-foundation/

http://templeupdate.com/update-la-california-faces-crippling-draught/

https://urldefense.proofpoint.com/v2/url?u=http-3A__news.nationalgeographic.com_2017_02_pictures-2Doarfish-2Dphilippines_&d=DwMFAw&c=clK7kQUTWtAVEOVIgvi0NU5BOUHhpN0H8p7CSfnc_gI&r=21XXeBMICD3UlQrKZvNKKw&m=_XIvQqJDASpuKAhAUNUU5B14m-H_5UYKFu_FcVetT6U&s=C6gLhRP3rsHspK7-_IccVZQtqCwPP419YobSEhCNOwU&e=


2014 USC Dornsife News and Wrigley Institute Bulletin, “Investigating the Venus Flytrap of the Sea” https://dornsife.usc.edu/news/stories/1768/venus-flytrap-of-the-sea/

2013 Maryville College Alumni Magazine. MC student, MC alumna connect for unique internship on Catalina Island. http://www.maryvillecollege.edu/news/2012/1803/student-alumna-connect-for-unique-internship-on-catalina-island/

2009 USC Trojan Family Magazine Article, "Blurring the Lines Between Earth and Life"

2009 USC Web science article (by Tera DeJong) and development of educational/outreach genomics videos. http://college.usc.edu/news/stories/537/the-machine-that-goes-ping/

2008 and 2009. NSF Sponsored Interactive Outreach Website for a Deep Sea Hydrothermal vent cruise using DSV Alvin. (participation by 23 elem. schools) http://www.expeditions.udel.edu/

2008 Antarctica Research Expedition (Jan/Feb 2008) Interactive Educational Outreach Website (including 14 elementary schools) http://www.expeditions.udel.edu/

2007 Interview, Los Angeles TV Channel 5 (KTLA) Gayle Anderson.

2007 Interview, Seti Institute NPR Science Friday Radio Program. DNA: the Nucleotide is Turning.

2005 Discovery Channel Documentary, Science Advisor: Cracking the Ocean Code.

2002 Research Featured in National Geographic Adventure Magazine.

2000 Research and Interview Featured on CNN.com, Nature Section.

2000 and 2001 Interactive Outreach Website, NOAA Sponsored Outreach for Aquarius Underwater Habitat Saturation Research Mission: http://www.uncw.edu/aquarius/

1996 Research Featured in JASON VII Educational Video: Adapting to a Changing Sea.

ADVISING:

Faculty Advisor/Mentor (individual mentoring and classroom observations):2018-pres. Audra Bardsley (Lecturer, Environmental Studies2017-pres. Victoria Petryshyn (Lecturer, Environmental Studies)2016-pres. Trond Sigurdsen (Biology RTPC), mentored through promotion to Asst. Prof.2015-pres. Monalisa Chattergee (Lecturer, Environmental Studies)2014-pres. Oliver Rizk (Biology RTPC), mentored through promotion to Asst. Prof.2014-pres. Jill Sohm (Assistant Professor, Environmental Studies)2014-pres. David Ginsburg (RTPC, Environmental Studies), mentored through promotion to Assoc. Prof. and in grant writing)2014-pres. Kate Svyatets (RTPC, Environmental Studies) mentored through promotion to Asst. Prof.2014-2015 Jason Sylvan (Postdoc then Assistant Research Faculty)

14.

http://www.expeditions.udel.edu/

http://college.usc.edu/news/stories/537/the-machine-that-goes-ping/

http://www.maryvillecollege.edu/news/2012/1803/student-alumna-connect-for-unique-internship-on-catalina-island/

http://www.maryvillecollege.edu/news/2012/1803/student-alumna-connect-for-unique-internship-on-catalina-island/

https://dornsife.usc.edu/news/stories/1768/venus-flytrap-of-the-sea/


Postdoctoral Advisor: 2013-2014 Ramon Terrado, (Co-advised with Dave Caron), 2013-2014 Benjamin Tully

Graduate Advisor: 2014-2018 Alexis Marshall (Co-advisor with P. Mele) - LaTrobe Univ, Melbourne, AUS2010-2015 Johanna Holm, PhD (USC Biology/MEB) – Currently postdoc, Institute for

Genome Sciences at the University of Maryland, School of Medicine 2007-2014 Amy Koid. PhD (USC Biology/MEB); Currently Adjunct Biology Professor at

Mount St Mary's University, Los Angeles, CA. 2009-2012 Nadine Eisenkolb, (USC Biology/MEB) Masters2012 Ella Sieradzki, Fall 2012 lab rotation only2010-2011 Christopher Suffridge Progressive Masters Research2009-2010 Elizabeth Scott, Progressive Masters Research2001-2003 Tonja Slota, MS., Univ. Maryland, Dept. Biology (Co-advisor Ken Sebens)

Graduate Student Committee Service:

Dissertation committees 2017-present Emily Aguirre, USC Dept. Biology (MBBO) 2014-2018 Sarah Hu, USC Dept. Biology (MBBO), Ph.D. 2013-2016 Alle Liu, USC Dept. Biology (MBBO), Ph.D. 2009-2012 Adriane Jones, USC Dept. Biology (MBBO) Ph.D. 2009-2012 Diane Kim, USC Dept. Biology (MBBO) Ph.D. 2009-2011 Beth Stauffer, USC Dept. Biology (MBBO) Ph.D. 2007-2012 Rowan Martindale (outside member), USC Dept. Earth Sciences Ph.D.

Screening or Qualifying committees, USC Dept. Biology (MBBO)(*Ph.D.; #Masters) 2017-present Wyatt Million, Maria Ruggeri, Yingqi Zhang

2016 *Margaret Brisbin, Okinawa Inst. of Science & Technology Graduate Institute; 2014- 2015 *Bonita Lam; 2012-2013 #Melissa Madison, 2012-2013, *Elizabeth Teel, 2012-2013 #Bridget Seegers; 2010-2012 #Emily Small, 2010-2011 #Jason Vu; 2011 #Elizabeth Yu; 2010-2011 #Cynthia Breene; 2008-2010 #Maria Paola Intermaggio

International External Ph.D. committee member 2015-2018 Alexis Marshall, LaTrobe Graduate Research School, La Trobe University, Victoria AUS. 2016-2017 Berhard Tschitschko, School of Biotech. & Biomolecular Sci, UNSW, AUS. 2008 Sharon Longford, Univ. New South Wales, AUS, , 2016-2017 Margaret Mars Brisbin, Okinawa Inst. of Science and Tech (OIST), Japan

Undergraduate Research mentoring: Tristan Jordan-Hoffman (2017-2018); (need to add others) Elaine Krebs (2016);

Savannah Benes (F2016), Paul Solis (2016 NSF summer REU), Elliot Patrick (S2106), Chrystal Li (S2015), Michael Young (S2015), Andrea Kemp (S2015), Mathew Enlow (F2015), Christa Gago (2015 WiSE Undergraduate Summer Fellowship faculty sponsor), Jennifer Aldous (2015 NSF summer REU), Lauren Wilson (2015 NSF summer REU),

15.


