Molecular phylogeny and systematics of the tribe ...10.1007/s00606-011-0452... ·...

file:///C|/Users/1/Desktop/ESM%20data.txt

Molecular phylogeny and systematics of the tribe Chorisporeae (Brassicaceae)

Plant Systematics and Evolution

Dmitry A. German, Jason R. Grant, Martin A. Lysak, Ihsan A. Al-Shehbaz

South-Siberian Botanical Garden, Altai State University, Lenina str. 61, 656049, Barnaul, Russia andDepartment of Functional Genomics and Proteomics, Faculty of Science, Masaryk University, Kotlarska 2, CZ-61137, Brno, Czech Republic

[email protected]

file:///C|/Users/1/Desktop/ESM%20data.txt [29.03.2011 15:46:23]

PAUP* output Page 1Sun Jun 27 16:16:43 2010

P A U P *Version 4.0b10 for 32-bit Microsoft WindowsTue Jun 15 15:25:29 2010

-----------------------------NOTICE---------- ------------------- This is a beta-test version. Please report any crashes, apparent calculation errors, or other anoma lous results. There are no restrictions on publication of results obtained with this version, but you should check the WWW site frequently for bug announcements and/or upd ated versions. See the README file on the distribution med ia for details. --------------------------------------------- -------------------

Processing of file "D:\_Dima\Parrya_6a_trnLF short\ Parrya_6a_trnLF short.nxs" begins...

Data read in DNA format

Data matrix has 116 taxa, 1216 charactersValid character-state symbols: ABCDEFGHIKLMNOPQRSTU VWXYZACGTMissing data identified by '?'Gaps identified by '-'"Equate" macros in effect: R,r ==> {AG} Y,y ==> {CT} M,m ==> {AC} K,k ==> {GT} S,s ==> {CG} W,w ==> {AT} H,h ==> {ACT} B,b ==> {CGT} V,v ==> {ACG} D,d ==> {AGT} N,n ==> {ACGT}

Processing of file "D:\_Dima\Parrya_6a_trnLF short\ Parrya_6a_trnLF short.nxs" completed.

Heuristic search settings: Optimality criterion = parsimony Character-status summary: Of 1216 total characters: All characters are of type 'unord' All characters have equal weight 827 characters are constant 144 variable characters are parsimony-uninf ormative Number of parsimony-informative characters = 245 Gaps are treated as "missing" Multistate taxa interpreted as uncertainty Starting tree(s) obtained via stepwise addition Addition sequence: simple (reference taxon = Lepi dium lacerum) Number of trees held at each step during stepwise addition = 1 Branch-swapping algorithm: tree-bisection-reconne ction (TBR) Steepest descent option not in effect Initial 'MaxTrees' setting = 100 Branches collapsed (creating polytomies) if maxim um branch length is zero 'MulTrees' option in effect Topological constraints not enforced Trees are unrooted

'MaxTrees' limit (10000) hit while swapping on tree #20 (score=784)

Heuristic search completed Total number of rearrangements tried = 2.8128e+0 09 Score of best tree(s) found = 784 Number of trees retained = 10000 Note: Effectiveness of search may have been dimi nished due to tree-buffer overflow. Time used = 00:19:20.6

Strict consensus of 10000 trees:

/-------------------------------------------------- ------------------------------ Lepidium lacerum|+-------------------------------------------------- ------------------------------ Lepidium rubtzov|


| /-------- Alyssum lenense| /-------------------------- ---------------------+| | \-------- Galitzkya potani| || +-------------------------- ------------------------------ Dendroarabis fru| || | /-------- Solmslaub baiog| | /-------+| | | \-------- Phaeon kashgar| | /-------+| | | | /-------- Strigos brevipes| | | \-------+| | /-- -----+ \-------- Spryginia falcat| | | || | | \------------------------ Christolea crass| | || | | /-------- Leiosp exscapa| | /-------+ /-------+| | | | | \-------- Leiosp pamirica| | | | /-------+| | | | | | /-------- Parrya beket 1| | | | | \-------+| | | \-- -----+ \-------- Parrya beket 2| | | || | | | /-------- Parrya saposhn 1| | | \---------------+| | | \-------- Parrya saposhn 2| | || +---------------+ /-------- Bunias or 1| | +---------- ---------------------+| | | \-------- Bunias or 2| | || | | /---------------- Matthiola madere| | | || | | /-------+ /-------- Ster viol| | | | | || | | | \-------+-------- Eremoblastus cas| | | | || | \---------- -----+ \-------- Microstigma defl| | || | | /-------- Hesperis sib 1| | \---------------+| | \-------- Hesperis sib 3| || | /-------- Clausia aprica 1| | /-------+| | | \-------- Clausia aprica 2| | /-------+| | | \---------------- Dont pinnat| | /-- -----+| | | \------------------------ Dont gubanovii| +-----------------------+| | \-- ------------------------------ Dont interm| || | /-------- Dont tibet 1| | /------------------ ---------------------+| | | \-------- Dont tibet 2| | || | | /-------- Chor tenella 1| | | /-------+| | | | \-------- Chor tenella 2| | | /-- -------------+| | | | \---------------- Chor tashkorgan| | | || | | | /-------- Chor sibirica 1| | +---------------+ /---------------+| | | | | \-------- Chor songarica| | | | || /-------+ | \-- -----+ /-------- Chor macropoda| | | | | /-------+| | | | | | \-------- Chor sabulosa| | | | \-------+| | | | \---------------- Chor bungeana 2| | | |


