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Transcript of N.E.Quest Volume 5, Issue 2, July 2011
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
Newsletter Of
NORTH EAST INDIA RESEARCH FORUM
http://tech.groups.yahoo.com/group/northeast_india_research/ www.neindiaresearch.org
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
3
EDITORIAL
It is a great privilege to address the editorial of N. E. Quest. Thanks to for giving me this opportunity. At the outset I wish success for N. E. Quest, current and forthcoming issues. Congratulations for all published issues with the accomplishments in its intended purposes. Thanks to advisory committee, editorial board and members and contributors for their leadership in bringing the community into one place called North East India Research Forum. Heartiest welcome to all new members and hope they will actively participate exchanging their ideas and goals.
I am glad to introduce few new contents in this issue. Spectrum is one of them that holds you
dream. Facebook discussion brings us to talk about several crucial and sensitive topics with valuable opinions by the forum members. Invited article is a creative thought particularly publishing articles like Industrialization, Capitalism and Communism that surely provides flavour from off domain. Thank to authors and contributors.
I want to focus the importance of two closely related all-encompassing topics, teaching and
research. Teaching and basic research can only bring the prosperity and integrity of a nation. The famous quote by Abraham Lincoln during the midst of civil war, "I strongly refused to accept America's sole purpose was mere survival, so I created National Academy of Sciences, founded colleges, and began the work of the transcontinental railroad and towards the discovery of new and useful things" easily demonstrates tremendous importance of science for a better world and mankind. People always love to talk about "research", "technology", "innovation" like exciting phrases. But we should be always cautiously attentive to teaching and how to educate people. Nevertheless we all know the quality of teaching is the most influential single factor in determining whether a student will succeed or fail. The progress and prosperity of future generations will depend on what we do now to educate the next generation. Thus without genuine expertise in the field of teaching the problem is only going to get worse. It is true that integration of a nation is strongly dependent on basic scientific research, innovation, and technologies. Vannevar Bush, who was the scientific advisor to President Franklin Roosevelt, quoted as "Basic scientific research is the scientific capital".
Let me share you one novel thought of present time in the development of pharmaceutical
industries. We all probably know the development of just one successful drug from its design stage to over the counter (tablets or doses form) costing billion dollars and 10-20 valuable years to the industry. All manufacturing processes involved in this development are performed individually known as batch processes. MIT and the Swiss pharma industry Novartis in collaboration started a multi-year innovative project with the aim of bringing all batch processes into continuous mode. This means starting from the synthesis of a drug in organic laboratory to the manufacturing of tablet will be in continuous. This is one of the simple attempts to put forward ideas towards application and ease life. I am sure if we work with our friends around the world, we proceed more rapidly and more cost-effectively to resolve many of the challenges we face. Also this will help us reflect globally in character. Let’s work hard with a genuine goal and legal motivation and look for new frontiers. I wish long live of this forum. We shall feel happy if N. E. Quest is contributing something toward educate our people by sharing knowledge.
Dr. Bipul Sarma
Chem. Eng. Dept., MIT, USA
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
4
CONTENT 1 About The North East India Research Forum 5 2 Science News 9 3 Spectrum by Bipul Sarma 12 4 Instrument (a) Flash Chromatography [CombiFlash® Companion®]
by Progyashree Goswami 13
(b) Nuclear Magnetic Resonance (NMR) - Mega Hertz to Giga Hertz by Dr. Ashim J. Thakur
16
5 Article Section (a) Synthesis and Radical Polymerization of Adamantyl Methacrylate Monomers
having Hemiacetal Moieties by Dr. Balaka Barkataky
19
(b) Quantum Dots and its application in cancer research by Dr. Mausam Kalita
25
(c) The Flying Jewel of Nature - Butterfly by Nabanita Das
33
(d) Next generation optical tools for biomedical applications by Dr. Bhargab Das
37
6 Invited Article (a) Industrialization, Capitalism and Communism
by Pradyumna Kalita 42
(b) Growth of Single Crystals from Hydrothermal Synthesis by Dr. Prashanth W. Menezes
44
7 Thesis Synopsis (a) Automated Analysis of Stellar Photometric and Spectroscopic Data from Space
Missions and Classification of Astronomical Objects Archana Bora
47
(b) Synthesis and labeling strategy for indirect detection of estrogen-derived DNA adducts using aqueous quantum dots Mausam Kalita
50
(c) Total Synthesis of Medium Sized Natural Lactones Partha Pratim Saikia
52
8 Facebook Discussion Does Indian Research meet World class standard? Eds: Saitanya K Bharadwaj 54 9 Members Face 59 10 News & Achievements 61 11 Letters to Editor 61 by Gitashree Goswami 12 Through The Lenses 62 by Bipul Sarma 13 Fellowship, Advertisement, Opportunity 63
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
5
ABOUT North East India Research Forum 1. Created on 13
th November 2004.
2. Growth Every forum has to pass through difficult phases at the time of birth. NE India Research Forum is also no exception. At the very beginning, it was a march hardly with few members (from chemistry only) and today the forum comprised of a force of over 400 elite members. Now we are in a position such that people voluntarily come and join the group irrespective of disciplines.
Graph of no of members vs months 3. Forum Discussions Necessity of directory of all the
members of the forum. Possibility of organising conference in
the N. E. India. Taking initiation on setting up of South
East Asian Scientific Institute. On selection of Best paper award. Let us introspect.
4. Poll conducted and results • North East India is lacking behind the rest
of the country due to- 1. Geographical constrain = 0% 2. Bad leadership = 40% 3. Lack of work culture = 36% 4. Corruption = 18%
5. Apathy from Central Govt. = 4%
• Which area of science is going to dominate by creating a great impact on society in next decade? 1. Nanoscience & nanotechnology = 22% 2. Biotechnology = 11% 3. Nanobiotechnology = 38% 4. Chemical Engineering = 0% 5. Medicine = 11% 6. Others = 16% 7. None = 0%
• Kindly let us know your view regarding the following topic. What activities of this group you like most? 1. Research articles = 33% 2. Information about vacancy/positions available = 10% 3. Way to have a contact with all members = 29% 4. Scientific discussions = 14% 5. Others = 2%
• Selection of name for Newsletter There were total 36 proposals submitted by
members of the forum for the Newsletter. The name proposed by Mr. Abhishek Choudhury N. E. QUEST received the maximum number of votes and accepted as the name of the Newsletter. • How often should we publish our newsletter
'' N. E. Quest’’? 1. Every 3 months = 61% 2. Every 6 months = 38% 3. Once a year = 0%
5. Editors of NE-Quest Issues 1. Vol 1 Issue 1 April, 2007 Dr. Arindam Adhikari 2. Vol 1 Issue 2 July 2007 Dr. Tankeswar Nath 3. Vol 1 Issue 3 October 2007 Dr. Ashim Jyoti Thakur 4. Vol 1 Issue 4 January 2008 Mr. Pranjal Saikia 5. Vol 2 Issue 1 April 2008
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
6
Dr. Sasanka Deka 6. Vol 2 Issue 2 July 2008 Dr. Rashmi Rekha Devi 7. Vol 2 Issue 3 October 2008 Dr. Prodeep Phukan 8. Vol 2 Issue 4 January 2009 Dr. Manab Sharma 9. Vol 3 Issue 1 April 2009 Dr. Debananda Ningthoujam 10. Vol 3 Issue 2 July 2009 Dr. Robert Singh Thangjam 11. Vol 3 Issue 3 October 2009 Dr. Pankaj Bharali 12. Vol 3 Issue 4 January 2010 Dr. Abdul Wahab 13. Vol 4 Issue 1 April 2010 Dr. Utpal Bora 14. Vol 4 Issue 2 July 2010 Dr. Babita Baruwati 15. Vol 4 Issue 3, October 2010 Ms. Ananya Saikia 16. Vol 4 Issue 4, Janury 2011 Dr. Saitanya Bharadwaj 17. Vol 5 Issue 1, April 2011 Dr. Mahen Konwar 18. Vol 5 Issue 2, July 2011 Dr. Bipul Sarma 6. Moderator Arindam Adhikari, Ph.D. CECRI, Kadaikudi, Tamilnadu Email: [email protected] Ashim J. Thakur, Ph.D. Chemical Science Dept, Tezpur University, Tezpur, Assam Email: [email protected] Utpal Borah, Ph.D. Dibrugarh University, Assam, India Email: [email protected] Khirud Gogoi, Ph.D. University of California, San Diego, La Jolla, USA; Email:[email protected] 7. Cover Page design Anirban Adhikari
8. Logo design Manab Sharma 9. Domain/URL www.neindiaresearch.org 10. Future activities Proper planning and consequent implementation always play an important role in every aspect. Some of the topics / activities / suggestions which were being discussed, time to time in the forum will get top priorities in our future activities. Those are mentioned here, • Preparing complete online database of N.E.
researchers with details. • Organising conference in the N.E. region-
proposed by Dr. Utpal Bora. • Research collaboration among forum
members. • Motivate student to opt for science
education. • Help master’s students in doing projects in
different organisation-proposed by Dr. Khirud Gogoi.
• Supporting schools in rural areas by different ways.
• Best paper awards. • Compilation of book on ‘Education system
of different countries’. Initiative for this project is taken by Dr. Mantu Bhuyan, NEIST, Jorhat, Assam
11. New activities • Guidelines for the members are being
formulated by the moderators of the NE India Research Forum. These guidelines are placed in the forum for discussion.
• HiMedia Laboratories Pvt. Ltd is willing to sponsor some future activities of the forum and have asked for space to advertise for their products in the N. E. Quest. Starting this issue (July 2009) N. E. Quest is providing one page for the advertisement. Details about this deal will be informed soon once finalised. Thanks to Dr. Robert Thangjam for his initiative in this matter.
• North East India Research Forum cell has been started in the following colleges,
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
7
Dibrugarh University; Contact: Dr. Jitu Ranjan Chetia, Dept. of Chemistry Email: [email protected] Tezpur University; Contact: Dr. Ashim J. Thakur, Dept. of Chemistry Email: [email protected] Phone: 03712 267008/9/10 (5059) Manipur University; Contact: Dr. Debananda S. Ningthoujam, Coordinator, Microbial Biotech Lab Reader & Head, Dept of Biochemistry, Manipur University, Imphal Email: [email protected] Mizoram University; Contact: Dr. Thangjam Robert Singh, Assistant Professor, Department of Biotechnology, Mizoram University, Aizawl Jorhat Institute of Technology; Contact: Mr. Prasanta Kumar Bordoloi, Senior Lecturer Email: [email protected] Mobile: 09957036339 Arya Vidyapeth College, Guwahati Contact: Mr. Pabitra Kalita, Senior Lecturer Email: [email protected] Mobile No: 09613133859 & Dr. Pradip Bhattacharyya, Senior Lecturer Email: [email protected] Mobile No: 09864087494 Pandu College; Contact: Mr. Sanchay Jyoti Bora Lecturer, Department of Chemistry E-mail: [email protected] Mobile: 09854078814 Bajali college, Pathsala; Contact: Mr. Arindam Talukdar, Lecturer, Environmental & Tourism Dept. Email: [email protected] & Mr. Satyendra Nath Kalita, Lecturer, Dept. of Zoology; Email: [email protected] B. Borooah College, Guwahati; Contact: Dr. Diganta K. Sarma, Lecturer, Dept of Physics. Email: [email protected] To run the forum smoothly, to make it more organised and to speed up activities, formation of a committee/team is essential. The combined
discussion of the moderators and senior members make the forum feel the importance of Advisors, co-ordinator, volunteer, webmasters etc. Of course it needs more discussion and will be approved by poll. 12. Guidelines for the forum The moderators formulated some guidelines for the forum which are as follow. These guidelines were kept open for discussion in the forum. With time and need the guidelines will be changed.
1. Anybody in the forum can start a meaningful and constructive discussion after discussion with moderators.
2. Comments from the individual members do not necessarily reflect the view of the forum.
3. No single moderator can take a crucial decision. All decision would be taken by the moderators unanimously or together with the group as majority.
4. One should not write any massage to the forum addressing some particular members. It should always start with Dear all / Dear esteemed members etc.
5. If one has to write a mail to a particular member she/he should write personal mail.
6. Everyone has the freedom to speak but that doesn’t mean that one should attack personally. Of course we do have differences. There can be debate or discussion, but it should always be a healthy one. One’s personal comment should be written in such a way that it reflects his/her view only. It should not touch other's sentiments/emotions.
7. Whenever we are in a forum, society, home, members should be sensitive / caring enough to their comments so that it does not hurt sentiment of any second members.
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
8
8. Members should not post greetings messages (Bihu wish, New Year wish etc) to the forum.
9. Members should post authentic news only. The source of the news should be authentic. No controversial news or comment should be posted to the forum.
10. Our main aim is to discuss science to generate science consciousness, scientific temperament, sensitivity, awareness and research for the benefit of the mankind in general and North East India in particular.
11. In severe cases, moderators can take a hard decision unanimously or majority wise (may be through poll). (This point needs to be accepted by all the members).
While sending request or while fulfilling request for articles please follow the following points.
• The forum has been formed to help each other. When a member requests articles/literature to forum, members of the forum are always happy to help the
person by supplying the articles. But at this stage we have to keep in mind that the article should be sent to the person who requested it, not to the whole forum as it creates lots of unnecessary mails in the message box of the forum. Moreover if it continues, it become a irritation also for many members.
• It is also the duty of the person who requests article to acknowledge the person who helped him/her. This can be done by writing ' Request fulfilled by......' in the subject area while composing the mail and write a thanking message in the main message board. Once this is done, then if some other members want to send the article will know about the status of the request. This will also help members in keeping mailbox clean. For example
• Moreover sending articles (copyright protected articles) to the open forum violates copyright act. So please send the article to the person who requests not to everybody through this open forum.
http://tech.groups.yahoo.com/group/northeast_india_research/ http://www.neindiaresearch.org/
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Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
9
SCIENCE NEWS Bipul Sarma, MIT Sources: www.sciencenews.org, New York Times, Scince Daily, MIT Tech News
1. Hurricane: Irene 2011 Hurricanes begin as
tropical storms over the warm moist waters of
the Atlantic and Pacific Oceans near the equator
(also called typhoons). As the moisture
evaporates it rises until enormous amounts of
heated moist air are twisted high in the
atmosphere. The winds begin to circle counter
clockwise north of the equator or clockwise
south of the equator. Around this center winds
moves at speed between 74 and 200 miles per
hour. As long as the hurricane remains over
waters of 79F or warmer, it continues to pull
moisture from the surface and grow in size and
force.
When a hurricane crosses land or cooler waters,
it loses its source of power, and its wind
gradually slow until they are no longer of
hurricane force less than 74 miles per hour. The
most recent hurricane Irene formed in the
southern Atlantic Ocean and Caribbean Sea.
Arlene, Bret, Cindy, Don, Emily, Franklin, Gert,
Harvey, Ten, Jose, Katia etc. are recent
examples of tropical storm. Irene storm slashed
directly across Puerto Rico, headed out to sea
north of the Dominican Republic and buffeting
the north coast with dangerous sea surge and
downpours. Irene grew into a category 2
hurricane when arrive United States coast from
category 3 at Turks, Caicos Islands, southeastern
Bahamas which could have been a monster.
Then moved to the Bahamian capital of Nassau,
Henry Vera, of Long Island, New York and
shifted towards New England areas.
2. Mind-Altering Microbes Recently researcher
from McMaster University in Canada reported
that probiotic bacteria have the potential to alter
brain neurochemistry and treat anxiety and
depression-related disorders. They demonstrated
that mice fed with Lactobacillus rhamnosus JB-
1 showed significantly fewer stress, anxiety and
depression-related behaviours than those fed
with just broth. Moreover, ingestion of the
bacteria resulted in significantly lower levels of
the stress-induced hormone, corticosterone.
These findings highlight the important role that
gut bacteria play in the bidirectional
communication between the gut and the brain,
the gut-brain axis, and opens up the intriguing
opportunity of developing unique microbial-
based strategies for treatment for stress-related
psychiatric disorders such as anxiety and
depression. The researchers also showed that
regular feeding with the Lactobacillus strain
caused changes in the expression of receptors for
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
10
the neurotransmitter GABA in the mouse brain,
which is the first time that it has been
demonstrated that potential probiotics have a
direct effect on brain chemistry in normal
situations. The authors also established that the
vagus nerve is the main relay between the
microbiome (bacteria in the gut) and the brain.
This three way communication system is known
as the microbiome-gut-brain axis and these
findings highlight the important role of bacteria
in the communication between the gut and the
brain, and suggest that certain probiotic
organisms may prove to be useful adjunct
therapies in stress-related psychiatric disorders.
3. Vocabulary Linked to Early Brain
Differentiation Researchers at the University of
Washington's report that the brains of babies
raised in bilingual households show a longer
period of being flexible to different languages,
especially if they hear a lot of language at home.