Elaine Krebs (2014-2015), Dana Handy (2015), Christina Liu (2014 NSF REU), Jordan Hoesse (2013-2014), Kieran Bartholow (2013 NSF summer REU), Kevin Kim (2012-2013), Samantha Wright (2012 Summer SURE Fellow+ Fall 2012), Nicole McNabb (2012 Summer SURE Fellow), Alberto Vega (Summer 2011), Teja Vepa (Summer 2008), Christopher Schwarcz, (2007 NSF summer REU), Primary mentor for 27 other Catalina Semester Independent Research student projects (2007-2011); 1998-2001 Keri O’Neill, BS, UMD, Dept. Biology, Honors Independent Res. (Co-advisor with K. Sebens)

High-School student research project mentoring: 2014-2015 Margaret Tajirian (Palos Verdes HS) 3rd place regional science fair; 2011

Monica Perez, Summer Minority STEM Fellow; 2011 Elizabeth Vidar; 2009 Haley Kern (summer project); 2008 Adam Rivkin (summer project)

SERVICE TO THE PROFESSION (EXTERNAL TO USC)

Journal editorial boards2010-pres. Associate Editorial Board, Front in Microbiology (Nature Publish. Grp.)2011-2018. Editorial Board, Microbiome

Journal Manuscript reviewer 2006-present, as needed. Front. Microbiology, Microbial Ecology, J. Plankton Research, Coral Reefs, Marine

Biology, Marine Ecology Progress Series, PLoS Biol., ISME J, BMC Genomics, Marine Drugs

Federal or State Agency Consulting or Review panels 2018-2021 Member, Appointed to the College of Reviewers for the NSF Undergraduate Education Division (3 yr-term)2016-2019 External Peer Review Team: Chicago Area Waterway Syst. Microbiome Res.2016-2017 External Peer Review Team: NY Area Waterway Syst. Microbiological

Assessments2006- pres. Research review panels: NSF panels (1-per year plus ad hoq proposals)

2008-present); Bill Gates Foundation (2015, 2016); AAAS Policy Fellows (2009, 2015, 2017); DOE Joint Genome Institute CSP Panels (2011, 2012, 2013, 2014, 2017); USC NOAA Sea Grant (2012, 2013, 2014, 2017); Hudson River Foundation (2012); Maryland Sea Grant (2008); NASA Exobiology Panel (2006)

Leadership Roles in National and International Conferences2016 Council of Undergraduate Research Annual Meeting- Organization Committee2016 Geosciences REU Workshop, Boulder, CO-organizational Committee 2015 Council of Undergraduate Research Annual Meeting- Organization Committee2015 Co-organizer NSF New Generation of Polar Researchers (NGPR) Leadership Symp.2014 NSF GEO IUES Ideas Lab (Invited Workshop): Proposal to develop innovative STEM training in the GeoSciences 2014 SACNAS student presentation judge and co-lead for student research daytrip 2012 AGU/ASLO Ocean Science Meeting (session chair) 2011 eSEM Training Workshop leader. NSF C-DEBI Summer Course for Undergraduates Global Environmental Microbiology Program

16.


2011 eSEM Instrument Training Workshops (x 2 groups). Int. Geobiology Course. USC Wrigley Institute. 2010 Workshop Organizer, MOTHER Bioinformatics tools training, USC campus2008 454 Pyrosequencing training workshops for graduate students and postdocs 2007 NSF Ocean Sciences Supported Centers of Excellence in Educ., COSEE-West

Science Retreat for HS Teacher Training. Cabrillo Marine Aquarium. 2007 454 Pyrosequencing training workshops for graduate students and postdocs 2009-2011 NSF Research Coordination Network Workshops (Session chair)2008 Int. Soc. Microbial Ecology (ISME) Meeting, Cairns, AUS (co-chair, 2 sessions)2006 Session Chair, Am. Soc. Limnology and Oceanography. Honolulu, HI. 2009-2012 Chair, Int. Scientific Sediment Steering Committee, NSF C-Debi workshop2008 Member, US-European Union Task Force on Biotechnology Res., The Interface of Marine Microbial Ecol. and Biotech. Applications. Monte Carlo, Monaco2008 Participant, NSF COSEE National Meeting, Catalina Island, CA.2008 Guest lecture, NSF REU Wrigley Summer Student Fellow Program 2007 Invited Int. Expert Panel. Workshop to Develop an Environmental Protected Zone associated with Microbial Stromatolites at Cuatro Cienegas, MX. 2003 Co-Organizer, Int. Science Symposium to develop science-based treatment standard for inclusion in the IMO Ballast Water Treaty. U.S. Dept. of State.2003 Co-Author, U.S. Oceans Initiative, White Water to Blue Water. World Summit on Sustainable Development. Johannesburg, South Africa 2003-2004 Member of 4 US Government Int. Diplomatic Delegations related to Oceans. 2003 Organizer, Environmental Genomics Workshop for Central & South American Scientists 1996 Scientific Advisor, Jason VII Expedition, NOAA/NURC Aquarius Underwater Habitat

SERVICE TO USC College/University Level Service:2019 Dornsife Committee on Faculty Evaluation Appeals2018 USC Parents weekend presentation: Ginsburg, D and KB Heidelberg. 2018.

Scientific Research Diving: Engaging Students with Unique STEM Training Opportunities and Place-Based Field Experiences.

2018-2021 Center for Excellence in Teaching’s Inaugural Faculty Fellow Leadership Institute Mentor

2018 2017-pres2017-pres.

Advisory Board for USC Undergraduate Advising Program self-studyAdvisory Board for the Office of Experiential LearningUSC Dornsife College RTPC Faculty Promotion Committee

2017-pres Provost’s Center of Excellence in Teaching Advisory Panel Working Group to improve USC undergraduate education

2014-pres USC Admissions: Scholarship Interview committees; faculty panels; parent dinners; special recruiting events.

2017-pres USC Center for Excellence in Teaching (CET) Advisory Board2017, 2018 Fisher Fellow Selection Committee2017, 20182018

University hosted STEM workshop for Los Angeles teacher/student trainingTeaching module development with the Center for Excellence in Teaching

2017-pres Dornsife College Hiring and Promotion Review Committee 2017, 2018 Center for Excellence in Teaching. Teaching with Technology Workshop

Session Moderator17.