| | | +------------------ ------------------------------ Chor bungeana 1| | | || | | | /---------------- Chor persica 1| | | | || | | | +---------------- Chor persica 2| | | | /-------+| | | | | | /-------- Chor purp 1| | | | | \-------+| | | +------------------ -----+ \-------- Chor purp 2| | | | || | | | | /-------- Diptychocarpus 1| | | | \---------------+| | | | \-------- Diptychocarpus 2| | | || | | | /-------- Litwinowia 1| | | | /---------------+| | | | | \-------- Litwinowia 2| | | | || | | | | /-------- Parrya asper 1| | | +------------------ -----+ /-------+| | | | | | \-------- Parrya asper 2| | | | | || | | | \-------+---------------- Parrya pavlovii| | | | || | | | \---------------- Parrya darvazica| | | || | | | /-------- Parrya saxifraga| | | | /-------+| | | | | \-------- Parrya kuramensi| | | | /---------- -------------+| | | | | \---------------- Parrya schugnana| | | | || | | | | /-- ------------------------------ Parrya turk 1| | | | | || | | | | +-- ------------------------------ Parrya turk 2| | | | | || | | | | +-- ------------------------------ Parrya turk 3| | | | | || | | | +-------+ /---------------- Parrya sp Sichua| | | | | | || | | | | | /-------+ /-------- Parrya sp Ladakh| | | | | | | \-------+| | | +-------+ | | \-------- Parrya sp Ladakh| | | | | | || | | | | \-- -----+ /-------- Parrya sp Tibet | | | | | +---------------+| | | | | | \-------- Parrya sp Tibet | | | | | || | | | | \------------------------ Parrya kunaw aff| | | | || | | | | /---------------- Parrya ajanensis| | | | | || | | | | | /-------- Parrya arctica| | | | | | || | | | \---------- -------------+ +-------- Parrya nauruaq| | | | | || | | | | +-------- Parrya nud 1| | | | \-------+| | | | +-------- Parrya nud 2| | | | || | | | +-------- Parrya nud 3| | \-------+ || | | \-------- Parrya rydbergii| | || | | /-------- Clausia podl 1| | | /-------+| | | | \-------- Clausia podl 2| | | || | | | /-------- Parrya pinnat 1| | +------------------ -------------+-------+| | | | \-------- Neuroloma botsch| | | || /-------+ | \---------------- Parrya pinnat 2| | | |


| | | +------------------ ------------------------------ Parrya pulvinata| | | || | | | /-------- Parrya maid 1| | | +------------------ ---------------------+| | | | \-------- Parrya maid 2| | | || | | | /-------- Parrya longicarp| | | | /-------+| | | | | \-------- Parrya subsiliqu| | | +------------------ -------------+| | | | \---------------- Parrya australis| | | || | | | /---------------- Pseudoclausia mo| | | | || | | | /-------+ /-------- Pseudoclausia tu| | | | | \-------+| | | | | \-------- Pseudoclausia gr| | | | || | | +------------------ -----+ /-------- Pseudoclausia hi| | | | | /-------+| | | | | | \-------- Pseudoclausia ol| | | | \-------+| | | | \---------------- Pseudoclausia sa| | | || | | +------------------ ------------------------------ Pseudoclausia pa| | | || | | | /-------- Parrya frut 1| | | | || | | | +-------- Parrya frut 2| | | +------------------ ---------------------+| | | | +-------- Parrya nuratensi| | | | || | | | \-------- Neuroloma pazija| | | || | | | /-------- Parrya villosula| | | | /-------+| | | | | \-------- Parrya angrenica| | | | /-------+\-------+ | | | \---------------- Parrya albida 1 | | +------------------ -----+ | | | \------------------------ Parrya albida af | | | | | | /-------- Parrya popovii 1 | | +------------------ ---------------------+ | | | \-------- Parrya popovii 2 | | | | | | /------------------------ Parrya tianschan | | | | | | | +------------------------ Parrya runcinata | | | | | | | | /-------- Parrya minjan 1 | | | | /-------+ | | | | | \-------- Parrya minjan 2 | | | +-------+ | | | | | /-------- Parrya lanc 1 | | | | \-------+ | | | | \-------- Parrya lanc 2 | | | | | | | /-- -----+------------------------ Parrya alba aff | | | | | | | | | +------------------------ Parrya stenophyl | | | | | | | | | +------------------------ Parrya stenoc 1 | | | | | | | | | +------------------------ Parrya stenoc 2 | | | | | | | \---------------+ +------------------------ Parrya stenoc af | | | | | | | +------------------------ Parrya stenoc af | | | | | | | \------------------------ Parrya saurica | | | | | | /-------- Parrya alba | | \-- ---------------------+


