Minimal Protein from DNA Mini Circles Provides Therapeutic ...
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Matthew Nitzahn 1,2 , Suhail Khoja 2 , Jenna Lambert 2 , Hiu Man Grisch-Chan 3 , Beat Thöny 3 , Gerald S. Lipshutz 1,2,4 Introduction Minimal Protein from DNA Mini Circles Provides Therapeutic Benefit in CPS1 Deficiency • Carbamoyl phosphate synthetase 1 (CPS1) catalyzes the first committed step of the urea cycle, eliminating nitrogen waste • Loss of CPS1 function results in toxic ammonia levels and encephalopathy, often leading to death • Treatments for CPS1 deficiency are largely ineffective, and donor livers for transplantation are scarce • AAV-based gene therapy is attractive, and we recently demonstrated its potential in a proof-of-concept study using split AAVs (Nitzahn 2020) • To avoid expensive, intensive viral approaches, DNA mini circles (MCs) provide an alternative to investigate • MCs containing human codon optimized CPS1 (hcoCPS1) driven by the CAG promoter were generated and conjugated to jetPEI-Gal (Polyplus) at nitrogen/phosphate ratio = 8 • Adult female Cps1 flox/flox mice (Khoja 2018) were injected with AAV-Cre alone (control) or AAV-Cre + MCs (treated) at 1.6-2.4mg/kg MC in 4-5 doses • Mice were weighed daily and given n-carglumic acid (200mg/L) in drinking water. • Plasma was collected at regular intervals and at humane euthanasia time points from sick mice • Livers were collected immediately after euthanasia for analysis Figure 1. Schematic of MC generation. A parental plasmid containing the transgenic cassette flanked by attB and attP recombination sites is generated and propagated in the specialized E. coli strain from Kay 2010. Induction of øC31- integrase with L-arabinose recombines the attB/P sites, forming the MC and daughter plasmid. I-SceI sites in the daughter are recognized and mediate its digestion, yielding pure MCs. Figure 2. Untreated mice perish while MC-treated survive. MC-treated mice had significantly longer survival than their untreated counterparts (p < 0.05). The treated mouse that expired receive the lowest dose (134μg vs. >170μg). n = 3 mice per group • MCs expressing hcoCPS1 are sufficient to extend lifespan and reduce plasma ammonia in Cps1-deficient mice • MC-treated mice have low gene and protein expression • MC-derived protein is mainly localized to the perivasculature Kay, M. A et al. Nat Biotechnol 28, 1287–1289 (2010). Khoja, S. et al. Molecular Genetics and Metabolism 124, 243–253 (2018). Nitzahn, M. et al. Molecular Therapy. In press (2020). • Increase the number of mice to confirm that observed trends are statistically significant • Expand treatment to include male mice, which may have differential response to therapeutics (Khoja 2018) • Optimize dosing and administration strategies to maximize therapeutic benefits Funding for this work was provided by the UCLA Whitcome Pre-Doctoral Fellowship and R21NS091654 to GSL. The MC bacteria and empty parental plasmid were generous gifts from HMGC and BT. . Figure 4. MC-treated mice have extremely low CPS1 expression. Total DNA was extracted and the vector copy number determined in MC-treated mice (left); the ~14 value corresponds to the mouse that perished. Total RNA was also analyzed and compared to wild type mice (right). Treated mice show barely detectable levels of CPS1 expression, despite 2 of 3 showing no outward signs of poor health at the time to euthanasia. The highest expression was found in the mouse that perished. n = 3 treated, 5 wild type. Figure 3. MC-treated mice show reduced plasma ammonia. Mice treated with MCs trend towards reduced plasma ammonia compared to untreated controls. Plasma was not available from the treated mouse that perished. n = 2 per group; bars are mean ± SEM Methods Funding & Acknowledgments Conclusions Results Future Directions References 1 Molecular Biology Institute, 2 Surgery, 3 Molecular and Medical Pharmacology, UCLA ; 3 Division of Metabolism and Children’s Research Center, University Children’s Hospital Zurich Lab website: https://lipshutzlabucla.com/ KO MC 0 500 1000 1500 2000 Plasma Ammonia ( M) p = 0.096 0 10 20 30 40 0 50 100 Time (Days) Survival Untreated Treated Log-rank p<0.05 0 5 10 15 20 25 Vector Copy Number Per Diploid Genome MC WT 0.00000 0.00025 0.00050 0.00075 0.00100 1.0 1.5 CPS1 mRNA Expression p < 0.01 Figure 5. CPS1 protein expression and distribution in MC-treated mice. Top) Immunohistochemistry in mice treated with MCs (left 3 columns) shows bright, perivascular CPS1 expression with little distributed throughout the liver parenchyma. Wild type mice (far right column) have extensive, pan-hepatic CPS1 expression. The treated mouse that perished is on the far left. Bottom left) Western blot of MC-treated mice compared to wild type (WT). The treated mouse that perished is in lane 1. Protein levels are far below wild type levels in all treated mice. CPS1 β-actin MC-treated WT Contact: [email protected]
Transcript of Minimal Protein from DNA Mini Circles Provides Therapeutic ...