2016-2018 Faculty Sustainability Committee Taskforce 2016- pres. Director, Minor in Marine Biology2016 Search Committee: USC Wrigley Director2016-2017 Search Committee: Erburu Chair (joint IR, Gender Studies, Environmental

Studies)2015, 2016 Invited Speaker. Dornsife CALIS Program Teacher training climate change

workshop for curriculum reform in high school teaching.2014-pres. Director, Program in Environmental Studies2015 Plenary speaker, USC Keck School of Medicine Associates Day2015 Thursdays with Morrie: Professor Appreciation Day Panelist2007-pres. USC Diving Control Board 2014-2017 USC Norman Topping Student Aid Fund Governing Board2014-2015 Explore USC Faculty Panels (recruiting events)2014, 2015 USC Parents Association Annual Meeting Guest Lecturer2009-2014 Computational Molecular Biology NIH Training Program Mentor (cross

disciplinary graduate fellowship program based at Keck) 2013 Organized/hosted University Speaker Rita Colwell (former Head NSF)2012, 2014 Lecture/Host, USC Parents Weekend, USC Wrigley Marine Science Center 2011 Faculty representative and Lecture, USC Donor Dinner2010-2011 Faculty Representative, USC Wrigley Advisory Board 2010 USC Commencement Marshall 2009 Arranged/Hosted College Intersection Speakers: Ginger Armbrust (U.

Washington); Mitch Sogin (MBL, Woods Hole) 2011-pres. Lectures, NSF REU Wrigley Summer Student Fellow Program Training2008-2009 Seminar Series Organizer: Prog. in Microbiology and Microbiol. Systems. 2007 Hosted USC Dean H. Gillman/USC donor group. Wrigley Mar. Sci. Center. 2007 Speaker, USC Wrigley Institute Environmental Studies Advisory Board.

2008-2011 Committee member, feasibility of a USC PhD program in Microbiology. 2007-pres. USC Hyperbaric Dive Chamber Emergency Response Team. 2007 Hosted, Dr. D. Walker, Sr. Advisor to the White House, Office Sci & Tech. Policy (OSTP). 2007, 2012 Lecture, Friends of the Wrigley Institute. Long Beach, CA. May 20072006-pres. Frequently host and dinners with USC donors at both WMSC and UPC 2006-pres. Resident Faculty: USC Wrigley Marine Science Center, Catalina Island. Frequent assistance with high level donors and visitors.

USC Departmental Level Service2017, 2018 Dept. Biology Faculty merit review committee 2015-pres. Director, Program in Environmental Studies2016-pres. Director, Dept. Biology Minor in Marine Biology2014-pres. Chair, Environmental Studies, RTPC Faculty hiring committee 2018 Member, Biology Department, RTPC Faculty hiring committee2012-pres Biology Department RTPC Faculty Review Committee2016 Chair, Program in Environ. Student Undergraduate Mentoring Committee2016-pres Member, Program in Environmental Studies Curriculum Committee2015 Chair, O. Rizk Faculty Eval. Committee for promotion to Assistant Professor Member, T. Sigurdsen Faculty Eval. Promotion Committee to Assist. Prof.2013 - 2014 Department of Biology/MEB faculty hire committee2012 - 2013 Department of Biology MBBO Recruitment Committee

18.


2011- 2013 Department of Biology/MEB Seminar Series Organizing Committee 2008 - 2012 Department of Biology/MEB Facilities and Space Committee 2009 - 2012 USC Catalina Semester Program Review committee 2009 USC Wrigley Institute Boat Captain Search Committee2008-2010 USC Wrigley Institute Vision/Directions Committee 2008-2011 USC Wrigley Institute Oversight/Resources Committee 2013 NSF REU Program Professional Development Seminar series2013 Invited Seminar. UCLA Minority Access to Research Careers (MARC) U* Program.2013 USC Peaks and Professors Beach Crawl with students2013 Long Beach Aquar. of the Pacific Teacher Training workshop Invited speaker 2013 Lecture, Ánimo Leadership Charter High School/Quick Science Team Science Day2012 USC Dept. of Biology. Genomics Enabled Studies of Microbial Ecology. 2012 Science talk, host to Mork Family Scholars at Wrigley Inst. (w/Pres. Nikias)2012 USC Athletic Department Student-Faculty Appreciation Dinner2012 USC Parents Association Retreat Plenary Speaker2012 Lecture, Downey High School, Science Teacher Training (2 lectures) 2011 Lecture, Invited Seminar. UCLA Minority Access to Research Careers (MARC) U* Program.2011 (Lecture and Lab) NSF C-DEBI Summer Course for Undergraduates 2011 Lecture and Lab, NSF/C-DEBI Summer Course for Undergraduate Global Environmental Microbiology (GEM) Course2011 Lecture, QuickScience Teacher Training, Los Angeles, CA.2011 Lecture, Harvey Westlake Middle School science day at USC Wrigley Inst.2010 eSEM Instrument Training Workshop. International Geobiology Course. 2009 Invited panelist. Female Undergraduates Educating and Leading in Science (FUELS). Co-Sponsored by USC College and Medical School. 2009 Invited Seminar. UCLA Minority Access to Research Careers (MARC) U* Program.2008 Lecture, NSF REU Wrigley Summer Student Fellow Program 2008 Scientific Advisor, Southwestern Regional Ocean Science Bowl. 2008 Lecture, Woodrow Wilson High School retreat to USC Wrigley Institute.2007 Scientific Advisor, Southwestern Regional Ocean Science Bowl. 2007 Scientific Advisor, Aquarium of the Pacific Cnidarian Educational Display. 2007 Lecture, Chadwick High School Science trip to Wrigley Institute. 2007 Organizer, Avalon School Science Day, Wrigley Institute. 2007 Public Lecture, USC Wrigley Institute. 2007 Middle/High school science teacher training retreat. USC Wrigley Institute.

Guest Course Lectures within USC 2018 ENST 370: The development and implementation of Marine Protected Areas 2017 BISC 194: Molecular applications to evaluate questions in Ecology 2016 ENST 100 Introduction to Environ. Studies (12 lectures while new faculty was hired) 2016 ENST 540: Coastal Zone Management (8 lectures while new faculty was hired) 2015 BISC 431 Aquatic Microbiology Guest lecture and lab 2015 ENST 100 Introduction to Environmental Studies 2014 ENST 480 Guest lecture: Integrated Ecosystem Management in Micronesia 2014 ENST 100 (9 uncompensated lectures in 2014 to cover for faculty vacancy)

19.