| | \-------- Parrya simulatri | | | \---------------------------------- ------------------------------ Macropodium niva | \------------------------------------------ ------------------------------ Stevenia axillar

Bootstrap method with heuristic search: Number of bootstrap replicates = 100 Starting seed = 1175966457 Optimality criterion = parsimony Character-status summary: Of 1216 total characters: All characters are of type 'unord' All characters have equal weight 827 characters are constant 144 variable characters are parsimony-uninf ormative Number of parsimony-informative characters = 245 Gaps are treated as "missing" Multistate taxa interpreted as uncertainty Starting tree(s) obtained via stepwise addition Addition sequence: simple (reference taxon = Lepi dium lacerum) Number of trees held at each step during stepwise addition = 1 Branch-swapping algorithm: tree-bisection-reconne ction (TBR) Steepest descent option not in effect Initial 'MaxTrees' setting = 10000 Branches collapsed (creating polytomies) if maxim um branch length is zero 'MulTrees' option in effect Topological constraints not enforced Trees are unrooted

100 bootstrap replicates completed Note: Effectiveness of search may have been dimi nished due to tree-buffer overflow. Time used = 60:12:25.0

Bootstrap 50% majority-rule consensus tree

/-------------------------------------------------- ------------------------- Lepidium lacerum(1)|+-------------------------------------------------- ------------------------- Lepidium rubtzov(2)|| /-------- Alyssum lenense(3)| /--98--+| | \-------- Galitzkya potani(4)| /-----------------67--------- ---------+| | \--------------- Dendroarabis fru(5)| || | /-------- Solmslaub baiog(8)| | /--77--+| | | \-------- Phaeon kashgar(9)| | /--100--+| | | | /-------- Strigos brevipes(10)| | | \-100--+| | /--91- -+ \-------- Spryginia falcat(11)| | | || | | \----------------------- Christolea crass(12)| | || | | /-------- Leiosp exscapa(13)| | /--69---+ /--82--+| | | | | \-------- Leiosp pamirica(14)| | | | /--83---+| | | | | | /-------- Parrya beket 1(15)| | | | | \--89--+| | | \--99- -+ \-------- Parrya beket 2(16)| | | || | | | /-------- Parrya saposhn 1(17)| | | \------92------+| | | \-------- Parrya saposhn 2(18)| | || +------74------+ /-------- Bunias or 1(19)| | +------------- 98--------------+| | | \-------- Bunias or 2(20)| | || | | /--------------- Matthiola madere(21)| | | |


