New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria...

13
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 http://dx.doi.org/10.4014/jmb.1107.07047 First published online January 5, 2012 pISSN 1017-7825 eISSN 1738-8872 Fig. S1. Phylogenetic relationships among 350 asparginase proteins. An unrooted phylogenetic tree was calculated based on an MSA (described in Material and Methods). Main cellular divisions are indicated. The numbers at the nodes are percentages that indicate the levels of bootstrap support, based on 1,000 resample data sets. Only values 70% were considered.

Transcript of New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria...

Page 1: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Fig. S1. Phylogenetic relationships among 350 asparginase proteins. An unrooted phylogenetic tree was calculated based on an MSA (described in Material and Methods). Main cellular divisions are indicated. The numbers at

the nodes are percentages that indicate the levels of bootstrap support, based on 1,000 resample data sets. Only values ≥70% were considered.

Page 2: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Distribution of type II L-asparaginases.

Division Subdivision Total of asparaginases Percentage

Actinobacteria 130 34.41

Proteobacteria Alphaproteobacteria 100 26.88

Betaproteobacteria 24 6.45

Deltaproteobacteria 3 0.81

Gammaproteobacteria 3 0.81

Cyanobacteria 38 10.48

Firmicutes Clostridia 13 3.49

Paenibacillus 10 2.69

Alicyclobacillus 2 0.54

Bacillales 2 0.54

Brevibacillus 2 0.54

Thermaerobacter 2 0.54

Carboxydothermus 1 0.27

Geobacillus 1 0.27

Halothermothrix 1 0.27

Heliobacterium 1 0.27

Lysinibacillus 1 0.27

Natranaerobius 1 0.27

Negativicutes 1 0.27

Deinococcus-thermus 10 2.69

Spirochaetes 2 0.54

Chlamydiae 1 0.27

Gemmatimonadetes 1 0.27

Green nonsulfur 1 0.27

Environment sample 4 1.08

Eukarya Ascomycetes 13 3.49

Cercozoa 1 0.27

Eudicots 2 0.54

Mosses 2 0.54

Division Subdivision Organism ID

Eukarya Ascomycetes Aspergillus flavus NRRL3357 238506591

Eukarya Ascomycetes Aspergillus fumigatus A1163 159127448

Eukarya Ascomycetes Aspergillus fumigatus Af293 70999426

Eukarya Ascomycetes Aspergillus nidulans FGSC A4 67904416

Eukarya Ascomycetes Aspergillus niger CBS 513.88 145231238

Page 3: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Eukarya Ascomycetes Aspergillus oryzae 83775992

Eukarya Ascomycetes Aspergillus oryzae RIB40 317158778

Eukarya Ascomycetes Gibberella zeae PH-1 46136617

Eukarya Ascomycetes Nectria haematococca mpVI 77-13-4 302895513

Eukarya Ascomycetes Neosartorya fischeri NRRL 181 119491510

Eukarya Cercozoa Paulinella chromatophora 194477260

Eukarya Ascomycetes Penicillium chrysogenum Wisconsin 54-1255 255941370

Eukarya Mosses Physcomitrella patens subsp. patens 168069789

Eukarya Mosses Physcomitrella patens subsp. patens 168070707

Eukarya Eudicots Ricinus communis 255604380

Eukarya Eudicots Ricinus communis 255604382

Eukarya Ascomycetes Talaromyces stipitatus ATCC 10500 242804081

Eukarya Ascomycetes Verticillium albo-atrum VaMs.102 302410363

Firmicutes Clostridia Acetivibrio cellulolyticus CD2 303240441

Firmicutes Alicyclobacillus Alicyclobacillus acidocaldarius LAA1 218289277

Firmicutes Alicyclobacillus Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 258512825

