ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID
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Transcript of ORCID participant meeting May 2011: The digital scholar, identity on the Web and ORCID
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
The digital scholar, identityon the Web and ORCID
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Gudmundur A. Thorisson <[email protected]> Tony Brookes bioinformatics group
Departments of GeneticsUniversity of Leicester
-- Outline --• How did I get sucked into this stuff?
• Ongoing/planned genetic researcher data pub. projects w/ ORCID component
• How might ORCID fit into the broader online identity landscape?
This work can be freely copied, redistributed and adapted, as long as proper attribution is given
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Prologue
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Prof Anthony J Brookes GEN2PHEN coordinatorChair, Bioinformatics and GenomicsDepartment of GeneticsUniversity of Leicester, UK
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
The data sharing problem
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Lack of incentives for sharing
• Effort required to prepare, package and submit datasets to public repositories
• Time better spent writing papers & grants
• All sticks (funders, journals) - no carrots
• Need incentives - treat data as publications, credit creators
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“[...] Many of the issues regarding data availability can be addressed if the principles of “publication” rather than “sharing” are applied. However, online data publication systems also need to develop mechanisms for data citation and indices of data access comparable to those for citation systems in print journals”
Costello, M. Motivating Online Publication of Data. BioScience (2009) vol. 59 (5) pp. 418-427
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
ORCID
F67572010
?
ORCID ID: B-1242-2010G. Thorisson, Univ. LeicesterG. A. Thorisson, Univ. LeicesterG. A. Thorisson, Cold Spring Harbor Lab.
ORCID ID: G-1442-2009J. Smith, Univ. North Pole
ORCID ID: D-2400-2010J. Smith, Luthor Corporation
Name ambiguity => attribution challenges
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Projects
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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1. Diagnostic laboratories
2. Central ‘clearinghouse’
3. End-users (e.g. LSDB curators)
Publish data Retrieve Atom feeds
Submi&ng muta,ons from diagnos,c labs using “Café RouGE enabled” so<ware via simple bu@on click
Data are shared with diverse 3rd par,es via manual retrieval or automated feed-‐based monitoring/retrieval
Cafe Variome - facilitating exchange of genetic data
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Cafe Variome - facilitating exchange of genetic data
dbSNP (coding)UniProt
PhenCode
Submission from diag. lab
Metadata describing varia,on data published elsewhere
Data shared with diverse 3rd par,es and data usage/cita,on tracked via DOI
✔
×
DOI assigned to incoming data upload
Already stable IDs so no DOI assignedA@ribu,on given to data submi@ers
via ORCID unique iden,fier
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
11
Cafe Variome - facilitating exchange of genetic data
dbSNP (coding)UniProt
PhenCode
Submission from diag. lab
Metadata describing varia,on data published elsewhere
Data shared with diverse 3rd par,es and data usage/cita,on tracked via DOI
✔
×
DOI assigned to incoming data upload
Already stable IDs so no DOI assignedA@ribu,on given to data submi@ers
via ORCID unique iden,fier
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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G. Thorisson, Univ. [email protected]
ORCID ID: A-883-2010
4x variants in BRCA2gene in patient X
Publication credit for Cafe Variome deposits
CV user has linked his user account with his ORCID profile
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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G. Thorisson, Univ. [email protected]
ORCID ID: A-883-2010
4x variants in BRCA2gene in patient X
G. A. Thorisson (A-883-2010). 4x variants in BRCA2 gene. Published online via Cafe Variome. 21 January (2011) doi:10.1255/caferouge.BRCA2-2352354
=> http://api.caferouge.org/atomserver/v1/caferouge/mutations/2352354
Publication credit for Cafe Variome deposits
CV user has linked his user account with his ORCID profile
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
GWAS nanopublications• Foray into semantic publishing
– GWAS Central as ‘nano-publisher’
– variant<->disease assertion as nanopub
rs19243 <associatedWith> Type II diabetes + condition & provenance
• Provenance part to include:– Contributors IDs
– Contributor roles:
• Author(s) on original GWAS paper
• Curator
• Registrant
• Citability: register DOI for nanopub?
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
ORCID collaborative development
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
ORCID collaborative development
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Online identity and attribution
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Key ORCID use case: submitting manuscript to journal
Attribution link deposited into ORCID:
A-883-2010 <created> 10.4259/psycho-review.gbilder2010.Foobar
Bilder, G. Foobar (A-883-2010) study of cracked pots in Uruguy. Psychoceramics Review. Published online May 23 2010. doi:10.4259/psycho-review.gbilder2010.Foobar
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
• But, there’s lots more ways of contributing to science
• I want be acknowledged for ....
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
... my data publications in Dryad and other public repos
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
.. my nanopublications
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!" #"$%%&'()*" +"
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
.. my nanopublications
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!" #"$%%&'()*" +"
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
... my Taverna analytical workflows and other digital research objects published on myExperiment
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
... my Wikipedia contributions
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
... my contributions to open-source software projects
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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• etc. etc. etc.
• In short, ‘I wanna’ aggregate all those contributions and showcase me as a ‘digital scholar’
Challenge: Identity fragmentation
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
How do I link all those different sub-identities together that matter to me professionally?
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Technologically, this is not rocket science
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Technologically, this is not rocket science
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
Single sign-on with social IDs
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
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What’s love ORCID gotta do with it?An online identity for the digital scholar,
centred on contributor ID?
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Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
28
What’s love ORCID gotta do with it?An online identity for the digital scholar,
centred on contributor ID?
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ORCID ID: B-1242-2010G. Thorisson, Univ. LeicesterG. A. Thorisson, Univ. LeicesterG. A. Thorisson, Cold Spring Harbor Lab.
http://mummi.myopenid.com
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
29
Wednesday, 18 May 2011
ORCID Participant Meeting, Harvard 18 May 2011
http://www.orcid.org G. A. Thorisson, University of Leicester
30
GEN2PHEN Consortiumhttp://www.gen2phen.org/about-gen2phen/partners
Prof Anthony J. Brookes Bioinformatics Group
This work has received funding from the European Community's Seventh Framework Programme (FP7/2007-2013)under grant agreement number 200754 - the GEN2PHEN project.
Acknowledgements
Contact me! Gudmundur ‘Mummi’ Thorisson
<[email protected]> |<[email protected]>http://friendfeed.com/mummi
http://www.linkedin.com/in/mummihttp://www.twitter.com/gthorisson
Wednesday, 18 May 2011