Mining brain waves with MNE...SPM MEEG Donders Fieldtrip Nutmeg (UCSF) (Konstanz) Brainstorm (Mc...
Transcript of Mining brain waves with MNE...SPM MEEG Donders Fieldtrip Nutmeg (UCSF) (Konstanz) Brainstorm (Mc...
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Alexandre Gramfort
Telecom ParisTech - CNRS LTCI - CEA [email protected]
Mining brain waves with MNE
GitHub : @agramfort Twitter : @agramfort
http://martinos.org/mne/stable/index.html
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B
NeuralCurrent(post synaptic)
EquivalentCurrentDipole
dB/dz MEG recordings
First EEG recordings
in 1929by H. Berger
ENeuralCurrent(post synaptic)
EquivalentCurrentDipole
V EEG recordings
EEG & MEG: non-invasive electrophy
First whole head MEG 1992
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EEG :• ≈ 100 sensors
MEG :• ≈ 150 to 300 sensors
Sampling between 250 and1000 Hz
Sample EEG measurements
M/EEG Measurements
High temporal resolution
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subject fsaveragemorphing
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The landscape of M/EEGsoftware development
eeglab(UCSD)
UCLSPM
MEEG
DondersFieldtrip
Nutmeg
(UCSF)(Konstanz)
Brainstorm(Mc Gill)
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Development of the MNE softwarebefore 2010
Harvard
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Development of the MNE softwarein 2014
Berkeley
ParisHarvard
NYU
Cambridge Aalto
IlmenauJuelich
Sheffield
U. Wash.
UCSF
Gratz
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• MNE based on C code developed for ~15 years by MSH• MNE-Python started in Dec. 2010 at MGH, Boston
About the project
Source: https://www.ohloh.net/p/MNE
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Demo
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Objective
https://www.kaggle.com/c/decoding-the-human-brain
Organized by: E. Olivetti, M. Kia, P. Avesani, N. Weisz (Univ. of Trento, IT),D. Wakeman (Harvard, USA), R. Henson (MRC/CBU, Cambridge, UK),O. Jensen (Donders Institute, NL), and A. Gramfort (Telecom ParisTech, CEA)
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Objective
Every 1s or 2s
Can we classify if subject saw a face or scrambled face?
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MEGSensor 1 (fT)
MEGSensor 2
(fT) xi s.t. yi = 1
xi s.t. yi = -1
Objective
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Hacking time…
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Get inspired ...http://martinos.org/mne/auto_examples/index.html
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Ask for helphttp://martinos.org/mne/
http://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis
Mailing list:
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People
@agramfort @mluessi @dengemann
@lauriparkkonen
@Eric89GXL
@mshamalainen
@t3on
@joewalter
@mainakjas@rgoj
@chris=anmbrodbeck
@you?
@adykstra @dgwakeman @leggiAa
@kazemakase
@TalLinzen
@OlafHauk @ jdammers
http://martinos.org/mne/stable/whats_new.html
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Alexandre [email protected]:
References
Funding:
MNE software for processing MEG and EEG data, A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, L. Parkkonen, M. Hämäläinen, Neuroimage, 2014
MEG and EEG data analysis with MNE-Python, A. Gramfort, M. Luessi, E. Larson, D. Engemann, D. Strohmeier, C. Brodbeck, R. Goj, M. Jas, T. Brooks, L. Parkkonen, M. Hämäläinen, Frontiers in Neuroscience, 2013
GitHub : @agramfort Twitter : @agramfort
NIH, NSF, Google (GSOC 2013, 2014)