Firmicutes Bacillales Bacillus sp. 2 A 57 CT2 319652321

Firmicutes Bacillales Bacillus sp. B14905 126650948

Firmicutes Brevibacillus Brevibacillus brevis NBRC 100599 226311347

Firmicutes Brevibacillus Brevibacillus brevis NBRC 100599 226314167

Firmicutes Carboxydothermus Carboxydothermus hydrogenoformans Z-2901 78043850

Firmicutes Clostridia Clostridium cellulovorans 743B 302873329

Firmicutes Clostridia Clostridium cellulovorans 743B 302873330

Firmicutes Clostridia Clostridium kluyveri DSM 555 153953656

Firmicutes Clostridia Clostridium sp. D5 325263516

Firmicutes Clostridia Clostridium sp. L2-50 160895093

Firmicutes Clostridia Clostridium sticklandii DSM 519 310658069

Firmicutes Clostridia Coprococcus eutactus ATCC 27759 163815678

Firmicutes Clostridia Coprococcus sp. ART55 295093541

Firmicutes Clostridia Coprothermobacter proteolyticus DSM 5265 206896230

Firmicutes Clostridia Desulfotomaculum reducens MI-1 134299199

Firmicutes Clostridia Dethiobacter alkaliphilus AHT 1 225174478

Firmicutes Geobacillus Geobacillus sp. G11MC16 196250668

Firmicutes Halothermothrix Halothermothrix orenii H 168 220931024

Firmicutes Heliobacterium Heliobacterium modesticaldum Ice1 167629794

Firmicutes Lysinibacillus Lysinibacillus fusiformis ZC1 299535011

Page 4: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Firmicutes Negativicutes Megamonas hypermegale ART12 291532430

Firmicutes Natranaerobius Natranaerobius thermophilus JW 188584952

Firmicutes Paenibacillus Paenibacillus curdlanolyticus YK9 304406104

Firmicutes Paenibacillus Paenibacillus larvae subsp. larvae B-3650 322384345

Firmicutes Paenibacillus Paenibacillus larvae subsp. larvae BRL-230010 167462814

Firmicutes Paenibacillus Paenibacillus sp. HGF5 329925748

Firmicutes Paenibacillus Paenibacillus sp. HGF5 329928575

Firmicutes Paenibacillus Paenibacillus sp. oral taxon 786 str. D14 253577384

Firmicutes Paenibacillus Paenibacillus sp. Y412MC10 261407733

Firmicutes Paenibacillus Paenibacillus sp. Y412MC10 261409319

Firmicutes Paenibacillus Paenibacillus vortex V453 315647849

Firmicutes Paenibacillus Paenibacillus vortex V453 315649474

Firmicutes Clostridia Peptoniphilus duerdenii ATCC BAA-1640 304438752

Firmicutes Thermaerobacter Thermaerobacter marianensis DSM 12885 317121113

Firmicutes Thermaerobacter Thermaerobacter subterraneus DSM 13965 313903541

Actinobacteria Actinomyces urogenitalis DSM 15434 227497609

Actinobacteria Actinosynnema mirum DSM 43827 256375702

Actinobacteria Aeromicrobium marinum DSM 15272 311744325

Actinobacteria Amycolatopsis mediterranei U32 300784065

Actinobacteria Amycolatopsis mediterranei U32 300790822

Actinobacteria Arthrobacter arilaitensis Re117 308178622

Actinobacteria Arthrobacter aurescens TC1 119961188

Actinobacteria Arthrobacter aurescens TC1 119961755

Actinobacteria Arthrobacter chlorophenolicus A6 220913930

Actinobacteria Arthrobacter chlorophenolicus A6 220914491

Actinobacteria Arthrobacter phenanthrenivorans Sphe3 325964661

Actinobacteria Arthrobacter phenanthrenivorans Sphe3 325965120

Actinobacteria Arthrobacter sp. FB24 116671950

Actinobacteria Arthrobacter sp. FB24 116672517

Actinobacteria Beutenbergia cavernae DSM 12333 229821888

Actinobacteria Brevibacterium linens BL2 260903924

Actinobacteria Brevibacterium mcbrellneri ATCC 49030 295395678

Actinobacteria Catenulispora acidiphila DSM 44928 256397338

Actinobacteria Cellulomonas flavigena DSM 20109 296130915

Actinobacteria Clavibacter michiganensis subsp. michiganensis NCPPB 382 148273348

Page 5: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Actinobacteria Clavibacter michiganensis subsp. sepedonicus 170782542