2014 ENST 540 California Coastal Zone Policy (7 lectures, coverage for faculty) 2013 BISC 431 Environmental Microbiology 2013 BISC 584 Faculty Lecture Series 2012 BISC 599 Special Topics: Marine Microbial Genomics Guest Lecture 2011 BISC 584 Marine Biology and Biological Oceanography Faculty Lecture Series 2011 ENST 499: USC Ecosystem Management for Biodiversity and Conservation 2010 BISC 584: Marine Biology and Biological Oceanography Faculty Lecture Series 2010 BISC 499: USC Problems without Passports, The Ocean in a Changing World 2010 BISC 103L: General Biology for the Environment and Life 2010 BISC 599: Special Topics: Marine Environmental Genomics 2009 BISC 584: Marine Biology and Biological Oceanography Faculty Lecture Series 2009 BISC 121: (2 guest lectures) Hosted visit to USC Wrigley Institute

PROFESSIONAL PRESENTATIONS: (†Undergraduate and *Graduate students)

2019Heidelberg, KB. 2019. Panel moderator. Environment and Sustainability Session. USC OwnIt USC student conference. Los Angeles, CA Jan 12, 2019 2018Heidelberg, KB. 2018. Major Arctic Challenges- Climate Change in the Arctic: A Biological

Perspective. 2018 Arctic Conference. Conference for Arctic Council Member States for discussions on Arctic Security and Governance, Maritime Activity, Human Security and the future of Arctic Policy. Sponsored by the Task Force on Global and Political Studies of the USC Dana and David Dornsife College of Letters, Arts and Sciences, the USC Sea Grant Program and the USC Paul Hall Endowment for Marine Transportation Studies. April 11-12, 2018. Plenary Talk

Heidelberg, KB. 2018. Methods in Ocean Science. Mathematics, Engineering, Science Achievement (MESA) College and Career Day for LA regional middle and high school educationally and economically disadvantaged students and their families led by a partnership between USC and State Assembly Member Reginald Jones-Sawyer. Session Talk.

Jones, A, D Kim, K Heidelberg, X Cheng, and J Dutton. 2018. Broadening Geosciences Preparedness through a Cross-Campus Experiential Partnership. Am. Geophysical Meeting. Dec 10-14. Washington DC. Poster.

†Jordan-Huffman, T, D Kim, D Ginsburg, K Heidelberg, I Navarrete. 2018. Growth and Loss Rates of Juvenile Macrocystis pyrifera Near Santa Catalina Island. (Poster). USC Summer Undergraduate Research Symposium. Los Angeles, CA.

Kim, DY, J Dutton, D Ginsburg and KB Heidelberg. 2018. The USC Wrigley Institute REU Program: Collaborations that strengthen student experiences. NSF GEO REU PI Workshop Sept. 14-15, NCAR, Boulder, CO

Ginsburg, DW and KB Heidelberg. 2018. Scientific research diving: Engaging students with unique STEM training opportunities and place-based field experiences. Proc.

20.


American Academy of Underwater Scientists Annual Meeting. University of California, Davis and University of California, Berkeley Oct. 9-13, 2018, Tahoe City, CA

Heidelberg, KB. Climate Change and the Arctic: A Biological Perspective. Panel on Major Arctic Challenges. 2018 Arctic Conference. University of Southern California. April 2018. Invited Talk.

*Marshall, A., L. Phillips, A. Longmore, C. Tang, K. Heidelberg, P. Mele. Identifying biomarkers of microbial nitrogen cycling in coastal sediments, ECSA 57: Changing estuaries, coasts and shelf systems - Diverse threats and opportunities. 3-6 September 2018, Perth, WA, Australia

Heidelberg, KH. 2018 Aquarium of the Pacific guest lecture

2017Heidelberg, K. Challenges of engaging and training the next generation of scholars in

climate science issues. Pacific Council Members Weekend, Oct 13-17th, Los Angeles, CA. Invited Plenary Panelist

*Marshall, A., P Mele, L Phillips, A Longmore, C Tang, K Heidelberg. Community level strategies: Understanding the microbial game plan for nitrogen removal in Port Phillip Bay. The inaugural Australian Microbial Ecology (AusME) Symposium February 2017. Talk

†Solis, P., WR Miller, DY Kim, E Perry, KB Heidelberg. 2017. Classification of Tardigrades on Catalina Island. Cal State Dominguez Hills Undergraduate Research Symposium. March 2071. Talk.

*Lie, AL, Z Liu, R Terrado, AO Tatters, KB Heidelberg, DA Caron. 2017. Bacterivory enhances the phototrophic capabilities of an obligate phototrophic Ochromonas sp. (Chrysophyta), Assoc. for the Sciences and Limnology and Oceanography Honolulu, Hawaii, Feb 2017. Poster.

*Hu, SK, Z Liu, L Mesrop, P. Connel, H Alexander, S Dyrman, KB Heidelberg, DA Caron. 2017. Aloha &SPOT: A metatranscriptomic comparison of key protistian taxonomic groups and processes within and below the euphotic zone. Association for the Sciences of Limnology and Oceanography. Feb 26-March 3 2017. Honolulu Hawai’i. Poster

2016*Marshall, A, P Mele, L Phillips, A Longmore, C Tang, and K Heidelberg. The role of the

sediment microbiome in the removal of nitrogen from Port Phillip Bay. New Zealand Microbial Ecology Conference (18/02/16)

Heidelberg, KB. 2016. Genomics enabled studies of microbial ecology. Okinawa Institute of Science and Technology, Okinawa, Japan. October 2016. Invited Talk.

Heidelberg, KB. 2016. Recruiting a multi-institutional and inter-disciplinary team of faculty and near-peer research mentors to address challenges at a field station. Research Experiences for Undergraduates (REU) PI Meeting, Boulder CO, Sept 2016 Poster

21.


†Solis, P., WR Miller, DY Kim, E Perry, KB Heidelberg. 2016. Classification of Tardigrades on Catalina Island. USC Undergraduate Summer Program Research Symposium. University of Southern California. August 2016. Poster.

Heidelberg, KB, DY Kim. Large STEM dataset portals and place-based education of undergraduate students: Don't tell them – show them approaches. Southern California Academy of Sciences. Los Angeles CA. May 2016 (Invited talk).

*Hu, S, Z Liu, *P Connell, V Campbell, KB Heidelberg, H Alexander, S Dyhrman, and DA Caron. 2016. Metabolic potential of eukaryotic communities off the coast of southern California. EMBO | EMBL Symposium: A New Age of Discovery for Aquatic Microeukaryotes. Heidelberg, Germany. Jan 2016.

Countway, PD, AL Pasulka, LY Mesrop, *SK Hu, KB Heidelberg, KJ Coyne, SC Cary, and DA Caron. Microbial Eukaryotes from the Deep: Revealing the Diversity of Protists and their Trophic Relationships at Hydrothermal Vents. Protist 2016. Moscow Forum.

*Lie, AAY, Z Liu, R Terrado, AO Tatters, KB Heidelberg, and DA Caron. 2016. Gene expression of a mixotrophic chrysophyte under different resource availability. EMBO | EMBL Symposium: A New Age of Discovery for Aquatic Microeukaryotes. Heidelberg, Germany. Jan 2016 Poster.

Lie, AAY, Liu, Z, Terrado, R, Tatters, AO, Heidelberg, KB, Caron, DA. Gene expression of a mixotrophic chrysophyte under different resource availability. EMBO A new age of discovery for aquatic microeukaryotes. Heidelberg, Germany. 2016 Jan. Poster.