The researchers also show that the relative
amount of each language, English and Spanish,
babies were exposed to affect their vocabulary
as toddlers. The study is the first to measure
brain activity throughout infancy and relate it to
language exposure and speaking ability. The
bilingual brain is fascinating because it reflects
human abilities for flexible thinking. Bilingual
babies learn that objects and events in the world
have two names, and flexibly switch between
these labels, giving the brain lots of good
exercise. Previous studies show that between 8
and 10 months of age, monolingual babies
become increasingly able to distinguish speech
sounds of their native language, while at the
same time their ability to distinguish sounds
from a foreign language declines. E.g. they are
better at detecting the difference between "r" and
"l" sounds, which are prevalent in the English
language.
This is the same age when Japanese babies, who
are not exposed to as many "r" and "l" sounds,
decline in their ability to detect them. Babies
from monolingual (English or Spanish) and
bilingual (English and Spanish) households
wore caps fitted with electrodes to measure brain
activity with an electroencephalogram, or EEG,
a device that records the flow of energy in the
brain. Babies heard background speech sounds
in one language, and then a contrasting sound in
the other language occurred occasionally. For
example, a sound that is used in both Spanish
and English served as the background sound and
then a Spanish "da" and an English "ta" each
randomly occurred 10 percent of the time as
contrasting sounds. If the brain can detect the
contrasting sound, there is a signature pattern
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
11
called the mismatch response that can be
detected with the EEG. Monolingual babies at 6-
9 months of age showed the mismatch response
for both the Spanish and English contrasting
sounds, indicating that they noticed the change
in both languages. But at 10-12 months of age,
monolingual babies only responded to the
English contrasting sound. Bilingual babies
showed a different pattern. At 6-9 months,
bilinguals did not show the mismatch response,
but at 10-12 months they showed the mismatch
for both sounds.
4. Kill any Type of Virus Researchers at MIT's
Lincoln Laboratory has designed a drug that can
identify cells that have been infected by any type
of virus, and then kill those cells to terminate the
infection (published in PLoS ONE). Drug
against 15 viruses were tested and found
effective against all of them including
rhinoviruses that cause the common cold, H1N1
influenza, a stomach virus, a polio virus, dengue
fever and several other types of hemorrhagic
fever.
The drug works by targeting a type of RNA
produced only in cells that have been infected by
viruses. Todd Rider, inventor of this new
technology says this is a broad-spectrum
technology, could potentially be use to combat
outbreaks of new viruses, such as the 2003
SARS (severe acute respiratory syndrome).
When viruses infect a cell, they take over its
cellular machinery for their own purpose that is,
creating more copies of the virus. During this
process, the viruses create long strings of
double-stranded RNA (dsRNA), which is not
found in human or other animal cells. As part of
their natural defenses against viral infection,
human cells have proteins that latch onto
dsRNA, setting off a cascade of reactions that
prevents the virus from replicating itself.
However, many viruses can outsmart that system
by blocking one of the steps further down the
cascade. They combined a dsRNA-binding
protein with another protein that induces cells to
undergo apoptosis launched. Therefore, when
one end of the DRACO (Double-stranded RNA
Activated Caspase Oligomerizers) binds to
dsRNA, it signals the other end of the DRACO
to initiate cell suicide. However, if no dsRNA is
present, DRACO leaves the cell unharmed. Most
of the tests reported in this study were done in
human and animal cells cultured in the lab.
@ "If it's green or wriggles, it's biology. If it
stinks, it's chemistry. If it doesn't work, it's
physics..." — Science handy guide.
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
12
SPECTRUM
Srikanth Bolla, a 19-year-old sophomore
who is blind recently realized a dream when he
travelled to Hyderabad, India, to develop a
computer-training center for visually challenged
students. Last year, Bolla shared his dream to
create the center with staff at MIT’s Public
Service Center, which provided Bolla with a
fellowship and know how to make his dream
come true. He created a curriculum, then with
additional grants, he bought five computers,
rented a building, hired a faculty member, and
began 10-week computer classes. The center
now trains 30 blind high school students each
year, but with more funding, he hopes to add
more computers and more students. “Villagers
told my parents: ‘He cannot see. Let him die.’
My grandmother said, ‘No. One day he may be
useful to our family.’” He spent his childhood in
loneliness and always wanted to play sports and
games with other children, but they gave him no
attention. At the age of seven, one of his uncles
urged him to enroll in a school for the blind in
Hyderabad, a city 250 miles away from his
home. Soon after, Bolla made a commitment to
excel. “I worked hard, and I never looked back.”
First, he learned Braille, then English, then how
to use a computer. He won awards in debating,
creative writing, chess, and blind cricket. He
became the school’s top student. Thanks to
Bolla for his efforts, because of that all blind
students in India can study science beyond grade
10. Bolla, who now stars on a blind baseball
team in Cambridge, is working with the Board
of Education in the Indian state of Andhra
Pradesh to get his computer-training course
accredited. His other goals include expanding
the computer center to several locations in India,
finding jobs for trained students, and raising
money to educate more young people.
“My lifetime ambition is to become the
President of India,” says Bolla, who was a
member of Lead India 2020, a national
movement to train youth in leadership, human
values, and employment skills. The idea is that
the transformed 540 million youth would lead
India to become a developed nation by 2020. In
2010, Bolla received an excellence award from
that organization from the former President of
India. “I want to dedicate my life to community
and social service,” he says. “I want a place in
society where people look up to me as a role
model and great leader.”
I am glad to meet him at MIT campus
and around. I wish all his dream come through
and stay healthy.
composed by Bipul Sarma
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
13
INSTRUMENTS 1. Flash Chromatography [CombiFlash® Companion®]
Progyashree Goswami Ph. D. Student Natural Products Chemistry Division, NEIST, Jorhat. [email protected]
The Greek word chroma means ‘color’
and graphein means ‘to write’ is collectively
known as “Chromatography”. This is a
laboratory technique for the separation of
mixtures based on the difference in partitioning
between the two phases, i.e. mobile and
stationary. The mixture dissolved in a "mobile
phase" and passes through a “stationary phase”,
which separates the analyte in the mixture.
Every compound has a unique partition
coefficient result in differential retention on the
stationary phase that changes the separation.
There are two principal applications of
Chromatography. (i) Preparative
chromatography is used to separate the
components of a mixture and (ii) Analytical
chromatography is done with smaller amounts of
material to measure the relative proportions of
analytes in a mixture. Chromatography was first
used primarily for the separation of plant
pigments such as chlorophyll in the beginning of
the 20th century.
Before going into details I would like to
put a short note on the terms and phrases used in
chromatography. Analytes are the components in
the mixture or separated during analytical
chromatography. Chromatogram is the plot
between retention time (x-axis) versus signal (y-
axis) corresponding to the response created by
analytes that is proportional to the concentration
of the components. The equipment is known as
chromatograph. In chromatography which is a
physical method of separation consist of two
phases. The eluate is the mobile phase leaving
the column and the eluent is the solvent that will
carry the analyte. The second one is a stationary
phase which is immobilized on the support
particles.
The mobile phase moves in a definite
direction which may be a liquid, a gas, or a
supercritical fluid distinguishing them as Liquid
Chromatography (LC), Gas Chromatography
(GC) and Supercritical Fluid Chromatography
(SFC). Gas chromatography is always carried
out in a column, which is typically "packed" or
"capillary". Gas chromatography is based on
partition equilibrium of analyte between a solid
stationary phase (i.e. silica, alumina etc.) and a
mobile gas (i.e. Helium). GC is widely used in
the petrochemical, environmental monitoring
and remediation, and industrial chemical fields
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
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and extensively in chemistry research. However
in liquid chromatography the mobile phase is a
liquid and carried out either in a column or a
plane. The High Performance Liquid
Chromatography (HPLC) uses non-polar solvent
as normal phase and polar solvents in reverse
phase that consist the mobile phase. The
stationary phase normally includes irregularly or
spherically shaped particles, a porous monolithic
layer, or a porous membrane. Depending on
mobile phase HPLC can be of two types, (i)
more polar stationary phase than the mobile
phase (e.g. toluene as the mobile phase, silica as
the stationary phase) are termed normal phase
liquid chromatography (NPLC) and (ii) less
polar stationary phase (e.g. water-methanol
mixture as the mobile phase and C18 =
octadecylsilyl as the stationary phase) is termed
reversed phase liquid chromatography (RPLC).
RPLC has considerably more use. The
chromatographic techniques based on the
concept of bed shape can be two types, (i)
Column chromatography and (ii) Planar
chromatography. Planar chromatography can be
subdivided into (a) Paper chromatography and
(b) Thin layer chromatography (TLC). In
column chromatography the stationary bed is
within a tube with two open ends. A modified
version of column chromatography that the
solvent is driven through the column by
applying positive pressure was first introduced
in 1978 by W. Clark Still from Columbia
University, New York and is known as flash
column chromatography. This reduces the
separation time exceptionally to a great extent.
In planar chromatography the stationary phase is
present as or on a plane. The plane can be a
paper (paper chromatography) or a layer of solid
particles spread on a support such as a glass
plate (thin layer chromatography). Apart from
these common chromatographic techniques there
are several modified or integrated techniques
available depending on the type of the mixture
to be separated. Affinity chromatography, Ion
exchange chromatography, size exclusion
chromatography etc. In some cases it is possible
to direct a series of unresolved peaks onto a
second column with different physico-chemical
properties. Since the mechanism of retention on
this new solid support is different from the first
dimensional separation, it can be possible to
separate compounds that are indistinguishable
by one-dimensional chromatography. The
sample is spotted at one corner of a square plate,
developed, air-dried, then rotated by 90° and
usually redeveloped in a second solvent system.
This technique is known as the two dimensional
chromatography. Chiral chromatography is
another technique involves the separation of
stereoisomers. Only difference appears in the
stationary phase which is now made chiral.
Coming back to the discussion about
Combi Flash chromatography where normal
phase and reversed phase chromatography are
fully supported in all modern equipments. Isco
also offers empty RediSep columns that can be
packed with user-supplied media. Isco
CombiFlash systems are designed specifically
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
15
for organic purification customers. They are
compatible with organic solvents, hexane, ethyl
acetate, methanol, also chlorinated solvents,
including methylene chloride and chloroform.
The CombiFlash® Companion® personal flash
chromatography system can be controlled or
monitored from anywhere via internet with
plenty of modern facilities like e-mail
notification when separation is done, advance
automation and communication capabilities.
Fully touch screen operational with
optional solvent management module that
controls via sensor up to 4 solvents on line.
Companion uses precision packed RediSep® Rf
columns to yield more pure compound in less
time than any glass column or other disposable.
Columns from 4 grams to 330 grams are quickly
interchangeable with no additional hardware, for
fast, easy scale-up from milligrams to tens of
grams of purified sample. CombiFlash
Companion automatically senses the column
size and programs itself with optimal conditions
for that column. The column runs with flow rate
5 to 100 ml/min and pressure 50 psi (3.5 bar).
The software is specifically designed to meet the
needs of purification rather than analysis. We
can change the gradient any time during a run to
immediately modify the solvent mixture in real
run time. The primary applications are in drug
discovery, agrochemistry, petrochemistry, and
quick scale up of intermediate compounds from
milligram to several grams. CombiFlash
Companion’s standard features like (i)
parameters may be changed during the run, (ii)
automatic detection of column size, (iii) quick
conversion from normal to reversed phase
conditions, (iv) change solvents rapidly with the
optional solvent management module, (v)
sensory detection of remaining solvent volume
in each reservoir, (vi) tunable UV (Photodiode
array absorbance detector) wavelength from 200
to 360 nm, (vii) touch screen, desktop, or laptop
and control from anywhere using Internet, (viii)
reliable fraction collection uses Isco Foxy®
technology, (ix) auto rack-sensing eliminates
spilled compounds, (x) equipped with a vapor
sensor and an over-pressure sensor to meet
regulatory safety requirements.
Accessories like solvent management
module, fraction collector (External Foxy),
collection racks for additional tube sizes,
RediSep Rf prepacked columns (4g to 330g),
sample load prepacked, silica gel cartridges,
sample load empty cartridges etc. are provided a
hustle free smooth functioning of the instrument.
(Information culled from web sources)
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
16
2. Nuclear Magnetic Resonance (NMR) - Mega Hertz to Giga Hertz Dr. Ashim J. Thakur Assistant Professor, Department of Chemical Sciences, Tezpur University [email protected]
Nuclear Magnetic Resonance (NMR)
phenomenon is a manifestation due to
interaction of the magnetic moment
characteristic of every nucleus with an external
magnetic field. NMR is a powerful, versatile,
indispensable, nondestructive, contact free
analytical and diagnostic tool. The NMR
technique is based on the sensitivity of magnetic
properties, typically isotropic chemical
shieldings (ICS), to the chemical environment of
the nuclei. In this article, a very brief chronology
of developments of NMR is being given. At the
very beginning, NMR was used only for
chemical analysis: (i) Characterisation &
molecular structure determination; (ii) Content
& purity Checks: Detection/quantisation of
impurities, detection of enantiomers, analysis/
deconvolution of liquid mixtures, water content
measurement; (ii) Process & reaction
monitoring: suitable for studying molecular
dynamics (processes & reactions. It also helps
chemists in optimizing chemical processes & to
determine equilibrium constants, rate constants,
diffusion coefficients & to evaluate structural
properties.
NMR was mostly used in chemistry,
petroleum industry and food industry. There
were no medical applications. As soon as there
were developments both in hardware and
software, NMR tried to enter into other fields,
like biology and medical science. In 1971,
Damadian publishes and patents describing idea
for using NMR to distinguish healthy and
malignant tissues. At that time, no image
formation method proposed. In 1973, Lauterbur
described projection method for creating NMR
images. That marked the milestone for using
NMR in medical sciences. As superior to X-ray,
NMR has many advantages: (i) eliminate risk of
X-radiation, (ii) excellent spatial & contrast
resolution, (iii) detecting diseases at earlier
stages.
Following are some of the important
milestones in NMR starting from 1938
1938 - Discovery of magnetic properties of
nuclei Isadoor Rabi (Columbia University)
1946 - NMR first detected (protons in water) at
Stanford (Felix Bloch) and Harvard Edward
Purcell)
1952 - First commercial NMR spectrometer,
Varian HR-30
1962 - First Superconducting Magnet for NMR
1968 - Fourier Transform NMR invented
(Richard Ernst)
1969 - First Concept of MRI Scanners
1970 - FT-NMR instruments available
1971 - First 2D NMR Experiment – COSY (Jean
Jeener), applied by Ernst in 1975
1980 - 2D NOESY, Ernst & Kurt Wüthrich
1983 - Solution conformation of protein (Lac
repressor headpiece), Erik Zuiderweg, Robert
Kaptein, Kurt Wüthrich
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
17
2009 - First Gigahertz NMR Spectrometer
(AVANCE 1000).
AVANCE 1000 , the world’s first 1
Gigahertz NMR spectrometer with a record-
breaking 23.5 T standard-bore (54 mm)
superconducting NMR magnet delivered to the
new ‘Centre de RMN à Très Hauts Champs’ in
Lyon, France in July 2009.
Since the discovery, the impact of NMR is very
strong and thatswhy, Nobel Prize was awarded
to few scientists for their contribution in NMR:
1944, Isador Rabi, Physics, Discovery of
magnetic properties of nuclei
1952, Felix Bloch & Edwin Purcell discovery of
new methods for nuclear magnetic precision
1991, Richard Ernst methodology of high
resolution NMR
2002, Kurt Wüthrich determined 3D structures
of biological macromolecules by NMR.
2003, Paul Lauterbur & Sir Peter Mansfield
discoveries concerning MRI
Research in NMR era wise can be
considered as (based on molecular size):
1946-66 Small molecules (<30 atoms)
1966-75 <100 atoms, analytical tool for
Chemists
1975-85 <1000 atoms, small proteins,
nucleic acids cellular NMR
Magnetic resonance spectroscopy of
tissues and animals MRI,
Biomedical NMR
1985-95 <3000 atoms, Functional MRI
1995- large biomolecules
Following are the developments in
NMR technology wise:
Magnetic Fields (kGauss)
1H Frequency (MHz)
1946-60 7.0 - 23.4 30-100
1960-70 23.4 - 46.8 100-200
1970-80 46.8 - 117 200-500
1980-90 117 - 141 500-600
1990-00 141 - 187.9 600-800
2000- 221 900
2009- 235 1000
Over the years, NMR theory and
instrumentation have advanced symbiotically
supported by developments in hardware and
software. Multidimensional nuclear magnetic
resonance (NMR) spectroscopy is a widely used
tool in the study of biomolecular dynamics.
Modern NMR-based structural biology relies on
acquisition of multidimensional spectra.
