New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria...
Transcript of New J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305 … · 2012. 3. 7. · Actinobacteria...
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Fig. S1. Phylogenetic relationships among 350 asparginase proteins. An unrooted phylogenetic tree was calculated based on an MSA (described in Material and Methods). Main cellular divisions are indicated. The numbers at
the nodes are percentages that indicate the levels of bootstrap support, based on 1,000 resample data sets. Only values ≥70% were considered.
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Distribution of type II L-asparaginases.
Division Subdivision Total of asparaginases Percentage
Actinobacteria 130 34.41
Proteobacteria Alphaproteobacteria 100 26.88
Betaproteobacteria 24 6.45
Deltaproteobacteria 3 0.81
Gammaproteobacteria 3 0.81
Cyanobacteria 38 10.48
Firmicutes Clostridia 13 3.49
Paenibacillus 10 2.69
Alicyclobacillus 2 0.54
Bacillales 2 0.54
Brevibacillus 2 0.54
Thermaerobacter 2 0.54
Carboxydothermus 1 0.27
Geobacillus 1 0.27
Halothermothrix 1 0.27
Heliobacterium 1 0.27
Lysinibacillus 1 0.27
Natranaerobius 1 0.27
Negativicutes 1 0.27
Deinococcus-thermus 10 2.69
Spirochaetes 2 0.54
Chlamydiae 1 0.27
Gemmatimonadetes 1 0.27
Green nonsulfur 1 0.27
Environment sample 4 1.08
Eukarya Ascomycetes 13 3.49
Cercozoa 1 0.27
Eudicots 2 0.54
Mosses 2 0.54
Division Subdivision Organism ID
Eukarya Ascomycetes Aspergillus flavus NRRL3357 238506591
Eukarya Ascomycetes Aspergillus fumigatus A1163 159127448
Eukarya Ascomycetes Aspergillus fumigatus Af293 70999426
Eukarya Ascomycetes Aspergillus nidulans FGSC A4 67904416
Eukarya Ascomycetes Aspergillus niger CBS 513.88 145231238
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Eukarya Ascomycetes Aspergillus oryzae 83775992
Eukarya Ascomycetes Aspergillus oryzae RIB40 317158778
Eukarya Ascomycetes Gibberella zeae PH-1 46136617
Eukarya Ascomycetes Nectria haematococca mpVI 77-13-4 302895513
Eukarya Ascomycetes Neosartorya fischeri NRRL 181 119491510
Eukarya Cercozoa Paulinella chromatophora 194477260
Eukarya Ascomycetes Penicillium chrysogenum Wisconsin 54-1255 255941370
Eukarya Mosses Physcomitrella patens subsp. patens 168069789
Eukarya Mosses Physcomitrella patens subsp. patens 168070707
Eukarya Eudicots Ricinus communis 255604380
Eukarya Eudicots Ricinus communis 255604382
Eukarya Ascomycetes Talaromyces stipitatus ATCC 10500 242804081
Eukarya Ascomycetes Verticillium albo-atrum VaMs.102 302410363
Firmicutes Clostridia Acetivibrio cellulolyticus CD2 303240441
Firmicutes Alicyclobacillus Alicyclobacillus acidocaldarius LAA1 218289277
Firmicutes Alicyclobacillus Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 258512825
Firmicutes Bacillales Bacillus sp. 2 A 57 CT2 319652321
Firmicutes Bacillales Bacillus sp. B14905 126650948
Firmicutes Brevibacillus Brevibacillus brevis NBRC 100599 226311347
Firmicutes Brevibacillus Brevibacillus brevis NBRC 100599 226314167
Firmicutes Carboxydothermus Carboxydothermus hydrogenoformans Z-2901 78043850
Firmicutes Clostridia Clostridium cellulovorans 743B 302873329
Firmicutes Clostridia Clostridium cellulovorans 743B 302873330
Firmicutes Clostridia Clostridium kluyveri DSM 555 153953656
Firmicutes Clostridia Clostridium sp. D5 325263516
Firmicutes Clostridia Clostridium sp. L2-50 160895093