Actinobacteria Corynebacterium glutamicum R 145296908

Actinobacteria Dermacoccus sp. Ellin185 309812570

Actinobacteria Frankia alni ACN14a 111220200

Actinobacteria Frankia sp. CcI3 86739054

Actinobacteria Frankia sp. EAN1pec 158318211

Actinobacteria Frankia sp. EUN1f 288918101

Actinobacteria Geodermatophilus obscurus DSM 43160 284992988

Actinobacteria Intrasporangium calvum DSM 43043 317126049

Actinobacteria Janibacter sp. HTCC2649 84498441

Actinobacteria Jonesia denitrificans DSM 20603 256832386

Actinobacteria Kineococcus radiotolerans SRS30216 152964081

Actinobacteria Kitasatospora setae KM-6054 311897750

Actinobacteria Kocuria rhizophila DC2201 184200073

Actinobacteria Kribbella flavida DSM 17836 284028970

Actinobacteria Kribbella flavida DSM 17836 284030253

Actinobacteria Kytococcus sed-eentarius DSM 20547 256824242

Actinobacteria Leifsonia xyli subsp. xyli str. CTCB07 50954874

Actinobacteria Marine actinobacterium PHSC20C1 88855346

Actinobacteria Microbacterium testaceum StLB037 323356852

Actinobacteria Micrococcus luteus NCTC 2665 239918336

Actinobacteria Micrococcus luteus SK58 289704665

Actinobacteria Microcystis aeruginosa NIES-843 166363295

Actinobacteria Microcystis aeruginosa PCC 7806 159026061

Actinobacteria Micromonospora aurantiaca ATCC 27029 302870148

Actinobacteria Micromonospora sp. ATCC 39149 238061303

Actinobacteria Micromonospora sp. L5 315503575

Actinobacteria Nakamurella multipartita DSM 44233 258651536

Actinobacteria Nakamurella multipartita DSM 44233 258655144

Actinobacteria Nocardia farcinica IFM 10152 54022548

Actinobacteria Nocardioidaceae bacterium Broad-1 326332009

Actinobacteria Nocardioidaceae bacterium Broad-1 326332373

Actinobacteria Nocardioides sp. JS614 119718423

Actinobacteria Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 297559414

Actinobacteria Pseudonocardia sp. P1 324999719

Actinobacteria Renibacterium salmoninarum ATCC 33209 163840601

Page 6: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Actinobacteria Rhodococcus equi 103S 312138306

Actinobacteria Rhodococcus equi ATCC 33707 325674776

Actinobacteria Rhodococcus erythropolis PR4 226308309

Actinobacteria Rhodococcus jostii RHA1 111021814

Actinobacteria Rhodococcus opacus B4 226364336

Actinobacteria Rothia dentocariosa ATCC 17931 311112177

Actinobacteria Rothia dentocariosa M567 300742261

Actinobacteria Rothia mucilaginosa ATCC 25296 255326689

Actinobacteria Rothia mucilaginosa DY-18 283457373

Actinobacteria Rubrobacter xylanophilus DSM 9941 108803916

Actinobacteria Saccharomonospora viridis DSM 43017 257057716

Actinobacteria Saccharopolyspora erythraea NRRL 2338 134101679

Actinobacteria Saccharopolyspora erythraea NRRL 2338 134103539

Actinobacteria Saccharopolyspora erythraea NRRL 2338 291003151

Actinobacteria Salinispora arenicola CNS-205 159036045

Actinobacteria Salinispora tropica CNB-440 145592881

Actinobacteria Stackebrandtia nassauensis DSM 44728 291303565

Actinobacteria Streptomyces albus J1074 239980443

Actinobacteria Streptomyces avermitilis MA-4680 29827857

Actinobacteria Streptomyces avermitilis MA-4680 29830568

Actinobacteria Streptomyces bingchenggensis BCW-1 297162188

Actinobacteria Streptomyces cf. griseus XylebKG-1 326778403

Actinobacteria Streptomyces clavuligerus ATCC 27064 254388555

Actinobacteria Streptomyces coelicolor A3(2) 21222582

Actinobacteria Streptomyces flavogriseus ATCC 33331 320009446

Actinobacteria Streptomyces ghanaensis ATCC 14672 239930424

Actinobacteria Streptomyces griseoaurantiacus M045 329941805

Actinobacteria Streptomyces griseoflavus Tu4000 302557056

Actinobacteria Streptomyces griseus subsp. griseus NBRC 13350 182437768

Actinobacteria Streptomyces hygroscopicus ATCC 53653 302540620

Actinobacteria Streptomyces lividans TK24 256786347

Actinobacteria Streptomyces pristinaespiralis ATCC 25486 297193549

Actinobacteria Streptomyces roseosporus NRRL 15998 239942374

Actinobacteria Streptomyces scabiei 87.22 290962651

Actinobacteria Streptomyces sp. AA4 302525305

Page 7: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Actinobacteria Streptomyces sp. AA4 302531019