2015

*Marshall, A, P Mele, L Phillips, A Longmore, C Tang, K Heidelberg. Temporal changes in the genetic capacity of the Port Phillip Bay sediment microbiome to remove nitrogen. Australian Marine Science Association (08/07/15)

*Lie, AAY, Liu, Z, Terrado, R, Heidelberg, KB, Caron, DA. Gene expression of a mixotrophic chrysophyte under different resource availability. USC Department of Biological Sciences Student Seminar. 2015 Feb. Talk.

†Aldus, J, †L. Wilson, WR Miller, A Jones, and KB Heidelberg. 2015. Morphological and Molecular characterization of Tardigrades on Catalina Island. Southern California Conference on Undergraduate Research – SCCUR. Harvey Mudd College, Claremont, CA. Nov 2015. Poster.

*Lie, AAY., Z Liu, R Terrado, KB Heidelberg, DA Caron. Gene expression of a mixotrophic chrysophyte under different resource availability. USC Department of Biology Seminar. 2015 Feb. (Talk).

Heidelberg, KB. 2015. Understanding Climate Change: Being Cool has Never Been so Hot. Climate Change and Policy Options Meeting. USC. Nov 7, 2015. Invited Talk.

22.


Heidelberg, KB. 2015. Effective Strategies for NSF REU Renewal: A Principal Investigator Brainstorming Session. Research Experiences for Undergraduates Symposium, Council on Undergraduate Research. Hilton, Arlington, VA October 25-26, 2015 Invited Talk.

Ginsburg, D and KB Heidelberg. 2015. Scientific diver training for undergraduates: Experimental Learning in Coastal Marine Science and Policy. American Academy of Underwater Sciences Scientific Diving Symposium, Key West, Florida. Talk.

2014

Kim, DY, RL Marinelli, and KB Heidelberg. 2014. REU programs at research field stations offer unique advantages that may enhance retention in STEM fields. American Geophysical Union, San Francisco, CA. Invited Talk.

Lie, AAY, Z Liu, R Terrado, KB Heidelberg, DA Caron. Gene expression of a mixotrophic nanoflagellate (Ochromonas, Chrysophyta) utilizing different nutritional modes. Joint International Society for Evolutionary Protisology and International Society of Protistologists Conference. Banff, Alberta, Canada. 2014 August. Poster.

Heidelberg, KB and D. Kim. USC Wrigley Institute for Environmental Studies REU Coastal Ocean Systems and Sustainability: Year 1 strengths. Research Experiences for Undergraduates (REU) PI Meeting, Boulder CO, April 2014. Poster.

Heidelberg, KB. 2014. Engaging undergraduates in field experiences to increase student retention in STEM fields. Arlington VA, March 2014 (Invited talk)

†Luu, C, A Lie, KB Heidelberg, ¶D Kim, D Caron. 2014. How changes in pH affect the physiology and photosynthetic growth of the single-celled golden-brown alga, Ochromonas. Council of Undergraduate Research (CUR) Annual Research Experiences for Undergraduates Symposium Oct 26-27, 2014, Arlington, VA (Poster)

†Luu, C, A Lie, KB Heidelberg, ¶D Kim, D Caron. How changes in pH affect the physiology and photosynthetic growth of Ochromonas. REU poster presentation. USC, Los Angeles, CA, USA. Aug 2014. Poster.

2013

Heidelberg, KB and ¶D Kim. 2013. University of Southern California Wrigley Institute for Environmental Studies 2013 Research Experiences for Undergraduates (REU) Coastal Ocean Systems and Sustainability. Council for Undergraduate Research (CUR) Meeting, Arlington, VA. Poster.

¶Kim, D and KB Heidelberg. 2013. University of Southern California Wrigley Institute for Environmental Studies. Research Experiences for Undergraduates (REU) Coastal Ocean Systems and Sustainability. 2013 SACNES National Conference. Poster.

Heidelberg KB, ¶D Kim and R. Marinelli. 2013. USC Wrigley Institute for Environmental Studies REU Coastal Ocean Systems and Sustainability: year 1 strengths. REU

23.


Geosciences PI Meeting. University Cooperation for Atmospheric Research (UCAR) Center. Boulder CO. Poster.

†Krebs, E, †A Gregath, †J Hoese, †K Kim, †D Su, †T Andes, †L But, †E Chug, †F Liang, †M Sullivan, †A Wen. KB Heidelberg, W Ziebis. 2013. Impact of human activity in Avalon Bay on Water quality off the coast of Catalina Island, CA. West Coast Biological Sciences Undergrad Research Symposium, Point Loma, CA. Mar 2013. Talk.

†Krebs, E, †A Gregath, †J Hoese, †K Kim, †D Su, †T Andes, †L But, †E Chug, †F Liang, †M Sullivan, †A Wen. KB Heidelberg, W Ziebis. 2013. USC Biological Sciences Undergrad Research Symposium, Los Angeles, CA. Mar 2013. Poster.

Holm, JB*, and KB Heidelberg. 2013. Oxygen Production in the Octocorals, Muricea californica and Muricea fruticosa: an Attribute of potential Photosynthetic Protistan Endosymbionts. USC Department of Biology, MEB. Talk.

†Bartholow, K, D Kim and KB Heidelberg. 2013. Investigating long-term environmental variability at the USC Wrigley San Pedro Ocean Time-series station in the eastern North Pacific. USC Wrigley Institute Undergrad Research Symposium, Los Angeles, CA. Poster.

Heidelberg, KB, Z Liu, *AE Koid, A Jones, and DA Caron. 2013. ICOP XIV Intnl. Congress of Protistology. Vancouver, BC, CA. Comparative functional analysis of the harmful algae Haptophyte, Prymnesium parvum. Invited talk.

Heidelberg, KB, Z Liu, *AE Koid, A Jones, and DA Caron. Society for Molecular Biology and Evolution. Chicago, IL. 06/2013. Comparative functional analysis of the harmful algae Haptophyte, Prymnesium parvum. Society for Molecular Biology and Evolution (SEMBE), Chicago, IL. Invited talk.

*Koid, AE. USC Department of Biology/MEB seminar, April 2013. Functional analysis of four prymnesiophyte transcriptomes. Talk.

†Wright, SC and KB Heidelberg. Aug 2013. Diel patterns of zooplankton diversity and abundance in Big Fisherman's Cove, Catalina Island, CA. Wrigley Institute Summer intern symposium. Poster.

†McNabb, NA, *JB Holm, †SC Wright, KB Heidelberg. Aug. 2013. Effects of temperature on the health and associated microbial communities of the Gorgonian corals of Southern California. Wrigley Institute Summer intern symposium. Poster.

Heidelberg, KB. 2013. Maryville College. Invited seminar: Genomics Enabled Studies of Microbial Ecology.