| | | /--94---+ /-------- Ster viol(22)| | | | | || | | | \--80--+-------- Eremoblastus cas(23)| | | | || | \------63----- -+ \-------- Microstigma defl(24)| | || | | /-------- Hesperis sib 1(25)| | \-----100------+| | \-------- Hesperis sib 3(26)| || | /-------- Clausia aprica 1(27)| | /--99--+| | | \-------- Clausia aprica 2(28)| | /--61---+| | | \--------------- Dont pinnat(31)| /--93--+ /--68- -+| | | | \----------------------- Dont gubanovii(29)| | | /------99------+| | | | \----- ------------------------- Dont interm(30)| | | || | | | /-------- Dont tibet 1(32)| | | | /------------- 100-------------+| | | | | \-------- Dont tibet 2(33)| | | | || | | | | /-------- Chor tenella 1(34)| | | | | /-100--+| | | | | | \-------- Chor tenella 2(35)| | | | | /----- -51------+| | | | | | \--------------- Chor tashkorgan(41)| | | | | || | | | | | /-------- Chor sibirica 1(36)| | | | +--84---+ /------92------+| | | | | | | \-------- Chor songarica(38)| | | | | | || | | | | \--71- -+ /-------- Chor macropoda(37)| | | | | | /--54--+| | | | | | | \-------- Chor sabulosa(42)| | | | | \--92---+| | | | | \--------------- Chor bungeana 2(40)| | | | || | | | +------------- ------------------------- Chor bungeana 1(39)| | | | || | | | | /--------------- Chor persica 1(43)| | | | | || | | | | +--------------- Chor persica 2(44)| | | | | /--97---+| | | | | | | /-------- Chor purp 1(45)| | | | | | \--99--+| | | | +------68----- -+ \-------- Chor purp 2(46)| | | | | || | | | | | /-------- Diptychocarpus 1(47)| | | | | \-----100------+| | | | | \-------- Diptychocarpus 2(48)| | | | || | | | | /-------- Litwinowia 1(49)| | | | +------------- 100-------------+| | | | | \-------- Litwinowia 2(50)| | | | || | | | | /-------- Parrya asper 1(51)| | | | | /--91--+| | \--63---+ | | \-------- Parrya asper 2(52)| | | | || | | +----------98- ---------+--------------- Parrya pavlovii(53)| | | | || | | | \--------------- Parrya darvazica(54)| | | || | | | /-------- Parrya saxifraga(55)| | | | /--64--+| | | | | \-------- Parrya kuramensi(57)| | | +----------89- ---------+| | | | \--------------- Parrya schugnana(56)| | | || | | | /-------- Clausia podl 1(58)| | | +------------- 85--------------+


| | | | \-------- Clausia podl 2(59)| | | || | | | /-------- Parrya pinnat 1(60)| | | +------------- 80--------------+| | | | \-------- Neuroloma botsch(62)| | | || | | +------------- ------------------------- Parrya pinnat 2(61)| | | || | | +------------- ------------------------- Parrya pulvinata(63)| | | || | | | /-------- Parrya maid 1(64)| | | +------------- 67--------------+| | | | \-------- Parrya maid 2(65)| | | || | | | /-------- Parrya longicarp(66)| | | | /--98--+| | | | | \-------- Parrya subsiliqu(67)| | | +----------90- ---------+| | | | \--------------- Parrya australis(68)| | | || | | | /----------------------- Pseudoclausia mo(69)| | | | || | | | | /-------- Pseudoclausia tu(70)| | | | +------94------+| | | | | \-------- Pseudoclausia gr(71)| | | +------76----- -+| | | | | /-------- Pseudoclausia hi(72)| | | | | /--57--+| | \-100--+ | | \-------- Pseudoclausia ol(75)| /--60---+ | \--78---+| | | | \--------------- Pseudoclausia sa(74)| | | || | | +------------- ------------------------- Pseudoclausia pa(73)| | | || | | | /-------- Parrya frut 1(76)| | | | /--53--+| | | | | \-------- Parrya frut 2(77)| | | | || | | +----------70- ---------+--------------- Parrya nuratensi(78)| | | | || | | | \--------------- Neuroloma pazija(79)| | | || | | | /-------- Parrya villosula(80)| | | | /--77--+| | | | | \-------- Parrya angrenica(81)| | | +----------79- ---------+| | | | \--------------- Parrya albida 1(82)| | | || | | +------------- ------------------------- Parrya albida af(83)| | | || | | | /-------- Parrya popovii 1(84)| | | +------------- 90--------------+| | | | \-------- Parrya popovii 2(85)| | | || | | +------------- ------------------------- Parrya tianschan(86)| | | || | | +------------- ------------------------- Parrya runcinata(87)| | | || | | | /-------- Parrya minjan 1(88)| | | | /--63--+| | | | | \-------- Parrya minjan 2(89)| | | +----------61- ---------+| | | | | /-------- Parrya lanc 1(99)| | | | \--73--+| | | | \-------- Parrya lanc 2(100)| | | || | | +------------- ------------------------- Parrya alba aff(90)| | | || | | | /-------- Parrya alba(91)| | | +------------- 92--------------+| | | | \-------- Parrya simulatri(92)| | | || | | +------------- ------------------------- Parrya stenophyl(93)| | | |