Actinobacteria Streptomyces sp. ACTE 282860451

Actinobacteria Streptomyces sp. C 302532611

Actinobacteria Streptomyces sp. SA3 actG 318059668

Actinobacteria Streptomyces sp. SPB74 295837498

Actinobacteria Streptomyces sp. SPB78 302520801

Actinobacteria Streptomyces sviceus ATCC 29083 297197644

Actinobacteria Streptomyces thermoluteus subsp. fuscus 311692183

Actinobacteria Streptomyces violaceusniger Tu 4113 307325565

Actinobacteria Streptomyces viridochromogenes DSM 40736 302549289

Actinobacteria Streptosporangium roseum DSM 43021 271962474

Actinobacteria Streptosporangium roseum DSM 43021 271967569

Actinobacteria Synechococcus elongatus PCC 6301 56751349

Actinobacteria Synechococcus sp. BL107 116070927

Actinobacteria Synechococcus sp. CB0101 318041821

Actinobacteria Synechococcus sp. CB0205 317970256

Actinobacteria Synechococcus sp. CC9311 113953369

Actinobacteria Synechococcus sp. CC9605 78213336

Actinobacteria Synechococcus sp. CC9902 78184415

Actinobacteria Synechococcus sp. JA-2-3B'a(2-13) 86608517

Actinobacteria Synechococcus sp. JA-3-3Ab 86605633

Actinobacteria Synechococcus sp. PCC 7002 170077710

Actinobacteria Synechococcus sp. PCC 7335 254423377

Actinobacteria Synechococcus sp. RCC307 148242083

Actinobacteria Synechococcus sp. RS9916 116072932

Actinobacteria Synechococcus sp. RS9917 87125674

Actinobacteria Synechococcus sp. WH 5701 87303377

Actinobacteria Synechococcus sp. WH 7803 148239761

Actinobacteria Synechococcus sp. WH 7805 88808798

Actinobacteria Synechococcus sp. WH 8102 33865368

Actinobacteria Synechococcus sp. WH 8109 260435365

Actinobacteria Synechocystis sp. PCC 6803 16331826

Actinobacteria Thermobispora bispora DSM 43833 296268471

Actinobacteria Thermomonospora curvata DSM 43183 269124922

Page 8: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Actinobacteria Thermosynechococcus elongatus BP-1 22298606