In recent years, coupled instruments
have revolutionized the whole concept of
spectroscopy/ spectrometry and
chromatography. Coupled instruments are:
→ cheaper
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
18
→ can couple many techniques e.g. LC-MS-
NMR.
→ quite easy
→ routinely used as an analytical technique of
mixtures
→ high speed and use of deuterated solvents can
be minimised
→maintaining balance between chromatography
and spectroscopy/spectrometry
For an example, LC-NMR and LC-NMR/MS are
two very powerful analytical techniques for
resolving complex mixtures.“LC-NMR” is the
hyphenation of (i) an HPLC (reversed-phase)
separation, (ii) followed by “implied
chromatographic detectors” such as UV, RI, etc.,
(iii) followed by NMR detection (serially). The
following chromatographic variations have been
published (listing the year of the first
publication):
• GPC-NMR (gel-phase chromatography; 1981)
• SFC-NMR (supercritical fluid chromatography;
1988)
• CE-NMR (capillary electrophoresis; 1994)
• CapLC-NMR (capillary LC-NMR; 1996)
• CEC-NMR (capillary electrochromatography;
1998)
• SEC-NMR (size-exclusion chromatography;
1998)
Most recently, ‘miniature’ is the given
name to new technology, i.e. going smaller and
smaller. The World’s First Miniature NMR
Spectrometer Debuts at $20,000, developed by
picoSpin, LLC, Boulder, Colo.,
(http://www.picospin.com, picoSpin -45 nuclear
magnetic resonance spectrometer) with (i)
operating frequency, 45 MHz, (ii) 100 times
smaller and 10 times less expensive, (iii)
resolution better than 80 parts-per-billion, (iv)
resolves proton chemical shifts, (v) very small
sample volume of less than 40 micro liters, (vi)
liquid phase 1H NMR
To conclude, I want to quote the following
statement from Prof. Richard Ernst (Nobel Prize
in Chemistry, 1991): “Because there is hardly
any technique that is so informative for so many
different types of applications & because, no
other technique provides so much fun”
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
19
ARTICLE SECTION 1. Synthesis and Radical Polymerization of Adamantyl Methacrylate Monomers having Hemiacetal Moieties Dr. Balaka Barkakaty Research Associate University of Akron, USA [email protected]
The design strategy and synthesis of bulky,
hydrophobic and thermally stable adamantyl
methacrylate monomers with attached
hydrophilic and acid labile three different types
of alkyl (1°, 2°, 3°) hemiacetal side groups are
described. Free radical polymerizations of the
obtained monomers furnished the desired
polymers with high molecular weights. The
properties such as thermal stability, moisture
stability and acid sensitivity of the obtained
adamantyl hemiacetal ester homopolymers were
evaluated which showed strong structure-
property dependence. The bond dissociation
enthalpy of the obtained polymers depended on
the electronic effects of the type of pendant
hemiacetal ester side groups.
Photolithography using chemical
amplification technology has been a powerful
tool so far in the advancement of
microelectronic devices. The success story of
this emerging technology is aided by the
innovation of novel architecture to meet the
demands of properties required to fabricate
integrated circuits with continuously decreasing
feature sizes. It is largely the successful etching
of gradual smaller structures that have fueled the
continued performance increases in
microprocessors. The core chemical property
utilized in the present state of art for chemical
amplification is the acid sensitivity of the
protective group unit in the various copolymer
systems used as photoresists. The ideal features
for designing a novel protective group unit for
photoresist applications can be assigned as 1)
high acid sensitivity 2) good solubility in
common organic solvents 3) thermal stability to
withstand the pre and post exposure bakes 4)
high transmittance to the exposed wavelength of
irradiation 5) no out gassing during the
deprotection step and 6) high base solubility of
the deprotected part.
In the meantime, hemiacetal esters as latent
initiators have attracted enormous attention for
their wide applications in developing adhesives
and coating materials with simple procedures.
Their characteristic thermal stability (>160 °C)
coupled with high acid sensitivity also makes
them an attractive and potential candidate to be
used as the protective group unit part in
chemically amplified photoresist systems.
However, there are only few reports using
different hemiacetal ester moieties for such
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
20
photoresist applications. It might be due to the
high acid and moisture sensitivity of hemiacetal
polymers which raises serious concerns about
easy decompositions on exposure to stringent
conditions during resist formulations.
Incorporation of rigid and bulky adamantyl
groups to the side chain of various parent
polymers are driving great interests due to its
ability to tune the various chemical and physical
properties of the polymers such as thermal
properties, stiffness, glass transition
temperatures (Tg), solubility, high density,
resistance to oxidation, hydrophobicity, and
crystallinity. Therefore, the architecture of a
sophisticated molecular system such as one
having the highly acid sensitive hemiacetal ester
functionality tethered to the thermally stable
adamantane group might offer a plausible
solution in developing a new and high
performance protecting group unit for
chemically amplified resist systems with
contrast characteristics like high thermal and
moisture stability along with high acid
sensitivity.
Herein, we report the synthesis and free
radical polymerization of novel adamantyl
methacrylate monomers having various types of
alkyl hemiacetal ester moieties. Typically alkyl
types of hemiacetal esters were synthesized in
order to meet the requirement of imaging at 193
nm of light. Different types of alkyl vinyl ethers
(1°, 2°, 3°) were used to synthesize
electronically and sterically different hemiacetal
ester monomers in order to investigate structure-
property relationship of the polymers. The
fundamental properties of the polymers such as
moisture stability, thermal stability and acid
sensitivity were examined, which are essential to
evaluate their feasibility to function as possible
protective group units for photoresist
applications. It was found that all the polymers
show good thermal stability along with high acid
sensitivity. The comparative moisture and
thermal characteristics of the polymers
correlates to the electronic effects of the
hemiacetal ester moieties.
The adamantyl methacrylate monomers
with hemiacetal side groups were synthesized by
using 3-hydroxy-1-adamantane acetic acid as the
starting precursor. The synthesis of the
monomers follows a very simple and facile
synthetic pathway as shown in Scheme 1.
O
OH
OH
O
O
O
O
O
O
O
OO
OR
O
OH
OO
(i) (ii)
(iii)R =
1 23
4a-c
a
c
b
Scheme 1 Synthesis of adamantyl methacrylate
monomers with hemiacetal moietiesa aConditions: (i) triethylamine, methacryloyl
chloride, CH2Cl2, 0 °C- room temperature; (ii)
pyridine, H2O, room temperaturet; (iii) vinyl
ether, bis(2-ethylhexyl)hydrogenphosphate,
room temperature.
The presence of both carboxylic acid group
and hydroxyl group in the starting precursor 1
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
21
makes it feasible to attach two different
functional groups (anhydride and ester) with
varied reactivity in a single one pot reaction. The
more reactive anhydride group was then
selectively hydrolyzed in pyridine / H2O system
to obtain the adamantane acetic acid
methacrylate monomer 3. Finally, the
methacrylate type adamantane acid monomer 3
on reaction with various types of vinyl ethers in
presence of catalytic amount of bis(2-
ethylhexyl)hydrogenphosphate yielded the
desired methacrylate type adamantyl hemiacetal
ester monomers 4a-c in reasonable overall yields
(27-32 %). The free radical polymerization of
the obtained adamantyl methacrylate monomers
with hemiacatal side groups were carried out in
MEK using 3 mol% AIBN as initiator (Table 1).
O
O
OO
OR
O
OO
OR
On
AIBN(3 mol %)MEK, 60 οC, 16 h
R = a b c, ,
The hemiacetal monomers 4a-c showed
high polymerizability and good stability in the
reaction conditions as evident from their high
conversions and high yields without any
decomposition (Table 1).
Table 1 Polymerization of adamantyl
methacrylate monomers with different
hemiacetal ester side groups in MEK
entry
mon
omer
Con
v.
(%)a
Yie
ld
(%)b
Mw
Mn
PDIc
1.
2.
3.
4a
4b
4c
100
100
100
87
73
79
289,
000
475,
000
412,
000
93,0
00
134,
000
139,
000
3.
09
3.
54
2.
95
a: Confirmed by 1H NMR of the crude after 16 h
of reaction; b: Determined by the weight of the
dried polymer after precipitation in hexane; c:
Determined by SEC using CHCl3 as the eluent
and polystyrene as the calibration standards.
The obtained homopolymers showed high
solubility in common organic solvents like
MEK, CHCl3, toluene, DMF and THF. The
presence of bulky and high carbon containing
adamantyl groups is expected to impart rigidity,
good thermal and moisture stability to the
hemiacetal ester polymers which is an important
requirement for designing a photoresist with
high etch resistance and longer shelf life. On the
other hand, the presence of hydrophilic, highly
sensitive acid labile hemiacetal ester group as
the side chain of the bulky adamantyl moiety
can assist to meet the solubility parameter in
common organic solvents and is also expected to
improve the acid sensitivity of the resist
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
22
polymer. The thermal stability of the obtained
hemiacetal polymers were tested by TGA
analysis (Table 2).
Table 2 TGA analyses of the polymers
entry polymer %Td-5 (C)
1.
2.
3.
poly-4a
poly-4b
poly-4c
191
166
140
The difference in thermal stability of the
hemiacetal polymers poly-4(a-c) can be
correlated to the electron donating ability of
their corresponding alkyl groups with higher the
electron donation, lower is the bond enthalpy of
the ester bond and hence lower is the
corresponding Td. Since the order of electron
donation from an alkyl group varies in the order
3° > 2° > 1° therefore the order of thermal
stabilities for the obtained hemiacetal ester
polymers corresponds to the order poly-4c <
poly-4b < poly-4a.
To determine the moisture stability of the
hemiacetal ester polymers poly-4(a-c), solution
of each polymer in PGMEA were immersed in
more than 4900 equivalent of H2O at room
temperature and allowed to stir in the same
condition for 7 days.
The 1H NMR of the samples before and
after the study showed similar results to that
obtained for thermal stabilities. Poly-4a and
poly-4b showed no decomposition while poly-4c
decomposed under the conditions as evident
from the disappearance of the hemiacetal peaks
around δ = 6.0 ppm in the 1H NMR.
Figure 1 Dependence of bond dissociation energy on the electron donating ability of side groups in hemiacetal ester polymers.
Thus, poly-4a and poly-4b showed
exceptional stability to moisture while poly-4c
decomposed on exposure to high moisture
content due to lowering of the dissociation
enthalpy of the hemiacetal ester bond as a result
of higher electron donating effect of the attached
t-butyl group.
The acid sensitivity of the polymers poly-
4(a-c) was evaluated by addition of aqueous HCl
to polymer solution in THF. The dried polymers
obtained after 5 min reaction with an aqueous
solution of 5.0 M HCl in THF were found to be
insoluble in most of the common organic
solvents at normal temperature which made it
difficult to analyze the obtained materials by 1H
NMR spectroscopy. However, the solubility of
the polymers increased to some extent in DMSO
at higher temperature thereby making it feasible
to measure the 1H NMR of the decomposed
compounds in DMSO-d6 at 40 °C. Although the
intensity of 1H NMR signals of the polymers
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
23
after acid addition were not very distinct even at
40 °C but the clear absence of the hemiacetal
ester peaks around δ = 6.0 ppm justified the high
acid sensitive nature of the synthesized
adamantyl type hemiacetal polymers (Figure 2-
4). Furthermore, the clear difference in the IR
spectra of the dried polymers before and after
acid exposure measured at room temperature
reconfirms the decomposition of hemiacetal
ester bond and formation of acid group by its
typical broad absorption around 3300-2500 cm-1.
The insolubility of the polymer in common
organic solvents after acid addition might be the
result of crosslinking in the fully or partially
decomposed polymers via ionic interaction of
the polar acid groups or hydrophobic interaction
between the adamantyl moieties. However, the
weight of the dried polymers after treatment
with acid corresponded to the quantitative loss
of the hemiacetal ester side groups. Moreover,
the hemiacetal ester polymers were insoluble in
the standard developer solution for resist
formulation (2.38 % tetramethyl ammonium
hydroxide) before reaction with acid whereas the
polymers which were obtained after reaction
with acid showed high solubility in the standard
developer solution. The selective solubility of
the polymers in the developer basic solution
before and after reaction with acid also implies
the decomposition of the hemiacetal ester
moiety and formation of acid group as indicated
by IR spectroscopy.
OO
OO
OHCDCl3
δ 5.8
before acid addition (at rt)
after acid addition (at 40 οC)
DMSO-d6
1 02345678
012345678
Figure 2 1H NMR of poly-4a before and after
acid addition
OO
OO
OH
δ 6.0
before acid addition (at rt)
CDCl3
after acid addition (at 40 οC)DMSO-d6
1 02345678
012345678
Figure 3 1H NMR of poly-4b before and after acid addition
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
24
O
OO
O
O
Hδ 6.10CDCl3
before acid addition (at rt)
DMSO-d6
after acid addition (at 40 οC)
012345678
012345678
Figure 4 1H NMR of poly-4c before and after acid addition
In summary, adamantyl methacrylate
monomers having hemiacetal ester side groups
were synthesized. Free radical polymerizations
of the obtained monomers at 60 °C proceeded to
obtain the corresponding polymers with high
molecular weights in high yields. The obtained
hemiacetal polymers showed high acid
sensitivity with deprotection of the hemiacetal
groups when exposed to acid. The comparative
moisture and thermal stability of the bulky
hemiacetal ester polymers exhibited strong
structure-property inter dependence with the
bond enthalpy of the hemiacetal ester polymers
progressively decreasing with increase in
electron donation from the substituted ester
group. The easy synthetic pathway, high
polymerizability of the monomers, good thermal
and moisture stability of the homopolymers with
high acid sensitivity along with strong structure-
property dependence ideally fits into the
characteristic properties required for designing
potential protective group units for photoresists.
Note: Visit http://pubs.acs.org for experimental
details, synthesis, tests for moisture stability, test
for acid sensitivity and references.
@ A fact is a simple statement that everyone believes. It is innocent, unless found guilty. A hypothesis is a novel suggestion that no one wants to believe. It is guilty, until found effective. Edward Teller
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
25
2. Quantum Dots and its application in cancer research Dr. Mausam Kalita Research Associate Kansas State University, USA [email protected]
Introduction
During last decade and half, the research
in the field of quantum dots and its applications
has been explosive. The number of publications
in recent years is very suggestive of staggering
research in this area:
Publications on Quantum Dot Vs Publication Year
0
500
1000
1500
2000
2500
3000
3500
4000
2006
2005
2004
2003
2002
2001
2000
1999
1998
1997
1996
1995
1994
1993
1992
1991
1990
1989
1988
1987
Years
Num
ber o
f Pub
licat
ions
Figure 1 There is an exponential growth in the number of quantum dot related publications which gives an idea of its future applications (from Scifinder)
The discovery of quantum dots and its
high luminescence properties has inspired this
generation of scientists to explore its application
as bioimaging agents in detection of cancerous
cells and photosensitizing agents in
photodynamic therapy of cancer. 2006 Nobel
Prize winner Roger D. Kornberg is also part of
this ‘nanotechnology revolution’ and he has
devised a method of rigid, specific labeling of
proteins with gold nanoparticles1 and has started
working on to develop DNA-nanoparticle
conjugates.2 Quantum dots, the smallest regime
of nanoparticles, are semiconductor nanocrystals
of the size between 2 and 10 nm. They have the
size and composition tunable electronic and
optical properties with sharp, Gaussian emission
spectra. The following table shows the large
absorption coefficient of quantum dots across a
wide spectral range. These are definite
advantages of quantum dots over traditional
dyes as imaging agent in vivo and in vitro.
In this review, I would like to discuss
the application of quantum dots in cancer
research and its future promises in cancer
detection and therapy. I will also address the
issues of cytotoxicity of quantum dots at the end
of the review.
Quantum Dots: A Brief Overview
Quantum dots are semiconductors
composed of atoms from groups II-VI or III-V
elements of periodic table3 e.g. CdSe. CdTe, InP
etc. Their brightness is attributed to the
quantization of energy levels due to confinement
of an electron in a three dimensional box. The
optical properties of these dots can be
manipulated by a shell around it. Such dots are
known as core-shell quantum dots. e.g. CdSe-
ZnS, InP-ZnS, InP-CdSe etc. In this section,
different properties of quantum dots based on
their size and composition will be discussed.