\-100--+ | +------------- ------------------------- Parrya stenoc 1(94) | | | | | +------------- ------------------------- Parrya stenoc 2(95) | | | | | +------------- ------------------------- Parrya stenoc af(96) | | | | | +------------- ------------------------- Parrya stenoc af(97) | | | | | +------------- ------------------------- Parrya saurica(98) | | | | | +------------- ------------------------- Parrya turk 1(101) | | | | | +------------- ------------------------- Parrya turk 2(102) | | | | | +------------- ------------------------- Parrya turk 3(103) | | | | | | /--------------- Parrya sp Sichua(104) | | | | | | +----------59- ---------+ /-------- Parrya sp Ladakh(108) | | | \--80--+ | | | \-------- Parrya sp Ladakh(109) | | | | | +------------- ------------------------- Parrya sp Tibet (105) | | | | | +------------- ------------------------- Parrya sp Tibet (106) | | | | | +------------- ------------------------- Parrya kunaw aff(107) | | | | | +------------- ------------------------- Parrya ajanensis(110) | | | | | | /-------- Parrya arctica(111) | | | | | | | +-------- Parrya nauruaq(112) | | | | | | | +-------- Parrya nud 1(113) | | \------------- 55--------------+ | | +-------- Parrya nud 2(114) | | | | | +-------- Parrya nud 3(115) | | | | | \-------- Parrya rydbergii(116) | | | \----------------------------------- ------------------------- Macropodium niva(6) | \------------------------------------------- ------------------------- Stevenia axillar(7)

Bipartitions found in one or more trees and frequen cy of occurrence (bootstrap support values):

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1 1 190 1 1901234567890123456 Freq----------------------------.................. 100.00.................. 100.00.................. 100.00****************** 100.00.................. 100.00.................. 100.00.................. 100.00.................. 100.00****************** 100.00.................. 99.00.................. 99.00.................. 98.99.................. 98.99.................. 98.00.................. 97.99.................. 97.94.................. 97.75.................. 97.00.................. 94.00.................. 93.98****************** 93.04.................. 92.00.................. 91.99.................. 91.97.................. 91.77.................. 91.01.................. 90.67.................. 90.13.................. 89.88.................. 89.17.................. 89.00.................. 85.00.................. 83.93.................. 83.00.................. 82.00.................. 79.99.................. 79.95.........**....... 79.68.................. 78.61.................. 78.01.................. 77.08.................. 76.98.................. 76.00.................. 73.86**................ 72.98.................. 71.13.................. 69.86


.................. 68.89

.................. 67.97

.................. 67.54

.................. 66.82

.................. 66.58

.................. 64.18

.................. 63.04

.................. 63.00****************** 62.67.................. 61.07**................ 60.90****************** 60.20.....*...**....... 59.00.................. 57.00............****** 55.06.................. 54.00.................. 52.72.................. 51.18.................. 49.10.................. 48.99.................. 46.45.................. 46.41......**.......... 45.98**................ 43.20**................ 42.24.................. 42.21****************** 40.10...........******* 39.89.................. 39.79.................. 39.24.................. 38.82.................. 35.30****************** 34.55.................. 33.87.................. 32.93.....******....... 32.65.................. 32.04.................. 28.29.................. 27.01.................. 25.30.................. 23.39.................. 22.02.................. 22.02.................. 21.08..**.************* 20.07.................. 19.86.................. 18.99****************** 18.00.................. 17.27.................. 17.00.................. 16.68.............*...* 16.14..*........*...... 16.04..*........*...... 16.02.................. 15.94.................. 15.06****************** 15.02.................. 15.01.................. 14.48****************** 14.03........*......... 13.97.......*.......... 13.92..**.******....... 13.08****************** 13.01.................. 12.86**................ 12.76**................ 12.04.................. 12.00.................. 11.98..**.************* 11.97.................. 11.85.....**.***....... 11.85**................ 11.73.................. 11.66


**................ 11.32.................. 11.00....*............. 10.61****.************* 10.01.................. 10.01.................. 9.95.................. 9.87.................. 9.42****************** 9.40.................. 9.08.*................ 9.05.....******....... 9.03**................ 9.01..**.************* 9.01****************** 8.66**................ 8.40.................. 8.34****************** 8.23.................. 8.13.................. 8.11****************** 8.08............*..... 8.02****************** 8.00****************** 7.99.....*...........* 7.99.................. 7.98.................. 7.95..*********....... 7.93.......*.......... 7.86.................. 7.83**................ 7.71.................. 7.58**................ 7.48****************** 7.25.................. 7.14****************** 7.10.................. 7.02****************** 7.00.................. 6.99.................. 6.82.................. 6.78...........******* 6.70.................. 6.68.................. 6.57****************** 6.37....*............. 6.22...........*...... 6.20****************** 6.07**................ 6.04..**************** 6.02.............*.... 6.01.................. 6.00.......*.......... 5.98.................. 5.97****************** 5.95**................ 5.95..*****.***....... 5.93.................. 5.91.................. 5.87**................ 5.84**................ 5.81.................. 5.81**................ 5.41**................ 5.38****************** 5.33.................. 5.27.................. 5.24****************** 5.11.................. 5.08****************** 5.00.................. 5.00.................. 5.00