Heidelberg, KB. 2013. Maryville College. Invited seminar: Climate Change and Coral Reefs, Trouble in Paradise.

2012

24.


Kim, DS, W Berelson, D Capone, DA Caron, J Fuhrman, D Hammond, JF Heidelberg, KB Heidelberg, F Sun. Nov 2012. The USC San Pedro Ocean Time-series and Microbial Observatory. International Ocean Carbon Coordination Project (IOCCP) and the Ocean Carbon and Biochemistry Program (OCB) Time Series Workshop. Poster.

*Holm, J and KB Heidelberg. Microbial Consortia of temperate gorgonian corals. Int. Coral Reef Society, Cairns AUS, July 2012. Talk.

Heidelberg, KB, KP Sebens, JE Purcell. 2012. Effects of Water Flow and Prey Behavior on Coral Feeding. Int. Coral Reef Society Meeting, Cairns AUS, July 2012. Talk

Podell. S, JA Ugalde, P Narasingarao, JF Banfield, KB Heidelberg and EE Allen. 2012. Assembly-driven metagenomics of a hypersaline microbial ecosystem. Extremophyles, 9th Int. Congress. Sevilla Spaine. 9-13th September, 2012. Talk.

Emerson, JB, BC Thomas, K Andrade, KB Heidelberg, JF Banfield. Haloviral Diversity and Dynamics in Lake Tyrrell, Victoria, Australia. Viruses of Microbes Meeting. 2012. Talk.

Andrade, K, J Logemass, J Brocks, CS Miller, BC Thomas, KB Heidelberg, JF Banfield. Diel periodicity in aquatic hypersaline microbial communities in Lake Tyrrell, Victoria, Australia. Am. Soc. Microbiology. San Francisco, CA July 2012. Poster.

Emerson, JB, BC Thomas, K Andrade, KB Heidelberg, JF Banfield. Diversity and temporal dynamics of haloviral communities in Lake Tyrrell, Victoria, Australia. Am. Soc. Microbiology. San Francisco, CA July 2012. Poster.

*Koid AE, JF Heidelberg, and KB Heidelberg. 2012: Metagenomics of picoeukaryotes: A journey in bioinformatics. USC Symposium for the Cellular, Biochemical, and Molecular Sciences (CBM) NIH Training Grant. Talk.

Heidelberg, KB. 2012. USC Emeriti Center College and Skirball Cultural Center. Los Angeles, CA. State of the Oceans Great Decisions Seminar. (Invited)

2011

State Gov. Victoria AUS, Dept of Primary Industries, Science and Policy. 06/2011. Application of Metagenomics to Environmental Systems Research. Melbourne, AUS. Invited Talk.

Fisheries Victoria and Dept. of Primary Industries. Queenscliff, Victoria, AUS. 06/2011. The History of the Application of Metagenomics to Environmental Systems. DPI Visiting Fellow Seminar. Invited Talk.

Fisheries Victoria, Dept. of Primary Industries. Visiting Fellow Seminar. 06/2011. Queenscliff, Victoria, AUS. Approaches to evaluate the impacts of large-scale environmental change on key marine ecosystem community members. Invited Talk.

Fisheries Victoria, Dept. of Primary Industries. Visiting Fellow Seminar. 05/2011. Queenscliff, Victoria, AUS. Challenges of the applications of metagenomic approaches

25.


for studying microbial eukaryotes in the marine environment: Where are we now? Invited Talk.

State of Victoria, Dept of Primary Industries, Visiting Fellow Seminar. June 2011. Bundoora, Victoria, AUS. Microbial Metagenomics: Future Approaches Beyond the Genome. Invited Talk.

State of Victoria Dept. Primary Industries Headquarters. Gov Scientists and Policymakers.Visiting Fellow Seminar. 06/2011.The Application of Genomics and Molecular-Enabled Approaches for Environmental Studies in Port Phillip Bay, AUS. Invited Talk.

La Trobe University Melbourne, Victoria, AUS. The History of the Application of Metagenomics to Environmental Systems with specific reference to Australian soils. Invited Talk.

2010

NSF Ocean Carbon and Biogeochemistry (OCB) Program Scoping Workshop. 10/2010. The Molecular Biology of Biogeochemistry: Using molecular methods to link ocean chemistry with biological activity. Invited Plenary.

Heidelberg KB, T Stockwell, T Sawbridge, H Hayden, C Pfannkoch, M Lewis, P Mele. Microbial eukaryotic 18S rRNA diversity in Australian Soils: Soil geomorphology and land-use influence on community structure. ISME Meeting, Seattle, WA. Aug 2010. Poster.

*Koid, AE, JF Heidelberg, WC Nelson, KB Heidelberg. Next-generation sequencing of a protistan fosmid library. USC Department of Biology/MEB seminar, April 2010. Talk.

Mele, PM, B Methe, TI Sawbridge, T Stockwell, D Tanenbaum, D Rusch, C Pfannkoch, H Hayden, M Lewis, KB Heidelberg. Does 100 years of agriculture alter the soil microbial community – A pilot study of the metagenomics of an Australian arid zone soil. ISME Meeting, Seattle, WA. Aug 2010. Talk

*Koid, AE, DA Caron, JF Heidelberg and KB Heidelberg. 2010. Analysis of Novel Eukaryotic Picoplankton at the San Pedro Ocean Time Series Using a Fosmid Library. Int. Soc. Microb. Ecology Meeting. Seattle, WA. Poster

*Eisenkolb, N, JF Banfield, KB Heidelberg. Eukaryotic microbial diversity in a hypersaline lake and its variability with prokaryotic community shifts and environmental factors. ISME Meeting, Seattle, WA. Aug 2010. Poster

*Koid, AE, JF Heidelberg, DA Caron, KB Heidelberg. Analysis of Novel Eukaryotic Picoplankton within the Alveolates and Stramenopiles at the San Pedro Ocean Time Series Using a Fosmid Library. USC Biol. Depart. Graduate Program Symposium. May 2010. Los Angeles, CA. Poster.

26.


Ugalde, JA, P Narasingarao, S Podell1, TJ Hammer, KB Heidelberg, JF Banfield, EE Allen. Exploring the Genetic Heterogeneity of Microbial Populations Using Community Genomics. ASM May 2010. San Diego, CA. Poster.

Narasingarao, P, S Podell, J Ugalde, KB Heidelberg, JF Banfield, EE Allen. Metagenomic Assembly of Novel Archaeal Lineages from a Hypersaline System. ASM May 2010. San Diego, CA. Poster.

*Koid, AE, JF Heidelberg, DA Caron, KB Heidelberg. Analysis of Novel Eukaryotic Picoplankton within the Alveolates and Stramenopiles at the San Pedro Ocean Time Series Using a Fosmid Library. ASM May 2010. San Diego, CA. Poster

*Koid, AE. Protistan diversity at the San Pedro Ocean Time Series. 2010. USC Symposium for the Cellular, Biochemical, and Molecular Sciences (CBM) NIH Training Grant. Talk.