Electronic and Optical Properties of Quantum Dots A quantum dot, also often called an
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
26
Table 1 Size and composition tunable properties of quantum dots (www.evidenttech.com)
artificial atom, represents the electron
confinement in a sphere smaller than its exciton
(electron-hole) Bohr radius which gives rise to
discrete energy levels. The band gap, ΔE,
between the valance and conduction band of the
semiconductor is a function of the nanocrystal’s
size. (Fig 2)
Figure 2 (a) electron confinement in a sphere, (b) a typical semiconductor with band gap, Δ E, between the valance band and conduction band. (by Dr.Viktor Chikan)
As the quantum dot size increases, ΔE
decreases and there is a red shift in the first
excitation peak. The emission can be tuned to
even the far-red and near-infrared (NIR) region
by increasing the size. Electronic excitations at
ΔE
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
27
short wavelengths are possible due to presence
of multiple electronic states as the quantum dot
size increases. 3 Large molar extinction
coefficients across a wide spectral range allow in
simultaneous excitation of multiple color Q-dots
with single light source. (Figure 3)
These dots have slightly lower quantum
yield than the traditional organic dyes but they
have much larger absorption cross-sections and
low rate of photobleaching. Molar extinction
coefficients of Q-dots are about 105–106 M-1
cm-1 which is 10-100 times larger than dyes.4,5
2.2. Type I and type II core-shell quantum dots.
Core-shell quantum dots have higher
band gap shells around their lower band gap
cores which emits light without any absorption
by the shell. This shell passivates surface
nonradiative emission from the core thereby
enhancing the photoluminescence quantum yield
and preventing natural degradation.5
The shell of the type I QDs has the
higher energy conduction band and lower energy
valance band than those of the core which
results in confinement of both electron and hole
in the core. e.g. CdSe/Zns (c/s), CdSe/CdS (c/s).
On the contrary, the shell of the type II QDs
have both conduction and valance bands lower
(or higher) in energy than those of the core.
Thus, the motions of the electron and the hole
are restricted to one dimension.6,7 e.g.
CdTe/CdSe (c/s), CdSe/ZnTe (c/s).6 Radiative
recombination of the exciton at the core-shell
interface gives rise to the type-II emission. Type
II QDs behave as indirect semiconductors near
band edges and therefore, has an absorption tail
into the red and near-infrared. This property of
type II QDs was employed for sentinel lymph
node mapping which will be discussed later in
this paper.8
Alloyed semiconductor Q-dots
(CdSeTe) have been reported; the alloy
composition and internal structure, which can be
varied, permits to tune the optical properties
without changing the particles’ size.9 These Q-
dots can be used to develop near infrared
fluorescent probes for in vivo biological assays
as they can emit up to 850nm.(Figure 4)9
Figure 3 A. Absorption Spectra and B. Emission Spectra of CdSe quantum dots. As the Q-dot size increases the absorption and emission maxima shift to longer Wavelength (or, red shift) (www.evidenttech.com)
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
28
Surface modification of quantum dots for biocompatibility Quantum dots are synthesized in organic
solvents and therefore, incompatible to use in
vivo and in vitro. Q-dot solubilization in
aqueous phase can be achieved by attaching
these dots with polar ligands. The tri-(n-octyl)
phosphine oxide passivated quantum dot surface
can be functionalized by adding a layer of
amphiphilic molecules such as cross-linked
polymer shells10, amphiphilic triblock
copolymers11 or phospholipids micelles.12
(Figure 5)13
Figure 4 Comparison of emission spectra of core-shell and alloyed CdSe0.6Te0.4 quantum dots. (3) and (4) are homogeneous and gradient alloyed dots respectively.9
TOPO exchange with other ligands such
as thiol,14 amine,15 containing molecules can
bring the Q-dot from the nonpolar organic to
polar aqueous layer (Figure 6).13 Use of
amphiphilic poly(acrylic acid) as a primary coat
on Q-dots followed by methoxy-terminated
poly-(ethylene glycol) (mPEG) coating makes
them biocompatible for in vivo imaging of
lymph nodes, liver, spleen and bone marrow of
mice.16 PEGylation of Q-dots reduces its uptake
by reticuloendothelian system and thereby
increases circulating lifetime. Other ligands such
as streptavidin to detect Her2 cancer markers,17
secondary antibodies to detect the integrin αv
subunit in SK-N-SH human neuroblastoma
cells18 and recognition peptides for protein
recognition18 are also used to link the quantum
dots. In the next section, I will discuss the role
of quantum dots in detecting cancer cells in
vivo.
Figure 5 Quantum dot functionalization to solubilize in aqueous buffer by adding amphiphilic polymer coat around TOPO passivated Q-dot surface.13
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29
Figure 6 Ligand exchange is another way to functionalize the Q-dots to enhance its biocompatibility.13
Quantum Dots in detecting Cancer Cells
There is no doubt that cancer is one of the
most life threatening diseases in the world.
According to WHO, cancer accounts for 13%
(7.6 million) of all deaths in 2005. The number
of deaths is increasing very fast and will touch 9
million in 2015 and 11.4 million in 203019, if
no major breakthroughs in cancer treatment can
be achieved. The early and effective detection of
cancer can reduce the deaths dramatically.
Luminescent quantum dots can detect the cancer
cells even when injected at the picomolar level.
In this section, I will discuss the reported in vivo
cancer targeting and imaging with quantum dots
in recent times.
First in vivo cancer targeting and imaging with quantum dots: passive and active targeting mechanisms20
The first ever in vivo use of ZnS
capped-CdSe quantum dots as fluorescent
probes to target human prostate cancer grown in
nude mice have been carried out by Shuming
Nie and his group.20 The surface of these dots
was made biocompatible by an amphiphilic
ABC triblock copolymer, multiple PEG
molecules and tumor antigen targeting ligands
cross-linked with the amphiphilic polymer
(Figure 7).20 Each Q-dot had about 200 TOPO
molecules, 4-5 triblock copolymers, 5-6 PEG
molecules and 5-6 antibody molecules.
Figure 7 Surface modifications of quantum dots for in vivo cancer targeting.20
The tumor targeting is achieved by both
passive and active targeting. Accumulation of
quantum dots sans any affinity ligands
(antibodies in this case) at the tumor sites
through enhanced permeability and retention is
the passive mode of targeting which is achieved
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30
since the tumors lack an effective lymphatic
drainage system (leaky tumors).20 The active
targeting involves the antibody-conjugated
quantum dots. They were used to target a
prostate-specific membrane antigen (PSMA).
(Figure 8)20
Figure 8 Passive and active modes of tumor targeting.20
When PSMA Ab conjugated Q-dots are injected,
strong and specific binding of these dots with
human prostate cell line, C4-2 (which expresses
PSMA on cell surface) is observed although
these dots couldn’t target the PSMA-negative
cell line, PC-3. Q-dots without PSMA Ab fail to
detect C4-2 cell line (Figure 9).20
Figure 9 Spectral image of PSMA Ab conjugated Q-dots in (a) a healthy mouse without any tumor and (b) in a mouse with human prostate cancer growing which is confirmed by the orange red fluorescent signal.20 When the probe brightness is compared between
green fluorescent protein (GFP) dye and Q-dots,
it is found that the emission spectra of the dots
undergo a large Stokes shift and hence, can be
detected at low signal intensities whereas GFP
emits in the region of background fluorescence
(autofluorescence) and therefore difficult to
distinguish. The detection of photons limited by
in vivo conditions demands very bright probes
with large absorption coefficients. The quantum
dots are the “best bets” since they can absorb 10-
50 times more light than the organic dyes at
same excitation wavelength.
Immunofluorescent labeling of breast cancer marker Her2 and tongue cancer marker p- glycoprotein (p-gp) with quantum dots.21,22
Immunoglobulin G (IgG) and streptavidin
conjugated CdSe-ZnS core-shell quantum dots
have been used by Wu et al.21 to target the breast
cancer marker Her2, which is, overexpressed on
the surface of human SK-BR-3 breast cancer
cells. These dots were also used for
simultaneous labeling of nuclear antigens and to
stain actin and microtubule fibers in the
cytoplasm. These SK-BR-3 cancer cells
incubated with monoclonal anti-Her2 antibody
were recognized by QD-IgG. The
immunofluorescent labeling of Her2 was also
successfully achieved by QD-streptavidin
conjugated with anti-Her2 antibody and anti-
human IgG.21
L-cysteine capped CdTe quantum dots
synthesized in aqueous solution were linked to
biotin and PEG to detect Tca8113/BLM cells
which overexpress p- glycoprotein (p-gp). This
was the first time when water-soluble quantum
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31
dots have been used as immunofluorescent
probe. The Q-dots conjugated to streptavidin,
which are, in turn, linked to anti-p-gp antibody,
have successfully stained p-gp on the surface of
Tca8113/BML cells. Confocal luminescence
images showed that there was target specific
binding on the Tca8113/BML cells (Figure
10).22
Figure 10 Overexpressed p-gp (a) and low expressed p-gp (b) is labeled by CdTe quantum dot as observed under confocal microscope.22 When the photostability of the Q-dots was compared with a organic dye, FITC; fluorescence of Q-dots remained unchanged even after 30 min whereas FITC luminescence became diminished over this time period. (Figure 11)22
Figure 11 Photostability of Q-dots (the top row) conjugated to Tca8113/BLM tongue cancer cells remain unchanged when fluorescence was observed in the interval of 5 minutes. The bottom rows show the emission of FITC conjugated signals.22
3.3. Near infrared emitting type II quantum dots for imaging and image-guided cancer surgery.23, 24 Near infra-red emitting (NIR) type II
quantum dots (10 nm in diameter) have been
used in pico molar level to map sentinel lymph
node, 1cm deep in the skin, for successful
imaging guided cancer surgery.23 Polydentate
phosphine coating of these CdTe(CdSe) core-
shell Q-dots was responsible for their solubility
in serum and for enhanced brightness as fluence
rate increased showing no deterioration in
fluorescence emission. On the contrary, The
conventional NIR fluorophores, such as
IRDye78-CA, photobleach when the fluence
rates exceeds their photobleaching threshold.
The first in vivo targeting and imaging of
peptide based NIR Q-dots has been reported.24
Arginie-glycine-aspartic acid (RGD) peptide-
labeled CdTe(ZnS) core-shell Q-dots have been
used to image integrin αvβ3-positive tumor
vasculature. Integrin αvβ3 is overexpressed in
some cancer cells such as breast, ovarian and
prostate and in almost all tumor vasculature.
Inhibition of integrin αvβ3 requires its precise
detection and NIR Q-dots have great potential in
its imaging and image-guided surgery of the
cancer cells. In vivo NIR fluorescence imaging
of U87MG tumor-bearing mice shows the
precise location of the tumor cell after injection
of 200 pmol QD705-RGD (emission maximum=
705nm) (Figure 12) 24
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32
Figure 12 U87MG tumor cell mapping by QD705-RGD (left) and QD705 (right).24
Quantum dots and cytotoxicity
Though quantum dots are supposed to
revolutionize clinical diagnostics and
therapeutics, these nanocrystal semiconductors
are not without damaging effect inside the cell.
The heavy metal toxicity is the impediment in
using Q-dots as most potent fluorescent probes.
In this section, I will review the cytotoxicity
studies of Q-dots in vitro and in vivo.25,26
Studies have shown that synthesis and
ligand exchange of CdSe Q-dots with
marcaptoacetic acid in an inert atmosphere made
them nontoxic. However, exposure of the Q-dots
to air before ligand exchange and to UV light
after ligand exchange made these Q-dots
cytotoxic. This may result from the oxidation of
surface of CdSe Q-dots to SeO2 and Cd2+ ions.
(Figure 13)25 The toxicity depended linearly
upon the exposure time of these dots to UV light
and dose of the dots injected.
Figure 13 Surface oxidation of CdSe catalyzed by air and UV light.25
The surface coating of CdSe by ZnS,
DHLA, BSA and polyacrylate reduces the
surface oxidation significantly. It was found that
ZnS capping can stop air oxidation of the
surface though it failed to eliminate UV assisted
oxidation of the CdSe surface (Figure 14).25 The
surface oxidation can be reduced to almost zero
by adding more layers to the Q-dots which is
also a requirement to enhance biocompatibility.
It is more difficult to stop UV light or
inflammatory response assisted CdSe surface
oxidation in vivo. Surface modifications by
using polymer coating or lipid-micelles with
protein cross-linking may successfully protect
the surface from deterioration. More research in
this field will make quantum dots an appealing
replacement of the organic dyes.
Figure 14 ZnS capping almost eliminates the surface oxidation of CdSe and thereby the cytotoxicity due to Cd2+ ions.25
Conclusion
The promise of quantum dots in the field
of cancer diagnostics and therapeutics is
enormous. These dots can detect cancer cell
markers by bioimaging and remain stable for a
long time, thus, they are to replace the dyes
which suffer from photobleaching in the living
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33
system. The biggest advantage of quantum dot is
their size tunable optical properties and
inexpensive synthesis in the lab. Though a few
questions of safety issues have to be addressed
before its adoption in human trials, a wide-
spread revolution can be envisioned in
biosensing and analytical detection in coming
years. In other words, quantum dot are going to
change the perception of clinical world.
Reference
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3. The Flying Jewel of Nature- Butterfly Nabanita Das Ph. D. Student NEIST, Jorhat, India Email: [email protected]
Introduction North-East India is a part of
vavilion centre of biodiversity and holds a large
number of rare species that are now under
serious threat. North-East India comprising 8
states including Assam represents one of the few
hot spots of biodiversity of the world. Insect
comprises more than half of earth’s diversity of
species (May, 1992). Healthy biological
communities depend on insects as pollinators,
seed dispersers, herbivores, predators and prey.
Butterflies are regarded as one of the best
taxonomically studied groups of insect
(Robbins, 1997). They have been studied
systematically since the early 18th century and
about 19,238 species are documented worldwide
by 1998(Heppner, 1998). India possesses 1501
species of butterflies (Kunte et al.1999) out of
which northeast India accounts for nearly a two-
third (962 species) (Evans,1932) of the species.
Their admirable beauty of this flying jewel has
been admired since human civilization.
Butterflies are free living; they go wherever they
please and whenever they please. They are the
messenger of nature, not only by adding
brilliance to our surroundings but also
pollinating flowers and expressing the
healthiness of our community. Butterflies
exhibit polymorphism, mimicry and
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34
aposematism. Some, like the Monarch, will
migrate over long distances. Some butterflies
have evolved symbiotic and parasitic
relationships with social insects such as ants.
Butterflies are important economically as agents
of pollination. The caterpillars of some
butterflies eat harmful insects. A few species are
pests because in their larval stages they can
damage domestic crops or trees. Butterfly & Moth The butterfly and moth,
included in the order Lepidoptera means the
wings with scales. The butterfly and moth
complete their lifecycle in 4 distinct life stages
i.e. eggs, larva (caterpillar), pupa and adult.
Although both group of insects are included in
the same order, but they bear distinct difference
in all life stages of the insects. The evolutionary
root of both group of insects are same but on the
way of evolution the divergence of butterfly
group has appeared. The emergence of butterfly
and their rapid modification subsequently with
time, make them fit in survival for which
butterfly could be designated as one of the
modern group of insects. With time, the butterfly
is losing their phylogenic origin property and
subsequently gaining new qualities, essential for
better survival in the changing nature. But still
some dominant quality of their origin is
remained on their body for which no distinct
difference could be drawn in between butterfly
and moth. The members of Hesperiidae are
better representative of this ambiguity which
possesses both the characters of butterfly and
moth, though of course included under butterfly
family. These differences are, however,
superficial. The butterflies are classified into 5
families. Among the families, diversity is more
in the families Lycaenidae and Nymphalidae,
comprising 6000 species each. The member of
Papilionidae is the most acclaimed butterfly for
the collector for their extra large size and unique
beauty.
A brief introduction of their Life Cycle
Butterfly completes their life cycle into 4 stages
i.e. egg, larva, pupa and adult.
Image Life Cycle of Palm Fly Butterfly on it host Plant
About the Egg, Larva or Caterpillar, Pupa
and Adult The adult female after mating, lays
their egg on the undersurface of the tender
leaves of host plants. In general eggs are laid
singly or in group of 5 to 10. During laying, the
mother always consider the availability of larval
food for the young. The choice of tender leaves
for egg laying assures the mother about the
longevity of the leaves for a longer period with
available soft tissues up to the emergence of
potential young. The limited number of eggs
deposited per leaf (single or 5 to 10) also
provides opportunity for the young in feeding
the resources without any competition. Further,
tedious effort that is undertaken by the mother in
finding suitable host plants for egg laying gives
the larvae better opportunity to survive.
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35
Image Different types of Eggs of Different Butterflies
The tiny caterpillar just after emergence, satiate
their appetite by feeding the egg shell. The egg
shell, which is rich in nitrogenous nutrients, is
like vitamin tablets for the tiny caterpillar. By
feeding the egg shell, they could remain turgid
for another 6 to 7 hours and during this time
they could search the required host plants, host
parts (if necessary). The grown up caterpillars
are voracious feeder. They generally feed on the
leaves of the host plants from the edge, in a way
of curve. Their harvested nutrients during larval
stages, also serve as the resources for survival
and reproduction during adult. The caterpillar
undergoes 5 to 6 moults and each successive
moults facilitate to increase their body size.