Firmicutes Clostridia Clostridium sticklandii DSM 519 310658069
Firmicutes Clostridia Coprococcus eutactus ATCC 27759 163815678
Firmicutes Clostridia Coprococcus sp. ART55 295093541
Firmicutes Clostridia Coprothermobacter proteolyticus DSM 5265 206896230
Firmicutes Clostridia Desulfotomaculum reducens MI-1 134299199
Firmicutes Clostridia Dethiobacter alkaliphilus AHT 1 225174478
Firmicutes Geobacillus Geobacillus sp. G11MC16 196250668
Firmicutes Halothermothrix Halothermothrix orenii H 168 220931024
Firmicutes Heliobacterium Heliobacterium modesticaldum Ice1 167629794
Firmicutes Lysinibacillus Lysinibacillus fusiformis ZC1 299535011
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Firmicutes Negativicutes Megamonas hypermegale ART12 291532430
Firmicutes Natranaerobius Natranaerobius thermophilus JW 188584952
Firmicutes Paenibacillus Paenibacillus curdlanolyticus YK9 304406104
Firmicutes Paenibacillus Paenibacillus larvae subsp. larvae B-3650 322384345
Firmicutes Paenibacillus Paenibacillus larvae subsp. larvae BRL-230010 167462814
Firmicutes Paenibacillus Paenibacillus sp. HGF5 329925748
Firmicutes Paenibacillus Paenibacillus sp. HGF5 329928575
Firmicutes Paenibacillus Paenibacillus sp. oral taxon 786 str. D14 253577384
Firmicutes Paenibacillus Paenibacillus sp. Y412MC10 261407733
Firmicutes Paenibacillus Paenibacillus sp. Y412MC10 261409319
Firmicutes Paenibacillus Paenibacillus vortex V453 315647849
Firmicutes Paenibacillus Paenibacillus vortex V453 315649474
Firmicutes Clostridia Peptoniphilus duerdenii ATCC BAA-1640 304438752
Firmicutes Thermaerobacter Thermaerobacter marianensis DSM 12885 317121113
Firmicutes Thermaerobacter Thermaerobacter subterraneus DSM 13965 313903541
Actinobacteria Actinomyces urogenitalis DSM 15434 227497609
Actinobacteria Actinosynnema mirum DSM 43827 256375702
Actinobacteria Aeromicrobium marinum DSM 15272 311744325
Actinobacteria Amycolatopsis mediterranei U32 300784065
Actinobacteria Amycolatopsis mediterranei U32 300790822
Actinobacteria Arthrobacter arilaitensis Re117 308178622
Actinobacteria Arthrobacter aurescens TC1 119961188
Actinobacteria Arthrobacter aurescens TC1 119961755
Actinobacteria Arthrobacter chlorophenolicus A6 220913930
Actinobacteria Arthrobacter chlorophenolicus A6 220914491
Actinobacteria Arthrobacter phenanthrenivorans Sphe3 325964661
Actinobacteria Arthrobacter phenanthrenivorans Sphe3 325965120
Actinobacteria Arthrobacter sp. FB24 116671950
Actinobacteria Arthrobacter sp. FB24 116672517
Actinobacteria Beutenbergia cavernae DSM 12333 229821888
Actinobacteria Brevibacterium linens BL2 260903924
Actinobacteria Brevibacterium mcbrellneri ATCC 49030 295395678
Actinobacteria Catenulispora acidiphila DSM 44928 256397338
Actinobacteria Cellulomonas flavigena DSM 20109 296130915
Actinobacteria Clavibacter michiganensis subsp. michiganensis NCPPB 382 148273348
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Actinobacteria Clavibacter michiganensis subsp. sepedonicus 170782542
Actinobacteria Corynebacterium glutamicum R 145296908
Actinobacteria Dermacoccus sp. Ellin185 309812570
Actinobacteria Frankia alni ACN14a 111220200
Actinobacteria Frankia sp. CcI3 86739054
Actinobacteria Frankia sp. EAN1pec 158318211
Actinobacteria Frankia sp. EUN1f 288918101
Actinobacteria Geodermatophilus obscurus DSM 43160 284992988
Actinobacteria Intrasporangium calvum DSM 43043 317126049
Actinobacteria Janibacter sp. HTCC2649 84498441