Caron, DA, LA Amaral-Zettler, KB Heidelberg, WC Nelson, SC Cary, RJ Gast, BF Sherr, EB Sherr, PD Countway. Global Protistan Diversity and Biogeography: Part I. Where are we today? 2010 Ocean Sciences Meeting. Portland, OR. Feb 2010. Talk.

Countway PD, LA Amaral-Zettler, KB Heidelberg, WC Nelson, SC Cary, RJ Gast, BF Sherr, EB Sherr, DA Caron, DA. Global Protistan Diversity and Biogeography: Part II. Insights from High-throughput Sequencing Approaches. 2010 Ocean Sciences Meeting, Portland, OR. Feb 2010 Talk.

2009

Heidelberg, KB. 2009. A focus on Microbial Eukaryotic Ecology in the Deep Ocean. Dark Energy Biosphere Institute Research Coordination Network Workshop, Hawaii. October 2009. Invited Talk.

Heidelebrg, KB. 2009. USC BISC/MEB Graduate Program Retreat. 10/2009. At the Intersection of Policy and Science. Talk.

2008†Schvarcz, CR, JF Heidelberg, KB Heidelberg. 2008. In situ analysis of photosynthetic

gene expression of the smallest known eukaryote, Ostreococcus spp. 2008 Ocean Sciences Meeting. Orlando, FL March 2-7, 2008. Invited Poster

Heidelberg, KB. Joint EC-US/CIESM Workshop on Marine Genomics: at the interface of marine microbial ecology and biotechnological Applications. 10/2008. Monaco. Invited Talk.

Heidelberg, KB, B Tully and WC Nelson, JF Heidelberg Int. Soc. Microbial Ecol. Cairns, AUS. 12/2008. Metagenomic Analysis of Planktonic Microbial Populations in the Gulf of Maine. Talk.

Heidelberg, KB UCSB, Biology Department. New frontiers in the study of marine microbial eukaryotic communities. Invited Talk.

27.


Heidelberg, KB. California State University Fullerton, Dept. Biology. New frontiers in the study of marine microbial communities. Invited Talk.

Mele, PM, Hayden H, Sawbridge T, Pfannkoch C, Lewis M, Heidelberg KB. 2008. Soil metagenomics; resolving microbial community diversity in highly contrasted soils and land-use in arable SE Australian landscapes. Int. Soc. Microbial Ecol. Cairns, AUS. Aug 17-22, 2008. Talk

Bonilla-Rosso, G, L Falcon, L Espinosa-Asuar, LE Eguiarte, A Castillo, AE Escalante, R Cerritos, V Molina, K Heidelberg, DB Rusch, JC Venter. 2008. Nitrogen cycle potential assessment in marine microbial community from the Yucatan channel and Sargasso through metagenomic analysis. 2008 Ocean Sciences Meeting. Orlando, FL March 2-7, 2008. Invited Talk.

†O’Neil K, KB Heidelberg, KP Sebens. July 2008. Diel patterns of abundance and vertical distribution of zooplankton over a Florida coral reef. 11th Int. Coral Reef Symp. Ft. Lauderdale, FL. July 7-11, 2008. Poster.

Mele, PM, H Hayden, K, T Sawbridge, K Heidelberg, C Pfannkoch. 2008. Unearthing the goods and services provided by Australian soil microbial communities utilizing a Sangar/Pyrosequencing hybrid approach. Bio 2008 International Convention, May 18-21, 2008. San Diego, CA. Poster.

Bonilla-Rosso, G, L Falcon, L Espinosa-Asuar, LE Eguiarte, A Castillo, AE Escalante, R Cerritos, V Molina, K Heidelberg, DB Rusch, JC Venter. Mar 2008. Nitrogen cycle potential assessment in marine microbial community from the Yucatan channel and Sargasso through metagenomic analysis. 2008 Ocean Sciences Meeting. Orlando, FL March 2-7, 2008. Talk.

2007

Professional Soil Scientists Association of California Annual Meeting. 04/2007. Environmental Genomics: Challenges of Environmental Metagenomic Applications for Soil Communities.

NSF Ocean Sciences Supported Centers of Excellence in Education (COSEE)-West Program and Long Beach Aquarium of the Pacific and teacher training development series. 02/2007. Coral Reefs: Trouble in Paradise. Invited Talk.

Univ. New South Wales Department of Biology, Sydney, Australia. 01/2007. New Frontiers: The Application of Genomics to Questions in Marine and Environmental Science. Invited Talk.

KB Heidelberg, Banfield J, E Allen. Comprehensive genomic analysis of salt-impacted microbial communities in their environmental context. NSF Microbial Genome Sequencing Program Awardee Workshop. San Diego, CA. Jan 2007. Poster

2006

28.


Heidelberg, KB. First Biannual Kiel Symposium: "The Future Ocean" Christian-Albrechts-Universität zu Kiel, Germany. Marine Genomics and the Future of Marine Science. Invited Plenary.

Heidelberg KB. California and the World Oceans Conference. New Frontiers: The Application of Genomics to Questions in Marine and Environmental Science. Invited Talk.

Frazier ME, DB Rusch, AL Halpern, KB Heidelberg, G Sutton, S Williamson, S Yooseph, D Wu, JA Eisen, J Hoffman, CH Howard, C Foote, BA Dill, K Remington, K Beeson, B Tran, H Smith, H Baden-Tillson, C Stewart, J Thorpe, J Freemen, C Pfannkoch, JE Venter, J Heidelberg, T Utterback, Y-H Rogers, S Zhang, V Bafna, L Falcon, V Souza, G Bonilla, LE Eguiarte, DM Karl, K Nealson, S Sathyendranath, T Platt, E Bermingham, V Gallardo, G Tamayo, R Friedman, R Strausberg, JC Venter. Exploring the Oceans Microbes: Sequencing the Seven Seas. 2006 LSS Computational Systems Bioinformatics Conference, Stanford Univ. CA. Invited Talk.

Bonilla-Rosso G, L Falcón, V Souza, L Eguiarte, A Castillo, A Escalante, L Espinosa-Asuar, R Cerritos, L Segovia, K Heidelberg, D Rusch, A Halpern, JC Venter. 2006. Análisis Metagenómico del Canal de Yucatán: Diversidad Microbiana y Ciclo del Nitrógeno. 1er Congreso Mexicano de Ecología. 11/2006. Talk.

Bonilla-Rosso G, L Falcón, V Souza, L Eguiarte, A Castillo, A Escalante, L Espinosa-Asuar, R Cerritos, L Segovia, K Heidelberg, D Rusch, A Halpern, JC Venter. Ocean Metagenomics in the Yucatan Channel: Microbial Diversity and Nitrogen Cycle Analysis 14th Annual International Meeting on Microbial Genomics. Lake Arrowhead, CA.; 09/2006, Poster.