Caterpillars mature through a series of stages
called instars.
Image Larvae of different butterfly species
When the larva is fully grown, hormones such as
prothoracicotropic hormone (PTTH) are
produced. At this point the larva stops feeding
and begins "wandering" in the quest of a suitable
pupation site. The pupae of butterfly are naked
and optect in form. The mature larvae take
position on twigs or undersurface of the leaves
for formation of pupa. In absence of suitable
pupal site, they migrate to nearby area for
pupation. The pupae either remain hanging
freely by sticking their cremaster on the leaf
surface or partially so for the upper side of the
body by a body band. The pupae have little or no
protection device as in larvae and adults. Even
they cannot move like larvae and adults.
Therefore, camoflaguing their body with the
background is very commonly seen in pupae and
very often they escape from the sight of
predators.
Image Common Earl (Adult Female) with its Pupa after and before adult emergence After pupation is completed, the adult butterfly
emerges with speckled hues in their wings. The
adult, sexually mature, stage of the insect is
known as the imago. As Lepidoptera, butterflies
have four wings that are covered with tiny
scales. The fore and hind wings are not hooked
together, permitting a more graceful flight. The
adult butterfly has feeding upon the nectar of the
flowers.
Image Some butterfly species nectaring on their host plants The longevity of adult butterfly varies with
species to species. Thus the longevity ranges
from 5 days to 1 years. Smaller the size less is
the longevity. Likewise, the larger butterflies
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N. E. Quest; Volume 5, Issue 2, July 2011
36
survive for many days – even months.
Butterflies are host specific i.e specific butterfly
depends on specific host plant for their food in
larval and adult stage, all the species of butterfly
not feed upon all the species of plants. Each
species of butterfly has its own hostplant range
and while some species of butterfly are restricted
to just one species of plant, others use a range of
plant species, often including members of a
common family.
Image Some Common Larval Host Plants of Butterflies
Diversity in North-East India The 1st major
account on the butterflies of Assam was
compiled in a series of papers by Butler (1879),
Doherty (1889), Elwes (1891) & Swinhoe
(1893). The biogeography of the Assam
butterflies was discussed by several authors
including Bingham(1907),Evans(1932),
Talbot(1939),Parsons&Cantlie(1947),Wynter-
Blyth(1957), Gupta & Shukla(1988). The State
of Assam in NE-India is home to a rich butterfly
fauna. Some reports of butterflies in certain
areas of northeast India have also been published
by various workers (Borang et al., 2008;
Talukdar and Sarma,2010; Choudhury and
Ghosh,2009; Bhuyan et al.,2005;
Greeshma,2010). Large scale deforestation &
habitat fragmentation have led to the decline
several butterfly populations in the region and
many species, which were listed as common
during the early part of the 20th century, have
now declined rapidly throughout much of their
range. Our campus (CSIR-NEIST, Jorhat) itself
possess more than 70 species (Bhuyan et al.,
2005). Very little work has been done regarding
its diversity in Assam. We found more than 70
species of butterfly in Garampani WildLife
Sanctuary too, situated at the border of golaghat
and karbi angling district of Assam covering 6
sq K.M.s of area, during our study covering 4
seasons. And existence of these species also
indicates that these areas also possess their host
plants too.
Image Some Butterfly Species from Garampani Wildlife Sanctuary, Assam
Importance of Butterfly As butterflies are
extremely sensitive to changes in vegetation
composition and structure, butterfly assemblages
may be used to characterize different habitats
(Erhardt, 1985). Within the ecological
communities insect comprise a large proportion
of the biomass and are critical conduits of
energy through the system (Battist,1988).
Butterflies are one of the most important food-
chain for birds, reptiles, spiders and predatory
insects. They are also good indicator of
environmental changes. They are also good
pollution indicator.
Now a days, butterflies encounter a
number of threats viz. habitat destruction,
fragmentation and degradation due to expansion
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37
of agricultural land, industrial set-up, extensive
monoculture tree or tea-plantation, grazing,
forest fires, application of pesticides and
weedicides, air pollution etc. As the butterfly has
a great role towards the environment, so we
should take some measures to conserve such an
important component of our ecosystem, through
legal protection by creating protected areas like
national parks and sanctuaries and thus
protecting butterfly habitats, research and
management, nature education and awareness
among the public and plantation of more larval
and nectaring host plants. Butterflies are living
creature of our earth and they also have equal
right to live as we human do.
4. Next generation optical tools for biomedical applications Dr. Bhargab Das Research Associate, Physics Department University of Massachusetts Boston, USA Email: [email protected] Modern medicine and therapy rely on early and
precise diagnosis to permit localized and
specific treatments. In particular imaging the
various epithelia at the surface of organs inside
or outside the body is of particular importance
for the early detection of dysfunction and
lesions. Three-dimensional (3D) imaging of
complex microscopic and sub-microscopic
processes in tissues, down to cellular level, is
still a challenging issue. Rapid, sensitive, non-
invasive methods with high resolution capability
are thus needed for diagnosis of lesions or tissue
dysfunctions.
Optical microscopy has been a major tool for
biological and biomedical imaging for centuries
and various related technologies have been
developed over the past years [Science 2003,
300, 82]. Although other techniques such as
electron microscopy offer significantly better
spatial resolution, light microscopy occupies
central role in biomedical science because of its
ease of use and the potential for being
noninvasive, live cell imaging. In particular,
since the invention of the phase contrast
microscope by Frits Zernike, for which he was
awarded Nobel Prize in physics 1953, this
instrument and its related techniques have been a
cornerstone of every cell biology laboratory
[Science 1955, 121, 345; Research (London)
1955, 8, 385; Opt. Express 2010, 18, 4717]. In
spite of their enormous value as non-invasive
investigational tools, however, traditional phase
methods such as phase contrast and differential
interference contrast (DIC) are inherently
qualitative and lack sub-cellular specificity. At
the same time, extrinsic contrast techniques such
as fluorescence microscopy offer molecular
specificity and high spatial resolution.
Nevertheless, these methods generally require
alteration or modification of cellular and
molecular structure including cell
permeabilization, chemical or immune-staining,
or genetic modification, and are therefore less
than ideal for characterization of live cells in
their native physiological state.
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38
Digital Holographic Microscopy Various
biological samples, including live cells, are quite
transparent under visible light illumination and
behave essentially as phase objects. Phase
objects do not provide contrast with their
environment and alter only the phase of the
incident light wave. The optical thickness of
such objects generally varies from point to point
due to changes either in the refractive index or
sample thickness or both. Since our eyes or a
digital camera cannot detect these phase
changes, such biological specimens are invisible
with conventional bright field microscopes.
Retrieving the phase information from biological
structures in a quantitative manner allow for a
variety of novel applications in the biological
investigation of structure and dynamics.
Quantitative phase provides unique information
about unstained live cells. Light travels slower
in the cell than in the medium due to the
relatively higher refractive index of cells, which
causes a relative phase delay of light in the cell
with respect to that in the medium. The
magnitude of the phase delay is approximately
proportional to both thickness and the average
refractive index of the specimen. Specifically,
the physical relation between phase and optical
path is given by
,
where ; is the phase delay induced by
the cell, the cell height map, is
the average refractive index of cell, is
the refractive index of medium, and is the
wavelength of the light source in air. Over the
past several years, significant progress has been
made in quantitative phase microscopy methods
that promise to overcome limitation of
traditional phase microscopy. In particular, full-
field quantitative phase microscopy techniques
that provide simultaneous information from a
wide field of view offer an ideal experimental
approach to characterize spatial and temporal
behavior of biological specimens. Digital
holographic microscopy (DHM) is a quantitative
phase microscopy technique based on
interferometry methods which enables
simultaneous imaging of amplitude-contrast and
quantitative phase-contrast images of biological
specimens such as cellular bodies [Appl. Opt.
1999, 38, 6994; Opt. Lett. 1999, 24, 291; Opt.
Lett. 2010, 35, 3426; SPIE Reviews 2010, 1,
018005; Opt. Lett. 2005, 30, 468]. DHM has the
advantage of being non-invasive thanks to its
low requirement of light intensity, and of
providing high contrast images without requiring
any extraneous dye, making it particularly
suitable for live cell imaging. Quantifying the
optical phase shifts associated with biological
structures reveals information about the
morphological and dynamical properties at the
nanometer scale.
Principle of digital holographic microscopy
Digital holography is based on the classical
holographic principle, with the difference that
the hologram recording is performed by a digital
image sensor, e. g. CCD or CMOS sensor array
[Appl Opt 1994, 33, 179]. The subsequent
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N. E. Quest; Volume 5, Issue 2, July 2011
39
reconstruction of the holographic image that
contains the information about the object wave
is carried out numerically with a computer.
Figure 1 depicts the schematics of an “off-axis”
setup for DHM based on a Mach-Zehander
interferometer. A linearly polarized light from
an Ar-Kr laser (λ=488 nm) is first spatial filtered
and collimated. The beam then divided by a
beam splitter (BS1). The sample is illuminated
by one beam through a condenser (C). A
microscope objective (MO) collects the
transmitted light and forms the object wave (O),
which interferes, in off-axis geometry, with a
reference wave R to produce hologram intensity
(IH). The reconstruction of the digitally recorded
holograms is performed numerically in a
standard computer. A detailed procedure for
digital hologram processing in particular for
phase reconstruction of the object wave is
described. Holograms acquired by the CCD are
first submitted to a procedure of apodization and
filtered in the Fourier plane in order to remove
the zero order and the twin image. Then, the
resulting hologram (IH) is multiplied by a digital
reference wave (RD) that simulate an
illumination wave and a propagation calculation
in the Fresnel approximation is applied to
reconstruct a focused image of the specimen in a
plane of co-ordinates . In summary, the
reconstructed wavefront , is
computed according to the following expression:
........1
Where, k, l, m, and n are integers (-N/2 ≤ k, l, m,
n ≤ N/2 ), FFT is the fast Fourier transform
operator, A= exp(i2πd/λ)/( iλd), Δξ and Δη are
the sampling intervals in the observation plane,
Δx and Δy are the pixel size of the CCD.
Figure 1 Basic configuration of a DHM for transmission imaging. BS, beam splitter; C, condenser lens; M, mirror; MO, microscope objective; O, object wave; R, reference wave. Inset: a detail showing the off-axis geometry at the incidence on the CCD As seen from the above equation for phase-
contrast imaging, the digital hologram has to
be multiplied by a digital reference wave RD,
which must be an exact replica of the
experimental reference wave R. If we
assume that a perfect plane wave is used as
reference for hologram recording, RD is
calculated as follows
........2
where AR is the amplitude and kx , ky are the
two components of the wave vector that
must be adjusted such that the propagation
direction of RD matches as closely as
possible to that of the experimental
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
40
reference wave. Further, Φ(m, n) in Eq. (1)
is a digital phase correction applied to
compensate for the wave front curvature
induced by the objective lens. This digital
phase correction is computed according to
the expression of a parabolic wave front and
is given by
where parameters d1 and d2 define the field
curvature along respectively and digitally
adjusted to correct the defocusing aberration due
to the objective lens. Since is an array
of complex numbers, we can obtain an
amplitude contrast image by calculating the
intensity,
and a phase-contrast image by calculating the
argument,
An example of microscopic imaging DHM is
shown in Figure 2. A USAF (U. S. Air Force,
1950) resolution chart constitutes the amplitude
object. Fig. 2(a) shows a digital hologram
recorded with the experimental setup presented
before with a MO of magnification 20×, with the
details shown in the inset where the interference
fringes are visible. The reconstructed
holographic image is shown in Fig. 2(b)
depicting clearly resolved images of Group 6
and 7 of the resolution chart. The finest structure
shown is the sixth element of Group 7, and the
corresponding width of the line is 4.4 µm. In
order to demonstrate the imaging capability for
phase objects, we performed experiments on
human airway smooth muscle cells cultured on a
4 kPa stiffness Polyacrylamide gel. Figure 2(c)
shows the bright field image of the cells and as
expected it is not possible to extract any
information about the cells from this image.
Figures 2(d) shows the reconstructed wrapped
phase profile of the cells using DHM and Figure
2(e) shows the unwrapped quantitative phase
contrast image of the cell. The vertical bars
represent the phase values in radians. The image
clearly shows the shape of the cell. The cell
thickness can be determined from the
quantitative phase contrast image (representing
the optical path length changes effected by the
cells in comparison to the surrounding medium)
by taking into account the integral cellular
refractive index and the refractive index of the
cell suspension medium.
The specific advantages of DHM are-
1. DHM provides quantitative measurement of
the optical path length distribution that allows
semitransparent samples, such as living cells to
be described with diffraction limited transverse
resolution and sub-wavelength axial accuracy.
This quantitative information can be employed
in order to recover biological parameters such as
intracellular refractive index or dry mass [Opt.
Express 2005, 13, 9362].
2. DHM provides a marker-free topographic or
morphological analysis, which enables a non-
invasive dynamic detection of deformations and
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
41
movements in cell biology. For this reasons,
DHM is particularly suitable for investigations
of dynamic processes in the field of life cell
analysis with high potential for applications in
basic research as well as for commercial
utilization e. g. in the fields of pharmacy and
tissue engineering [Biomed. Opt. Express 2010,
1, 414; Opt. Lett.2007, 32, 1572; Phys. Rev. Lett.
2006, 97, 218101, Blood cells Mol. Dis. 2008,
41, 10; Opt. Express 2009, 17, 12031].
3. The capability of modular approach of DHM
opens up prospects for integration into various
existing commercial microscopy systems as well
as for combined measurements with other
established methods such as fluorescence
microscopy. Thus comprehensive information
about any biological specimen can be obtained
by combining the optical imaging modalities of
QPM and fluorescence microscopy [J.
Biophoton. 2010, 3, 432; Opt. Express 2006, 14,
8263].
4. DHM offers new opportunities that are likely
to fulfill the current challenges associated with
three-dimensional imaging (3D) of complex
microscopic and submicroscopic processes. It
has been shown that, when this technique is
combined with the use of light with low
temporal coherence, it is possible to perform
wide-field optical coherence tomography
(WOCT) of the specimen [Opt. Lett. 2006, 31,
178; Opt. Lett. 2009, 34, 1243]. DHM can also
be efficiently combined with optical diffraction
tomography (ODT) to reveal the three-
dimensional internal distribution of cellular
components such as 3D spatial distribution of
refractive index (RI). Pioneering works have
established the theoretical basis of
reconstructing the 3D scattering potential of
weakly scattering objects, by recording the
waves scattered from the different directions of
parallel illumination. The main advantages of
DHM for complex diffracted wave retrieval is
that only a single hologram is needed for each
orientation of the specimen, leading to short
acquisition time and low stability requirements
for the system. The knowledge of the 3D RI
spatial distribution of a cell leads to invaluable
information concerning the distribution and the
optical properties of the intracellular organelles
a b c
d e Figure 2 An example of microscopic imaging using DHM. (a) Digital hologram of a USAF resolution chart (inset shows the interference fringes); (b) Reconstructed holographic image; (c) Brightfield image of human airway smooth muscle cells cultured on a 4 kPa stiffness Polyacrylamide gel; (d) Reconstructed wrapped phase profile of the cells; (e) Unwrapped quantitative phase image of the cell. The vertical bar shows the phase values in radian.
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011
42
INVITED ARTICLE (a) Industrialization, Capitalism and Communism Pradyumna Kalita Zarb business school of Hofstra University in New York
The industrial revolution had started
from around 18th century up to 19th century.
This revolution has changed the socioeconomic
condition of the whole world, especially Europe
and North America. Then it spread to all over
the world. In the Industrial revolution, Adam
Smith, Karl Marx and F.W. Taylor have
numerous influences.
In the book “wealth of nation”, Adam
Smith refurnished the idea division of labor
(Plato, David Hume already talked about
Division of Labor) and it represents mainly
qualitative increase in productivity. This idea
relates primarily to the specialization of the
labor force. It emphasized on three key points
as how to increase the quantity of work,
1. Incease the dexterity of each and every
workman The division of labor reduces every
man’s work to one simple operation, and by
making this operation the sole employment of
his life and it will increase the dexterity of the
workman significantly.
2. How to save time which is commonly lost in
passing from one work to another “Adam
Smith suggests that it is impossible to pass very
quickly from one kind of work to another that is
carried on in a different place, and with quite
different tools. A country weaver, who cultivates
a small farm, must lose a good deal of time in
passing from his loom to his field and from the
field to his loom. When the two trades can be
carried on in the same workhouse, the loss of
time is no doubt much less.” [Smith, A. (N. d.).
The Wealth of Nation, Glasgow ed., pp. 17-19,
N. p.: Oxford University press.]
3. Adam Smith saw the importance of
machines and that’s why he said Invention of
new machines would be more effective
According to Smith, the use of the machines in
manufactures made the work more efficient.