Actinobacteria Verrucosispora maris AB-18-032 330470352

Actinobacteria Xylanimonas cellulosilytica DSM 15894 269957798

Proteobacteria Alpha Agrobacterium radiobacter K84 222085214

Proteobacteria Alpha Agrobacterium sp. H13-3 325292213

Proteobacteria Alpha Agrobacterium tumefaciens str. C58 159184486

Proteobacteria Alpha Agrobacterium vitis S4 222147878

Proteobacteria Alpha Ahrensia sp. R2A130 304391445

Proteobacteria Alpha Alpha proteobacterium BAL199 163793893

Proteobacteria Alpha Alpha proteobacterium HTCC2255 114769818

Proteobacteria Alpha Aurantimonas manganoxydans SI85-9A1 90418797

Proteobacteria Alpha Brucella abortus bv. 3 str. Tulya 254693323

Proteobacteria Alpha Brucella abortus S19 189023781

Proteobacteria Alpha Brucella abortus str. 2308 A 237815021

Proteobacteria Alpha Brucella ceti M490 256159271

Proteobacteria Alpha Brucella melitensis bv. 1 str. 16M 17987661

Proteobacteria Alpha Brucella ovis ATCC 25840 148559243

Proteobacteria Alpha Brucella pinnipedialis M163 254707728

Proteobacteria Alpha Brucella sp. 83 254718707

Proteobacteria Alpha Brucella sp. BO1 306845169

Proteobacteria Alpha Brucella sp. BO2 306842174

Proteobacteria Alpha Brucella sp. F5 261757776

Proteobacteria Alpha Brucella sp. NF 2653 306837755

Proteobacteria Alpha Brucella sp. NVSL 07-0026 294851924

Proteobacteria Alpha Brucella suis bv. 5 str. 513 254701351

Proteobacteria Alpha Candidatus Puniceispirillum marinum IMCC1322 294084144

Proteobacteria Alpha Fulvimarina pelagi HTCC2506 114704307

Proteobacteria Alpha Gluconacetobacter diazotrophicus PAl 5 162147045

Proteobacteria Alpha Gluconacetobacter diazotrophicus PAl 5 209544107

Proteobacteria Alpha Gluconobacter oxydans 621H 58039275

Proteobacteria Alpha Hoeflea phototrophica DFL-43 163760490

Proteobacteria Alpha Jannaschia sp. CCS1 89052757

Proteobacteria Alpha Labrenzia alexandrii DFL-11 254500917

Proteobacteria Alpha Loktanella vestfoldensis SKA53 84515770

Proteobacteria Alpha Magnetospirillum magnetotacticum MS-1 23005789

Page 9: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Proteobacteria Alpha Mesorhizobium ciceri biovar biserrulae WSM1271 319784597

Proteobacteria Alpha Mesorhizobium loti MAFF303099 13476327

Proteobacteria Alpha Mesorhizobium opportunistum WSM2075 260462430

Proteobacteria Alpha Mesorhizobium sp. BNC1 110633208

Proteobacteria Alpha Oceanibulbus indolifex HEL-45 163745020

Proteobacteria Alpha Oceanicola batsensis HTCC2597 84500530

Proteobacteria Alpha Oceanicola granulosus HTCC2516 89070633

Proteobacteria Alpha Octadecabacter antarcticus 238 254449948

Proteobacteria Alpha Octadecabacter antarcticus 307 254439294

Proteobacteria Alpha Paracoccus denitrificans PD1222 119385230

Proteobacteria Alpha Pelagibaca bermudensis HTCC2601 114764494

Proteobacteria Alpha Phaeobacter gallaeciensis 2.10 163742504

Proteobacteria Alpha Phaeobacter gallaeciensis BS107 163738100

Proteobacteria Alpha Polymorphum gilvum SL003B-26A1 328544612

Proteobacteria Alpha Pseudovibrio sp. JE062 254471870

Proteobacteria Alpha Rhizobium etli Brasil 5 218508418

Proteobacteria Alpha Rhizobium etli CFN 42 6007496

Proteobacteria Alpha Rhizobium etli CFN 42 86356786

Proteobacteria Alpha Rhizobium etli CFN 42 86360624

Proteobacteria Alpha Rhizobium etli CIAT 652 190890847

Proteobacteria Alpha Rhizobium etli CIAT 652 190895595

Proteobacteria Alpha Rhizobium etli CIAT 894 218678528

Proteobacteria Alpha Rhizobium etli CIAT 894 218678558

Proteobacteria Alpha Rhizobium etli CNPAF512 327192924

Proteobacteria Alpha Rhizobium etli CNPAF512 327194327

Proteobacteria Alpha Rhizobium etli IE4771 218661204

Proteobacteria Alpha Rhizobium etli Kim 5 218461260

Proteobacteria Alpha Rhizobium leguminosarum bv. trifolii WSM1325 241203639

Proteobacteria Alpha Rhizobium leguminosarum bv. trifolii WSM2304 209546137

Proteobacteria Alpha Rhizobium leguminosarum bv. trifolii WSM2304 209548387

Proteobacteria Alpha Rhizobium leguminosarum bv. viciae 3841 116251047

Proteobacteria Alpha Rhodobacter capsulatus SB 1003 294675796

Proteobacteria Alpha Rhodobacter sp. SW2 260574033

Proteobacteria Alpha Rhodobacter sphaeroides 2.4.1 77464961

Proteobacteria Alpha Rhodobacter sphaeroides ATCC 17025 146276101

Page 10: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Proteobacteria Alpha Rhodobacter sphaeroides ATCC 17029 126460830