Matthew Nitzahn1,2, Suhail Khoja2, Jenna Lambert2, Hiu Man Grisch-Chan3, Beat Thöny3, Gerald S. Lipshutz1,2,4
Introduction
Minimal Protein from DNA Mini Circles Provides Therapeutic Benefit in CPS1 Deficiency
• Carbamoyl phosphate
synthetase 1 (CPS1) catalyzes
the first committed step of the
urea cycle, eliminating nitrogen
waste
• Loss of CPS1 function results
in toxic ammonia levels and
encephalopathy, often leading
to death
• Treatments for CPS1 deficiency
are largely ineffective, and
donor livers for transplantation
are scarce
• AAV-based gene therapy is
attractive, and we recently
demonstrated its potential in a
proof-of-concept study using
split AAVs (Nitzahn 2020)
• To avoid expensive, intensive
viral approaches, DNA mini
circles (MCs) provide an
alternative to investigate
• MCs containing human codon
optimized CPS1 (hcoCPS1)
driven by the CAG promoter
were generated and conjugated
to jetPEI-Gal (Polyplus) at
nitrogen/phosphate ratio = 8
• Adult female Cps1flox/flox mice
(Khoja 2018) were injected
with AAV-Cre alone (control)
or AAV-Cre + MCs (treated) at
1.6-2.4mg/kg MC in 4-5 doses
• Mice were weighed daily and
given n-carglumic acid
(200mg/L) in drinking water.
• Plasma was collected at regular
intervals and at humane
euthanasia time points from
sick mice
• Livers were collected
immediately after euthanasia
for analysis
Figure 1. Schematic of MC generation. A parental plasmid
containing the transgenic cassette flanked by attB and attP
recombination sites is generated and propagated in the
specialized E. coli strain from Kay 2010. Induction of øC31-
integrase with L-arabinose recombines the attB/P sites,
forming the MC and daughter plasmid. I-SceI sites in the
daughter are recognized and mediate its digestion, yielding
pure MCs.
Figure 2. Untreated mice perish while MC-treated survive.
MC-treated mice had significantly longer survival than their
untreated counterparts (p < 0.05). The treated mouse that
expired receive the lowest dose (134µg vs. >170µg). n = 3
mice per group
• MCs expressing hcoCPS1 are
sufficient to extend lifespan
and reduce plasma ammonia in
Cps1-deficient mice
• MC-treated mice have low
gene and protein expression
• MC-derived protein is mainly
localized to the perivasculature
Kay, M. A et al. Nat Biotechnol
28, 1287–1289 (2010).
Khoja, S. et al. Molecular
Genetics and Metabolism 124,
243–253 (2018).
Nitzahn, M. et al. Molecular
Therapy. In press (2020).
• Increase the number of mice to
confirm that observed trends
are statistically significant
• Expand treatment to include
male mice, which may have
differential response to
therapeutics (Khoja 2018)
• Optimize dosing and
administration strategies to
maximize therapeutic benefits
Funding for this work was
provided by the UCLA Whitcome
Pre-Doctoral Fellowship and
R21NS091654 to GSL.
The MC bacteria and empty
parental plasmid were generous
gifts from HMGC and BT.
.
Figure 4. MC-treated mice have extremely low CPS1
expression. Total DNA was extracted and the vector copy
number determined in MC-treated mice (left); the ~14 value
corresponds to the mouse that perished. Total RNA was also
analyzed and compared to wild type mice (right). Treated
mice show barely detectable levels of CPS1 expression,
despite 2 of 3 showing no outward signs of poor health at the
time to euthanasia. The highest expression was found in the
mouse that perished. n = 3 treated, 5 wild type.
Figure 3. MC-treated mice show reduced plasma
ammonia. Mice treated with MCs trend towards reduced
plasma ammonia compared to untreated controls. Plasma was
not available from the treated mouse that perished. n = 2 per
group; bars are mean ± SEM
Methods
Funding &
Acknowledgments
ConclusionsResults
Future Directions
References
1Molecular Biology Institute, 2Surgery, 3Molecular and Medical Pharmacology, UCLA ; 3Division of Metabolism and Children’s Research Center, University Children’s Hospital Zurich
Lab website: https://lipshutzlabucla.com/
KO MC
0
500
1000
1500
2000
Pla
sm
a A
mm
on
ia (
M)
p = 0.096
0 10 20 30 40
0
50
100
Time (Days)
Su
rviv
al
Untreated
TreatedLog-rankp<0.05
0
5
10
15
20
25
Vec
tor
Co
py N
um
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Per
Dip
loid
Gen
om
e
MC WT
0.00000
0.00025
0.00050
0.00075
0.00100
1.0
1.5
CP
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RN
A E
xp
ressio
n
p < 0.01
Figure 5. CPS1 protein expression and distribution in MC-treated mice. Top)
Immunohistochemistry in mice treated with MCs (left 3 columns) shows bright, perivascular
CPS1 expression with little distributed throughout the liver parenchyma. Wild type mice (far right
column) have extensive, pan-hepatic CPS1 expression. The treated mouse that perished is on the
far left. Bottom left) Western blot of MC-treated mice compared to wild type (WT). The treated
mouse that perished is in lane 1. Protein levels are far below wild type levels in all treated mice.
CPS1
β-actin
MC-treated WT
Contact: [email protected]
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