F.W. Taylor is regarded as the father of
scientific management. The main aim of the
scientific management was to improve economic
efficiencies in the industry. This was one of the
revolutionary thought in the industrial
revolution. In the 1st chapter of the book The
Principles of Scientific Management, F.W.
Taylor found that there are three reasons why
workers are inefficient and the reasons are
inefficient rule of thumb methods, Defective
management systems and wrong belief that a
material increase in the output of each man or
each machine in the trade would throw people
out of work. In the 2nd chapter F.W. Taylor
explained how to solve those problems through
Newsletter of North East India Research Forum
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43
his principles of scientific management. They
are as follows ---
1. Replace rule of thumb work methods with
scientific study methods.
2. Scientifically select and then train, teach, and
develop the workman.
3. Provide detailed instruction and supervision
of each worker.
4. Divide the work between managers and
workers, managers will apply scientific
management principles to planning the work and
the workers actually perform the tasks.
Karl Marx’s reaction on industrial
revolution and criticize the concept of
capitalism. He believed that alienation is a
systematic result of capitalism and in the long
run, it won’t create harmony in the society. Karl
Marx’s identified there were four types of social
alienation of labor under capitalism --- they are
1. Alienation of the worker from the work he
produces, from the product of his labor The
product doesn’t belong to the workers. The
capitalist class determined the product’s design
and the manner in which it is produced. Both
intellectual and creative workers will be under
the control of capitalist.
2. Alienation of the worker from working,
from the act of producing itself Labour is
forced and doesn’t satisfy worker. According to
Marx, one's species being is fulfilled when it
maintains control over the subject of its labour
by the ability to determine how it shall be used
directly or exchanged for something else. In
Capitalism economy, capitalist removes the right
of the worker to exercise control over the value
or effects of his labor.
3. Alienation of the worker from himself
Industrialization gave capitalist more power and
eventually progress to a state of near-total
mechanization and automation of productive
processes. During this process, the newly
dominant Bourgeoisie Capitalist class would
exploit the Industrial working class.
4. Alienation of the worker from other
workers or producers Capitalism reduces labor
to a commercial commodity to be traded on the
market, rather than a social relationship between
people involved in a common effort for survival
or betterment.
[According to Karl Marx species-being' or
'species-essence' means this is that humans are
capable of making or shaping their own nature
to some extent.]
Pradyumna Kalita graduated from the
Gauhati Commerce College in 2002 with a Bachelors
degree in Management and Post Graduation from
Dubin Business School (Ireland) in 2007. Since post
graduation Pradyumna has held several positions in
bank, telecommunication and marketing. He then
joined Zarb business school of Hofstra University in
New York in 2011 for his masters in business
management. He keeps his passion towards
travelling, photography, social activity, soccer and
cross cultural interest.
Newsletter of North East India Research Forum
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44
(b) Growth of Single Crystals from Hydrothermal Synthesis Dr. Prashanth W. Menezes Lehrstuhl fürAnorganische Chemie mit Schwerpunkt Neue Materialien Technische Universität München,Germany
Introduction The hydrothermal
technique has been most popular, garnering
interest from scientists and technologists of
different disciplines, particularly in the last
twenty years. The term hydrothermal is purely
of geological origin. It was first used by the
British Geologist, Sir Roderick Murchison
(1792–1871), to describe the action of water at
elevated temperature and pressure in bringing
about changes in the earth’s crust leading to the
formation of various rocks and minerals. The
term hydrothermal usually refers to any
heterogeneous reaction in the presence of
aqueous solvents (water) under pressure and at
temperatures above its normal boiling point
(100°C) as a means of speeding up the reaction
between solids. Some of the single crystals
grown by hydrothermal method are shown in
Figure 1.
History Probably the first clue was found by
Schafhäutl in 1845, when he observed quartz
micro crystals upon transformation of freshly
precipitated silicic acid in a Papin’s digestor. In
1848, the German chemist Bunsen obtained
crystals of barium carbonate and strontium
carbonate by cooling an ammoniacal solution
from 200°C and 15 bars.
Figure 1 Selected single crystals grown from the hydrothermal techniques (a) Zinc oxide (b) blue topaz (c) citrine quartz.
The introduction of hydrothermal synthesis in its
modern form into geological science is ascribed
to de Sénarmont, who produced only
microscopic crystals. In the following years, the
method became widely used in Europe and in
the USA. By 1900 about 80 silicate minerals
were synthesized. Over the period of time this
method was further developed by the
contribution of various scientists. Other notable
contributions have been made by Chrustschoff
(1873), Morey (1914), Smith (1923), Adams
(1923), Nacken (1943), Tuttle (1949) and
Capponi (1973). The year and the developments
in the hyrothermal synthesis are listed Table 1.
Experimental To withstand the pressures
involved in hydrothermal syntheses, the use of
autoclaves is usually required (Figure 2). They
serve to protect the reaction vessel; often the
autoclave itself assumes the role of reaction
vessel. Autoclaves usually have thick-walled
steel cylinders with a hermetic seal so as to
withstand high temperatures and pressures for
prolonged periods of time. Furthermore, the
autoclave material must be inert with respect
to the solvent. The closure is the most
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N. E. Quest; Volume 5, Issue 2, July 2011
45
important element of the autoclave. In most
cases steel-corroding solutions are used in
hydrothermal experiments.
Figure 2 Reaction vessels employed for hydrothermal syntheses: Teflon autoclaves used below 170°C is shown on the left (1. Teflon autoclave, 2. Inline, 3. Lower part, 4. Screw Cap). The Teflon- lined steel autoclave used up to 240°C is shown on the right To prevent corrosion of the internal cavity
of the autoclave, protective inlets are
generally used. These may have the same
shape of the autoclave and fit in the interior.
Inlets are usually made up of Teflon, carbon
free iron, copper, silver, gold, platinum, titan
ium, glass or quartz, depending on the
temperature and solutions used.
Mineraliser For the growth of single
crystals by hydrothermal methods it is often
necessary to add mineralisers. A mineraliser
is any compound added to the aqueous
solution that speeds up its crystallization. It
usually increases the solubility of the solute
through the formation of soluble species.
For instance, the solubility of quartz is very
low at 400°C and 2 Kbar to permit
recrystallization in a temperature gradient
within a reasonable space of time, however
when NaOH is added as a mineraliser, large
single crystals can be grown.
Advantages and disadvantages
Hydrothermal synthesis, in contrast to
conventional synthetic methods, offers a
number of advantages which include (1) to
obtain compounds with elements in
oxidation states that are difficult to attain,
especially important for transition metals (2)
the ability to create crystalline phases which
are not stable at the melting point, (3) the
materials which have a high vapour pressure
near their melting points can also be grown
by the hydrothermal method and (4) useful
for the so called low-temperature phases,
and (5) the method is also particularly
suitable for the growth of large good-quality
crystals while maintaining good control over
their composition. Disadvantages of the
method include the safety as it can be
dangerous to open such high-pressured
autoclaves, need of expensive autoclaves
and the impossibility of observing the
crystal as it grows.
Uses A large number of compounds
belonging to practically all classes have
been synthesized under hydrothermal
conditions: elements, simple and complex
oxides, tungstates, molybdates, carbonates,
silicates, germinates, stannates,
chacogenides etc. Hydrothermal synthesis is
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N. E. Quest; Volume 5, Issue 2, July 2011
46
commonly used to grow synthetic quartz,
gems and other single crystals with
commercial value. Some of the crystals
which have been efficiently grown are
emeralds, rubies, quartz, alexandrite and
others. The method has proved to be
extremely efficient both in the search for
new compounds with specific physical
properties and in the systematic
physicochemical investigation of intricate
multi-component systems at elevated
temperatures and pressures. Also the
inorganic-organic hybrid materials of the
heavier periodic group 13-15 elements have
been extensively synthesized under
hydrothermal syntheses.
Reference 1 A. Rabaneu, The Role of
Hydrothermal Synthesis in the Preparative
Chemistry, Angew. Chem. Int. Ed. Engl
1985, 24, 1026-1040; 2 A. West, Solid State
Chemistry and Its Applications, John Wiley
& Sons.
Table 1 Developments in the field of hydrothermal synthesis
Year Name Arrangement Comments 1845 Schafhäutl Papin’s digestor Quartz microcrystals 1848 Bunsen Thick-walled glass tubes carbonates: forerunner of the visual
autoclaving 1851 Sénarmont Glass ampoules in autoclave Mineral carbonates, sulfates, sulfides,
fluorides; founder of hydrothermal synthesis in geological sciences
1873 Chrustschoff Noble metal lining Protection against corrosive solvents 1914 Morey Morey-type autoclaves “Closed” system; standard 1923 Smith, Adams Internally heated autoclave very high pressures and temperatures:
≥ 10 kbar, ≥ 1400°C 1943 Nacken Foundation for the industrial quartz
growth Introduction of hydrothermal synthesis into solid state physics
1949 Tuttle “Cold steal” or test tube arrangement
external pressure regulation and measurement, more extensive working range than Morey-Standard
1973 Capponi Modified belt apparatus Extremely high pressures and temperatures: ≥ 100 kbar, ≥ 1500°C
Newsletter of North East India Research Forum
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THESIS SYNOPSIS 1. Automated Analysis of Stellar Photometric and Spectroscopic Data from Space Missions and Classification of Astronomical Objects
Archana Bora Gauhati University Thesis Supervisors: Dr. Kalpana Duorah (G.U), Dr. Ranjan Gupta (IUCAA)
Astronomers today are awash by sea of data.
The current rapid progress in science and
technology and the subsequent developments in
the astronomical instruments provide us with a
torrent of new data. These data are being
collected everyday in huge volumes through
both automated ground based telescopes as well
as by the space based surveys. The light
reaching us from a distant star contains plethora
of information about the source, the medium it
has passed through and other objects it has
encountered on its way to the observer. The
temperature of the source object, its velocity, the
red shift and hence the distance, the metal
abundance of the object as well as of the
intervening medium, are some of the physical
quantities that can be extracted from the spectra.
The most usual way of extracting these
parameters is to visually inspect and compare
the program spectra with a set of standard
spectra. The presence or the absence of the
absorptions and emission lines yield the
temperature information of the source on the
basis of the Saha's ionization equation. The
measurements of the equivalent widths and line
ratios tell about the surface gravity in case of the
stellar spectra. Photometry is another powerful
tool to reveal some other host of important
parameters, not only about the source objects but
also about the intervening medium between the
objects and the observer. On the basis of such
measurable features a stellar database, for
instance, can be grouped into different classes.
Such classification is important to identify each
individual newly seen star as well as to study the
stellar atmospheric composition and their
population. Similarly, classification can be
carried out for galaxy or other astronomical
database also. There was time when manpower 1
was invested in large scale for stellar
classification. In those days, people used to
visually compare the program star spectra with
that of the standard stars. Such practice of
classification was subject to human error and
time consuming. Further, the human vision
system is not apt to repetitive identification task
often required in classification work. Also in this
new age of astronomical instrumentation, tera
byte of data is getting collected every day. To
compile a comprehensive and homogeneous
database of billions of data sets, it will be
necessary to devise and develop highly robust,
fast, efficient and automated classifiers, based on
computer vision and artificial intelligence tools.
In fact, it is only this increasing availability of
large data sets that has motivated the astronomer
to use computer-aided statistical and pat- tern
recognition analysis techniques, which can
emulate the behavior of human experts. Some
examples of such statistical methods are the
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 48
cross correlation and height of correlation
function, principal component and cluster
analysis. Artificial Neural Network (ANN) has
also been used for similar purposes. The starting
of the Space Science has also opened up a new
window to the astronomer in the shorter wave
band of the electromagnetic spectrum. The UV
window, including both the far-UV (FUV) and
near-UV (NUV) windows, was found to be
extremely useful to address wide range of
astrophysical aspects ranging from planetary
science to cosmology. However, this does not
signify any lesser contribution of the other
wavebands to the understanding of the
astrophysics. As a matter of fact, to understand
the nature of cosmic sources, their radiation
processes and environment, it is necessary to
measure their emissions over the entire
electromagnetic spectrum simultaneously. To
accomplish such objectives India is going to join
this golden era of Space Astronomy by
launching its first dedicated multi-wavelength
astronomy mission, ASTROSAT. Another joint
collaborative UV dedicated mission, Tel Aviv
University Ultraviolet Explorer (TAUVEX),
between Indian Institute of Astrophysics (IIA),
India and Tel-Aviv University, Israel, was also
on-schedule for launch. ASTROSAT is expected
to focus on high resolution UV imaging for
morphological studies of galactic and
extragalactic objects, broadband studies of X-ray
sources and other multi-wavelength targets
ranging from nearby stars to the very distant
AGNs. This will facilitate multi-wavelength
temporal analysis of astrophysical sources like
AGNs, X-ray binaries, Gamma-Ray Bursts
(GRBs) and to detect the correlation between
different energy bands. 2 The measurement of
such correlation is important to put constraints
on the number of radiative processes active in
the sources and can be used to validate or to rule
out their physical models (which are based on
their spectral analysis). The detection is usually
carried out numerically either by using
expensive simulations or by dividing the time-
series in large number of segments to and the
variance, which makes the process ineffective
for light curves of transient sources with lesser
number of data points in the light curve. Like
any other successful missions, the TAUVEX and
the AS-TROSAT satellite missions were
expected to yield a huge set of data during their
lifetime, requiring automatization of
classification and parameterization process of
the astronomical data. Till now several studies
have demonstrated that ANN schemes can
reliably and successfully classify stellar spectral
data and extract fundamental stellar parameters
in the visible region. However, the extension of
applicability of this scheme to UV region has
been less prevalent mainly because of non-
availability of abundant data in the region.
Nevertheless, some attempts have been made in
the past to automate the process of classification
of spectral data of hot stars from the IUE
satellite. Going beyond the full spectra and also
beyond the hot stars, this thesis is aimed to use
ANN with simpler topology that can improve
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 49
with experience, and generalize what it learnt to
accomplish the job of the astronomical
classification, segregation and parameterization.
Such tools are truly useful when one needs to
solve for some hidden parameters and
particularly when such parameters are related by
nonlinear relation. This goal has been achieved
by using both the full spectra as well as the
band-integrated spectra in the UV waveband.
Such photometric band integrated data were
expected from the upcoming TAUVEX satellite.
As a matter of fact, this part of the thesis is one
of the integral aspects in the development of the
automated pipeline for analyzing the TAUVEX
database
(http://tauvex.iiap.res.in/htmls/projects). In the
process the pipeline will also prepare us for
other upcoming missions like AS- TROSAT and
GAIA. The work has used the multilayer back
propagation based algorithm in the hierarchical
fashion to segregate galaxies from stars, to
classify the stars into different spectral types,
and to and interstellar reddening in terms of the
E (B–V) magnitude. This will provide the
interstellar extinction map of our Galaxy, which
in turn could be used for dust modeling. An
analytical expression to estimate the error on the
cross correlation between two light curves 3 is
also worked out in this thesis. This will facilitate
the analysis of light-curves with relatively small
(~1000) number of points, as well as to obtain
the longest time-scale available. However, it is
to be mentioned here that the TAUVEX mission
went down after the GSAT-4 failure in April
2010. The following provides a brief overview
of the structure of the thesis. Chapter 1 of the
thesis gives a general introduction to the stellar
spectral classification, galaxy morphological
classification, and interstellar extinction and on
the importance of the temporal analysis of the
astro-physical sources. Classification is the
process of systematic grouping of a database so
that each group reflects some of the fundamental
characteristics of their own. It provides a better
framework and logical approach for any further
study on the data base. A general survey on the
available method for temporal analysis has been
presented with the emphasis that there is yet
need to and out method other than the available
ones, to be useful in the analysis of short
duration light-curves. Artificial Neural Network
(ANN) can emulate the behavior of human
experts by the process of learning. When this
learning takes place under the supervision of
examples, the learning is known as the
supervised learning; otherwise it is known as the
unsupervised learning. The present work has
made use of the supervised multilayer back
propagation algorithm based ANN for the
astronomical classification and parameterization.
In Chapter 2 we present a pedagogical
introduction to ANN. Stellar spectra show wide
range of spectral variation on the course of their
evolution. Yet the underlying factors that shape
them can be summarized as the effective
temperature and the gas pressure at the outer
surface of the star. It is these two factors that are
attributed to the two dimensions - spectral type
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 50
and luminosity class, of the stellar classification
system. Chapter 3 features the stellar spectra in
the light of UV waveband. The implementation
of the application of the ANN for stellar
classification and for determination of the
interstellar extinction in terms of the E (B – V)
has been accomplished in this chapter. As a
matter of fact, the stars are not standing alone in
the sky; rather they group among themselves to
form the galaxy in conjunction with the gas, dust
and other form of matter. The spectra of the
galaxies are the integrated spectra of their
constituent stars. But their appearance has only a
small number of shapes and galaxies have been
classified on the basis of these morphological
structures. Chapter 4 presents some of the
special features of the spectra of different galaxy
morphological structures and how the galaxy
spectra can be separated from the stellar spectra
using ANN Many space missions monitor the
sky in their respective wave bands to look for
new transient events. The temporal analysis of
such transient events in multi-band can tell us
about the size and shape of the emitting region.