24332 groups at (relative) frequency less than 5% n ot shown


Jackknife method with heuristic search: Number of jackknife replicates = 100 Nominal percentage of characters deleted in each replicate = 50 Starting seed = 418623351 Optimality criterion = parsimony Character-status summary: Of 1216 total characters: All characters are of type 'unord' All characters have equal weight 827 characters are constant 144 variable characters are parsimony-uninf ormative Number of parsimony-informative characters = 245 Gaps are treated as "missing" Multistate taxa interpreted as uncertainty Starting tree(s) obtained via stepwise addition Addition sequence: simple (reference taxon = Lepi dium lacerum) Number of trees held at each step during stepwise addition = 1 Branch-swapping algorithm: tree-bisection-reconne ction (TBR) Steepest descent option not in effect Initial 'MaxTrees' setting = 10000 Branches collapsed (creating polytomies) if maxim um branch length is zero 'MulTrees' option in effect Topological constraints not enforced Trees are unrooted

Note: 608 characters are deleted in each replica te; actual deletion percentage = 50.000

100 jackknife replicates completed Note: Effectiveness of search may have been dimi nished due to tree-buffer overflow. Time used = 86:46:52.0

Jackknife 50% majority-rule consensus tree

/-------------------------------------------------- ------------------------- Lepidium lacerum(1)|+-------------------------------------------------- ------------------------- Lepidium rubtzov(2)|| /-------- Alyssum lenense(3)| /--97--+| | \-------- Galitzkya potani(4)| /-----------------61--------- ---------+| | \--------------- Dendroarabis fru(5)| || | /-------- Solmslaub baiog(8)| | /--68--+| | | \-------- Phaeon kashgar(9)| | /--99---+| | | | /-------- Strigos brevipes(10)| | | \--98--+| | /--93- -+ \-------- Spryginia falcat(11)| | | || | | \----------------------- Christolea crass(12)| | || | | /-------- Leiosp exscapa(13)| | /--76---+ /--72--+| | | | | \-------- Leiosp pamirica(14)| | | | /--80---+| | | | | | /-------- Parrya beket 1(15)| | | | | \--81--+| | | \-100- -+ \-------- Parrya beket 2(16)| | | || | | | /-------- Parrya saposhn 1(17)| | | \------83------+| | | \-------- Parrya saposhn 2(18)| | || +------76------+ /-------- Bunias or 1(19)| | +------------- 97--------------+| | | \-------- Bunias or 2(20)| | || | | /--------------- Matthiola madere(21)| | | || | | /--91---+ /-------- Ster viol(22)| | | | | |


| | | | \--76--+-------- Eremoblastus cas(23)| | | | || | \------57----- -+ \-------- Microstigma defl(24)| | || | | /-------- Hesperis sib 1(25)| | \-----100------+| | \-------- Hesperis sib 3(26)| || | /-------- Clausia aprica 1(27)| | /--95--+| | | \-------- Clausia aprica 2(28)| | /--52---+| | | \--------------- Dont pinnat(31)| /--86--+ /--68- -+| | | | \----------------------- Dont gubanovii(29)| | | /-----100------+| | | | \----- ------------------------- Dont interm(30)| | | || | | | /-------- Dont tibet 1(32)| | | | /------------- 100-------------+| | | | | \-------- Dont tibet 2(33)| | | | || | | | | /-------- Chor tenella 1(34)| | | | | /----- ----99----------+| | | | | | \-------- Chor tenella 2(35)| | | | | || | | | | | /-------- Chor sibirica 1(36)| | | | | | /------83------+| | | | | | | \-------- Chor songarica(38)| | | | | | || | | | +--82---+--67- -+ /-------- Chor macropoda(37)| | | | | | | /--52--+| | | | | | | | \-------- Chor sabulosa(42)| | | | | | \--85---+| | | | | | \--------------- Chor bungeana 2(40)| | | | | || | | | | \----- ------------------------- Chor tashkorgan(41)| | | | || | | | +------------- ------------------------- Chor bungeana 1(39)| | | | || | | | | /--------------- Chor persica 1(43)| | | | | || | | | | +--------------- Chor persica 2(44)| | | | | /--97---+| | | | | | | /-------- Chor purp 1(45)| | | | | | \--88--+| | | | +------53----- -+ \-------- Chor purp 2(46)| | | | | || | | | | | /-------- Diptychocarpus 1(47)| | | | | \-----100------+| | | | | \-------- Diptychocarpus 2(48)| | | | || | | | | /-------- Litwinowia 1(49)| | | | +------------- 100-------------+| | | | | \-------- Litwinowia 2(50)| | | | || | | | | /-------- Parrya asper 1(51)| | | | | /--75--+| | | | | | \-------- Parrya asper 2(52)| | \--55---+ | || | | +----------89- ---------+--------------- Parrya pavlovii(53)| | | | || | | | \--------------- Parrya darvazica(54)| | | || | | | /-------- Parrya saxifraga(55)| | | | /--55--+| | | | | \-------- Parrya kuramensi(57)| | | +----------94- ---------+| | | | \--------------- Parrya schugnana(56)| | | || | | | /-------- Clausia podl 1(58)| | | +------------- 81--------------+| | | | \-------- Clausia podl 2(59)| | | |