Actinobacteria Jonesia denitrificans DSM 20603 256832386
Actinobacteria Kineococcus radiotolerans SRS30216 152964081
Actinobacteria Kitasatospora setae KM-6054 311897750
Actinobacteria Kocuria rhizophila DC2201 184200073
Actinobacteria Kribbella flavida DSM 17836 284028970
Actinobacteria Kribbella flavida DSM 17836 284030253
Actinobacteria Kytococcus sed-eentarius DSM 20547 256824242
Actinobacteria Leifsonia xyli subsp. xyli str. CTCB07 50954874
Actinobacteria Marine actinobacterium PHSC20C1 88855346
Actinobacteria Microbacterium testaceum StLB037 323356852
Actinobacteria Micrococcus luteus NCTC 2665 239918336
Actinobacteria Micrococcus luteus SK58 289704665
Actinobacteria Microcystis aeruginosa NIES-843 166363295
Actinobacteria Microcystis aeruginosa PCC 7806 159026061
Actinobacteria Micromonospora aurantiaca ATCC 27029 302870148
Actinobacteria Micromonospora sp. ATCC 39149 238061303
Actinobacteria Micromonospora sp. L5 315503575
Actinobacteria Nakamurella multipartita DSM 44233 258651536
Actinobacteria Nakamurella multipartita DSM 44233 258655144
Actinobacteria Nocardia farcinica IFM 10152 54022548
Actinobacteria Nocardioidaceae bacterium Broad-1 326332009
Actinobacteria Nocardioidaceae bacterium Broad-1 326332373
Actinobacteria Nocardioides sp. JS614 119718423
Actinobacteria Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 297559414
Actinobacteria Pseudonocardia sp. P1 324999719
Actinobacteria Renibacterium salmoninarum ATCC 33209 163840601
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Actinobacteria Rhodococcus equi 103S 312138306
Actinobacteria Rhodococcus equi ATCC 33707 325674776
Actinobacteria Rhodococcus erythropolis PR4 226308309
Actinobacteria Rhodococcus jostii RHA1 111021814
Actinobacteria Rhodococcus opacus B4 226364336
Actinobacteria Rothia dentocariosa ATCC 17931 311112177
Actinobacteria Rothia dentocariosa M567 300742261
Actinobacteria Rothia mucilaginosa ATCC 25296 255326689
Actinobacteria Rothia mucilaginosa DY-18 283457373
Actinobacteria Rubrobacter xylanophilus DSM 9941 108803916
Actinobacteria Saccharomonospora viridis DSM 43017 257057716
Actinobacteria Saccharopolyspora erythraea NRRL 2338 134101679
Actinobacteria Saccharopolyspora erythraea NRRL 2338 134103539
Actinobacteria Saccharopolyspora erythraea NRRL 2338 291003151
Actinobacteria Salinispora arenicola CNS-205 159036045
Actinobacteria Salinispora tropica CNB-440 145592881
Actinobacteria Stackebrandtia nassauensis DSM 44728 291303565
Actinobacteria Streptomyces albus J1074 239980443
Actinobacteria Streptomyces avermitilis MA-4680 29827857
Actinobacteria Streptomyces avermitilis MA-4680 29830568
Actinobacteria Streptomyces bingchenggensis BCW-1 297162188
Actinobacteria Streptomyces cf. griseus XylebKG-1 326778403
Actinobacteria Streptomyces clavuligerus ATCC 27064 254388555
Actinobacteria Streptomyces coelicolor A3(2) 21222582
Actinobacteria Streptomyces flavogriseus ATCC 33331 320009446
Actinobacteria Streptomyces ghanaensis ATCC 14672 239930424
Actinobacteria Streptomyces griseoaurantiacus M045 329941805
Actinobacteria Streptomyces griseoflavus Tu4000 302557056
Actinobacteria Streptomyces griseus subsp. griseus NBRC 13350 182437768
Actinobacteria Streptomyces hygroscopicus ATCC 53653 302540620
Actinobacteria Streptomyces lividans TK24 256786347
Actinobacteria Streptomyces pristinaespiralis ATCC 25486 297193549