This is usually done by calculating the cross
correlation function (CCF) in different energy
bands using numerically expensive simulations
or by dividing the light curves into large number
of segments to and the variance. This makes it
ineffective to use the method for the shorter light
curves from the transient sources. In Chapter 5,
we present an analytical expression to and the
CCF and to estimate the error on the CCF for
such light curves containing relatively small
(~1000) number of points.
2. Synthesis and labeling strategy for indirect detection of estrogen-derived DNA adducts using aqueous quantum dots Mausam Kalita State University, Manhattan, KS Advisors: Prof. Stefan H. Bossmann and Prof. Ryszard Jankowiak
Chapter 1 Synthesis of DNA-Estrogen Adducts
and Their Structural Modifications for
Bioconjugation
A variety of experimental evidence led to the
hypothesis that catechol estrogen-3, 4-quinones
(CE-3, 4-Q) react with DNA to initiate cancer.
CE-3, 4-Q reacts with DNA purine bases to form
depurinating adducts: N3-adenine and N7-
guanine adducts of 4-hydroxyestrone (estradiol)
[4-OHE1(E2)-1-N3Ade and 4-OHE1(E2)-1-
N7Gua]. These depurinating estrogen-derived
DNA adducts are released and found in urine of
women at high risk and women with breast
cancer making these adducts potential
biomarkers. It is feasible that by inhibiting
formation of estrogen-derived DNA adducts, one
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 51
could prevent initiation of breast cancer.
Therefore new methodologies for detection of
these adducts need to be developed. Organic
synthesis of the standard adducts and their
structural modifications to conjugate with highly
fluorescent quantum dots (QDs) and to
formhapten for monoclonal antibody (mAb)
generation have been reported.
Chapter 2 Direct Synthesis of Aqueous
Quantum Dots through 4, 4’-bipyridine-Based
Twin Ligand Strategy
We report a new class of derivatized 4, 4’-
bipyridinium ligands to synthesize highly
fluorescent, extremely stable, water soluble
CdSe and CdTe quantum dots (QDs) for
bioconjugation. We employed evaporation-
condensation technique, also known as solvated
metal atom dispersion (SMAD) followed by
digestive ripening procedure. This method is
used to synthesize both metal nanoparticles and
semiconductors in gram scale with different
stabilizing ligands in different solvents. The
SMAD involved evaporation/ condensation and
stabilization of CdSe or CdTe in tetrahydrofuran
(THF). The as-prepared product was then
digestively ripened both in water and dimethyl
formamide (DMF), leading to narrowing of
particle size distribution. The ligands were
synthesized by nucleophilic substitution (SN2)
reaction using 4, 4’-bipyridine as a nucleophile.
Confocal microscopy images confirmed the
orange color of the QDs with nanocrystal
diameter of ~5nm as observed under
transmission electron microscopy (TEM)
images. As part of our strategy; 85% of 4, 4’-
bipyridinium salt of carboxylic acid was used to
both stabilize the QDs in water and label basic
amino acids and different biomarkers through
carboxylic acid functional group. 15% 4, 4’-
bipyridinium salt of N-propyl maleimide was
used as second ligand in order to label any
protein containing cysteine amino acid through
1, 4- Michael addition.
Chapter 3 Double Bioconjugation Schemes with
Aqueous Quantum Dot Synthesized By Twin
Ligand Strategy
We present double bioconjugation schemes by
using a new class of aqueous quantum dots
(QDs) synthesized by evaporation/co-
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 52
condensation/digestive ripening method. These
QDs were synthesized through 4, 4’-bipyridine
based twin ligand strategy for both water
solubility and covalent conjugation. The labeling
schemes involved (a) potential breast and
prostate cancer biomarkers: 4-hydroxy-estradiol-
2-N3-Adenine (4-OH-E2-N3-Ade) and 4-
hydroxy-estradiol-2-N7-Guanine (4-OH-E2-N7-
Gua) adducts through EDC/NHS coupling
reaction of 4, 4’-bipyridinium carboxylic acid
ligand, (b) known carcinogen thio-pyrene
through 1, 4- Michael addition reaction of 4, 4’-
bipyridinium maleimide terminal ligand. The
labeling of QDs with DNA-estrogen adducts and
thio-pyrene was investigated by ion exchange
high pressure liquid chromatography (HPLC)
and capillary electrophoresis. Imaging of these
labeled adducts-antibodies interactions on
ELISA plate substantiated the in vitro
application of these QDs. The TEM images of
the labeled QDs are also presented.
Selected Publication
Kalita, M. et.al. (submitted to JACS)
Kalita, M. et. al. (manuscript in preparation)
Kalita, M. et. al.; Chapter 16 Optical and
Electronic Properties of Metal and
Semiconductor Nanostructiures; Editor(s):
Klabunde, Kenneth J.; Richards, Ryan M.
Nanoscale Materials in Chemistry (2nd Edition)
(2009), 539-578. Publisher: John Wiley &
Sons, Inc., Hoboken, N. J.
Pokhrel, M.; Gamage, P. Kalita, M.; Shi, A.;
Bossmann, S. J. Nepal Chem. Soc., 2009, 23, 2-
10.
Dani, R. K.; Kang, M.; Kalita, M.; Smith, P. E.;
Bossmann, S. H.; Chikan, V. Nano Letters,
2008, 8(4), 1229-1236.
3. Total Synthesis of Medium Sized Natural Lactones Partha Pratim Saikia Supervisor: Dr. N. C. Baruah North East Institute of Science and Technology, Jorhat, India
Short Review Total Synthesis of Medium Sized
Natural Lactones. This short review discusses a
few total syntheses of medium sized natural
lactones which are categorized as a rare class of
organic molecules.
Chapter I An efficient reduction protocol for the
synthesis of β-hydroxycarbamates from β-nitro
alcohols in one pot: A facile synthesis of (-)-β-
conhydrine
An efficient and practical one-pot protocol for
the reduction of β-nitro alcohols to their
corresponding N-(tert-butoxycarbonyl) amino
alcohols using Zn-NH4Cl in aqueous methanol is
described. This methodology allows a short
synthesis of (-)-β-conhydrine to be achieved.
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 53
Chapter II An efficient and stereoselective route
to 1-deoxy-5-hydroxy sphingosine analogues
A short and efficient synthesis of 1-deoxy-5-
hydroxy sphingolipid is described. The key steps
involved are a Jacobsen hydrolytic kinetic
resolution (HKR) and Shibasaki’s asymmetric
Henry reaction.
Chapter III Stereoselective Total Synthesis of
Cytotoxic Oxylipin Topsentolide B2
An efficient stereoselective synthesis of marine
oxylipin Topsentolide B2 is described. The key
steps involved are Yamaguchi coupling, ring
closing metathesis and Julia-Kocienski
olefination.
PhD Comics (www.phdcomics.com)
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 54
FACEBOOK DISSCUSSION Does Indian Research meet World class standard? Edited by Dr. Saitanya K Bharadwaj
Facebook is found to be one of the best
communications media worldwide. Facebook
offers easy, fast communication among group
members and open discussions. A group has
been created for "North east India Research
Forum" which was long before created in yahoo.
Few active students join in the group recently.
One of the members Mr. Neelkamal Deka put a
question from the lecture of Indian-Origin Nobel
Laureates Venkataraman Ramakrishan, who
won Nobel Prize for Chemistry in 2009. Since
1930 there is no Nobel Prize in Science from
India, However Indian Origin staying abroad are
honored with the same. The young student
Neelkamal Deka, therefore, put forward his
doubt in the form of question-“Is the research
environment/facility in India not meeting the
world class standard”. Many of forum members
responded on this query and it is the longest
discussion in the forum ever. Few members
shared their view from their personal experience.
There is no doubt about the advanced facility in
western research laboratory and to compete with
them India must need some well equipped
laboratory. Indians were more scientific in
ancient time. The concept of TV, Rocket,
Missile were given in the era of Mahabharat
itself. No one can forget the discovery of
"ZERO" by an INDIAN. The well known
"Raman effect" originated in India. The current
status of India as well as world has changed.
The other countries developed very fast and
India remain in the same position, in fact one
can say it is going down. Once British left India,
they took away everything except the language
English. The Poverty, corruption, not having
proper leader are some of the main cause for
being developing country.
Indians were smart, intelligent, intellectual…and
still they are!!! USA does not have anything they
import all the good things from other countries.
They import smart people, really smart people
from INDIA- one documentary mentioned!!!
USA buys brain of INDIANs and use to develop
them. The first class INDIANs move to USA
and settled in- Saitanya K Bharadwaj bubbled
his feeling. “In reality, the whole western
research positions mostly occupied by Indian,
Chinese and Japanese”- Gitanjal Deka added.
It is always better to go abroad and learn the
advanced techniques for 3-5 years and should be
back to the motherland, should spread the
knowledge, idea improve the system, however it
doesnot happen. Once left, Indians never come
back, even CSIR/DST/DBT spending millions in
research –Viz Brahma Ramchiary said. However
current trend has been changed, after recession
majority of the Indian returned home and started
own career in India- Neelkamal and Gitanjal
pointed out the current status.
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 55
We can never agree with the fact that there is no
facility or research exposure in India. In basic
Research India is always in first row and is from
ancient time. Government has invested so much
now a days in all the aspects of Science, we
can’t say that there is lack of facility. If one is
willing to expense his knowledge with those
facilities, surely he/she can do the best. We need
to have attitude-again Ramchiary expressed her
feeling.
Then Saitanya raise a question about
cancellation of appointment letter of an INDIAN
scientist joined in CSIR lab from MIT. Viz
Brahma Ramchiary replied that he (the
scientists) wanted to change the entire Indian
CSIR system to MIT, which was not possible in
INDIA and therefore he has been sent back!!!
Arindam Adhikari supports the comment made
by Ramchiary. And he added- That's not totally
correct. It's not because of recession. The trend
has changed over the years. People who left few
decades back, they are not returning or they
don't want to return or they can't return after
spending so many years now. Whether for last 8-
10 years it has changed, may be it's because of
effect of globalisation, opening of market,
moreover everything one gets in India now a
days. There is increasing urge to do something
for its own people and for the country
eventhough the corruption is rampant
everywhere. Younger generation now
understand pain of living abroad far from family
and friends and wants to spend time with his/her
own people. After returning people are trying to
create something of their own, becoming
entrepreneur. However there are so many factors
to carry out your own research eg. your file not
in time without buttering, long time to get
project funding and many more… Govt. system
is totally rotten system. One who is in the
system he understands well.
Againg Neelkamal Deka mentioned that
Brilliant students are not heading towards the
basic research, which may be one of the reasons
why Indian research is not far behind from the
other. In this contrast, Bharadwaj referred a
documentary where it was shown 60% computer
engineers in USA are Indian. The brilliant
students get into the IIT and they fly to USA for
a comfortable life and work for them.
Saitanya again mentioned that an institute should
have minimum basic facilities for basic research.
He was experienced with lack of distill water,
proper ventilation etc. in IIT Guwahati, which is
one of the premier institute. If there is scarcity of
distill water in such institute, what can be expect
from it!!! Ramchiary pointed out that there are
funding agencies to make the lab well equipped
which may be competitive. So one should go for
that!!! However institute should have at least
some basic infrastructure before staring
research- Saitanya argued. Ramchiary then said
that she belongs to a CSIR Lab and it has some
good facilities than in USA and if Scientists are
competitive enough foreign funding agencies
also provide funds.
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 56
Arindam Adhikari mentioned that people from
abroad say Indians and Chinese are good in
basic research. May be it was good several
decades back during C.V.Raman, Satyendranath
Bose 's time. But now we are in nowhere, neither
in basic and for applied, its a dream. Govt. lab
scientists are getting project funding just to get
some PhD students on whom they can dictate
terms. We are not able to do good innovative
research, no originality, no new idea, no good
quality papers, which can atleast give a new
dimension in science. We are just doing
permutation combination, change the %, ratios,
check properties and publishing, that's not a real
science.
Gitanjal Deka pointed out that the facilities in
western countries are not comparable with India.
He is a student of laser and told that hardly few
lab has modern laser system in India, but in
western labs almost every lab has highly
equipped and modern lasers.
Debajyoti Mahanta, a researches from IISc
Bangalore, compared Indian Science with World
Science under three different points. 1) Talent or
man power: Talent is well distributed all over
the World. If we consider the “Brain Drain”,
then also we have enough talent in India to lead
us. 2) Money or facilities: Yes, we don’t have
world class facilities or money. But the
important question: “are we utilizing the less
money, we have in a proper way????” The
answer is NO. Then the question is “why???”.
For this let me move to the third but the most
important point. 3) Research Culture: The main
difference comes from this point. In any World
top university, they take a problem where they
really have interests and many good people work
on it to understand the problem and to find out a
solution. In the process they may take long time,
but finally they make a contribution to Science.
But in India, research is publication oriented.
We take ten different problems (it does not
matter whether we have interest on it or not, but
it should give us a publication), and work hard
on all these problems and get some publications.
Finally we don’t have any clear understanding in
any of those problems. So, there is no proper
contribution to Science. Now important thing is
“Can we change it?”.
Binita pathak said “It’s time for refinement of
old systems...It’s time to reunite and do work for
benefit of society, nation and off course for
survival of human being. From my opinion it’s
their (say Vekataraman Ramakrishan etc)
responsibility to contribute to resolve the
shortcomings in Indian Scientific research
systems (to an extent excluding Govt. policy as
Iis a different issue, still modification is also
required there ) if they are aware of those (as
they are experiencing it)! Surely its possible for
them”. Prof. Gautam Desiraju discussed all these
themes that relate to research globally in his
editorial in Angew. Chem. Int. Ed. 2011, 50, 2-
Bipul Sarma added.
Anupam Patgiri, a researcher from NYU, shared
the original video of the Interview of
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 57
Ramakrishnan, given to CNN-IBN just after his
Nobel Prize was announced
http://ibnlive.in.com/news/dr-ramakrishnan-on-
winning-the-nobel-prize/102884-11.html.
Anupam said that Ramakrishnan never applied
to any Institute in India for an academic
position, but his application was rejected by
most American universities, which made him
work at the Brookhaven National Lab before
finally moving to University of Utah as a
tenured faculty member
(http://www.nigms.nih.gov/News/Meetings/Stett
en/venki.htm,
http://nobelprize.org/nobel_prizes/chemistry/laur
eates/2009/ramakrishnan.html). There are people
who contributed more to ribosome research than
Ramakrishnan, but he had a big MRC lobby
(famous for producing Nobel laureates) behind
him-Anupam hinted. Again, regarding Rarayana
Murthy's statement in the interview with Leslie
Stahl on CBS 60 min, it is important to mention
that he always brags about Indian engineers to
the western media mostly for commercial gain
(Infosys hasn't invented anything in its 30 years
of existence with Narayana Murthy's legion of
geniuses). Anupam also suggested to read "Geek
Nation" by Angela Saini where real measure of
India on a global stage is described. Anupam has
been a student at IISc and now a grad student at
NYU, and he has visited some US labs
(including some at Harvard, MIT and Berkeley),
from his experience he said that IISc has no less
facilities than most US universities to do
"WORLD CLASS" research, but most (NOT
ALL though) IISc labs (most Indian labs for that
matter) lack vision or long term goals. Again,
following up Viz Brahma Ramchiary’s
comment, he said that we lack innovation in
India (or we are not encouraged to cultivate it),
most grad students in India are treated as lab rats
(by their PIs) rather than stimulating them to
think independently. One of the reasons why the
PIs in India lack innovations is because there is
no competition for grants (US labs stand at the
opposite pole in this matter). Lastly, there is no
collaborative mindset (except for NCBS,
Bangalore), which is important to foster
innovation (most big grants by NIH or NSF are
awarded to collaborative projects only). He sum
upped-“we can't just whine about not having
facilities or money in India to do WORLD
CLASS RESEARCH, when we have no clear
idea about what to do with these instruments or
money, substituting Chlorine with Bromine
kinda science will take us nowhere, At the same
time, most of the good chemistry publications
(JACS, Angew Chem, Org Lett etc) is also
coming from Indian Lab, these days.”