| | | | /-------- Parrya pinnat 1(60)| | | +------------- 67--------------+| | | | \-------- Neuroloma botsch(62)| | | || | | +------------- ------------------------- Parrya pinnat 2(61)| | | || | | +------------- ------------------------- Parrya pulvinata(63)| | | || | | +------------- ------------------------- Parrya maid 1(64)| | | || | | +------------- ------------------------- Parrya maid 2(65)| | | || | | | /-------- Parrya longicarp(66)| | | | /--82--+| | | | | \-------- Parrya subsiliqu(67)| | | +----------82- ---------+| | | | \--------------- Parrya australis(68)| | | || | | | /--------------- Pseudoclausia mo(69)| | | | || | | | | /-------- Pseudoclausia tu(70)| | | | +--94--+| | | +----------69- ---------+ \-------- Pseudoclausia gr(71)| | | | || | | | | /-------- Pseudoclausia hi(72)| | | | | || | | | \--65--+-------- Pseudoclausia sa(74)| /--53---+ | | || | | | | \-------- Pseudoclausia ol(75)| | | \-100--+| | | +------------- ------------------------- Pseudoclausia pa(73)| | | || | | | /-------- Parrya frut 1(76)| | | | || | | | +-------- Parrya frut 2(77)| | | +------------- 54--------------+| | | | +-------- Parrya nuratensi(78)| | | | || | | | \-------- Neuroloma pazija(79)| | | || | | | /-------- Parrya villosula(80)| | | | /--72--+| | | | | \-------- Parrya angrenica(81)| | | +----------59- ---------+| | | | \--------------- Parrya albida 1(82)| | | || | | +------------- ------------------------- Parrya albida af(83)| | | || | | | /-------- Parrya popovii 1(84)| | | +------------- 81--------------+| | | | \-------- Parrya popovii 2(85)| | | || | | +------------- ------------------------- Parrya tianschan(86)| | | || | | +------------- ------------------------- Parrya runcinata(87)| | | || | | | /-------- Parrya minjan 1(88)| | | +------------- 53--------------+| | | | \-------- Parrya minjan 2(89)| | | || | | +------------- ------------------------- Parrya alba aff(90)| | | || | | | /-------- Parrya alba(91)| | | +------------- 78--------------+| | | | \-------- Parrya simulatri(92)| | | || | | +------------- ------------------------- Parrya stenophyl(93)| | | || | | +------------- ------------------------- Parrya stenoc 1(94)| | | || | | +------------- ------------------------- Parrya stenoc 2(95)| | | |\-100--+ | +------------- ------------------------- Parrya stenoc af(96) | | |


| | +------------- ------------------------- Parrya stenoc af(97) | | | | | +------------- ------------------------- Parrya saurica(98) | | | | | | /-------- Parrya lanc 1(99) | | +------------- 61--------------+ | | | \-------- Parrya lanc 2(100) | | | | | +------------- ------------------------- Parrya turk 1(101) | | | | | +------------- ------------------------- Parrya turk 2(102) | | | | | +------------- ------------------------- Parrya turk 3(103) | | | | | +------------- ------------------------- Parrya sp Sichua(104) | | | | | +------------- ------------------------- Parrya sp Tibet (105) | | | | | +------------- ------------------------- Parrya sp Tibet (106) | | | | | +------------- ------------------------- Parrya kunaw aff(107) | | | | | | /-------- Parrya sp Ladakh(108) | | +------------- 66--------------+ | | | \-------- Parrya sp Ladakh(109) | | | | | +------------- ------------------------- Parrya ajanensis(110) | | | | | +------------- ------------------------- Parrya arctica(111) | | | | | +------------- ------------------------- Parrya nauruaq(112) | | | | | +------------- ------------------------- Parrya nud 1(113) | | | | | +------------- ------------------------- Parrya nud 2(114) | | | | | +------------- ------------------------- Parrya nud 3(115) | | | | | \------------- ------------------------- Parrya rydbergii(116) | | | \----------------------------------- ------------------------- Macropodium niva(6) | \------------------------------------------- ------------------------- Stevenia axillar(7)

