Monash SeRP, FHIR and Helix · SeRP is a . high powered, safe. and . secure. e-research platform...
Transcript of Monash SeRP, FHIR and Helix · SeRP is a . high powered, safe. and . secure. e-research platform...
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Chris Mac Manus & Mat IshacMonash Helix
19/11/2019
Monash SeRP, FHIR and Helix
NHMRC Symposium
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What is FHIR?
• FHIR (Fast Healthcare Interoperability Resources) is designed to enable the exchange of healthcare-related information. This includes clinical data as well as healthcare-related administrative, public health and research data.hl7.org/fhir
• FHIR is based on HL7 and CDA standards.• FHIR ‘Resources’ are a collection of information models that define the data elements,
constraints and relationships for the business objects most relevant to healthcare.• FHIR ‘APIs’ are a collection of well-defined interfaces for interoperating between two
applications.
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What is FHIR? (in pictures)
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Monash Partners FHIR Project
Overview• Monash Partners has awarded funding to Monash University to establish a FHIR capability
that will integrate Health Service data with Clinical Registry data.• The 2 year project will develop FHIR based infrastructure in the University• Two Monash Partner hospitals engaged: Peninsula Health and Alfred Health• Two Clinical Quality Registries: Victorian Lung Cancer Registry and Prostate Cancer Outcomes
Registry (Victoria)• FHIR infrastructure located in secure zone to ensure security of data.• Managed by an ISO27001 Information Security team.
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Monash Partners FHIR Project (in pictures)
• Victorian hospitals are yet to embed FHIR technology
• Currently HL7 is used for transferring data between systems
• Data will be transferred using SFTP in the interim
• Development of a mapping from FHIR to SQL will allow the process to scale
• Additional data sources can be added
• Additional end-points can be added
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Project Update
Ethics• Ethics amendments have been made to allow technical staff to handle
identifiable data.Health Services
• Both Alfred Health and Peninsula Health have been engaged, and are developing extracts from Data Warehouses
Helix• Developer is building tools to interrogate and map FHIR objects• Architect is establishing a FHIR server to accept incoming messages
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What is Monash SeRP?
SeRP is a high powered, safe and secure e-research platform that allows data owners and researchers to store, access, share, link and analyse data at scale, in a fully governed, highly secure environment, whilst maintaining full control of the data at all times.
• Hosted on NeCTAR Research Cloud (Local Monash instance)• Penetration Test conducted• Data Privacy Assessment conducted
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https://www.monash.edu/__data/assets/pdf_file/0008/1498337/Monash_Uni_Helix_Flyers.PDF
https://saildatabank.com/wp-content/uploads/UKSeRP_Brochure_v1.5.pdf
Monash SeRP – A Swansea collaboration
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Access to Monash SeRP
Secure remote access from anywhere in the world
Monash Account • Used to login to the Monash SeRP sites• Affiliate appointments OK
Restricted via access to Monash VPN• No VPN – no access
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Key features for data custodiansCustomised to each project
• Create roles and permission levels
Data custodian governed• File in and file out approval• Data upload and inbuilt quality checks
Modules in development• Data linkage• Natural Language Processing
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Key features for researchersComplete, pre-installed suite of software
• Ability to customise to the project and the user
Access• Separate and dedicated storage space - P: drive (project drive) and U: drive (user drive) • No saving to desktop• No internet access (some software exceptions – e.g. Stata, R through private proxy
server)
High powered computing• “Flavours” (Small, Medium, Large, X-Large)• Geospatial analysis with GPU support
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Support for SeRP Users
Online resource• Support and knowledge base portal• Researcher and custodian guidelines
Support & Enquiries email address• [email protected]
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Monash Helix
Helix is a health data ecosystem operated by expert staff and underpinned by world-class research infrastructure driving the progress of personalised medicine towards a healthier future society.This capability is an initiative of Monash University working collaboratively with key health partners, including Alfred, Eastern, Monash and Peninsula Health.
Capabilities• Secure data management - REDCap• Governed environments for data sharing - Monash SeRP• Secure virtual environments for statistical data analysis• High performance computing, research cloud and research data storage - eResearch
Centre and MASSIVE
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Monash Helix
Specialist Services• Clinical research software development• Clinical database hosting/maintenance• Collaborative platforms• Data linkage• Advocacy for enabling translational
research
https://www.monash.edu/researchinfrastructure/helixHelix
Monash UniversityLevel 1, 553 St Kilda Road
Melbourne, VIC. 3004
• Data management plan support• Consulting/Advisory support for secure
environments for clinical research• Compliance with local and international data
privacy laws (e.g. GDPR)