Pankaj Barah, a graduate student in Norway
Institute was fortunate to meet and listen to
Venky, It was in Centre for Cellular and
Molecular Biology (CCMB-Hyderabad)
(http://www.hindu.com/2009/10/08/stories/2009
100857520200.htm). "Dr. Ramakrishnan
advised researchers at the Centre for Cellular
and Molecular Biology (CCMB) to use high-
resolution tools to get valuable insights into the
functions of bio-molecules in cells or bacteria."-
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 58
The Hindu. Pankaj mentioned that labs like
IISC, TIFR, NCBS etc also have world class
brains and dedicated scientists and researchers,
still they have to struggle a lot for international
recognition. The same way in the past G. N.
Ramachandran
(http://en.wikipedia.org/wiki/G._N._Ramachand
ran ) was being deprived of Nobel Prize simply
because he was an Indian. However, all the
Indian research laboratory is not well equipped,
for example, Indian Synchrotron facility in
Indore is not powerful enough for such high
resolution works. Rajan Shankarnarayan the key
scientist in macromolecular crystallography lab
has to go to Germany every now and then to
collect x-ray diffraction data. India purchases a
technology when western world things that it is
time to procure next generation technology for
the same. Political and bureaucratic red tapping
is also one of the major draw back in Indian
science- Pankaj concluded.
In conclusion, as an editor and participant of this
discussion, I would like to thank all of the
research scholars of North East India Research
Forum, for sharing their view among us. Finally
one can conclude that some Indian laboratory
has world class facility, however there is no long
term innovative goal. No one can directly say we
donot have ultramodern technique to do basic
research, we need an innovative mind.
PhD Comics (www.phdcomics.com)
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 59
MEMBERS FACE Dr. Mausam Kalita
Kansas State
University, USA
Mausam Kalita Received his MS from
University of Delhi in 2003. Then he moved to
USA for his doctoral research and completed
graduation from Kansas State University, USA
under advisors Dr. Prof. Stefan H. Bossmann
and Prof. Ryszard Jankowiak in 2010. His Ph.
D. thesis entitled Synthesis and labeling strategy
for indirect detection of estrogen-derived DNA
adducts using aqueous quantum dots. Currently
he is a post-doctoral research at the same
university. He is the older son of Mr. Dilip
Kalita, residence of Guwahati.
Papori Gogoi
IIT-Guwahati
Papori Gogoi ([email protected]),
daughter of Joy Nath Gogoi and Bonti Gogoi
belong to Niz Mancotta Gaon, East Milan
Nagar, Dibrugarh, Assam. She received her
B.Sc. degree under Gauhati University and
M.Sc. from IIT-Delhi in 2007 and 2010
respectively. She qualified following national
level examinations: (1) Joint admission to M.Sc.
program (JAM) 2008 [rank 207], (2) joint CSIR-
UGC test for junior research fellowship (NET)
Dec 2009 [rank 33], (3) Graduate Aptitude Test
in Engineering (GATE) March 2010 [rank 182].
Currently she is working with Dr. Perumal
Alagarsamy, Associate Professor, Department of
Physics, Indian Institute of Technology
Guwahati, in a project entitled Development of
Domain wall free Fe-Ta-C based soft magnetic
thin film.
Dr. Archana Bora
Gauhati University
Archana Bora, received her Ph.D. degree in
2011 jointly from Gauhati University and Inter
University Center for Astronomy Astrophysics
(IUCAA), Pune. Her thesis title is Automated
Analysis of Stellar Photometric and
Spectroscopic Data from Space Missions and
Classification of Astronomical Objects with Dr.
Kalpana Duorah (G.U), Dr. Ranjan Gupta
(IUCAA). Her other major achievements are (i)
GATE in Physics in 2004, (ii)JEST in Physics in
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 60
2004, (iii) NET (LS) in physics in 2005. During
2005-2009 she worked as JRF on ISRO respond
project at IUCAA, Pune. She worked as assistant
professor at Arya Vidyapeeth College, Guwahati
in 2010 -2011 and currently she is at department
of physical science, G.U. as assistant professor.
Nabanita Das
NEIST, Jorhat
Nabanita Das, daughter of Sri Kanak Ch. Das
from Barpeta town (Assam). She received her
Master’s of Science from Gauhati University in
2007 and then joined North-East Institute of
Science and Technology (NEIST), Jorhat as
Rsearch Scholar under the supervision of Dr. P.
R. Bhattacharyya, senior principal scientist. She
is also registered as a Ph. D. Student to
Dibrugarh University, Assam.
Dhrubajyoti
Talukdar
Tezpur University
Dhrubajyoti Talukdar belongs to Tezpur, Assam.
He received his B.Sc. degree from Biswanath
College in 2006 and M.Sc. from Tezpur
University in Applied chemistry (Specialization
in catalysis) in 2008. Currently he is a Ph. D.
Student in the department of Chemical sciences,
Tezpur University with Dr. Ashim Jyoti Thakur,
Assistant Professor. His research area is green
chemistry and catalysis. He published his work
in the international journal.
Quotes
@ Facts are the air of scientists. Without them you can never fly. Linus Pauling @ Our scientific power has outrun our spiritual power. We have guided missiles and misguided men. Martin Luther King, Jr.
@ A scientific man ought to have no wishes, no affections, - a mere heart of stone. Charles Darwin @ Scientific truth is marvelous, but moral truth is divine and whoever breathes its air and walks by its light has found the lost paradise. Horace Mann @ I have frequently been questioned, especially by women, of how I could reconcile family life with a scientific career. Well, it has not been easy. Marie Curie @ Socialism is... not only a way of life, but a certain scientific approach to social and economic problems. Jawaharlal Nehru @ Anybody who has been seriously engaged is scientific work of any kind realizes that over the entrance to the gates of the temple of science are written the words: 'Ye must have faith.' Max Planck
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 61
NEWS & ACHIEVEMENTS
1. Dr B K Saikia, Research Officer, Indian Oil
Corporation Ltd, Haldia has been conferred the
title of 'Fellow of Institution of Chemists (India),
FIC' in 2010 by the Institution of Chemists
(India), Kolkota for his achievement in
contributing towards analytical chemistry.
2. Dr. Pankaj Bharali joined Department of
Chemical Sciences, Tezpur University as
Assistant Professor in August 2011.
3. Dr. Gakul Baishya joined as Scientist at North
East Institute of Science and Technology
(NEIST), Jorhat in September 2011.
4. Dr. Pranjal Gogoi joined as Scientist at North
East Institute of Science and Technology
(NEIST), Jorhat in September 2011.
5. Partha Pratim Saikia received his Ph. D.
degree from Dibrugarh University. He did his
doctoral research under the supervision of Dr. N.
C. Baruah at the Natural Products Chemistry
Division, North East Institute of Science and
Technology, Jorhat, India.
LETTERS TO EDITOR
I have been recently introduced to this
North-East India Research Group by the group
elite members. I thank to them. I would say this
is a fantastic idea by our researcher, scientists
grown from this community. This is certainly a
strong inspiration to all, particularly in science
related subjects. I think no one can deny that this
group is not a great source of help and
motivation. I am really happy to be associated to
this family. Currently I am working at Assam
Agricultural University, Jorhat and look forward
to this community to share news, views and
opportunities as well as help in pursuing
research work. We all are more or less facebook
addicted and the idea of North East India
Facebook Research Forum is simply candid. I
have gone through several must and sensitive
topics that have been discussed and shared our
opinions. I believe this kind of discussion and
blog writing would build up motivation and
carry expected changes. I would like to thank all
associated with this group specially moderators,
the editorial team, contributors towards NE
Quest and others. Loads of information by NE
Quest, Forum discussions, and email response
are definitely an honest help towards the
community. I admire and wish long-live of
North-East Research Group.
Gitashree Goswami
Assam Agricultural University, Jorhat
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 62
Through The Lenses by Bipul Sarma
Sunset is evenly beautiful whether in Grand Canyon (a) or historic Joysagar Pukhuri (b)
The nature conservancy protects earth's natural resources and beauty. Whether a concrete world or a
household flower tub (Kopou phool) can never barricade the beauty of Spring.
All comes from our culture (left, Ranghar Bakori) in confronting ourselves pride worldwide (right)
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 63
Fellowship/ Advertisement/ Opportunity 1. The Erasmus Mundus programme aims to enhance quality in higher education through scholarships and academic co-operation between Europe and the rest of the world. It offers scholarships to students and researchers of exceptional quality to work at two or more European universities. Nearly 130 masters and doctoral courses are available to choose. Study periods are typically between 3 months and 3 years. Since the start of the programme in 2004, more than 1200 Indian students have been selected for Erasmus Mundus scholarships. Details can be found in the following link http://xa.yimg.com/kq/groups/22022308/1814175536/name/Erasmus_Mundus_Scholarship.pdf 2. The Norwegian Government Scholarship for Master’s and PhD Students from Developing Countries at universities and university colleges in Norway is open now. Scholarship provider is the Norwegian Government. Eligibility: As a student, you must apply directly from your home country. You must have stayed at least one year in your home country directly prior to the planned course of study at the Norwegian university/university college. All candidates should typically have the following basic qualifications: Secondary school certificates. Minimum two years of higher education from their home country. Scholarship application deadline is 1st December 2011. Read more in the following links http://studyinnorway.no/Tuition-Scholarships/Scholarships http://scholarship-positions.com 3. Exchanged Postdoctoral fellowship of Max Planck Society & DST India invite applications / proposals for Max Planck Partner Groups (PG) at Indian Partner Institutions (IPI) for Junior scientists/postdoc and junior faculty. The programme for Max Planck Partner Groups is open to all MPI and to all research institutions / universities in India. General Max Planck Partner Groups have been developed as an instrument for the support of cooperative research in target areas which are scientifically promising and innovative, geared to the future and of mutual interest to Max Planck Institutes (MPI) and to the designated partner institutions in India. Max Planck Partner Groups enable both the MPI and the Head of the Partner Group to continue a sustained scientific interaction. Heading a Max Planck Partner Group is a distinction. The Max Partner Group is initially established for a three-year period allowing the scientist to build up their own research group in India and to remain in close research interaction with a MPI. It can be extended for a further two years (maximum period: five years) based on the outcome of the review and the recommendation of the Scientific Advisory Board. Candidates for Max Planck Partner Groups will be officially and finally designated by the President of Max Planck Society (MPG) and the Secretary of Department of Science & Technology (DST). Qualification Partner Groups are led by former Indian guest researchers of MPI of proven scientific excellence, who have returned or are about to return to a high-performance research institution / university in India and continue their research activities in close co-operation with their former hosts. The candidate should be an Indian scientist of proven excellence at young faculty / postdoc level and maximum 38 years of age (i.e. not yet 39 years as on 1st January 2012) who has spent minimum 12 months at a MPI. If the candidate is not working at a research institution / university in India at the time of submitting the nomination, the candidate is expected find such a position by 1 March 2012. Funding MPG will allocate up to 20,000 EURO p.a. for up to 5 years for the Max Planck Partner Group. Funding provided by MPG will be allocated through the MPI towards the Indian host institution according to standard MPG rules for Max Planck Partner Groups. Funding provided by MPG towards the Max Planck Partner Group will be governed by a bilateral standardized agreement between the MPI and the Indian host institution. The MPI will only take responsibility for the funding provided by MPG. DST will provide matching funds as per project approval, according to standard DST rules and under a separate agreement. Funds should be utilized, as far as possible, for the purpose of creating MPI like facilities at the respective Indian host institution. Application Modalities The programme for Max Planck Partner Groups is open to all MPI and to all research institutions / universities in India. Two procedures are applicable to bring forward suitable candidates: i) Directors of MPI can
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 64
nominate candidates to MPG. ii) Candidates for the Head of a Partner Group can apply directly to DST, conditional that they fulfil the criteria as set forth above. Documents must be submitted in parallel in duly signed original copies to MPG by Directors of MPI and to DST by the Indian scientist. Documents to be submitted, both by the Director of a MPI nominating a candidate to MPG and by the Indian scientist for the Head of a Partner Group applying directly to DST: (a) detail letter of reference (laudation) from the director of MPI where the candidate has spent minimum 12 months, (b) list of publications, (c) curriculum vitae, (d) three letters of reference from senior scientists at least one of which will come from outside Germany and India, (e) project description and planned research activities which must also specifically elaborate on the intended bilateral cooperation with the MPI, (f) description of previous and future research objectives, (g) existing ties of the candidate for the Head of Partner Group to Germany other than to the MPI, (h) details of other grant support, (i) letter of intent by the director of the Indian host institution in which the acceptance to host a Partner Group is declared, (j) for candidates who at the time of nomination are not based in India, please state: The name of the Indian host institution to which the candidate will return and the date by when candidate will take up this position, (k) two separate macro-budget outlines for DST and MPG budgets for first year of operations. Documents to be sent to the Max Planck Society: Send one signed original application to: Max Planck Society Mr. Michael Nagel, Division of International Relations, Hofgartenstr. 8, D-80539 München, Germany and one electronic copy to: Mr. Michael Nagel: E-mail: [email protected]. For any questions regarding the programme you may also contact Felix Kahle Representative Max Planck Society at German Embassy New Delhi. Tel.: 0091-11-4419 9163; E-mail: [email protected]. Documents to be sent to DST: Send one signed original and signed application to DST. Please contact: Mr. R. K. Sharma, Scientist D, International Division, Department of Science & Technology, Technology Bhavan, New Mehrauli Road, New Delhi 110 016, E-mail: [email protected]. Note: Please ensure to send only complete applications to DST, i.e. submitting documents consecutively is not accepted and such applications will be rejected. Deadline for submitting Nominations: 28 September 2011 4. Named Postdoctoral fellowship, Argonne National Laboratory Argonne offers these special postdoctoral fellowships to be awarded internationally on an annual basis to outstanding doctoral scientists and engineers who are at early points in promising careers. The fellowships are named after scientific and technical luminaries who have been associated with the laboratory, its predecessors and the University of Chicago since the 1940s, including:
• Alexei Abrikosov, theoretical physicist • George W. Beadle, biologist • Arthur Holly Compton, high energy particle physicist • Ugo Fano, atomic physicist • James Wallace Givens, mathematician and computer scientist • Joseph Katz, nuclear organic inorganic chemist • Maria Goeppert Mayer, nuclear physicist • Aneesur Rahman, computational physicist • David Schramm, astrophysics • Glenn Seaborg, chemist • Harold Urey, nuclear chemist • Eugene Wigner, theoretical physicist • Walter H. Zinn, nuclear reactor physicist
Fellowship recipients will be assigned according to his or her scientific or technical discipline. For detail visit http://www.dep.anl.gov/postdocs/namedpostdoc.htm 5. Imp link for postdocs and job opportunities in Switzerland: http://www.academicjobseu.com 6. An International Conference on Nanotechnology And Biosensors (ICNB-2) -2011 will be held During Wednesday 28th Dec to Thursday 29th Dec 2011 at Raghu Engineering college, Dakamarri,
Newsletter of North East India Research Forum
N. E. Quest; Volume 5, Issue 2, July 2011 65
Bhimilipatnam, Visakhapatnam, 531162, Andhra Pradesh, India. Details in the following link http://www.iacqer.com/ICNB_callforPapers.htmzl 7. Few important links on workshop/conference listing http://www.grc.org/programs.aspx?year=2011&program=catchment http://www.conference-service.com/conferences/in/index.html http://www.chemistry-conferences.com/ 8. Inorganic Analytical Chemist Company/Institution: Avalon Staffing Location: Ventura County, CA, USA Date Posted: 14 September 2011 Bench chemist to carry out chemical and physical laboratory tests. This position will support existing production and new development programs by following standardized formula and experimental procedures to prepare & analyze chemical solutions and products. The focus of this position is two-fold: (1) Dedicated to assisting specification development with regards to material composition and its impact on product performance, (2) Dedicated to providing analytical assistance with Failure Analysis/Autopsy of the production and development of our electochemical product, (3) This is a hands-on, data driven, summarizing-results position that requires a bachelor's degree and at least 2 years experience in a professional laboratory. Responsibilities will include: (1) Standardize & document in-house analytical testing, First goal of establishing a baseline of existing materials, review material specification documents, and ensure accuracy, (2) ICPMS testing for incoming raw chemical materials on an Agilent 7500ce, (3) Particle size analysis for incoming and in-process materials on a Horiba LA-930, (4) Titration testing of chemical solutions, (5) FTIR fingerprinting to detect gross contamination of organic materials on a PerkinElmer Spectrum BX with an AutoIMAGE microscope, (6) XRF for in-process testing of cathode and anode on a Spectrace QuanX, (7) X-ray machine – for FA, dimensional measurement on a CRT 2000, (8) General: (a) Testing, (b) Lab set-up, (c) Equipment handling, (d) Documentation of results Qualified and interested candidates should forward a resume immediately to: Jackie Hoofring, Avalon Staffing, 818 961 7272, Email: [email protected]
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