Bipartitions found in one or more trees and frequen cy of occurrence (jackknife support values):

1 2 3 4 5 6 7 8 9 9123456789012345678901234567890123456789012345678901 23456789012345678901234567890123456789012345678--------------------------------------------------- -----------------------------------------------..........................*****.................... .............................................................................................**... .......................................................................**......................... ...............................................................................................**. ..............................................................................******************** ***********************************************...............................**.................. .................................................************************************************* ***********************************************............******................................. ................................................................................**................ ......................................................****........................................ ........................................................**........................................ .................................................**............................................... .................................................................**............................... .........................................................................................****..... .........................................................................**....................... .................................................................................................. ..................**.............................................................................. ...***................................................*****....................................... ...................................................................****........................... .................................................................................................* ***........................................................................................**..... .................................................***..******************************************** ***********************************************....................................*..*.*......... ..................................................................................*.*............. ...............................................................**................................. ...............................................


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1 1 190 1 1901234567890123456 Freq----------------------------.................. 100.00.................. 100.00.................. 100.00.................. 100.00****************** 100.00.................. 100.00****************** 100.00.................. 100.00.................. 99.00.................. 99.00.................. 98.00.................. 97.00.................. 97.00.................. 97.00.................. 95.01.................. 94.01.................. 94.00.................. 93.43.................. 90.71.................. 88.93.................. 87.98****************** 86.25.................. 85.00.................. 82.97.................. 82.64.................. 82.38.................. 82.35.................. 81.91.................. 81.33.................. 81.00.................. 80.94.................. 80.00.................. 77.95.................. 76.42.................. 76.13.................. 76.04.................. 74.64.................. 72.30.................. 71.89.................. 69.05.................. 67.70.................. 67.68.................. 67.29.................. 67.05.........**....... 65.92.................. 64.81.................. 61.12**................ 60.83.................. 59.17.................. 56.65.................. 55.30****************** 54.64.................. 53.69****************** 53.18.................. 53.00.................. 52.88.................. 52.20.................. 52.00**................ 49.78............****** 48.02.................. 46.90****************** 44.25.................. 43.93.................. 43.73.................. 43.63.................. 42.42.................. 42.14.....*...**....... 42.00......**.......... 41.84.................. 40.96


.................. 40.91

.................. 39.96**................ 39.50.....******....... 37.20.................. 35.99.................. 35.93.................. 33.99.................. 33.63...........******* 32.12.................. 30.94**................ 30.29.................. 30.13.................. 30.05.................. 27.97.................. 24.86.................. 23.69****************** 23.52.................. 22.99.................. 22.84.................. 21.81.................. 20.43.................. 18.41.................. 16.98.................. 16.97.................. 16.56..*........*...... 15.96****************** 15.54****************** 15.45.................. 14.40........*......... 13.89.................. 13.37..**************** 13.33****************** 13.23..*********....... 13.03.................. 13.02.................. 12.99****************** 12.93..**.************* 12.92****************** 12.59.................. 12.34..*........*...... 11.89.................. 11.88.................. 11.46.............*...* 11.38****************** 11.18.................. 10.99.................. 10.94****************** 10.69.................. 10.65.................. 10.65.................. 10.62.................. 10.48.................. 9.99.................. 9.14.................. 9.01****************** 8.89.................. 8.59**................ 8.28****************** 8.21.............*.... 8.01.................. 7.99....*............. 7.95**................ 7.86.*................ 7.72****************** 7.30.................. 7.14..**************** 7.06.......*.......... 7.01.................. 6.97.................. 6.95****************** 6.95.................. 6.95..**.******....... 6.95.................. 6.84


**................ 6.78............****** 6.78****************** 6.39****************** 6.33**................ 6.30.................. 6.07****************** 6.03.................. 5.99.................. 5.99.................. 5.95**................ 5.90.................. 5.89.................. 5.76.................. 5.70.................. 5.70****************** 5.62.....******....... 5.45****************** 5.32**................ 5.19.................. 5.10..**.************* 5.03.......*.......... 5.03****************** 5.02..*********....... 5.01............*..... 5.01.................. 5.01.................. 5.00..**************** 5.00

37341 groups at (relative) frequency less than 5% n ot shown

Molecular phylogeny and systematics of the tribe ...10.1007/s00606-011-0452... ·...

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Transcript of Molecular phylogeny and systematics of the tribe ...10.1007/s00606-011-0452... ·...