Actinobacteria Streptomyces roseosporus NRRL 15998 239942374
Actinobacteria Streptomyces scabiei 87.22 290962651
Actinobacteria Streptomyces sp. AA4 302525305
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Actinobacteria Streptomyces sp. AA4 302531019
Actinobacteria Streptomyces sp. ACTE 282860451
Actinobacteria Streptomyces sp. C 302532611
Actinobacteria Streptomyces sp. SA3 actG 318059668
Actinobacteria Streptomyces sp. SPB74 295837498
Actinobacteria Streptomyces sp. SPB78 302520801
Actinobacteria Streptomyces sviceus ATCC 29083 297197644
Actinobacteria Streptomyces thermoluteus subsp. fuscus 311692183
Actinobacteria Streptomyces violaceusniger Tu 4113 307325565
Actinobacteria Streptomyces viridochromogenes DSM 40736 302549289
Actinobacteria Streptosporangium roseum DSM 43021 271962474
Actinobacteria Streptosporangium roseum DSM 43021 271967569
Actinobacteria Synechococcus elongatus PCC 6301 56751349
Actinobacteria Synechococcus sp. BL107 116070927
Actinobacteria Synechococcus sp. CB0101 318041821
Actinobacteria Synechococcus sp. CB0205 317970256
Actinobacteria Synechococcus sp. CC9311 113953369
Actinobacteria Synechococcus sp. CC9605 78213336
Actinobacteria Synechococcus sp. CC9902 78184415
Actinobacteria Synechococcus sp. JA-2-3B'a(2-13) 86608517
Actinobacteria Synechococcus sp. JA-3-3Ab 86605633
Actinobacteria Synechococcus sp. PCC 7002 170077710
Actinobacteria Synechococcus sp. PCC 7335 254423377
Actinobacteria Synechococcus sp. RCC307 148242083
Actinobacteria Synechococcus sp. RS9916 116072932
Actinobacteria Synechococcus sp. RS9917 87125674
Actinobacteria Synechococcus sp. WH 5701 87303377
Actinobacteria Synechococcus sp. WH 7803 148239761
Actinobacteria Synechococcus sp. WH 7805 88808798
Actinobacteria Synechococcus sp. WH 8102 33865368
Actinobacteria Synechococcus sp. WH 8109 260435365
Actinobacteria Synechocystis sp. PCC 6803 16331826
Actinobacteria Thermobispora bispora DSM 43833 296268471
Actinobacteria Thermomonospora curvata DSM 43183 269124922
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Actinobacteria Thermosynechococcus elongatus BP-1 22298606
Actinobacteria Verrucosispora maris AB-18-032 330470352
Actinobacteria Xylanimonas cellulosilytica DSM 15894 269957798
Proteobacteria Alpha Agrobacterium radiobacter K84 222085214
Proteobacteria Alpha Agrobacterium sp. H13-3 325292213
Proteobacteria Alpha Agrobacterium tumefaciens str. C58 159184486
Proteobacteria Alpha Agrobacterium vitis S4 222147878
Proteobacteria Alpha Ahrensia sp. R2A130 304391445
Proteobacteria Alpha Alpha proteobacterium BAL199 163793893
Proteobacteria Alpha Alpha proteobacterium HTCC2255 114769818
Proteobacteria Alpha Aurantimonas manganoxydans SI85-9A1 90418797
Proteobacteria Alpha Brucella abortus bv. 3 str. Tulya 254693323
Proteobacteria Alpha Brucella abortus S19 189023781
Proteobacteria Alpha Brucella abortus str. 2308 A 237815021
Proteobacteria Alpha Brucella ceti M490 256159271
Proteobacteria Alpha Brucella melitensis bv. 1 str. 16M 17987661
Proteobacteria Alpha Brucella ovis ATCC 25840 148559243
Proteobacteria Alpha Brucella pinnipedialis M163 254707728
Proteobacteria Alpha Brucella sp. 83 254718707
Proteobacteria Alpha Brucella sp. BO1 306845169
Proteobacteria Alpha Brucella sp. BO2 306842174
Proteobacteria Alpha Brucella sp. F5 261757776
Proteobacteria Alpha Brucella sp. NF 2653 306837755
Proteobacteria Alpha Brucella sp. NVSL 07-0026 294851924