Proteobacteria Alpha Rhodobacter sphaeroides KD131 221640882

Proteobacteria Alpha Rhodobacteraceae bacterium KLH11 254509869

Proteobacteria Alpha Rhodobacterales bacterium HTCC2083 254459860

Proteobacteria Alpha Rhodobacterales bacterium HTCC2150 126724737

Proteobacteria Alpha Rhodobacterales bacterium Y4I 254464983

Proteobacteria Alpha Rhodospirillum centenum SW 209966011

Proteobacteria Alpha Roseibium sp. TrichSKD4 307946095

Proteobacteria Alpha Roseobacter denitrificans OCh 114 110677602

Proteobacteria Alpha Roseobacter litoralis Och 149 163733194

Proteobacteria Alpha Roseobacter sp. AzwK-3b 149913211

Proteobacteria Alpha Roseobacter sp. CCS2 126733855

Proteobacteria Alpha Roseobacter sp. GAI101 254488049

Proteobacteria Alpha Roseobacter sp. MED193 86139437

Proteobacteria Alpha Roseobacter sp. SK209-2-6 126738621

Proteobacteria Alpha Roseomonas cervicalis ATCC 49957 296533358

Proteobacteria Alpha Roseovarius nubinhibens ISM 83952598

Proteobacteria Alpha Roseovarius sp. 217 85705891

Proteobacteria Alpha Roseovarius sp. TM1035 149203072

Proteobacteria Alpha Ruegeria pomeroyi DSS-3 56698173

Proteobacteria Alpha Ruegeria sp. R11 254476702

Proteobacteria Alpha Ruegeria sp. TM1040 99082856

Proteobacteria Alpha Sagittula stellata E-37 126729968

Proteobacteria Alpha Silicibacter lacuscaerulensis ITI-1157 260432253

Proteobacteria Alpha Silicibacter sp. TrichCH4B 259417440

Proteobacteria Alpha Sinorhizobium fredii NGR234 227821283

Proteobacteria Alpha Sinorhizobium medicae WSM419 150395794

Proteobacteria Alpha Sinorhizobium meliloti 1021 15964708

Proteobacteria Alpha Stappia aggregata IAM 12614 118593243

Proteobacteria Alpha Sulfitobacter sp. EE-36 83941900

Proteobacteria Alpha Sulfitobacter sp. NAS-14.1 83855376

Proteobacteria Alpha Thalassiobium sp. R2A62 255262104

Proteobacteria Alpha Uncultured alpha proteobacterium HF0010 30A23 297180865

Proteobacteria Beta Aromatoleum aromaticum EbN1 56478061

Proteobacteria Beta Burkholderia ambifaria AMMD 115358205

Page 11: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Proteobacteria Beta Burkholderia ambifaria IOP40-10 170697773

Proteobacteria Beta Burkholderia ambifaria MC40-6 172062992

Proteobacteria Beta Burkholderia ambifaria MEX-5 171319095

Proteobacteria Beta Burkholderia cenocepacia AU 1054 107026652

Proteobacteria Beta Burkholderia cenocepacia J2315 206563041

Proteobacteria Beta Burkholderia cenocepacia MC0-3 170735843

Proteobacteria Beta Burkholderia dolosa AUO158 254253804

Proteobacteria Beta Burkholderia gladioli BSR3 330817060

Proteobacteria Beta Burkholderia glumae BGR1 238027266

Proteobacteria Beta Burkholderia graminis C4D1M 170694629

Proteobacteria Beta Burkholderia phymatum STM815 186473037

Proteobacteria Beta Burkholderia phytofirmans PsJN 187923420

Proteobacteria Beta Burkholderia sp. 383 78062835

Proteobacteria Beta Burkholderia sp. CCGE1001 323524970

Proteobacteria Beta Burkholderia sp. CCGE1002 295676123

Proteobacteria Beta Burkholderia sp. CCGE1003 307728727

Proteobacteria Beta Burkholderia sp. H160 209520244

Proteobacteria Beta Burkholderia sp. TJI49 325529471

Proteobacteria Beta Burkholderia ubonensis Bu 167589845

Proteobacteria Beta Burkholderia vietnamiensis G4 134293321

Proteobacteria Beta Burkholderia xenovorans LB400 91782800

Proteobacteria Beta Curvibacter putative symbiont of Hydra magnipapillata 260222630

Proteobacteria Gamma Marinomonas sp. MED121 87120917

Proteobacteria Gamma Marinomonas sp. MWYL1 152997724

Proteobacteria Gamma Reinekea sp. MED297 88797291

Chlamydiae Waddlia chondrophila WSU 86-1044 297620972

Cyanobacteria A. marina MBIC11017 158336571

Cyanobacteria Anabaena variabilis ATCC 29413 75906956

Cyanobacteria Arthrospira maxima CS-328 209526418

Cyanobacteria Arthrospira platensis NIES-39 291568392

Cyanobacteria Arthrospira platensis str. Paraca 284054162

Cyanobacteria Crocosphaera watsonii WH 8501 67921826

Cyanobacteria Cyanobacterium UCYN-A 284929646

Cyanobacteria Cyanobium sp. PCC 7001 254431133

Cyanobacteria Cyanothece sp. ATCC 51142 172035973

Page 12: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Cyanobacteria Cyanothece sp. CCY0110 126657781