Ferriera S, J Johnson, KB Heidelberg, K Yadvish-Beeson, D Busam, B Tran, Y-H Rogers, R Friedman, M Frazier, S Kravitz, and JC Venter. Progress Report on the Gordon and Betty Moore Foundation Marine Microbial Genome Sequencing Project. Am. Soc. Limnology and Oceanography Meeting, Hawaii. (presented by KBH) Feb 2006. Poster

Williamson, SJ, DB Rusch, S Yooseph, A Halpern, K Heidelberg, C Pfannkoch, K Remington, R Friedman, M Frazier, R Strausberg, JC Venter. 2006. Understanding Phage-Host Interactions Using Synergistic Metagenomic Approaches. DOE Genomics: Genomes to Life Contractor-Grantee Workshop IV. Bethesda, Maryland. Feb 2006. Talk

Sebens KP, K O’Neil*, KB Heidelberg. Vertical Distribution and Diel Patterns of Zooplankton over a Florida Coral Reef. AGU Ocean Sciences Meeting Honolulu, HI. Feb 2006. Talk

Heidelberg, KB, KP Sebens, JE Purcell. Effects of Zooplankton Prey Behavior and Water Flow on the Scleractinian Coral, Meandrina meandrites Feeding. 8th Int. Coral Reef Symposium. Panama. 02/2006. Talk

< 2006

29.


Heidelberg KB, WC Nelson, JF Heidelberg. 2005. Comparative genomics of whole environmental shotgun assemblies and BAC-Closure derived SAR86 sequence. Am. Soc. Limnology and Oceanography Meeting, Santiago Spain. Feb 2005. Talk

Heidelberg, KB. 2003. Overview of the Sorcerer II Global Oceans Sampling Expedition. Partnership for the Observation of the Global Oceans (POGO-5). Yokohama Japan.

Heidelberg, KB. White Water to Blue Water: A Global Oceans Initiative. Coastal Zone 2003 Meeting. Baltimore MD. 07/2003.

Heidelberg, KB. Coastal Zone 2003 Meeting. Baltimore, MD. 07/2003. International Corporate Wetlands Restoration Program: A Model for Building International Partnerships.

Heidelberg, KB. World Water Forum. 2003. Kyoto, Japan. Towards Integrated Watershed Management.

Heidelberg KB, G Olsen. International Corporate Wetlands Restoration Program: A Model for Building International Partnerships. Coastal Zone 03 Meeting. Baltimore, MD. Jul 2003 Talk

Heidelberg, KB, KP Sebens, JE Purcell. 2001. Temporal Patterns, Abundance and Composition of Near-reef Zooplankton on a Jamaican Coral Fore-Reef. Wednesday, ASLO Annual Meeting Albuquerque, NM. February 2001. Talk

Heidelberg, KB. University of Newcastle Upon Tyne, Newcastle, England. 2000. Effects of Zooplankton Prey Behavior on Coral Feeding Success.

Heidelberg, KB, Sebens KP, Purcell JE. A model of coral heterotrophy based on prey behavior, coral morphology and water flow. Am. Soc. Limnol. and Oceanogr., Santa Fe, NM. Feb 1999. Talk

Heidelberg KB, KP Sebens, JE Purcell. 1999. A Model of Coral Heterotrophy Based on Prey Behavior, Coral Morphology and Water Flow. ASLO Meeting, Santa Fe, NM. Talk

Heidelberg, KB, KP Sebens, JE Purcell. The Effects of Zooplankton Prey Behavior and Water Flow on Coral Feeding Success. San Diego, CA. Feb 1998. Talk

Heidelberg KB, JE Purcell and KP Sebens. Effects of fine scale turbulence on zooplankton escape abilities. International Conference on Zooplankton Behavior and Sensory Biology. Honolulu, HA. Jan 1995. Talk

PUBLISHED ABSTRACTS

2018 (n=6) 2017 (n=9); 2016 (n=11); 2015 (n=12); 2014 (n= 10); 2013 (n=12); 2012 (n=12); 2011 (n=1); 2010 (n=9); 2009 (n=7); 2008 (n=3); 2006 (n=4); <2006 (n=7)

SIGNIFICANT FIELD WORK AND OCEANOGRAPHIC CRUISE PARTICIPATION

30.


2007, 2009, 2010, 2011 (~18 days each). Field Seasons, Lake Tyrrell, Victoria, AUS2008 (28 days) R/V Atlantis with DSV Alvin. Extremophile Deep Sea Cruise. NSF

Collaborative Research: Protistan Abundance, Diversity and community assemblage associated with hydrothermal vent communities, Guyamas and East Pacific Rise.

2008 (53 days) R/V Nathaniel B Palmer Antarctica cruise. NSF Collaborative Research: Crustacean Zooplankton Roles in Structuring Heterotrophic Plankton Communities.

2007 (26 days) R/V Atlantis with DSV Alvin. Extremophyle Deep Sea Cruise. NSF Collaborative Research: Protistan Abundance, Diversity and community assemblage associated with hydrothermal vent communities, Guaymas and East Pacific Rise.

2006 (14 days) R/V Albatross. NOAA ECOMON Gulf of Maine. Evaluation of microbial and zooplankton community assemblage and teacher training.

2003, 2004 (14 days each), Bermuda Biological Station for Research. JCVI Sargasso Sea Environmental Genomics Microbial Project

1998, 1999, 2000 (30 days each) NOAA/NURC Aquarius Underwater facility, Key Largo, FL. (2000 Chief Scientist).

1996 (30 days) Smithsonian Institution Research Station Carry Bow Key facilities, Belize 2002 (14 days) R/V Oceanus. Bermuda to Woods Hole Cruise, focus on gelatinous zoopl. 1992-1996 (1 month/yr) Discovery Bay Lab, Jamaica. Focus on coral nutrition and growth.1992-2001 4-7 day cruises R/V Aquarius. Focus on gelatinous zooplankton in Chesapeake

Bay.

PROFESSIONAL TRAINING

2016 Howard Hughes and National Academies STEM Training Workshop, Olympia WA2014-2015 Participation in several USC Center for Excellence in Teaching Workshops 2014 Council for Undergraduate Research (CUR) meeting. Teaching ethics in the undergraduate science curriculum, Arlington VA. 2009 DOE, Joint Genome Institute Training -Introduction to Integrated Microbial Genomes (IMG) system -Synteny tools and gene context analysis in Integrated Microbial Genomes2009 Science/AAAS Webinar. Effective lab skills: managing people, projects and money.

Dec 2009

31.

PHS 398 (Rev. 11/07), Biographical Sketch Format … · Web viewMetagenomic Assembly of Novel...

Documents

Transcript of PHS 398 (Rev. 11/07), Biographical Sketch Format … · Web viewMetagenomic Assembly of Novel...