Proteobacteria Alpha Brucella suis bv. 5 str. 513 254701351
Proteobacteria Alpha Candidatus Puniceispirillum marinum IMCC1322 294084144
Proteobacteria Alpha Fulvimarina pelagi HTCC2506 114704307
Proteobacteria Alpha Gluconacetobacter diazotrophicus PAl 5 162147045
Proteobacteria Alpha Gluconacetobacter diazotrophicus PAl 5 209544107
Proteobacteria Alpha Gluconobacter oxydans 621H 58039275
Proteobacteria Alpha Hoeflea phototrophica DFL-43 163760490
Proteobacteria Alpha Jannaschia sp. CCS1 89052757
Proteobacteria Alpha Labrenzia alexandrii DFL-11 254500917
Proteobacteria Alpha Loktanella vestfoldensis SKA53 84515770
Proteobacteria Alpha Magnetospirillum magnetotacticum MS-1 23005789
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Proteobacteria Alpha Mesorhizobium ciceri biovar biserrulae WSM1271 319784597
Proteobacteria Alpha Mesorhizobium loti MAFF303099 13476327
Proteobacteria Alpha Mesorhizobium opportunistum WSM2075 260462430
Proteobacteria Alpha Mesorhizobium sp. BNC1 110633208
Proteobacteria Alpha Oceanibulbus indolifex HEL-45 163745020
Proteobacteria Alpha Oceanicola batsensis HTCC2597 84500530
Proteobacteria Alpha Oceanicola granulosus HTCC2516 89070633
Proteobacteria Alpha Octadecabacter antarcticus 238 254449948
Proteobacteria Alpha Octadecabacter antarcticus 307 254439294
Proteobacteria Alpha Paracoccus denitrificans PD1222 119385230
Proteobacteria Alpha Pelagibaca bermudensis HTCC2601 114764494
Proteobacteria Alpha Phaeobacter gallaeciensis 2.10 163742504
Proteobacteria Alpha Phaeobacter gallaeciensis BS107 163738100
Proteobacteria Alpha Polymorphum gilvum SL003B-26A1 328544612
Proteobacteria Alpha Pseudovibrio sp. JE062 254471870
Proteobacteria Alpha Rhizobium etli Brasil 5 218508418
Proteobacteria Alpha Rhizobium etli CFN 42 6007496
Proteobacteria Alpha Rhizobium etli CFN 42 86356786
Proteobacteria Alpha Rhizobium etli CFN 42 86360624
Proteobacteria Alpha Rhizobium etli CIAT 652 190890847
Proteobacteria Alpha Rhizobium etli CIAT 652 190895595
Proteobacteria Alpha Rhizobium etli CIAT 894 218678528
Proteobacteria Alpha Rhizobium etli CIAT 894 218678558
Proteobacteria Alpha Rhizobium etli CNPAF512 327192924
Proteobacteria Alpha Rhizobium etli CNPAF512 327194327
Proteobacteria Alpha Rhizobium etli IE4771 218661204
Proteobacteria Alpha Rhizobium etli Kim 5 218461260
Proteobacteria Alpha Rhizobium leguminosarum bv. trifolii WSM1325 241203639
Proteobacteria Alpha Rhizobium leguminosarum bv. trifolii WSM2304 209546137
Proteobacteria Alpha Rhizobium leguminosarum bv. trifolii WSM2304 209548387
Proteobacteria Alpha Rhizobium leguminosarum bv. viciae 3841 116251047
Proteobacteria Alpha Rhodobacter capsulatus SB 1003 294675796
Proteobacteria Alpha Rhodobacter sp. SW2 260574033
Proteobacteria Alpha Rhodobacter sphaeroides 2.4.1 77464961
Proteobacteria Alpha Rhodobacter sphaeroides ATCC 17025 146276101
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Proteobacteria Alpha Rhodobacter sphaeroides ATCC 17029 126460830
Proteobacteria Alpha Rhodobacter sphaeroides KD131 221640882
Proteobacteria Alpha Rhodobacteraceae bacterium KLH11 254509869
Proteobacteria Alpha Rhodobacterales bacterium HTCC2083 254459860
Proteobacteria Alpha Rhodobacterales bacterium HTCC2150 126724737
Proteobacteria Alpha Rhodobacterales bacterium Y4I 254464983
Proteobacteria Alpha Rhodospirillum centenum SW 209966011
