Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition...
-
Upload
ralph-bryan -
Category
Documents
-
view
229 -
download
0
Transcript of Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition...
![Page 1: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/1.jpg)
parts.mit.edu
iGEM & Synthetic iGEM & Synthetic BiologyBiology
International Genetically Engineered International Genetically Engineered Machine CompetitionMachine Competition
Randy RettbergRandy Rettbergigem2007.com
parts.mit.eduparts.mit.edu
SB 3.0 Zurich6/24/07
![Page 2: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/2.jpg)
parts.mit.edu
An Engineering Question
Can simple biological systems be built from standard, interchangable parts and operated in living cells?
Or, is biology so complex that each case is unique?
![Page 3: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/3.jpg)
parts.mit.edu
Education Driving Research
![Page 4: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/4.jpg)
parts.mit.edu
International Genetically Engineered Machine Competition 2005
−13 SchoolsCaltech MIT UC BerkeleyCambridge, UK Oklahoma UCSFDavidson Penn State UT AustinETH, Zurich PrincetonHarvard Toronto, Canada
−Sponsored by Microsoft/MIT iCampus
![Page 5: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/5.jpg)
parts.mit.edu
iGEM 2006
• 40 Schools, 33 Teams • 450 participants
• Europe, Canada, Asia, Latin America, US• Some EU funding in place
• iGEM ambassadors for US, Asia, and Europe
• Jamboree November 4 & 5• www.iGEM2006.com• Supported by Microsoft
Research and iCampus
![Page 6: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/6.jpg)
parts.mit.edu
Ege University, Turkey
iGEM 2006
![Page 7: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/7.jpg)
parts.mit.edu
www.iGEM2006.com
![Page 8: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/8.jpg)
parts.mit.edu
Meet the Teams
![Page 9: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/9.jpg)
parts.mit.edu
Valencia iGEM Site iGEM Site
![Page 10: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/10.jpg)
parts.mit.edu
iGEM 2006 Results
![Page 11: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/11.jpg)
parts.mit.edu
Sample iGEM Projects
Berkeley Controlled Communications Davidson Flipping DNA Harvard DNA Boxes ETH Zurich Pattern MatchingLjubljana Controlling Sepsis Chiba JapanLight-Directed Chemotaxis Mississippi Hydrogen Gas Detector MIT Banana and Wintergreen Smells Edinburgh Arsenic Detector
![Page 12: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/12.jpg)
parts.mit.edu
MIT iGEM 2006
eau d’e coli
mit igem 2006
![Page 13: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/13.jpg)
The field test device
A test tube could contain all the necessarycomponents: Freeze dried bacteria, growth
medium,indicator powder, Ampicillin salt, etc…•These tubes could then be
given to local villagers to monitor their own water quality themselves
•A good alternative to the widely used Gutzeit method
www.Macteria.co.uk
![Page 14: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/14.jpg)
parts.mit.edu
Some Engineering Answers
Can simple biological systems be built from standard, interchangable parts and operated in living cells?
- YES, SOMETIMES
Or, is biology so complex that each case is unique?
- NOT ALWAYS
![Page 15: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/15.jpg)
parts.mit.edu
www.igem2007.com
![Page 16: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/16.jpg)
parts.mit.edu
Financial Resources
Small Sample:$20K 8$30K 8$40K 1$50K 4>$50K 2
![Page 17: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/17.jpg)
parts.mit.edu
• 2008: 100 Schools -> Partition?
• Geographic Competitions
• Tracts• Health and Medicine• Energy and the Environment• Parts and Devices• Fun and Games• Sensors• Other
iGEM 2007 and Beyond
![Page 18: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/18.jpg)
parts.mit.edu
The Impact of iGEM
• Students• Making future synthetic biologists• Teaching graceful competition
• Instructors• Opportunities for junior faculty• New programs - new ideas• A task worth the effort
• Schools• Synthetic biology entering curriculum• Energize research programs
• Synthetic Biology• Examples, parts, successes, testamonials
![Page 19: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/19.jpg)
parts.mit.edu
Registry of Standard Biological Parts
An industry based on standard parts requires catalogues and suppliers of those parts.
![Page 20: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/20.jpg)
parts.mit.edu
http://parts.mit.edu
Registry Registry Parts Catalog
![Page 21: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/21.jpg)
parts.mit.edu
Registry Contents 7/2007
• Promoters
• Protein Coding
• Reporters
• RNA
• Terminators
• Signaling
• Many project parts
1400 Parts Available as DNA
![Page 22: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/22.jpg)
parts.mit.edu
Constitutive Promoters - Berkeley
Part Characterization
![Page 23: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/23.jpg)
parts.mit.edu
DNA Repository
![Page 24: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/24.jpg)
parts.mit.edu
DNA Repository
• All parts sent to teams• Parts are from previous teams
![Page 25: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/25.jpg)
parts.mit.edu
Robotic Assembly
![Page 26: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/26.jpg)
parts.mit.edu
DNA Synthesis Offer
GENEART synthetic DNA offer for iGEM teams
• All you want at $0.70 per base• 100,000 bases total at $0.25 per base• About 2000 bases per team for $500• GENEART is a primary sponsor of iGEM 2007
http://www.geneart.com/index.php?id=252
![Page 27: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/27.jpg)
parts.mit.edu
New Programs
• BioBrick Part Program• iGEM in Europe• Registry in Europe• New Registry Workshop• Standards Workshop• iGEM Steering Committee
![Page 28: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/28.jpg)
parts.mit.edu
Standards
Device Families• Protein : DNA logic• Post-translational control• RNA-based control• Localization
Measurement• Input and Outputs
(PoPS - Polymerase Per Second)• Genetic stability• Cross-lab consistency
Operating Environment• Load on the cell• Environmental impact on performance• Models
![Page 29: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/29.jpg)
parts.mit.edu
Sponsors
• National Science Foundation
• SynBERC
• CSBi
• GENEART
• Microsoft Research
• Biological Engineering - MIT
![Page 30: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/30.jpg)
parts.mit.edu
Teachers Workshops
• MIT May 26th
• China June 16-17• Zurich June 27th
• Hands-on training• Future instructors welcome
![Page 31: Parts.mit.edu iGEM & Synthetic Biology International Genetically Engineered Machine Competition Randy Rettberg igem2007.comparts.mit.edu SB 3.0 Zurich.](https://reader036.fdocuments.us/reader036/viewer/2022081503/56649da05503460f94a8bbb3/html5/thumbnails/31.jpg)
parts.mit.edu
How can I participate?
• Organize a team for 2008• Volunteer for the BioBrick parts program.• Join the Awards committee• Be a judge• Have your lab join the Registry• Contribute parts to the Registry• Use BioBrick part standards• Help raise money for teams and
ambassadors in your area.• Join iGEM committees (see the wiki)• Join iGEM in Europe