Cyanobacteria Cyanothece sp. PCC 7424 218438758

Cyanobacteria Cyanothece sp. PCC 7425 220909914

Cyanobacteria Cyanothece sp. PCC 7822 307150002

Cyanobacteria Cyanothece sp. PCC 8801 218247886

Cyanobacteria Cyanothece sp. PCC 8802 257060793

Cyanobacteria Cylindrospermopsis raciborskii CS-505 282898909

Cyanobacteria Gloeobacter violaceus PCC 7421 37522508

Cyanobacteria Lyngbya sp. PCC 8106 119493578

Cyanobacteria Microcoleus chthonoplastes PCC 7420 254412124

Cyanobacteria Nodularia spumigena CCY9414 119513470

Cyanobacteria Nostoc azollae' 0708 298491358

Cyanobacteria Nostoc punctiforme PCC 73102 186684459

Cyanobacteria Nostoc sp. PCC 7120 17231663

Cyanobacteria Oscillatoria sp. PCC 6506 300869174

Cyanobacteria Prochlorococcus marinus str. AS9601 123968582

Cyanobacteria Prochlorococcus marinus str. MIT 9202 254525906

Cyanobacteria Prochlorococcus marinus str. MIT 9211 159903487

Cyanobacteria Prochlorococcus marinus str. MIT 9215 157413417

Cyanobacteria Prochlorococcus marinus str. MIT 9301 126696387

Cyanobacteria Prochlorococcus marinus str. MIT 9303 124023086

Cyanobacteria Prochlorococcus marinus str. MIT 9312 78779363

Cyanobacteria Prochlorococcus marinus str. MIT 9313 33863097

Cyanobacteria Prochlorococcus marinus str. MIT 9515 123966129

Cyanobacteria Prochlorococcus marinus str. NATL1A 124025595

Cyanobacteria Prochlorococcus marinus str. NATL2A 72382062

Cyanobacteria Prochlorococcus marinus subsp. marinus str. CCMP1375 33240343

Cyanobacteria Prochlorococcus marinus subsp. pastoris str. CCMP1986 33861378

Cyanobacteria Raphidiopsis brookii D9 282898076

Cyanobacteria Trichodesmium erythraeum IMS101 113478024

Deinococcus-thermus Deinococcus deserti VCD115 226355283

Deinococcus-thermus Deinococcus deserti VCD115 315271257

Deinococcus-thermus Deinococcus proteolyticus MRP 325283819

Deinococcus-thermus Marinithermus hydrothermalis DSM 14884 328949938

Deinococcus-thermus Meiothermus ruber DSM 1279 291296446

Page 13: New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria Rothia mucilaginosa ATCC 25296 255326689 Actinobacteria Rothia mucilaginosa DY-18 283457373

J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872

Table S1. Continued.

Division Subdivision Organism ID

Deinococcus-thermus Meiothermus silvanus DSM 9946 297567394

Deinococcus-thermus Thermus aquaticus Y51MC23 218296219

Deinococcus-thermus Thermus scotoductus SA-01 320449150

Deinococcus-thermus Thermus thermophilus HB27 46200240

Deinococcus-thermus Thermus thermophilus HB8 55980036

Deltaproteobacteria Bdellovibrio bacteriovorus HD100 42523915

Deltaproteobacteria Desulfarculus baarsii DSM 2075 302344566

Deltaproteobacteria Desulfobacca acetoxidans DSM 11109 328953638

Environment sample Uncultured bacterium 310772408

Environment sample Uncultured marine bacterium EB0 39F01 119713563

Environment sample Uncultured marine bacterium EB000 55B11 161170316

Environment sample Uncultured marine bacterium EB000 55B11 297183843

Gemmatimonadetes Gemmatimonas aurantiaca T-27 226227310

Green nonsulfur Anaerolinea thermophila UNI-1 320159722

Spirochaetes Treponema denticola ATCC 35405 42525716

Spirochaetes Treponema denticola F0402 325475170