Proteobacteria Alpha Roseibium sp. TrichSKD4 307946095
Proteobacteria Alpha Roseobacter denitrificans OCh 114 110677602
Proteobacteria Alpha Roseobacter litoralis Och 149 163733194
Proteobacteria Alpha Roseobacter sp. AzwK-3b 149913211
Proteobacteria Alpha Roseobacter sp. CCS2 126733855
Proteobacteria Alpha Roseobacter sp. GAI101 254488049
Proteobacteria Alpha Roseobacter sp. MED193 86139437
Proteobacteria Alpha Roseobacter sp. SK209-2-6 126738621
Proteobacteria Alpha Roseomonas cervicalis ATCC 49957 296533358
Proteobacteria Alpha Roseovarius nubinhibens ISM 83952598
Proteobacteria Alpha Roseovarius sp. 217 85705891
Proteobacteria Alpha Roseovarius sp. TM1035 149203072
Proteobacteria Alpha Ruegeria pomeroyi DSS-3 56698173
Proteobacteria Alpha Ruegeria sp. R11 254476702
Proteobacteria Alpha Ruegeria sp. TM1040 99082856
Proteobacteria Alpha Sagittula stellata E-37 126729968
Proteobacteria Alpha Silicibacter lacuscaerulensis ITI-1157 260432253
Proteobacteria Alpha Silicibacter sp. TrichCH4B 259417440
Proteobacteria Alpha Sinorhizobium fredii NGR234 227821283
Proteobacteria Alpha Sinorhizobium medicae WSM419 150395794
Proteobacteria Alpha Sinorhizobium meliloti 1021 15964708
Proteobacteria Alpha Stappia aggregata IAM 12614 118593243
Proteobacteria Alpha Sulfitobacter sp. EE-36 83941900
Proteobacteria Alpha Sulfitobacter sp. NAS-14.1 83855376
Proteobacteria Alpha Thalassiobium sp. R2A62 255262104
Proteobacteria Alpha Uncultured alpha proteobacterium HF0010 30A23 297180865
Proteobacteria Beta Aromatoleum aromaticum EbN1 56478061
Proteobacteria Beta Burkholderia ambifaria AMMD 115358205
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Proteobacteria Beta Burkholderia ambifaria IOP40-10 170697773
Proteobacteria Beta Burkholderia ambifaria MC40-6 172062992
Proteobacteria Beta Burkholderia ambifaria MEX-5 171319095
Proteobacteria Beta Burkholderia cenocepacia AU 1054 107026652
Proteobacteria Beta Burkholderia cenocepacia J2315 206563041
Proteobacteria Beta Burkholderia cenocepacia MC0-3 170735843
Proteobacteria Beta Burkholderia dolosa AUO158 254253804
Proteobacteria Beta Burkholderia gladioli BSR3 330817060
Proteobacteria Beta Burkholderia glumae BGR1 238027266
Proteobacteria Beta Burkholderia graminis C4D1M 170694629
Proteobacteria Beta Burkholderia phymatum STM815 186473037
Proteobacteria Beta Burkholderia phytofirmans PsJN 187923420
Proteobacteria Beta Burkholderia sp. 383 78062835
Proteobacteria Beta Burkholderia sp. CCGE1001 323524970
Proteobacteria Beta Burkholderia sp. CCGE1002 295676123
Proteobacteria Beta Burkholderia sp. CCGE1003 307728727
Proteobacteria Beta Burkholderia sp. H160 209520244
Proteobacteria Beta Burkholderia sp. TJI49 325529471
Proteobacteria Beta Burkholderia ubonensis Bu 167589845
Proteobacteria Beta Burkholderia vietnamiensis G4 134293321
Proteobacteria Beta Burkholderia xenovorans LB400 91782800
Proteobacteria Beta Curvibacter putative symbiont of Hydra magnipapillata 260222630
Proteobacteria Gamma Marinomonas sp. MED121 87120917
Proteobacteria Gamma Marinomonas sp. MWYL1 152997724
Proteobacteria Gamma Reinekea sp. MED297 88797291
Chlamydiae Waddlia chondrophila WSU 86-1044 297620972
Cyanobacteria A. marina MBIC11017 158336571
Cyanobacteria Anabaena variabilis ATCC 29413 75906956
Cyanobacteria Arthrospira maxima CS-328 209526418
Cyanobacteria Arthrospira platensis NIES-39 291568392
Cyanobacteria Arthrospira platensis str. Paraca 284054162
Cyanobacteria Crocosphaera watsonii WH 8501 67921826
Cyanobacteria Cyanobacterium UCYN-A 284929646
Cyanobacteria Cyanobium sp. PCC 7001 254431133
Cyanobacteria Cyanothece sp. ATCC 51142 172035973
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Cyanobacteria Cyanothece sp. CCY0110 126657781
Cyanobacteria Cyanothece sp. PCC 7424 218438758
Cyanobacteria Cyanothece sp. PCC 7425 220909914
Cyanobacteria Cyanothece sp. PCC 7822 307150002
Cyanobacteria Cyanothece sp. PCC 8801 218247886
Cyanobacteria Cyanothece sp. PCC 8802 257060793
Cyanobacteria Cylindrospermopsis raciborskii CS-505 282898909
Cyanobacteria Gloeobacter violaceus PCC 7421 37522508
Cyanobacteria Lyngbya sp. PCC 8106 119493578
Cyanobacteria Microcoleus chthonoplastes PCC 7420 254412124
Cyanobacteria Nodularia spumigena CCY9414 119513470
Cyanobacteria Nostoc azollae' 0708 298491358
Cyanobacteria Nostoc punctiforme PCC 73102 186684459
Cyanobacteria Nostoc sp. PCC 7120 17231663
Cyanobacteria Oscillatoria sp. PCC 6506 300869174
Cyanobacteria Prochlorococcus marinus str. AS9601 123968582
Cyanobacteria Prochlorococcus marinus str. MIT 9202 254525906
Cyanobacteria Prochlorococcus marinus str. MIT 9211 159903487
Cyanobacteria Prochlorococcus marinus str. MIT 9215 157413417
Cyanobacteria Prochlorococcus marinus str. MIT 9301 126696387
Cyanobacteria Prochlorococcus marinus str. MIT 9303 124023086
Cyanobacteria Prochlorococcus marinus str. MIT 9312 78779363
Cyanobacteria Prochlorococcus marinus str. MIT 9313 33863097
Cyanobacteria Prochlorococcus marinus str. MIT 9515 123966129
Cyanobacteria Prochlorococcus marinus str. NATL1A 124025595
Cyanobacteria Prochlorococcus marinus str. NATL2A 72382062
Cyanobacteria Prochlorococcus marinus subsp. marinus str. CCMP1375 33240343
Cyanobacteria Prochlorococcus marinus subsp. pastoris str. CCMP1986 33861378
Cyanobacteria Raphidiopsis brookii D9 282898076
Cyanobacteria Trichodesmium erythraeum IMS101 113478024
Deinococcus-thermus Deinococcus deserti VCD115 226355283
Deinococcus-thermus Deinococcus deserti VCD115 315271257
Deinococcus-thermus Deinococcus proteolyticus MRP 325283819
Deinococcus-thermus Marinithermus hydrothermalis DSM 14884 328949938
Deinococcus-thermus Meiothermus ruber DSM 1279 291296446
J. Microbiol. Biotechnol. (2010), 20(11), 1301–1305http://dx.doi.org/10.4014/jmb.1107.07047First published online January 5, 2012pISSN 1017-7825 eISSN 1738-8872
Table S1. Continued.
Division Subdivision Organism ID
Deinococcus-thermus Meiothermus silvanus DSM 9946 297567394
Deinococcus-thermus Thermus aquaticus Y51MC23 218296219
Deinococcus-thermus Thermus scotoductus SA-01 320449150
Deinococcus-thermus Thermus thermophilus HB27 46200240
Deinococcus-thermus Thermus thermophilus HB8 55980036
Deltaproteobacteria Bdellovibrio bacteriovorus HD100 42523915
Deltaproteobacteria Desulfarculus baarsii DSM 2075 302344566
Deltaproteobacteria Desulfobacca acetoxidans DSM 11109 328953638
Environment sample Uncultured bacterium 310772408
Environment sample Uncultured marine bacterium EB0 39F01 119713563
Environment sample Uncultured marine bacterium EB000 55B11 161170316
Environment sample Uncultured marine bacterium EB000 55B11 297183843
Gemmatimonadetes Gemmatimonas aurantiaca T-27 226227310
Green nonsulfur Anaerolinea thermophila UNI-1 320159722
Spirochaetes Treponema denticola ATCC 35405 42525716
Spirochaetes Treponema denticola F0402 325475170